Query         gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 113
No_of_seqs    112 out of 1985
Neff          6.0 
Searched_HMMs 39220
Date          Mon May 30 00:07:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780658.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10333 putative ligase; Prov 100.0 2.6E-41       0  240.5   7.8  103    1-105    92-198 (198)
  2 TIGR02727 MTHFS_bact 5,10-meth 100.0 7.1E-41 1.4E-45  238.1   6.3   98    1-99     82-183 (183)
  3 pfam01812 5-FTHF_cyc-lig 5-for 100.0 1.3E-37 3.4E-42  220.7   7.6   95    3-99     84-182 (182)
  4 COG0212 5-formyltetrahydrofola 100.0 3.5E-36 8.8E-41  213.2   6.9  104    1-106    83-191 (191)
  5 KOG3093 consensus               99.9 3.4E-28 8.8E-33  170.7   4.3   91   10-100   101-200 (200)
  6 KOG4410 consensus               99.4 9.9E-14 2.5E-18   93.9   4.8   80   29-108   156-241 (396)
  7 TIGR01899 cas_TM1807_csm5 CRIS  57.1     2.8 7.1E-05   22.5  -0.2   19   44-62    376-394 (465)
  8 PRK12420 histidyl-tRNA synthet  55.4     8.6 0.00022   19.9   2.1   31   51-81    295-325 (421)
  9 PRK13176 consensus              47.2      25 0.00063   17.4   3.4   54   28-83     42-96  (216)
 10 PRK01175 phosphoribosylformylg  43.3      26 0.00066   17.3   3.0   60   29-90     47-114 (255)
 11 PRK00037 hisS histidyl-tRNA sy  41.6      12  0.0003   19.1   1.0   30   50-81    283-312 (417)
 12 TIGR02821 fghA_ester_D S-formy  41.1      15 0.00037   18.6   1.4   58    2-59     14-109 (279)
 13 PRK12295 hisZ ATP phosphoribos  39.3      23  0.0006   17.5   2.3   36   47-83    334-369 (373)
 14 PRK12292 hisZ ATP phosphoribos  39.0      22 0.00055   17.7   2.1   30   50-82    286-315 (388)
 15 COG1332 CRISPR system related   38.2     5.1 0.00013   21.1  -1.3   15   47-61    304-318 (369)
 16 CHL00201 syh histidine-tRNA sy  38.1      24 0.00061   17.5   2.2   29   50-80    282-310 (424)
 17 cd00773 HisRS-like_core Class   34.1      31 0.00079   16.9   2.2   49   28-78    194-253 (261)
 18 cd01748 GATase1_IGP_Synthase T  29.6      54  0.0014   15.6   3.2   51   28-82     34-85  (198)
 19 pfam11959 DUF3473 Domain of un  29.2      44  0.0011   16.1   2.3   51   11-61      5-57  (133)
 20 KOG0967 consensus               28.6      21 0.00054   17.8   0.6   72   32-110   560-635 (714)
 21 pfam01686 Adeno_Penton_B Adeno  27.0      26 0.00066   17.3   0.8   22   27-48    196-217 (454)
 22 PRK13175 consensus              24.3      58  0.0015   15.5   2.2   51   28-82     37-88  (206)
 23 pfam10001 DUF2242 Uncharacteri  23.7      37 0.00093   16.5   1.1   17   83-99     86-102 (121)
 24 PRK13178 consensus              23.6      70  0.0018   15.0   3.2   52   29-83     36-87  (213)
 25 PRK13177 consensus              21.5      77   0.002   14.8   2.8   55   28-84     39-94  (207)

No 1  
>PRK10333 putative ligase; Provisional
Probab=100.00  E-value=2.6e-41  Score=240.48  Aligned_cols=103  Identities=29%  Similarity=0.501  Sum_probs=92.5

Q ss_pred             CEEEEECCCCCCEECCCCCCCCCCCCC----CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             934653488852464888708899986----1146677401422111001112486037899988874499837999832
Q gi|254780658|r    1 MIFRQYENPTDLVKSAVGTLSPPSYAK----EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAF   76 (113)
Q Consensus         1 l~F~~~~~~~~l~~~~~gI~EP~~~~~----~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~   76 (113)
                      |.|+.|++.++|.+|+|||+||..+..    ...+|++||||||||++|+|||||||||||+|++++..  ++..||+||
T Consensus        92 l~f~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~iDlilVP~laFD~~G~RLGyGgGyYDR~L~~~~~~--~~~~Igla~  169 (198)
T PRK10333         92 LLFLNYHPQSELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHY--KTQPVGYAH  169 (198)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCEEECCCCCHHHHHHHCCCC--CCCEEEEEE
T ss_conf             799980899845528889999998755544644488499440466588816366874251575644203--871899971


Q ss_pred             HHHEECCCCCCCCCCCCCEEECCCCEEEE
Q ss_conf             23242478998447511589989855970
Q gi|254780658|r   77 DMQETSCIQAEATDIRLHAILTESRFSQF  105 (113)
Q Consensus        77 ~~q~~~~ip~e~hD~~ld~iiTe~~~~~f  105 (113)
                      ++|+++++|.|+||++||+||||+++|+|
T Consensus       170 ~~Q~~~~iP~e~hD~~lD~iiTe~~iy~f  198 (198)
T PRK10333        170 DCQLVEKLPVEEWDIPLPAVVTPSKVWEW  198 (198)
T ss_pred             CCEEECCCCCCCCCCCCCEEECCCCEEEC
T ss_conf             22760657997325547999888811519


No 2  
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg^2+ . 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin .; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=100.00  E-value=7.1e-41  Score=238.13  Aligned_cols=98  Identities=39%  Similarity=0.691  Sum_probs=88.7

Q ss_pred             CEEEEECCCCCCEECCCCCCCCCCCCC-C---CCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             934653488852464888708899986-1---146677401422111001112486037899988874499837999832
Q gi|254780658|r    1 MIFRQYENPTDLVKSAVGTLSPPSYAK-E---MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAF   76 (113)
Q Consensus         1 l~F~~~~~~~~l~~~~~gI~EP~~~~~-~---~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~   76 (113)
                      |.|..|+..+.|.+|+|||+||..+.. .   .++|+||||+||||++|+|||||||||||||++++.....++.||+||
T Consensus        82 ~~~~~~~~~~~l~~~~~Gi~eP~~~~~~~~~~~~~Dl~~VP~vAfD~~G~RlGyGgGyYDR~L~~~~~~~~~~~~ig~~f  161 (183)
T TIGR02727        82 LFFRIWSPEDPLVKGPFGILEPPEDDTEPVPPDEIDLIIVPGVAFDRRGYRLGYGGGYYDRFLARLKGKTVPAIKIGLAF  161 (183)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCEEECCCCCEEECCCCHHHHHHHCCCCCCCCEEEEEEEE
T ss_conf             56775168764002667885888755556551011768826376889886740568746787550678887606888510


Q ss_pred             HHHEECCCCCCCCCCCCCEEECC
Q ss_conf             23242478998447511589989
Q gi|254780658|r   77 DMQETSCIQAEATDIRLHAILTE   99 (113)
Q Consensus        77 ~~q~~~~ip~e~hD~~ld~iiTe   99 (113)
                      ++|+++ +|.|+||+|||.||||
T Consensus       162 ~~q~~~-~P~e~hD~p~d~~~Te  183 (183)
T TIGR02727       162 DFQLVD-LPREPHDVPVDAIITE  183 (183)
T ss_pred             HHHHHC-CCCCCCCCCCCEEECC
T ss_conf             001220-6887355225714709


No 3  
>pfam01812 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family. 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase EC:6.3.3.2 catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin.
Probab=100.00  E-value=1.3e-37  Score=220.72  Aligned_cols=95  Identities=34%  Similarity=0.550  Sum_probs=84.2

Q ss_pred             EEEECCCCCCEECCCCCCCCCCCCC----CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHH
Q ss_conf             4653488852464888708899986----114667740142211100111248603789998887449983799983223
Q gi|254780658|r    3 FRQYENPTDLVKSAVGTLSPPSYAK----EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDM   78 (113)
Q Consensus         3 F~~~~~~~~l~~~~~gI~EP~~~~~----~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~   78 (113)
                      ++.|.+.+.|++|+|||+||.....    ...+|++||||||||++|+|||||||||||||+.++.  .++++|||||++
T Consensus        84 ~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~lDlilVP~vafD~~G~RLG~GgGyYDR~L~~~~~--~~~~~Igva~~~  161 (182)
T pfam01812        84 ITPYYPETGLPSGPYGLPEPIEEEQRELALNQIDLVLVPGVAFDRQGYRLGRGGGYYDRYLARLQG--HGPLTVGLAYDE  161 (182)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCEEECCCCCHHHHHHHCCC--CCCEEEEEEEHH
T ss_conf             872698773642788987898765544675668889955135758994700687407789885545--698399998202


Q ss_pred             HEECCCCCCCCCCCCCEEECC
Q ss_conf             242478998447511589989
Q gi|254780658|r   79 QETSCIQAEATDIRLHAILTE   99 (113)
Q Consensus        79 q~~~~ip~e~hD~~ld~iiTe   99 (113)
                      |+++++|.|+||++||+||||
T Consensus       162 Q~~~~ip~e~hD~~ld~iiTE  182 (182)
T pfam01812       162 QLVERLPQEPHDVPVDEIVTE  182 (182)
T ss_pred             EEECCCCCCCCCCCCCEEECC
T ss_conf             251768997215438989709


No 4  
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00  E-value=3.5e-36  Score=213.22  Aligned_cols=104  Identities=39%  Similarity=0.745  Sum_probs=94.1

Q ss_pred             CEEEEECCC--CCCEECCCCCCCCCCCCCCC---CCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             934653488--85246488870889998611---4667740142211100111248603789998887449983799983
Q gi|254780658|r    1 MIFRQYENP--TDLVKSAVGTLSPPSYAKEM---SPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIA   75 (113)
Q Consensus         1 l~F~~~~~~--~~l~~~~~gI~EP~~~~~~~---~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla   75 (113)
                      |.|..|.+.  ..+.+++|||.||......+   .+|+++||+||||++|+|||||||||||+|+.+.  +.++.+||+|
T Consensus        83 ~~f~~~~~~~~~~~~~~~~gi~eP~~~~~~~~~~~iDlvlvP~Vafd~~G~RLG~GgGyYDR~la~~~--~~~~~~ig~~  160 (191)
T COG0212          83 LLFLRYIPDPLQPLIKNRFGILEPGEYGRKIPPPEIDLVLVPLVAFDKQGYRLGYGGGYYDRYLANLR--GRKTPTVGIA  160 (191)
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEEECCCCCEEECCCCHHHHHHHHHC--CCCCCEEEEE
T ss_conf             31389426876411233213448764567688667889995927798999432668657889987633--4688778987


Q ss_pred             CHHHEECCCCCCCCCCCCCEEECCCCEEEEC
Q ss_conf             2232424789984475115899898559700
Q gi|254780658|r   76 FDMQETSCIQAEATDIRLHAILTESRFSQFS  106 (113)
Q Consensus        76 ~~~q~~~~ip~e~hD~~ld~iiTe~~~~~f~  106 (113)
                      |++|+++.+|.|+||++||.|+||++++++.
T Consensus       161 ~~~Q~v~~lP~e~hDv~ld~ivt~~~~~~~~  191 (191)
T COG0212         161 YDCQLVDHLPREPHDVPLDAIVTEEGVIRCL  191 (191)
T ss_pred             EEEHHHCCCCCCCCCCCCCEEEECCCEEECC
T ss_conf             7001222378850026257899687327549


No 5  
>KOG3093 consensus
Probab=99.94  E-value=3.4e-28  Score=170.73  Aligned_cols=91  Identities=34%  Similarity=0.594  Sum_probs=80.1

Q ss_pred             CCCEECCCCCCCCCCCCCC-----C--CCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHC--CCCEEEEEEECHHHE
Q ss_conf             8524648887088999861-----1--466774014221110011124860378999888744--998379998322324
Q gi|254780658|r   10 TDLVKSAVGTLSPPSYAKE-----M--SPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLE--GKNPYLLGIAFDMQE   80 (113)
Q Consensus        10 ~~l~~~~~gI~EP~~~~~~-----~--~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~--~~~~~~igla~~~q~   80 (113)
                      +.|..++|||++|......     .  -+|++|||+||||+.|.|||+|+||||+||.++...  ..+|+++|||+.+|+
T Consensus       101 ~~l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivPGvAFd~~g~RlGhGkGYYD~flkry~~~~~~~kp~~vgL~l~EQI  180 (200)
T KOG3093         101 ESLPMTSWGIRQPKPGGPREDALETGHPLDLIIVPGVAFDRKGARLGHGKGYYDDFLKRYQIHAPEQKPLLVGLCLKEQI  180 (200)
T ss_pred             HHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             52752002787899887234323579860289836622133202126886518899999998655568314544546765


Q ss_pred             ECCCCCCCCCCCCCEEECCC
Q ss_conf             24789984475115899898
Q gi|254780658|r   81 TSCIQAEATDIRLHAILTES  100 (113)
Q Consensus        81 ~~~ip~e~hD~~ld~iiTe~  100 (113)
                      +.++|+++||++||.+|||+
T Consensus       181 ~~~IPv~~~Dv~lD~vvt~~  200 (200)
T KOG3093         181 LSEIPVEEHDVKLDAVVTED  200 (200)
T ss_pred             CCCCCCCCCCEEEEEEECCC
T ss_conf             36678885650356763388


No 6  
>KOG4410 consensus
Probab=99.44  E-value=9.9e-14  Score=93.92  Aligned_cols=80  Identities=24%  Similarity=0.348  Sum_probs=68.4

Q ss_pred             CCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCC---CCEEEEEEECHHHEECCCCC---CCCCCCCCEEECCCCE
Q ss_conf             14667740142211100111248603789998887449---98379998322324247899---8447511589989855
Q gi|254780658|r   29 MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEG---KNPYLLGIAFDMQETSCIQA---EATDIRLHAILTESRF  102 (113)
Q Consensus        29 ~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~---~~~~~igla~~~q~~~~ip~---e~hD~~ld~iiTe~~~  102 (113)
                      +..|+++|-.||+++.|+|||.|.||-|--++-+..-+   +..+.+-+.++||+++++|.   +.||+|+|+|+||+++
T Consensus       156 lkvDlvViGSVavs~~G~RiGkGeGfAdLeygmli~mGAi~~~TpvVTiVHDcQvVD~iP~el~~~hD~pVDiI~TPTrv  235 (396)
T KOG4410         156 LKVDLVVIGSVAVSREGYRIGKGEGFADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPELFQKHDTPVDIIATPTRV  235 (396)
T ss_pred             CEEEEEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCHHHHHHCCCCCCEEECCCEE
T ss_conf             26779998457751333010367760344667888752668888559997413541447988986427872078635047


Q ss_pred             EEECHH
Q ss_conf             970033
Q gi|254780658|r  103 SQFSTE  108 (113)
Q Consensus       103 ~~f~~~  108 (113)
                      +..+.-
T Consensus       236 I~t~~~  241 (396)
T KOG4410         236 IRTPKR  241 (396)
T ss_pred             EECCCC
T ss_conf             754887


No 7  
>TIGR01899 cas_TM1807_csm5 CRISPR-associated RAMP protein, Csm5 family; InterPro: IPR010173   CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1807 of Thermotoga maritima, is found also in Mycobacterium tuberculosis and in a number of archaeal species..
Probab=57.14  E-value=2.8  Score=22.46  Aligned_cols=19  Identities=21%  Similarity=0.525  Sum_probs=15.2

Q ss_pred             CHHHHCCCCEEHHHHHHHH
Q ss_conf             0011124860378999888
Q gi|254780658|r   44 KGNRIGYGRGYYDRAIADI   62 (113)
Q Consensus        44 ~G~RLG~GgGyYDR~l~~~   62 (113)
                      .--||||||||+-.|+-.+
T Consensus       376 ~~~~~G~GgG~~~~T~~~~  394 (465)
T TIGR01899       376 EVLRLGWGGGLRSKTVGIL  394 (465)
T ss_pred             EEEEEECCCCHHHCCCEEE
T ss_conf             5788405611344101002


No 8  
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=55.36  E-value=8.6  Score=19.86  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=23.1

Q ss_pred             CCEEHHHHHHHHHHCCCCEEEEEEECHHHEE
Q ss_conf             8603789998887449983799983223242
Q gi|254780658|r   51 GRGYYDRAIADIRLEGKNPYLLGIAFDMQET   81 (113)
Q Consensus        51 GgGyYDR~l~~~~~~~~~~~~igla~~~q~~   81 (113)
                      |||=||..++.+.+.....+.||.|+-...+
T Consensus       295 gGGRYD~Li~~fgg~~~~~PavGfa~Gierl  325 (421)
T PRK12420        295 SGGRYDNIIGAFRGDNMNYPTVGISFGLDVI  325 (421)
T ss_pred             CCCCHHHHHHHHCCCCCCCCEEEEEEHHHHH
T ss_conf             5665054898818998999747998519999


No 9  
>PRK13176 consensus
Probab=47.17  E-value=25  Score=17.44  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=36.9

Q ss_pred             CCCCCEEEEHHHH-HCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECC
Q ss_conf             1146677401422-1110011124860378999888744998379998322324247
Q gi|254780658|r   28 EMSPDLILMPLIA-FDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSC   83 (113)
Q Consensus        28 ~~~~DlilVP~la-fD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~   83 (113)
                      ....|.+|.|+|+ |+..-.+|=.=.|+.|..+..+...+  -+.+|+|.-.|+.-+
T Consensus        42 ~~~~~~lILPGVGsf~~~m~~L~~~~g~~~~i~~~~~~~~--~piLGIClGmQlL~~   96 (216)
T PRK13176         42 VARADRIVLPGVGAFADCRRGLDAVDGMVEALTEAVEKKA--RPFLGICVGMQLMAT   96 (216)
T ss_pred             HHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCC--CCEEEEEHHHEEHHH
T ss_conf             8379979989987789999987762772899999999769--957998531212653


No 10 
>PRK01175 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=43.33  E-value=26  Score=17.33  Aligned_cols=60  Identities=23%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             CCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHH-----CCCCEEEEEEECHHHEECC---CCCCCCC
Q ss_conf             146677401422111001112486037899988874-----4998379998322324247---8998447
Q gi|254780658|r   29 MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRL-----EGKNPYLLGIAFDMQETSC---IQAEATD   90 (113)
Q Consensus        29 ~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~-----~~~~~~~igla~~~q~~~~---ip~e~hD   90 (113)
                      .+.|++++|+ +|+- |-+||=|+++.-|+.+.+..     ..+..+.+|+|--||+.-+   +|.+.+.
T Consensus        47 ~~~~~lv~pG-GFSy-GD~l~aG~~~a~~~~~~~~~~i~~f~~~g~~vLGICNGfQiL~e~gLLPg~~~~  114 (255)
T PRK01175         47 SDYDCLIIPG-GFSA-GDYIRAGAIFAARLKAVLGKDIREFIDSGRPIIGICNGFQVLMELGLIPAERPE  114 (255)
T ss_pred             CCCCEEEECC-CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCC
T ss_conf             5554899737-7676-433575188999867999999999996799679980168999975877899988


No 11 
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=41.62  E-value=12  Score=19.14  Aligned_cols=30  Identities=23%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             CCCEEHHHHHHHHHHCCCCEEEEEEECHHHEE
Q ss_conf             48603789998887449983799983223242
Q gi|254780658|r   50 YGRGYYDRAIADIRLEGKNPYLLGIAFDMQET   81 (113)
Q Consensus        50 ~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~   81 (113)
                      -|||=||..++.+.  ++..+.+|.|+....+
T Consensus       283 ~gGGRYD~L~~~fg--g~~~PAvGfa~gieRi  312 (417)
T PRK00037        283 CGGGRYDGLVEQFG--GPPTPAVGFAIGIERL  312 (417)
T ss_pred             ECCCCHHHHHHHHC--CCCCCEEEEEECHHHH
T ss_conf             25873157899848--9978747898639999


No 12 
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase; InterPro: IPR014186   This entry describes proteins from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (3.1.2.12 from EC). Eukaryotic members, particularly the human protein, are better known as esterase D (3.1.1.1 from EC), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well..
Probab=41.05  E-value=15  Score=18.65  Aligned_cols=58  Identities=22%  Similarity=0.256  Sum_probs=37.0

Q ss_pred             EEEEECCCCCCEECCCCCCCCCCCCCCC-CCCEEEEHHHHHC------------------------------------CC
Q ss_conf             3465348885246488870889998611-4667740142211------------------------------------10
Q gi|254780658|r    2 IFRQYENPTDLVKSAVGTLSPPSYAKEM-SPDLILMPLIAFD------------------------------------LK   44 (113)
Q Consensus         2 ~F~~~~~~~~l~~~~~gI~EP~~~~~~~-~~DlilVP~lafD------------------------------------~~   44 (113)
                      .|++-++.+.=..-+|++.-|+.-.... -|=|.+.-+|.+.                                    .+
T Consensus        14 ~fYRH~S~~c~~~m~F~vf~PPqA~~g~kVPvL~yLsGLTCT~en~m~Kag~~R~AAe~G~aLVaPDTSPR~~gi~gE~D   93 (279)
T TIGR02821        14 GFYRHKSETCGVPMTFAVFLPPQAAAGPKVPVLYYLSGLTCTEENFMIKAGAQRFAAEYGLALVAPDTSPRGTGIAGEDD   93 (279)
T ss_pred             EEEEECCEEECCCCEECCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
T ss_conf             56860355636862231468857733899723310000131157899877789999768907972678987777767865


Q ss_pred             HHHHCCCCEEH-HHHH
Q ss_conf             01112486037-8999
Q gi|254780658|r   45 GNRIGYGRGYY-DRAI   59 (113)
Q Consensus        45 G~RLG~GgGyY-DR~l   59 (113)
                      -+-+|.|.||| |-+=
T Consensus        94 ~wDfG~GAGFYvDAt~  109 (279)
T TIGR02821        94 EWDFGKGAGFYVDATE  109 (279)
T ss_pred             CCCCCCCCCCHHHHHH
T ss_conf             4214798752110220


No 13 
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=39.27  E-value=23  Score=17.55  Aligned_cols=36  Identities=17%  Similarity=0.233  Sum_probs=24.3

Q ss_pred             HHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECC
Q ss_conf             1124860378999888744998379998322324247
Q gi|254780658|r   47 RIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSC   83 (113)
Q Consensus        47 RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~   83 (113)
                      +-=-|||=||..++.+.. +...+.+|.|+....+-.
T Consensus       334 ~~i~gGGRYD~L~~~fG~-~~~~PAvGfaigidRl~~  369 (373)
T PRK12295        334 PPLAGGGRYDGLLTRLGA-GEPIPAVGFSIWLDRLAA  369 (373)
T ss_pred             CEEEECCCHHHHHHHHCC-CCCCCEEEEEEEHHHHHH
T ss_conf             706511653179998589-999863699970999853


No 14 
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=39.02  E-value=22  Score=17.73  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=22.2

Q ss_pred             CCCEEHHHHHHHHHHCCCCEEEEEEECHHHEEC
Q ss_conf             486037899988874499837999832232424
Q gi|254780658|r   50 YGRGYYDRAIADIRLEGKNPYLLGIAFDMQETS   82 (113)
Q Consensus        50 ~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~   82 (113)
                      -|||=||..++.+   +...+.+|.|.....+-
T Consensus       286 ~gGGRYD~L~~~f---G~~~PAvGfa~g~eRl~  315 (388)
T PRK12292        286 ARGGRYDDLGGRF---GRARPATGFSLDLDRLR  315 (388)
T ss_pred             CCCCCHHHHHHHH---CCCCCEEEEEECHHHHH
T ss_conf             0575664799983---89997158996399999


No 15 
>COG1332 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=38.19  E-value=5.1  Score=21.06  Aligned_cols=15  Identities=27%  Similarity=0.758  Sum_probs=10.5

Q ss_pred             HHCCCCEEHHHHHHH
Q ss_conf             112486037899988
Q gi|254780658|r   47 RIGYGRGYYDRAIAD   61 (113)
Q Consensus        47 RLG~GgGyYDR~l~~   61 (113)
                      +||+||||+-.|+-.
T Consensus       304 ~lG~GgG~~skTi~~  318 (369)
T COG1332         304 HLGFGGGWRSKTIGI  318 (369)
T ss_pred             EEECCCCEEEEEEEE
T ss_conf             984256525305665


No 16 
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=38.10  E-value=24  Score=17.48  Aligned_cols=29  Identities=24%  Similarity=0.508  Sum_probs=21.3

Q ss_pred             CCCEEHHHHHHHHHHCCCCEEEEEEECHHHE
Q ss_conf             4860378999888744998379998322324
Q gi|254780658|r   50 YGRGYYDRAIADIRLEGKNPYLLGIAFDMQE   80 (113)
Q Consensus        50 ~GgGyYDR~l~~~~~~~~~~~~igla~~~q~   80 (113)
                      =|||=||..++.+.  ++..+.+|.|+-...
T Consensus       282 ~gGGRYD~Lv~~fg--g~~~PavGfaiGieR  310 (424)
T CHL00201        282 CGGGRYDSLVEQLG--GPKTPAVGWAIGIER  310 (424)
T ss_pred             CCCCCCHHHHHHCC--CCCCCEEEEEECHHH
T ss_conf             37877077899729--999985778843999


No 17 
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=34.06  E-value=31  Score=16.90  Aligned_cols=49  Identities=22%  Similarity=0.257  Sum_probs=29.0

Q ss_pred             CCCCCEEEEHHHH---------HCCC-H-HHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHH
Q ss_conf             1146677401422---------1110-0-111248603789998887449983799983223
Q gi|254780658|r   28 EMSPDLILMPLIA---------FDLK-G-NRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDM   78 (113)
Q Consensus        28 ~~~~DlilVP~la---------fD~~-G-~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~   78 (113)
                      .+..|+-+++.+.         |..+ + .+-=-|||=||..++.+.+  ...+.+|.|+..
T Consensus       194 ~i~~D~~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~~~~--~~~pAvGfa~~l  253 (261)
T cd00773         194 KYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGG--EDVPAVGFAIGL  253 (261)
T ss_pred             EEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHHCC--CCCCEEEEEEEH
T ss_conf             399875126687576871999997898865726754430588997089--999758999609


No 18 
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=29.60  E-value=54  Score=15.63  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=33.4

Q ss_pred             CCCCCEEEEHHHH-HCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEEC
Q ss_conf             1146677401422-111001112486037899988874499837999832232424
Q gi|254780658|r   28 EMSPDLILMPLIA-FDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETS   82 (113)
Q Consensus        28 ~~~~DlilVP~la-fD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~   82 (113)
                      ....|.+++|+|+ |+.....| .-.|++|-....++.  . .+.+|+|+-.|+.-
T Consensus        34 l~~~d~iIlPGvG~f~~~~~~l-~~~~~~~~i~~~~~~--~-~PiLGIClG~QlL~   85 (198)
T cd01748          34 ILSADKLILPGVGAFGDAMANL-RERGLIEALKEAIAS--G-KPFLGICLGMQLLF   85 (198)
T ss_pred             HHHCCEEEECCCCCCHHHHHHH-HHCCHHHHHHHHHHC--C-CCEEEEEEEEEEEE
T ss_conf             8308989987887403444441-003819999999876--9-96899981145466


No 19 
>pfam11959 DUF3473 Domain of unknown function (DUF3473). This presumed domain is functionally uncharacterized. This domain is found in bacteria and archaea. This domain is about 130 amino acids in length. This domain is found associated with pfam01522. This domain has two completely conserved residues (P and H) that may be functionally important.
Probab=29.21  E-value=44  Score=16.08  Aligned_cols=51  Identities=20%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             CCEECCCCCCCCCCCCCCCCC--CEEEEHHHHHCCCHHHHCCCCEEHHHHHHH
Q ss_conf             524648887088999861146--677401422111001112486037899988
Q gi|254780658|r   11 DLVKSAVGTLSPPSYAKEMSP--DLILMPLIAFDLKGNRIGYGRGYYDRAIAD   61 (113)
Q Consensus        11 ~l~~~~~gI~EP~~~~~~~~~--DlilVP~lafD~~G~RLG~GgGyYDR~l~~   61 (113)
                      +...+.||+++-+..--....  .++=.|.....--|.+|-.|||.|=|+|.-
T Consensus         5 P~~hd~yG~p~~p~~P~~~~~~~~i~EfP~~t~~~~g~~lP~~GGgyfRl~P~   57 (133)
T pfam11959         5 PVRHDHYGMPDAPRFPFRPETGGGLVEFPVTTTPLGGRNLPAGGGGYFRLLPY   57 (133)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEHHCCCCCEEECCCEEHHHCCH
T ss_conf             22458789999988884407999658944440000680031407511403849


No 20 
>KOG0967 consensus
Probab=28.58  E-value=21  Score=17.76  Aligned_cols=72  Identities=17%  Similarity=0.284  Sum_probs=39.6

Q ss_pred             CEEEEHHHHHCCCHHHHCCCCEE----HHHHHHHHHHCCCCEEEEEEECHHHEECCCCCCCCCCCCCEEECCCCEEEECH
Q ss_conf             67740142211100111248603----78999888744998379998322324247899844751158998985597003
Q gi|254780658|r   32 DLILMPLIAFDLKGNRIGYGRGY----YDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQFST  107 (113)
Q Consensus        32 DlilVP~lafD~~G~RLG~GgGy----YDR~l~~~~~~~~~~~~igla~~~q~~~~ip~e~hD~~ld~iiTe~~~~~f~~  107 (113)
                      .+-+||.-|+-.+|.|.|.+|||    ||--=..+..    +-.||-.|+-+.+.++-.   +.....+.++...|+|..
T Consensus       560 slDLv~iga~~G~GrrtG~yg~fLlacyn~dteefqs----iCKigtGFsD~~l~e~~~---~l~~~~~~~~~~~y~~d~  632 (714)
T KOG0967         560 SLDLVVIGAYYGRGRRTGWYGGFLLACYNPDTEEFQS----ICKIGTGFSDEFLQELHE---SLSSTVIDSPKPYYRFDE  632 (714)
T ss_pred             CEEEEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHH----HHHHCCCCCHHHHHHHHH---HHHHCCCCCCHHHCCCCC
T ss_conf             2223553000035522443442567764586288888----876167777789999878---753213568576502276


Q ss_pred             HHC
Q ss_conf             330
Q gi|254780658|r  108 EHI  110 (113)
Q Consensus       108 ~~~  110 (113)
                      +..
T Consensus       633 s~k  635 (714)
T KOG0967         633 SLK  635 (714)
T ss_pred             CCC
T ss_conf             679


No 21 
>pfam01686 Adeno_Penton_B Adenovirus penton base protein. This family consists of various adenovirus penton base proteins, from both the Mastadenoviradae having mammalian hosts and the Aviadenoviradae having avian hosts. The penton base is a major structural protein forming part of the penton which consists of a base and a fibre, the pentons hold a morphologically prominent position at the vertex capsomer in the adenovirus particle. In mammalian adenovirus there is only one tail on each base where as in avian adenovirus there are two.
Probab=27.02  E-value=26  Score=17.31  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=17.2

Q ss_pred             CCCCCCEEEEHHHHHCCCHHHH
Q ss_conf             6114667740142211100111
Q gi|254780658|r   27 KEMSPDLILMPLIAFDLKGNRI   48 (113)
Q Consensus        27 ~~~~~DlilVP~lafD~~G~RL   48 (113)
                      +.-.||++|.|+.|+|=.-.||
T Consensus       196 kafHpDIvLlPgCaVDFT~SRL  217 (454)
T pfam01686       196 KAFHPDIVLLPGCAVDFTYSRL  217 (454)
T ss_pred             CCCCCCEEECCCCEEECCHHHH
T ss_conf             3447877962884020517665


No 22 
>PRK13175 consensus
Probab=24.33  E-value=58  Score=15.46  Aligned_cols=51  Identities=22%  Similarity=0.324  Sum_probs=34.9

Q ss_pred             CCCCCEEEEHHHH-HCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEEC
Q ss_conf             1146677401422-111001112486037899988874499837999832232424
Q gi|254780658|r   28 EMSPDLILMPLIA-FDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETS   82 (113)
Q Consensus        28 ~~~~DlilVP~la-fD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~   82 (113)
                      ....|.+++|+++ |+..-.+| .-.|++|-....++.   ..+.+|+|+-.|+.-
T Consensus        37 i~~~d~lILPGvGsf~~~~~~l-~~~~l~~~i~~~~~~---g~PiLGIClGmQlL~   88 (206)
T PRK13175         37 LLAADALILPGVGAFDPAMQNL-RSRGLIPPIKDAIAS---GKPFLGICLGLQLLF   88 (206)
T ss_pred             HHCCCEEEECCCCCCHHHHHHH-HHCCCHHHHHHHHHC---CCCEEEEEHHHHHHH
T ss_conf             8328928968998526788755-531871689999856---997799867866761


No 23 
>pfam10001 DUF2242 Uncharacterized protein conserved in bacteria (DUF2242). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=23.68  E-value=37  Score=16.51  Aligned_cols=17  Identities=18%  Similarity=0.184  Sum_probs=8.6

Q ss_pred             CCCCCCCCCCCCEEECC
Q ss_conf             78998447511589989
Q gi|254780658|r   83 CIQAEATDIRLHAILTE   99 (113)
Q Consensus        83 ~ip~e~hD~~ld~iiTe   99 (113)
                      .+|....|-.|=-|-.|
T Consensus        86 SlP~~ss~DslVKV~sE  102 (121)
T pfam10001        86 SLPFSSSDDSLVKVGSE  102 (121)
T ss_pred             EECCCCCCCCEEEEEEE
T ss_conf             60146788637887102


No 24 
>PRK13178 consensus
Probab=23.56  E-value=70  Score=15.02  Aligned_cols=52  Identities=17%  Similarity=0.078  Sum_probs=31.8

Q ss_pred             CCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECC
Q ss_conf             1466774014221110011124860378999888744998379998322324247
Q gi|254780658|r   29 MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSC   83 (113)
Q Consensus        29 ~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~   83 (113)
                      .+.|.+|+|+|+==.++.+--.=.|+.+...... ..+  -+.+|+|.-.|+.-+
T Consensus        36 ~~~d~lIlPGVGsf~~~m~~L~~~~l~~~i~~~~-~~g--kpiLGIClGmQlLf~   87 (213)
T PRK13178         36 QGAAGIIFPGVGAAGQAMNELRTTGLDEVLREQV-QAG--KPLLGICVGCQIMLD   87 (213)
T ss_pred             HHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHH-HCC--CCEEEEEHHHEEEEC
T ss_conf             4399899899885699999875006289999874-369--957998424555541


No 25 
>PRK13177 consensus
Probab=21.52  E-value=77  Score=14.79  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             CCCCCEEEEHHHH-HCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECCC
Q ss_conf             1146677401422-11100111248603789998887449983799983223242478
Q gi|254780658|r   28 EMSPDLILMPLIA-FDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCI   84 (113)
Q Consensus        28 ~~~~DlilVP~la-fD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~i   84 (113)
                      ...-|.+++|+|+ |+..-.+|=-=.|++|.........+  .+.+|+|.-.|+.-+-
T Consensus        39 i~~~d~lIlPGVGsF~~~m~~Lk~~~~~~~~i~~~~~~~~--~piLGICLGmQlLf~~   94 (207)
T PRK13177         39 VRRADRVVLPGVGAFAACMGGLRAIPGMVEAMEERVLEGG--APFLGICVGMQLLADR   94 (207)
T ss_pred             HHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCC--CCEEEECHHHHHHHHC
T ss_conf             8359979989978789999776410444899999999769--9569981878857657


Done!