HHsearch results for GI: 254780658 and protein with PDBid: 1wkc_A
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus HB8} SCOP: c.124.1.6
Probab=100.00 E-value=1.1e-38 Score=225.43 Aligned_cols=100 Identities=22% Similarity=0.441 Sum_probs=88.7
Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCC-CCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 93465348885246488870889998-61146677401422111001112486037899988874499837999832232
Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYA-KEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQ 79 (113)
Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~-~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q 79 (113)
|.|+.| ++|++|+|||+||.... ....+|++||||||||++|+|||||||||||+|+++ ++.+||+||++|
T Consensus 75 l~~~~~---~~l~~~~~GI~EP~~~~~~~~~~DliiVP~lafD~~G~RLGyGgGyYDR~L~~~-----~~~~igl~~~~q 146 (184)
T 1wkc_A 75 LTVHPF---GPLAPGPFGLLEPTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV-----RAATVGVVPQAL 146 (184)
T ss_dssp EEEEES---CCBC-------CBCSCCBCGGGCSEEEECCSEEETTSCEECCSSCHHHHHHHHC-----CSEEEEECCGGG
T ss_pred EEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCEEECCCCHHHHHHHHC-----CCCEEEEEEHHH
T ss_conf 699768---876627777646643445766564586143688077853407984477777445-----898899977540
Q ss_pred EECCCCCCCCCCCCCEEECCCCEEEECHH
Q ss_conf 42478998447511589989855970033
Q gi|254780658|r 80 ETSCIQAEATDIRLHAILTESRFSQFSTE 108 (113)
Q Consensus 80 ~~~~ip~e~hD~~ld~iiTe~~~~~f~~~ 108 (113)
+++++|.|+||++||+||||+++++|.+.
T Consensus 147 ~~~~ip~e~hDi~ld~iiTe~gi~~~~~~ 175 (184)
T 1wkc_A 147 LFPALPRDPWDVPVDHLATEAGVEAVKRP 175 (184)
T ss_dssp EESCCCCCTTCCCCSEEEETTEEEECCCC
T ss_pred EECCCCCCCCCCCCCEEEECCCCEEECCC
T ss_conf 70768987213377999968657793789