Query gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 113 No_of_seqs 112 out of 1985 Neff 6.0 Searched_HMMs 13730 Date Wed Jun 1 09:01:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780658.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1soua_ c.124.1.6 (A:) Hypothe 100.0 1.2E-40 8.4E-45 234.5 9.0 103 1-108 80-184 (194) 2 d1wkca_ c.124.1.6 (A:) Hypothe 100.0 3E-39 2.2E-43 227.1 7.8 99 1-107 75-174 (175) 3 d1sbqa_ c.124.1.6 (A:) 5,10-me 100.0 6E-33 4.3E-37 193.6 4.8 80 11-100 85-164 (164) 4 d2abwa1 c.23.16.1 (A:2-219) Py 42.1 4.1 0.0003 19.1 1.1 53 28-82 40-93 (218) 5 d1z7ma1 d.104.1.1 (A:6-323) AT 30.7 6.9 0.0005 17.9 0.7 30 45-78 277-306 (318) 6 d2nv0a1 c.23.16.1 (A:1-195) Hy 29.7 13 0.00097 16.4 2.1 54 27-84 35-88 (195) 7 d1wu7a2 d.104.1.1 (A:3-329) Hi 24.4 14 0.00098 16.4 1.3 36 42-80 277-314 (327) 8 d1k9vf_ c.23.16.1 (F:) GAT sub 22.8 20 0.0015 15.5 2.0 51 28-82 40-91 (200) 9 d1h4vb2 d.104.1.1 (B:2-325) Hi 18.7 18 0.0013 15.7 1.0 32 47-80 279-310 (324) 10 d1q7ra_ c.23.16.1 (A:) Hypothe 18.1 32 0.0024 14.4 2.5 52 28-83 41-92 (202) No 1 >d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=1.2e-40 Score=234.46 Aligned_cols=103 Identities=28% Similarity=0.542 Sum_probs=92.6 Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCCC--CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHH Q ss_conf 934653488852464888708899986--114667740142211100111248603789998887449983799983223 Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYAK--EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDM 78 (113) Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~~--~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~ 78 (113) |.|+.|.+.+.|.+|+|||+||..... ...+|++||||||||++|+|||||||||||+|+++ ++.+||+||++ T Consensus 80 m~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~iDlilVP~lafD~~G~RlG~G~GyYDR~L~~~-----~~~~igl~~~~ 154 (194) T d1soua_ 80 ISLYRVHSPACLGVGAFGIMEPVEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRV-----KGLKVGVAYSF 154 (194) T ss_dssp EEEEEESSSCCCEECSSSCEECCSSEEECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHHHHHC-----CSEEEEECCGG T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEHHHHHHCC-----CCCEEEEEECC T ss_conf 2331047874200001124688745424555445510537888655871246777588765116-----89889998202 Q ss_pred HEECCCCCCCCCCCCCEEECCCCEEEECHH Q ss_conf 242478998447511589989855970033 Q gi|254780658|r 79 QETSCIQAEATDIRLHAILTESRFSQFSTE 108 (113) Q Consensus 79 q~~~~ip~e~hD~~ld~iiTe~~~~~f~~~ 108 (113) |+++++|.|+||++||+||||+++++|.+. T Consensus 155 Q~~~~ip~e~hD~~ld~iiTe~~i~~~~~~ 184 (194) T d1soua_ 155 QVFERLPRDAWDIPVDVLVTEKNVRRLRDG 184 (194) T ss_dssp GBCSCCCCCSCCCCCSEEECSSCEEESCCC T ss_pred EECCCCCCCCCCEECCEEEECCCEEEECCC T ss_conf 030788998708078999976124995699 No 2 >d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=3e-39 Score=227.06 Aligned_cols=99 Identities=22% Similarity=0.447 Sum_probs=87.7 Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCC-CCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHH Q ss_conf 93465348885246488870889998-61146677401422111001112486037899988874499837999832232 Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYA-KEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQ 79 (113) Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~-~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q 79 (113) |.|+.| ++|++|+|||+||.... ....+|++|||+||||++|+|||||||||||+|+++ ++.+||+||++| T Consensus 75 l~~~~~---~~l~~~~~gI~EP~~~~~~~~~~DliivP~vafD~~G~RlG~G~GyYDR~L~~~-----~~~~igl~~~~q 146 (175) T d1wkca_ 75 LTVHPF---GPLAPGPFGLLEPTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV-----RAATVGVVPQAL 146 (175) T ss_dssp EEEEES---CCBC-------CBCSCCBCGGGCSEEEECCSEEETTSCEECCSSCHHHHHHHHC-----CSEEEEECCGGG T ss_pred EEECCH---HHCCHHHHHCCCCCCCCCCCCCCCEEEEEEHHEEECCCCCCCCCCHHHHHHHHC-----CCCEEEEEEHHH T ss_conf 132212---101034432023222202356664898400101203740145761499888656-----997899975330 Q ss_pred EECCCCCCCCCCCCCEEECCCCEEEECH Q ss_conf 4247899844751158998985597003 Q gi|254780658|r 80 ETSCIQAEATDIRLHAILTESRFSQFST 107 (113) Q Consensus 80 ~~~~ip~e~hD~~ld~iiTe~~~~~f~~ 107 (113) +++++|.|+||++||+||||+++++|.+ T Consensus 147 ~~~~ip~e~hDi~ld~iiTe~gi~~~k~ 174 (175) T d1wkca_ 147 LFPALPRDPWDVPVDHLATEAGVEAVKR 174 (175) T ss_dssp EESCCCCCTTCCCCSEEEETTEEEECCC T ss_pred EECCCCCCCCCCCCCEEEECCCCEEECC T ss_conf 6177899840440799995743478158 No 3 >d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]} Probab=99.97 E-value=6e-33 Score=193.60 Aligned_cols=80 Identities=29% Similarity=0.644 Sum_probs=69.1 Q ss_pred CCEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECCCCCCCCC Q ss_conf 52464888708899986114667740142211100111248603789998887449983799983223242478998447 Q gi|254780658|r 11 DLVKSAVGTLSPPSYAKEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATD 90 (113) Q Consensus 11 ~l~~~~~gI~EP~~~~~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~ip~e~hD 90 (113) .+....+|+.|| ..+|++|||+||||++|+|||||||||||||++++ +++++|||||++|+++ +|.|+|| T Consensus 85 ~~~~~~~~~~eP------~~iDliivP~lafD~~G~RLGyGgGyYDR~L~~~~---~~~~~igla~~~Q~~~-~~~e~hD 154 (164) T d1sbqa_ 85 IFIDQETNTFEP------NQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKGD-FLADPWD 154 (164) T ss_dssp EEECTTCCEECG------GGCCEEEEECSEECTTCCEECCSSCHHHHHGGGCC---SCCCEEEEECGGGBCC-CCCCTTS T ss_pred EECCCCCCCCCC------CCCCEEEEEEHEEEEECCCCCCCCCHHHHHHHHCC---CCCCEEEEEEHHHCCC-CCCCCCC T ss_conf 001125544587------65678995012256414765146580999998667---7898999986442358-8997013 Q ss_pred CCCCEEECCC Q ss_conf 5115899898 Q gi|254780658|r 91 IRLHAILTES 100 (113) Q Consensus 91 ~~ld~iiTe~ 100 (113) ++||+||||+ T Consensus 155 i~ld~iiTek 164 (164) T d1sbqa_ 155 VQLDLIINDE 164 (164) T ss_dssp CCCSEEEECC T ss_pred CCCCEEECCC T ss_conf 4179896989 No 4 >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Probab=42.09 E-value=4.1 Score=19.13 Aligned_cols=53 Identities=11% Similarity=-0.049 Sum_probs=30.8 Q ss_pred CCCCCEEEEHHHH-HCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEEC Q ss_conf 1146677401422-111001112486037899988874499837999832232424 Q gi|254780658|r 28 EMSPDLILMPLIA-FDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETS 82 (113) Q Consensus 28 ~~~~DlilVP~la-fD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~ 82 (113) ..+.|.+|+|+++ |......+---.+..|..+...... .-+.+|+|+-.|+.. T Consensus 40 l~~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~--gkPilGIC~G~QlL~ 93 (218) T d2abwa1 40 LGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVL--KKPIWGTCAGCILLS 93 (218) T ss_dssp HHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTS--CCCEEEETHHHHHTE T ss_pred HHHCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHC--CCEEEEECHHHHHHH T ss_conf 840888997688863799998877456667899999873--985998237788998 No 5 >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Probab=30.70 E-value=6.9 Score=17.95 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=20.3 Q ss_pred HHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHH Q ss_conf 0111248603789998887449983799983223 Q gi|254780658|r 45 GNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDM 78 (113) Q Consensus 45 G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~ 78 (113) +..|+ |||-||..++.+. .+.+.+|.+... T Consensus 277 ~~~i~-~GGRYD~L~~~~g---~~~~avGfsi~l 306 (318) T d1z7ma1 277 NQPIL-SGGRYDQLLSNFQ---EEAFAIGFCCHM 306 (318) T ss_dssp EEEEE-EEEECHHHHHTSS---SCCCCEEEEEEH T ss_pred CCEEE-ECCCHHHHHHHCC---CCCCEEEEEEEH T ss_conf 88478-8944578898509---998779999569 No 6 >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Probab=29.73 E-value=13 Score=16.43 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=31.1 Q ss_pred CCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECCC Q ss_conf 6114667740142211100111248603789998887449983799983223242478 Q gi|254780658|r 27 KEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCI 84 (113) Q Consensus 27 ~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~i 84 (113) .....|.+++|+-.++.. ..+-.=.|..+......+ ++ . +.+|+|+-.|+..+. T Consensus 35 ~l~~~D~lIlPGG~~~~~-~~~~~~~~~~~~I~~~~~-~g-~-pilGIC~G~Qll~~~ 88 (195) T d2nv0a1 35 QLNEVDGLILPGGESTTM-RRLIDTYQFMEPLREFAA-QG-K-PMFGTCAGLIILAKE 88 (195) T ss_dssp GGGGCSEEEECCSCHHHH-HHHHHHTTCHHHHHHHHH-TT-C-CEEEETHHHHHHSBC T ss_pred HHHHCCEEEECCCCCCHH-HHHHHHCHHCCHHHHHHH-HC-C-EEEECCCCHHHHHHH T ss_conf 983188799779984479-997443100103443322-02-1-244005567999866 No 7 >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=24.42 E-value=14 Score=16.39 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=23.7 Q ss_pred CCCHH-H-HCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHE Q ss_conf 11001-1-124860378999888744998379998322324 Q gi|254780658|r 42 DLKGN-R-IGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQE 80 (113) Q Consensus 42 D~~G~-R-LG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~ 80 (113) +.+|. + |+ |||=||..++.+.+ +..+.+|.++..-. T Consensus 277 ~~~~~~~~i~-~GGRYD~L~~~f~g--~~~pAvGfsl~~~~ 314 (327) T d1wu7a2 277 DRSGQFRAIL-GGGRYDNLASLMSG--ESVPAVGFGMGDAV 314 (327) T ss_dssp ETTSSCSCSS-EEEECTTHHHHHHS--CCCCEEEEEEEHHH T ss_pred ECCCCCCEEE-ECCCCHHHHHHCCC--CCCCEEEEEEEHHH T ss_conf 6689716054-36542688986499--98886889832999 No 8 >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Probab=22.81 E-value=20 Score=15.46 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=29.0 Q ss_pred CCCCCEEEEHHHH-HCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEEC Q ss_conf 1146677401422-111001112486037899988874499837999832232424 Q gi|254780658|r 28 EMSPDLILMPLIA-FDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETS 82 (113) Q Consensus 28 ~~~~DlilVP~la-fD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~ 82 (113) ....|.+++|+++ |+..-.+| .-.|..+.....++ .+.+..|+|+=.|+.. T Consensus 40 ~~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~---~~~PiLGIClG~QlL~ 91 (200) T d1k9vf_ 40 NDLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVE---DERYVVGVCLGMQLLF 91 (200) T ss_dssp SCCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHH---TTCEEEEETHHHHTTE T ss_pred HHCCCEEEECCHHHHHHHHHHH-HCCCCCCCCCCCCC---CCCEEEEEECCEEEEE T ss_conf 6005747971707878888753-10233121211134---5515898732426776 No 9 >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Probab=18.69 E-value=18 Score=15.73 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=21.3 Q ss_pred HHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHE Q ss_conf 1124860378999888744998379998322324 Q gi|254780658|r 47 RIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQE 80 (113) Q Consensus 47 RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~ 80 (113) +-=-|||=||..++.+. ++....+|.++..-. T Consensus 279 ~~i~~GGRYD~L~~~f~--~~~~pAvGfsi~ld~ 310 (324) T d1h4vb2 279 SALGGGGRYDGLSELLG--GPRVPGVGFAFGVER 310 (324) T ss_dssp CEEEEEEECTTHHHHTT--CCCCCEEEEEEEHHH T ss_pred CEEECCCCCHHHHHHCC--CCCCCEEEEEEEHHH T ss_conf 71521776378998649--999975899953999 No 10 >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Probab=18.09 E-value=32 Score=14.37 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=29.9 Q ss_pred CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECC Q ss_conf 11466774014221110011124860378999888744998379998322324247 Q gi|254780658|r 28 EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSC 83 (113) Q Consensus 28 ~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~ 83 (113) ..+.|.+|+|+-+++..-..+-. .+..| .+......+ -+.+|+|+-.|++.+ T Consensus 41 l~~~D~lIlPGG~~~~~~~~l~~-~~l~~-~I~~~~~~g--kPiLGIClG~Qll~~ 92 (202) T d1q7ra_ 41 LEGLDGLVLPGGESTTMRRLIDR-YGLME-PLKQFAAAG--KPMFGTCAGLILLAK 92 (202) T ss_dssp GTTCSEEEECCCCHHHHHHHHHH-TTCHH-HHHHHHHTT--CCEEEETTHHHHHEE T ss_pred HHCCCEEEECCCCCHHHHHHHHH-HHHHH-HHHHHCCCC--CEEEEEEHHHHHHHH T ss_conf 71289899879884799987666-67899-886522223--146652013577644 Done!