RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate
cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62]
(113 letters)
>gnl|CDD|162988 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase.
This enzyme, 5,10-methenyltetrahydrofolate synthetase,
is also called 5-formyltetrahydrofolate cycloligase.
Function of bacterial proteins in this family was
inferred originally from the known activity of
eukaryotic homologs. Recently, activity was shown
explicitly for the member from Mycoplasma pneumonia.
Members of this family from alpha- and
gamma-proteobacteria, designated ygfA, are often found
in an operon with 6S structural RNA, and show a similar
pattern of high expression during stationary phase. The
function may be to deplete folate to slow 1-carbon
biosynthetic metabolism.
Length = 181
Score = 91.6 bits (228), Expect = 4e-20
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 1 MIFRQYENPTDLVKSAVGTLSPPSYAKE-MSP---DLILMPLIAFDLKGNRIGYGRGYYD 56
+ FR + L K G L PP + E + P DLI++P +AFD +G R+GYG GYYD
Sbjct: 82 LFFRIWSPSDLLTKGKFGILEPPGDSTEPVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYD 141
Query: 57 RAIADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTE 99
R +A+++ ++G+AFD Q + E D+ + AI+TE
Sbjct: 142 RFLANLK---GKTVVVGLAFDFQLVDELPREPHDVPVDAIITE 181
>gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family
protein; Provisional.
Length = 182
Score = 56.1 bits (135), Expect = 2e-09
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 1 MIFRQYENPTDLVKSAVGTLSPPSYAKEMSP----DLILMPLIAFDLKGNRIGYGRGYYD 56
++F Y ++LV + + P +++ P D+++ PL+AFD G R+G G G+YD
Sbjct: 76 LLFLNYHPQSELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYD 135
Query: 57 RAIADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESR 101
R + + + P +G A D Q + E DI L A++T S+
Sbjct: 136 RTLQNWQHYKTQP--VGYAHDCQLVEKLPVEEWDIPLPAVVTPSK 178
>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase.
Length = 211
Score = 55.4 bits (134), Expect = 3e-09
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 11 DLVKSAVGTLSPPSYAKEMSP-----------DLILMPLIAFDLKGNRIGYGRGYYDRAI 59
DLV +++ L P + +P DL+L+P +AFD G R+G G GYYD +
Sbjct: 101 DLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGGYYDTFL 160
Query: 60 ADIRLEGKN-----PYLLGIAFDMQ--ETSCIQAEATDIRLHAILTES 100
+ + K P L+ +++ Q + + + TD+ + A++T S
Sbjct: 161 SKYQELAKEKGWKQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPS 208
>gnl|CDD|182871 PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.
Length = 407
Score = 26.4 bits (59), Expect = 1.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 19 TLSPPSYAKEMSPDLIL 35
T SPPSYA+E+ ++
Sbjct: 52 TGSPPSYARELYNRFVV 68
>gnl|CDD|173539 PTZ00346, PTZ00346, histone deacetylase; Provisional.
Length = 429
Score = 24.6 bits (53), Expect = 6.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 24 SYAKEMSPDLILMPLIAFDLKGNRIG------YGRGYYDRAIADI 62
S + SPD I++ A L G+R+G +G G +A+ D+
Sbjct: 262 SIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDL 306
>gnl|CDD|184488 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 24.0 bits (53), Expect = 8.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 31 PDLILMPLIAFDLK 44
P LI +P FD +
Sbjct: 210 PHLIYLPERPFDEE 223
>gnl|CDD|133872 PHA00380, PHA00380, tail protein.
Length = 599
Score = 24.1 bits (52), Expect = 9.1
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 24 SYAKEMSPDLILMP---LIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQE 80
+ K L++ P I D KGNR+ Y Y + + I++ G +++ +Q+
Sbjct: 318 VFTKPTESKLLMYPYCVTIITDFKGNRVEYKLEYINGSKLKIQVRGSLGVSNKVSYSVQD 377
Query: 81 TSCIQAEATDIRLHAILTES 100
+ + D L A + S
Sbjct: 378 YNADSELSGDQNLTASIEAS 397
>gnl|CDD|177924 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 23.8 bits (52), Expect = 9.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 9 PTDLVKSAVGTLSPPSYAKEM 29
PT VK AV S P+ AKEM
Sbjct: 112 PTLPVKRAVVDFSSPNIAKEM 132
>gnl|CDD|150944 pfam10350, DUF2428, Putative death-receptor fusion protein
(DUF2428). This is a family of proteins conserved from
plants to humans. The function is not known. Several
members have been annotated as being HEAT
repeat-containing proteins while others are designated
as death-receptor interacting proteins, but neither of
these could be confirmed.
Length = 241
Score = 23.8 bits (52), Expect = 9.8
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 71 LLGIAFDMQETSCIQAEATDI-RLHA------ILTESRFSQFSTEHIEK 112
LL IA + + +D+ ++HA I T+SR ++ + +E+
Sbjct: 180 LLEIA--KKPVEQAADKGSDLPQVHALNVLKAIFTDSRLAEDTEPFVER 226
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.138 0.396
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,895,940
Number of extensions: 111868
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 24
Length of query: 113
Length of database: 5,994,473
Length adjustment: 78
Effective length of query: 35
Effective length of database: 4,309,049
Effective search space: 150816715
Effective search space used: 150816715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)