RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62] (113 letters) >gnl|CDD|162988 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. Length = 181 Score = 91.6 bits (228), Expect = 4e-20 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 7/103 (6%) Query: 1 MIFRQYENPTDLVKSAVGTLSPPSYAKE-MSP---DLILMPLIAFDLKGNRIGYGRGYYD 56 + FR + L K G L PP + E + P DLI++P +AFD +G R+GYG GYYD Sbjct: 82 LFFRIWSPSDLLTKGKFGILEPPGDSTEPVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYD 141 Query: 57 RAIADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTE 99 R +A+++ ++G+AFD Q + E D+ + AI+TE Sbjct: 142 RFLANLK---GKTVVVGLAFDFQLVDELPREPHDVPVDAIITE 181 >gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional. Length = 182 Score = 56.1 bits (135), Expect = 2e-09 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 6/105 (5%) Query: 1 MIFRQYENPTDLVKSAVGTLSPPSYAKEMSP----DLILMPLIAFDLKGNRIGYGRGYYD 56 ++F Y ++LV + + P +++ P D+++ PL+AFD G R+G G G+YD Sbjct: 76 LLFLNYHPQSELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYD 135 Query: 57 RAIADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESR 101 R + + + P +G A D Q + E DI L A++T S+ Sbjct: 136 RTLQNWQHYKTQP--VGYAHDCQLVEKLPVEEWDIPLPAVVTPSK 178 >gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase. Length = 211 Score = 55.4 bits (134), Expect = 3e-09 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 18/108 (16%) Query: 11 DLVKSAVGTLSPPSYAKEMSP-----------DLILMPLIAFDLKGNRIGYGRGYYDRAI 59 DLV +++ L P + +P DL+L+P +AFD G R+G G GYYD + Sbjct: 101 DLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGGYYDTFL 160 Query: 60 ADIRLEGKN-----PYLLGIAFDMQ--ETSCIQAEATDIRLHAILTES 100 + + K P L+ +++ Q + + + TD+ + A++T S Sbjct: 161 SKYQELAKEKGWKQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPS 208 >gnl|CDD|182871 PRK10966, PRK10966, exonuclease subunit SbcD; Provisional. Length = 407 Score = 26.4 bits (59), Expect = 1.7 Identities = 8/17 (47%), Positives = 12/17 (70%) Query: 19 TLSPPSYAKEMSPDLIL 35 T SPPSYA+E+ ++ Sbjct: 52 TGSPPSYARELYNRFVV 68 >gnl|CDD|173539 PTZ00346, PTZ00346, histone deacetylase; Provisional. Length = 429 Score = 24.6 bits (53), Expect = 6.7 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Query: 24 SYAKEMSPDLILMPLIAFDLKGNRIG------YGRGYYDRAIADI 62 S + SPD I++ A L G+R+G +G G +A+ D+ Sbjct: 262 SIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDL 306 >gnl|CDD|184488 PRK14072, PRK14072, 6-phosphofructokinase; Provisional. Length = 416 Score = 24.0 bits (53), Expect = 8.2 Identities = 6/14 (42%), Positives = 8/14 (57%) Query: 31 PDLILMPLIAFDLK 44 P LI +P FD + Sbjct: 210 PHLIYLPERPFDEE 223 >gnl|CDD|133872 PHA00380, PHA00380, tail protein. Length = 599 Score = 24.1 bits (52), Expect = 9.1 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 24 SYAKEMSPDLILMP---LIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQE 80 + K L++ P I D KGNR+ Y Y + + I++ G +++ +Q+ Sbjct: 318 VFTKPTESKLLMYPYCVTIITDFKGNRVEYKLEYINGSKLKIQVRGSLGVSNKVSYSVQD 377 Query: 81 TSCIQAEATDIRLHAILTES 100 + + D L A + S Sbjct: 378 YNADSELSGDQNLTASIEAS 397 >gnl|CDD|177924 PLN02286, PLN02286, arginine-tRNA ligase. Length = 576 Score = 23.8 bits (52), Expect = 9.5 Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 9 PTDLVKSAVGTLSPPSYAKEM 29 PT VK AV S P+ AKEM Sbjct: 112 PTLPVKRAVVDFSSPNIAKEM 132 >gnl|CDD|150944 pfam10350, DUF2428, Putative death-receptor fusion protein (DUF2428). This is a family of proteins conserved from plants to humans. The function is not known. Several members have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these could be confirmed. Length = 241 Score = 23.8 bits (52), Expect = 9.8 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 9/49 (18%) Query: 71 LLGIAFDMQETSCIQAEATDI-RLHA------ILTESRFSQFSTEHIEK 112 LL IA + + +D+ ++HA I T+SR ++ + +E+ Sbjct: 180 LLEIA--KKPVEQAADKGSDLPQVHALNVLKAIFTDSRLAEDTEPFVER 226 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.138 0.396 Gapped Lambda K H 0.267 0.0749 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,895,940 Number of extensions: 111868 Number of successful extensions: 170 Number of sequences better than 10.0: 1 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 24 Length of query: 113 Length of database: 5,994,473 Length adjustment: 78 Effective length of query: 35 Effective length of database: 4,309,049 Effective search space: 150816715 Effective search space used: 150816715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.0 bits)