RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate
cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
           acetylation, ATP-binding, cytoplasm, folate-binding,
           magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo
           sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
          Length = 203

 Score = 84.8 bits (209), Expect = 5e-18
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 1   MIFRQYENPTDLVKSAVGTLSPPSYAKEM---------SPDLILMPLIAFDLKGNRIGYG 51
           M   + E+P ++      + + P   +             DLI MP + FD  GNR+G G
Sbjct: 90  MDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRG 149

Query: 52  RGYYDRAIADIR-LEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTES 100
           +GYYD  +      +   PY L +AF  Q    +     D+++  +L E 
Sbjct: 150 KGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYED 199


>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI,
           protein structure initiative, northeast structural
           genomics consortium; NMR {Aquifex aeolicus} SCOP:
           c.124.1.6
          Length = 194

 Score = 71.9 bits (175), Expect = 4e-14
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 1   MIFRQYENPTDLVKSAVGTLSPPSYAKE--MSPDLILMPLIAFDLKGNRIGYGRGYYDRA 58
           +   +  +P  L   A G + P    +      D I +P +AFDL+G R+G+G+GYYDR 
Sbjct: 80  ISLYRVHSPACLGVGAFGIMEPVEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL 139

Query: 59  IADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQF 105
           +  ++        +G+A+  Q    +  +A DI +  ++TE    + 
Sbjct: 140 LKRVK-----GLKVGVAYSFQVFERLPRDAWDIPVDVLVTEKNVRRL 181


>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family protein; 10-
           methenyltetrahydrofolate synthetase, MTHFS, folate
           metabolism, structural genomics; HET: ADP; 1.6A
           {Bacillus anthracis}
          Length = 200

 Score = 68.4 bits (166), Expect = 4e-13
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 29  MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEA 88
              DL ++P +A+  +G RIGYG GYYDR +            L +A+  Q    I  E 
Sbjct: 125 DEIDLQIVPGVAYTERGERIGYGGGYYDRYLVH-----YKGKTLSLAYSFQMVEHIPVEP 179

Query: 89  TDIRLHAILTESRF 102
            D  +  I+TE   
Sbjct: 180 FDKNVEKIITEKGT 193


>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
           X-RAY, PSI, protein structure initiative; 2.50A
           {Bacillus subtilis}
          Length = 187

 Score = 64.1 bits (155), Expect = 7e-12
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 31  PDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATD 90
            DL+++P + FD+ G R+G+G GYYDR +++          + +  + Q  + +     D
Sbjct: 116 IDLMIVPGVCFDVNGFRVGFGGGYYDRYLSE-----YEGKTVSLLLECQLFAHVPRLPHD 170

Query: 91  IRLHAILTESRF 102
           I +H ++TE R 
Sbjct: 171 IPVHKLITEDRI 182


>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
           MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
           structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
           c.124.1.6 PDB: 1u3f_A* 1u3g_A*
          Length = 189

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 29  MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEA 88
              D  L+PL+ F+    R+G+G+GYYDR +  +    +    +GIA+  Q+   + A+ 
Sbjct: 122 NQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKGDFL-ADP 177

Query: 89  TDIRLHAILTE 99
            D++L  I+ +
Sbjct: 178 WDVQLDLIIND 188


>1wkc_A HB8 TT1367 protein; structural genomics, riken structural
           genomics/proteomics initiative, RSGI, unknown function;
           1.70A {Thermus thermophilus HB8} SCOP: c.124.1.6
          Length = 184

 Score = 62.6 bits (151), Expect = 2e-11
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 31  PDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATD 90
            DL+++P +AFD +G R+G+G+G+YDR + ++R        +G+         +  +  D
Sbjct: 103 LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGVVPQALLFPALPRDPWD 157

Query: 91  IRLHAILTESRFSQF 105
           + +  + TE+     
Sbjct: 158 VPVDHLATEAGVEAV 172


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.0 bits (53), Expect = 3.9
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 14 KSAVGTL--SPPSYAKEMSPDLIL 35
          K A+  L  S   YA + +P L +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42


>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
           transferase, predicted O-methyltransferase, PFAM
           PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium
           tumefaciens str}
          Length = 260

 Score = 24.3 bits (52), Expect = 6.5
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 7/37 (18%)

Query: 34  ILMPLIAFDLKGN-------RIGYGRGYYDRAIADIR 63
              PLI  +   +        +  GR  Y R +  IR
Sbjct: 219 FRAPLIMHETGSHAFTPFVDDLNNGRAAYARNVRAIR 255


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 963,665
Number of extensions: 40359
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 9
Length of query: 113
Length of database: 5,693,230
Length adjustment: 76
Effective length of query: 37
Effective length of database: 3,850,686
Effective search space: 142475382
Effective search space used: 142475382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)