RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62] (113 letters) >3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, acetylation, ATP-binding, cytoplasm, folate-binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203 Score = 84.8 bits (209), Expect = 5e-18 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%) Query: 1 MIFRQYENPTDLVKSAVGTLSPPSYAKEM---------SPDLILMPLIAFDLKGNRIGYG 51 M + E+P ++ + + P + DLI MP + FD GNR+G G Sbjct: 90 MDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRG 149 Query: 52 RGYYDRAIADIR-LEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTES 100 +GYYD + + PY L +AF Q + D+++ +L E Sbjct: 150 KGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYED 199 >1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194 Score = 71.9 bits (175), Expect = 4e-14 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%) Query: 1 MIFRQYENPTDLVKSAVGTLSPPSYAKE--MSPDLILMPLIAFDLKGNRIGYGRGYYDRA 58 + + +P L A G + P + D I +P +AFDL+G R+G+G+GYYDR Sbjct: 80 ISLYRVHSPACLGVGAFGIMEPVEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL 139 Query: 59 IADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQF 105 + ++ +G+A+ Q + +A DI + ++TE + Sbjct: 140 LKRVK-----GLKVGVAYSFQVFERLPRDAWDIPVDVLVTEKNVRRL 181 >2jcb_A 5-formyltetrahydrofolate cyclo-ligase family protein; 10- methenyltetrahydrofolate synthetase, MTHFS, folate metabolism, structural genomics; HET: ADP; 1.6A {Bacillus anthracis} Length = 200 Score = 68.4 bits (166), Expect = 4e-13 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 29 MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEA 88 DL ++P +A+ +G RIGYG GYYDR + L +A+ Q I E Sbjct: 125 DEIDLQIVPGVAYTERGERIGYGGGYYDRYLVH-----YKGKTLSLAYSFQMVEHIPVEP 179 Query: 89 TDIRLHAILTESRF 102 D + I+TE Sbjct: 180 FDKNVEKIITEKGT 193 >1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187 Score = 64.1 bits (155), Expect = 7e-12 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 31 PDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATD 90 DL+++P + FD+ G R+G+G GYYDR +++ + + + Q + + D Sbjct: 116 IDLMIVPGVCFDVNGFRVGFGGGYYDRYLSE-----YEGKTVSLLLECQLFAHVPRLPHD 170 Query: 91 IRLHAILTESRF 102 I +H ++TE R Sbjct: 171 IPVHKLITEDRI 182 >1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Length = 189 Score = 62.5 bits (151), Expect = 2e-11 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 29 MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEA 88 D L+PL+ F+ R+G+G+GYYDR + + + +GIA+ Q+ + A+ Sbjct: 122 NQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKGDFL-ADP 177 Query: 89 TDIRLHAILTE 99 D++L I+ + Sbjct: 178 WDVQLDLIIND 188 >1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus HB8} SCOP: c.124.1.6 Length = 184 Score = 62.6 bits (151), Expect = 2e-11 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 31 PDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATD 90 DL+++P +AFD +G R+G+G+G+YDR + ++R +G+ + + D Sbjct: 103 LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGVVPQALLFPALPRDPWD 157 Query: 91 IRLHAILTESRFSQF 105 + + + TE+ Sbjct: 158 VPVDHLATEAGVEAV 172 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 25.0 bits (53), Expect = 3.9 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%) Query: 14 KSAVGTL--SPPSYAKEMSPDLIL 35 K A+ L S YA + +P L + Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42 >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 Score = 24.3 bits (52), Expect = 6.5 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 7/37 (18%) Query: 34 ILMPLIAFDLKGN-------RIGYGRGYYDRAIADIR 63 PLI + + + GR Y R + IR Sbjct: 219 FRAPLIMHETGSHAFTPFVDDLNNGRAAYARNVRAIR 255 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.138 0.396 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 963,665 Number of extensions: 40359 Number of successful extensions: 104 Number of sequences better than 10.0: 1 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 9 Length of query: 113 Length of database: 5,693,230 Length adjustment: 76 Effective length of query: 37 Effective length of database: 3,850,686 Effective search space: 142475382 Effective search space used: 142475382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.6 bits)