BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate
cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate cyclo-ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 113

 Score =  235 bits (599), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MIFRQYENPTDLVKSAVGTLSPPSYAKEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIA 60
           MIFRQYENPTDLVKSAVGTLSPPSYAKEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIA
Sbjct: 1   MIFRQYENPTDLVKSAVGTLSPPSYAKEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIA 60

Query: 61  DIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQFSTEHIEKV 113
           DIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQFSTEHIEKV
Sbjct: 61  DIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQFSTEHIEKV 113


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 20.4 bits (41), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 54  YYDRAIADIRLEGKN 68
           YYD  IA + + GKN
Sbjct: 377 YYDSLIAKLIVHGKN 391


>gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 380

 Score = 20.4 bits (41), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 34  ILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNP 69
           I+ PL    +KG+ I  G G +D   +  ++    P
Sbjct: 176 IISPLSIDSIKGSVIAEGTGNFDNKRSAFKITANFP 211


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,531
Number of Sequences: 1233
Number of extensions: 2669
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 113
length of database: 328,796
effective HSP length: 63
effective length of query: 50
effective length of database: 251,117
effective search space: 12555850
effective search space used: 12555850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)