Query gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 274
No_of_seqs 135 out of 850
Neff 4.4
Searched_HMMs 39220
Date Sun May 29 20:41:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780659.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1692 Calcineurin-like phosp 100.0 0 0 809.4 26.3 266 1-270 1-266 (266)
2 TIGR00282 TIGR00282 conserved 100.0 0 0 444.4 17.0 257 1-261 1-263 (272)
3 PRK09558 ushA bifunctional UDP 99.1 1.6E-08 4.2E-13 76.0 16.6 180 2-182 36-256 (551)
4 pfam09587 PGA_cap Bacterial ca 99.1 1.7E-08 4.2E-13 76.0 16.1 181 2-189 1-221 (237)
5 smart00854 PGA_cap Bacterial c 99.1 1.9E-08 4.8E-13 75.6 16.3 174 2-189 1-223 (239)
6 COG0737 UshA 5'-nucleotidase/2 98.7 2.6E-06 6.7E-11 61.7 15.8 194 13-210 52-275 (517)
7 PRK09419 bifunctional 2',3'-cy 98.7 5.3E-06 1.3E-10 59.8 16.1 186 1-190 666-903 (1260)
8 pfam00149 Metallophos Calcineu 98.2 3E-05 7.5E-10 54.9 11.4 170 1-183 1-186 (186)
9 PRK09419 bifunctional 2',3'-cy 97.5 0.0075 1.9E-07 39.3 13.7 168 13-182 69-283 (1260)
10 PRK09420 cpdB bifunctional 2', 97.5 0.0023 5.9E-08 42.7 10.8 131 50-183 30-192 (578)
11 PRK09418 bifunctional 2',3'-cy 97.2 0.026 6.5E-07 35.9 13.8 187 13-211 66-310 (780)
12 KOG4419 consensus 97.0 0.018 4.6E-07 36.9 10.8 200 15-216 71-319 (602)
13 TIGR01530 nadN NAD nucleotidas 96.5 0.019 4.9E-07 36.7 7.7 165 13-189 32-224 (550)
14 PRK11907 bifunctional 2',3'-cy 95.7 0.22 5.6E-06 29.8 13.3 218 12-240 141-416 (810)
15 PRK02083 imidazole glycerol ph 93.2 0.81 2.1E-05 26.2 8.5 98 4-110 47-149 (253)
16 PRK05581 ribulose-phosphate 3- 92.7 0.61 1.6E-05 26.9 6.8 59 125-191 69-130 (220)
17 PRK08091 ribulose-phosphate 3- 92.0 0.32 8.2E-06 28.7 4.7 55 125-186 76-142 (235)
18 TIGR03572 WbuZ glycosyl amidat 91.0 1.5 3.7E-05 24.5 8.9 94 3-104 46-144 (232)
19 PRK02621 consensus 90.9 1.5 3.8E-05 24.4 9.0 95 3-105 46-146 (254)
20 PRK08005 ribulose-phosphate 3- 90.6 0.64 1.6E-05 26.8 5.1 52 125-183 66-120 (210)
21 PRK11340 phosphodiesterase Yae 90.0 1.8 4.5E-05 24.0 9.7 152 1-183 49-213 (270)
22 PRK09722 allulose-6-phosphate 90.0 1 2.6E-05 25.5 5.7 54 126-186 66-123 (227)
23 PRK08883 ribulose-phosphate 3- 89.5 1.6 4E-05 24.3 6.4 58 126-191 67-127 (220)
24 PRK02747 consensus 89.1 2.1 5.3E-05 23.5 6.8 99 3-110 46-152 (257)
25 PRK08745 ribulose-phosphate 3- 88.7 2.1 5.3E-05 23.5 6.5 53 126-185 71-126 (223)
26 COG2129 Predicted phosphoester 88.7 2.2 5.6E-05 23.3 9.0 178 1-214 4-192 (226)
27 PRK05437 isopentenyl pyrophosp 88.6 1.7 4.3E-05 24.1 6.0 22 44-65 195-216 (351)
28 PRK02145 consensus 87.9 2.5 6.3E-05 23.0 6.7 93 3-104 47-148 (257)
29 cd02811 IDI-2_FMN Isopentenyl- 87.7 1.8 4.5E-05 24.0 5.7 18 46-63 189-206 (326)
30 PRK11439 pphA serine/threonine 87.4 2.4 6E-05 23.1 6.2 72 2-80 18-89 (218)
31 PRK03220 consensus 87.2 2.7 6.9E-05 22.7 6.4 132 3-160 47-188 (257)
32 cd00429 RPE Ribulose-5-phospha 87.0 1.9 4.8E-05 23.8 5.5 55 125-186 65-122 (211)
33 PRK13586 1-(5-phosphoribosyl)- 86.8 2.2 5.5E-05 23.4 5.7 125 3-159 45-173 (231)
34 cd04731 HisF The cyclase subun 86.2 2.4 6.1E-05 23.1 5.6 93 3-104 43-140 (243)
35 PRK00748 1-(5-phosphoribosyl)- 86.0 3.2 8E-05 22.3 6.2 71 3-81 45-117 (241)
36 KOG3111 consensus 85.5 1.5 3.7E-05 24.5 4.3 54 125-185 72-128 (224)
37 PRK00166 apaH diadenosine tetr 85.3 2.9 7.3E-05 22.6 5.7 65 1-69 1-67 (275)
38 pfam00834 Ribul_P_3_epim Ribul 84.5 2.5 6.5E-05 22.9 5.1 59 125-191 65-126 (201)
39 PRK01033 imidazole glycerol ph 84.3 3.8 9.6E-05 21.8 6.4 87 3-97 46-137 (253)
40 PTZ00170 D-ribulose-5-phosphat 83.3 1.1 2.9E-05 25.2 2.9 58 125-189 71-131 (224)
41 PRK09453 phosphodiesterase; Pr 83.3 4.1 0.00011 21.6 8.0 96 1-115 1-104 (183)
42 TIGR02151 IPP_isom_2 isopenten 80.6 1.4 3.5E-05 24.7 2.5 44 18-66 176-219 (349)
43 PRK13597 imidazole glycerol ph 79.2 5.7 0.00015 20.7 6.4 81 3-91 47-132 (252)
44 pfam00875 DNA_photolyase DNA p 78.2 1.6 4.2E-05 24.2 2.3 49 20-68 78-126 (164)
45 PRK04281 consensus 77.7 6.3 0.00016 20.4 6.0 93 4-104 47-145 (254)
46 TIGR01163 rpe ribulose-phospha 77.2 2.8 7.1E-05 22.7 3.2 36 46-81 177-214 (216)
47 PRK13127 consensus 77.0 6.6 0.00017 20.2 5.5 48 22-70 79-126 (262)
48 pfam00977 His_biosynth Histidi 76.2 6.9 0.00018 20.1 6.3 81 3-91 45-130 (229)
49 pfam01993 MTD methylene-5,6,7, 74.1 7.9 0.0002 19.8 5.6 115 13-152 42-177 (276)
50 PRK09968 serine/threonine-spec 73.7 8 0.0002 19.7 6.1 64 2-69 16-79 (218)
51 pfam01522 Polysacc_deac_1 Poly 73.7 8 0.0002 19.7 4.9 54 15-76 17-71 (123)
52 PRK00830 consensus 73.2 7.4 0.00019 19.9 4.6 81 3-91 50-135 (273)
53 COG0036 Rpe Pentose-5-phosphat 71.3 4.1 0.00011 21.6 2.9 55 125-186 69-126 (220)
54 PRK05211 consensus 70.8 9.3 0.00024 19.3 6.6 80 3-90 37-121 (248)
55 COG1927 Mtd Coenzyme F420-depe 70.5 9.5 0.00024 19.2 6.0 115 13-152 43-178 (277)
56 pfam01884 PcrB PcrB family. Th 69.6 5.6 0.00014 20.7 3.3 53 46-100 19-78 (231)
57 PRK05096 guanosine 5'-monophos 69.1 10 0.00026 19.0 5.6 41 16-63 136-176 (347)
58 PRK01659 consensus 69.0 10 0.00026 19.0 5.9 80 4-91 47-131 (252)
59 COG1407 Predicted ICC-like pho 68.8 10 0.00026 19.0 6.0 56 14-69 47-108 (235)
60 CHL00200 trpA tryptophan synth 68.6 10 0.00027 19.0 5.9 23 45-67 28-50 (263)
61 PRK00994 F420-dependent methyl 68.2 11 0.00027 18.9 5.5 112 14-151 44-176 (276)
62 PRK13129 consensus 64.8 12 0.00031 18.5 5.9 47 17-67 5-54 (267)
63 PRK06256 biotin synthase; Vali 64.6 12 0.0003 18.6 4.1 41 16-63 125-165 (325)
64 PRK06512 thiamine-phosphate py 63.4 5.5 0.00014 20.7 2.3 22 55-76 35-57 (221)
65 cd03823 GT1_ExpE7_like This fa 63.3 13 0.00033 18.3 5.2 40 19-63 85-124 (359)
66 PHA02239 putative protein phos 62.8 13 0.00034 18.3 6.9 77 1-83 1-82 (235)
67 TIGR00078 nadC nicotinate-nucl 61.3 7.7 0.0002 19.8 2.7 44 17-67 219-262 (276)
68 COG0287 TyrA Prephenate dehydr 60.4 15 0.00038 18.0 6.6 133 47-204 14-148 (279)
69 cd04732 HisA HisA. Phosphorib 59.7 15 0.00039 17.9 6.3 81 3-91 45-130 (234)
70 TIGR00040 yfcE phosphodiestera 59.0 16 0.0004 17.8 5.7 64 1-68 1-65 (170)
71 COG1411 Uncharacterized protei 58.2 16 0.00041 17.8 5.4 132 1-160 1-166 (229)
72 PRK13790 phosphoribosylamine-- 58.0 16 0.00041 17.7 4.9 86 11-101 33-155 (415)
73 cd02922 FCB2_FMN Flavocytochro 57.3 17 0.00042 17.7 4.8 16 45-60 130-145 (344)
74 TIGR01768 GGGP-family geranylg 57.0 9.3 0.00024 19.3 2.5 32 44-75 201-233 (242)
75 TIGR01788 Glu-decarb-GAD gluta 56.8 11 0.00029 18.7 2.9 51 107-159 200-251 (493)
76 TIGR01421 gluta_reduc_1 glutat 56.7 14 0.00035 18.2 3.3 65 2-69 320-399 (475)
77 PRK13426 F0F1 ATP synthase sub 56.0 4 0.0001 21.7 0.5 14 127-140 93-106 (289)
78 pfam01935 DUF87 Domain of unkn 54.4 15 0.00037 18.0 3.2 15 49-63 41-56 (218)
79 PRK04128 1-(5-phosphoribosyl)- 54.2 19 0.00047 17.3 5.8 125 3-160 45-171 (228)
80 PRK05621 F0F1 ATP synthase sub 52.9 6.1 0.00015 20.5 1.0 14 127-140 93-106 (287)
81 PRK07695 transcriptional regul 52.5 7.9 0.0002 19.8 1.5 147 50-224 18-170 (202)
82 PRK13422 F0F1 ATP synthase sub 51.8 5.8 0.00015 20.6 0.8 19 163-181 159-177 (298)
83 TIGR03323 alt_F1F0_F1_gam alte 51.4 6.4 0.00016 20.3 0.9 13 128-140 90-102 (285)
84 PRK04169 geranylgeranylglycery 51.1 13 0.00033 18.4 2.5 70 52-138 24-99 (229)
85 PRK13131 consensus 51.0 21 0.00053 17.0 5.8 158 46-223 25-195 (257)
86 TIGR02183 GRXA Glutaredoxin, G 50.4 21 0.00053 17.0 3.4 41 116-160 4-44 (86)
87 COG1069 AraB Ribulose kinase [ 50.1 7.2 0.00018 20.0 1.0 51 148-210 251-302 (544)
88 cd00564 TMP_TenI Thiamine mono 50.1 22 0.00055 16.9 4.0 150 49-224 15-171 (196)
89 cd02812 PcrB_like PcrB_like pr 49.9 14 0.00035 18.2 2.4 70 53-139 19-95 (219)
90 TIGR01146 ATPsyn_F1gamma ATP s 49.5 4.8 0.00012 21.1 0.1 27 192-225 81-110 (330)
91 PRK13427 F0F1 ATP synthase sub 48.7 9.2 0.00023 19.3 1.4 14 128-141 95-108 (286)
92 PRK13425 F0F1 ATP synthase sub 48.6 6.6 0.00017 20.2 0.7 19 163-181 160-178 (291)
93 pfam00231 ATP-synt ATP synthas 48.6 7.3 0.00019 20.0 0.9 14 127-140 93-106 (288)
94 PRK13126 consensus 47.8 23 0.0006 16.7 5.6 72 128-206 78-161 (237)
95 KOG0685 consensus 47.4 11 0.00029 18.7 1.7 67 2-74 23-91 (498)
96 pfam10150 RNase_E_G Ribonuclea 47.1 22 0.00056 16.9 3.1 149 14-167 55-240 (271)
97 cd04962 GT1_like_5 This family 47.0 24 0.00061 16.6 5.2 19 19-37 73-91 (371)
98 pfam02702 KdpD Osmosensitive K 46.6 18 0.00047 17.4 2.6 28 53-80 27-54 (211)
99 TIGR02624 rhamnu_1P_ald rhamnu 46.5 22 0.00056 16.9 3.0 43 50-92 15-59 (273)
100 PRK13424 F0F1 ATP synthase sub 46.4 7.8 0.0002 19.8 0.7 13 164-176 158-170 (291)
101 cd04723 HisA_HisF Phosphoribos 46.3 25 0.00063 16.5 5.2 71 3-81 51-122 (233)
102 PRK08618 ornithine cyclodeamin 45.5 21 0.00054 17.0 2.8 11 104-114 91-101 (325)
103 PRK00346 surE stationary phase 44.8 26 0.00066 16.4 3.6 47 1-50 1-48 (246)
104 PRK09454 ugpQ cytoplasmic glyc 44.7 20 0.00052 17.1 2.7 94 48-154 24-117 (249)
105 COG1433 Uncharacterized conser 44.7 26 0.00066 16.4 4.9 37 22-66 57-93 (121)
106 COG0157 NadC Nicotinate-nucleo 44.6 22 0.00057 16.8 2.9 15 213-227 173-187 (280)
107 KOG0566 consensus 44.6 13 0.00034 18.3 1.7 43 13-56 293-335 (1080)
108 PRK05784 phosphoribosylamine-- 44.3 26 0.00067 16.4 5.2 80 20-102 59-162 (485)
109 COG1646 Predicted phosphate-bi 44.0 20 0.00051 17.2 2.5 76 21-100 7-89 (240)
110 PRK05742 nicotinate-nucleotide 43.8 24 0.00061 16.6 2.9 26 202-227 156-189 (277)
111 PRK06543 nicotinate-nucleotide 43.7 25 0.00063 16.5 2.9 14 214-227 179-192 (281)
112 PRK06079 enoyl-(acyl carrier p 43.4 22 0.00056 16.9 2.7 28 41-68 15-42 (252)
113 PRK13934 stationary phase surv 43.3 27 0.0007 16.3 3.8 174 1-198 1-209 (266)
114 cd02202 FtsZ_type2 FtsZ is a G 43.1 24 0.0006 16.7 2.8 38 1-40 1-41 (349)
115 pfam04309 G3P_antiterm Glycero 43.0 28 0.00071 16.2 5.1 26 42-67 144-169 (174)
116 PRK05848 nicotinate-nucleotide 42.8 26 0.00065 16.4 2.9 13 214-226 167-179 (272)
117 PRK13423 F0F1 ATP synthase sub 42.2 11 0.00028 18.9 0.9 15 127-141 93-107 (286)
118 PRK13585 1-(5-phosphoribosyl)- 41.9 29 0.00073 16.1 5.4 81 3-91 47-132 (240)
119 KOG2872 consensus 41.8 29 0.00074 16.1 4.3 66 15-92 237-302 (359)
120 PRK08385 nicotinate-nucleotide 41.5 28 0.0007 16.2 2.9 11 216-226 172-182 (279)
121 COG1060 ThiH Thiamine biosynth 41.2 29 0.00075 16.0 3.7 66 2-68 109-180 (370)
122 cd03794 GT1_wbuB_like This fam 41.0 30 0.00076 16.0 7.3 45 214-258 313-361 (394)
123 LOAD_HisDeac1 consensus 40.6 30 0.00077 16.0 5.2 65 126-203 139-206 (295)
124 PRK06559 nicotinate-nucleotide 40.5 29 0.00074 16.1 2.9 42 51-94 41-82 (290)
125 PRK06106 nicotinate-nucleotide 40.3 30 0.00076 16.0 2.9 13 214-226 178-190 (281)
126 PRK06978 nicotinate-nucleotide 40.1 30 0.00077 16.0 2.9 12 202-213 166-177 (288)
127 PRK08159 enoyl-(acyl carrier p 40.0 27 0.00068 16.3 2.7 52 41-92 18-70 (272)
128 pfam00850 Hist_deacetyl Histon 40.0 31 0.00078 15.9 5.1 84 127-225 131-223 (302)
129 PRK07533 enoyl-(acyl carrier p 39.9 31 0.00079 15.9 3.4 52 41-92 14-66 (254)
130 PRK07428 nicotinate-nucleotide 39.9 31 0.00078 15.9 3.0 14 214-227 179-192 (285)
131 COG1089 Gmd GDP-D-mannose dehy 39.7 18 0.00045 17.5 1.7 22 113-134 82-103 (345)
132 PRK11148 cyclic 3',5'-adenosin 39.7 31 0.00079 15.9 4.9 216 1-260 15-262 (275)
133 cd01572 QPRTase Quinolinate ph 39.5 31 0.0008 15.9 3.0 13 214-226 168-180 (268)
134 PRK07896 nicotinate-nucleotide 39.4 31 0.0008 15.9 2.9 14 214-227 185-198 (288)
135 pfam09347 DUF1989 Domain of un 39.4 31 0.0008 15.9 2.9 92 96-219 6-97 (167)
136 PRK07107 inositol-5-monophosph 38.9 32 0.00081 15.8 4.9 32 50-81 245-279 (497)
137 cd01143 YvrC Periplasmic bindi 38.8 32 0.00082 15.8 4.5 39 26-71 56-95 (195)
138 pfam02844 GARS_N Phosphoribosy 38.5 32 0.00083 15.8 4.1 15 26-40 57-71 (99)
139 PRK09016 quinolinate phosphori 38.4 32 0.00082 15.8 2.9 13 214-226 195-207 (296)
140 TIGR00580 mfd transcription-re 38.1 33 0.00084 15.7 5.4 95 109-224 562-660 (997)
141 PRK08255 salicylyl-CoA 5-hydro 37.7 33 0.00085 15.7 2.9 45 1-48 1-45 (770)
142 PRK00087 4-hydroxy-3-methylbut 37.7 24 0.00061 16.6 2.1 127 43-180 73-217 (670)
143 cd01568 QPRTase_NadC Quinolina 37.3 34 0.00086 15.7 3.3 13 214-226 167-179 (269)
144 TIGR01743 purR_Bsub pur operon 37.2 6.4 0.00016 20.3 -0.9 28 184-211 90-117 (269)
145 PRK13122 consensus 37.2 34 0.00087 15.6 5.4 88 128-222 85-182 (242)
146 cd03822 GT1_ecORF704_like This 37.1 34 0.00087 15.6 5.6 73 116-191 190-274 (366)
147 PRK13931 stationary phase surv 36.7 29 0.00074 16.1 2.4 206 1-227 1-243 (261)
148 TIGR03425 urea_degr_2 urea car 36.6 16 0.00042 17.7 1.1 94 93-217 5-98 (233)
149 pfam00478 IMPDH IMP dehydrogen 36.4 35 0.00089 15.6 5.3 33 49-81 225-260 (467)
150 cd06070 H2MP_like-2 Putative [ 36.3 35 0.00089 15.6 3.1 52 43-99 13-65 (140)
151 PRK09213 purine operon repress 36.3 11 0.00028 18.9 0.2 10 189-198 97-106 (274)
152 cd00851 MTH1175 This uncharact 35.9 35 0.00091 15.5 4.9 34 24-65 57-90 (103)
153 pfam10761 DUF2590 Protein of u 35.8 17 0.00043 17.6 1.1 17 184-201 65-81 (103)
154 PRK09140 2-dehydro-3-deoxy-6-p 35.6 36 0.00092 15.5 3.7 129 19-179 49-181 (206)
155 PRK13935 stationary phase surv 35.5 36 0.00092 15.5 3.1 202 1-226 1-231 (255)
156 PRK05458 guanosine 5'-monophos 35.2 36 0.00093 15.4 6.0 15 48-62 150-164 (326)
157 cd02930 DCR_FMN 2,4-dienoyl-Co 35.2 37 0.00093 15.4 6.4 52 14-66 186-244 (353)
158 cd04724 Tryptophan_synthase_al 34.9 37 0.00094 15.4 5.6 150 19-178 65-216 (242)
159 COG0224 AtpG F0F1-type ATP syn 34.8 13 0.00033 18.4 0.3 37 94-142 69-105 (287)
160 TIGR02253 CTE7 HAD superfamily 34.6 37 0.00095 15.4 3.4 57 18-83 118-180 (244)
161 PRK10490 sensor protein KdpD; 34.5 34 0.00086 15.7 2.5 51 29-79 101-157 (895)
162 TIGR01422 phosphonatase phosph 33.9 38 0.00097 15.3 2.8 38 26-63 136-173 (199)
163 PRK00043 thiE thiamine-phospha 33.6 39 0.00099 15.3 4.0 42 49-90 23-64 (210)
164 COG1409 Icc Predicted phosphoh 33.6 39 0.00099 15.3 5.4 171 1-185 1-195 (301)
165 TIGR01800 cit_synth_II 2-methy 33.4 14 0.00037 18.1 0.4 15 75-89 355-369 (386)
166 PRK12330 oxaloacetate decarbox 33.2 39 0.001 15.2 5.3 65 3-69 171-235 (499)
167 PRK08594 enoyl-(acyl carrier p 33.2 33 0.00084 15.7 2.2 53 41-93 14-69 (256)
168 CHL00076 chlB photochlorophyll 33.2 39 0.001 15.2 3.9 69 5-76 60-133 (510)
169 PRK08072 nicotinate-nucleotide 33.2 39 0.001 15.2 2.9 12 214-225 174-185 (277)
170 PRK00216 ubiE ubiquinone/menaq 32.9 17 0.00043 17.6 0.7 21 60-80 28-48 (239)
171 pfam08267 Meth_synt_1 Cobalami 32.6 25 0.00064 16.5 1.6 32 41-72 34-66 (310)
172 KOG3669 consensus 32.5 40 0.001 15.2 3.5 141 54-220 477-629 (705)
173 pfam01729 QRPTase_C Quinolinat 32.0 41 0.001 15.1 5.9 56 18-81 66-123 (169)
174 TIGR02683 upstrm_HI1419 probab 32.0 38 0.00097 15.3 2.4 22 96-118 54-75 (95)
175 cd03786 GT1_UDP-GlcNAc_2-Epime 31.9 41 0.001 15.1 2.9 48 23-73 81-128 (363)
176 PRK02910 light-independent pro 31.8 38 0.00098 15.3 2.4 59 7-76 62-131 (524)
177 cd01573 modD_like ModD; Quinol 31.4 42 0.0011 15.1 2.9 16 212-227 168-183 (272)
178 PRK07455 keto-hydroxyglutarate 31.4 42 0.0011 15.0 2.7 126 20-179 53-183 (210)
179 COG2205 KdpD Osmosensitive K+ 31.3 35 0.0009 15.5 2.1 136 30-177 100-284 (890)
180 PRK13125 trpA tryptophan synth 31.2 42 0.0011 15.0 5.9 161 9-223 12-184 (247)
181 pfam02593 DUF166 Uncharacteriz 30.8 43 0.0011 15.0 4.7 99 111-224 24-126 (215)
182 KOG0884 consensus 30.4 44 0.0011 14.9 5.6 74 65-145 62-139 (161)
183 TIGR01704 MTA/SAH-Nsdase MTA/S 30.2 33 0.00085 15.7 1.9 50 23-82 59-108 (229)
184 PRK13587 1-(5-phosphoribosyl)- 29.9 44 0.0011 14.9 3.0 70 4-81 49-120 (234)
185 PRK06505 enoyl-(acyl carrier p 29.5 38 0.00096 15.3 2.0 53 41-93 15-68 (271)
186 PRK08415 enoyl-(acyl carrier p 29.0 46 0.0012 14.8 3.5 53 41-93 13-66 (274)
187 PRK13136 consensus 28.7 47 0.0012 14.8 6.3 94 120-221 92-193 (253)
188 cd02933 OYE_like_FMN Old yello 28.7 47 0.0012 14.7 4.8 15 127-141 199-213 (338)
189 PRK13124 consensus 28.4 47 0.0012 14.7 5.3 158 45-222 22-191 (257)
190 cd01494 AAT_I Aspartate aminot 28.3 33 0.00083 15.7 1.5 47 16-67 3-49 (170)
191 COG2720 Uncharacterized vancom 27.9 48 0.0012 14.7 2.7 45 26-70 214-262 (376)
192 pfam10686 DUF2493 Protein of u 27.6 49 0.0012 14.6 5.5 60 1-65 4-63 (71)
193 PRK13530 arsenate reductase; P 27.6 49 0.0012 14.6 6.5 62 2-72 5-66 (133)
194 KOG2738 consensus 27.3 49 0.0012 14.6 2.3 25 250-274 306-331 (369)
195 PRK00005 fmt methionyl-tRNA fo 27.2 49 0.0013 14.6 6.8 89 1-96 1-92 (309)
196 cd02932 OYE_YqiM_FMN Old yello 27.2 49 0.0013 14.6 4.3 43 26-68 42-99 (336)
197 cd01480 vWA_collagen_alpha_1-V 26.8 50 0.0013 14.5 3.7 27 3-29 5-34 (186)
198 PRK07370 enoyl-(acyl carrier p 26.7 37 0.00094 15.4 1.6 25 41-65 15-39 (259)
199 PRK00103 SPOUT methyltransfera 26.6 51 0.0013 14.5 4.6 80 1-81 3-91 (156)
200 PRK08575 5-methyltetrahydropte 26.4 32 0.00082 15.8 1.2 29 43-71 37-65 (320)
201 PRK06523 short chain dehydroge 25.9 39 0.001 15.2 1.6 26 43-68 17-42 (260)
202 PRK12305 thrS threonyl-tRNA sy 25.9 36 0.00092 15.5 1.4 48 214-262 379-428 (576)
203 pfam01209 Ubie_methyltran ubiE 25.8 43 0.0011 15.0 1.8 19 61-79 25-43 (233)
204 cd06323 PBP1_ribose_binding Pe 25.6 53 0.0013 14.4 5.5 45 18-65 17-61 (268)
205 TIGR00643 recG ATP-dependent D 25.6 47 0.0012 14.7 2.0 79 93-183 334-422 (721)
206 cd02809 alpha_hydroxyacid_oxid 25.5 53 0.0014 14.4 5.4 20 71-90 31-50 (299)
207 cd01542 PBP1_TreR_like Ligand- 25.4 53 0.0014 14.4 5.5 83 130-222 134-217 (259)
208 COG0622 Predicted phosphoester 25.2 54 0.0014 14.4 4.4 139 1-208 2-143 (172)
209 pfam07355 GRDB Glycine/sarcosi 25.2 54 0.0014 14.3 5.6 64 4-67 54-119 (349)
210 PRK00910 ribB 3,4-dihydroxy-2- 24.9 54 0.0014 14.3 2.6 49 126-176 10-71 (218)
211 cd03036 ArsC_like Arsenate Red 24.8 55 0.0014 14.3 4.8 77 9-90 3-96 (111)
212 PRK12928 lipoyl synthase; Prov 24.7 55 0.0014 14.3 2.5 37 21-57 94-134 (290)
213 PRK07534 methionine synthase I 24.6 34 0.00087 15.6 1.1 22 47-68 46-67 (335)
214 cd04735 OYE_like_4_FMN Old yel 24.3 56 0.0014 14.2 5.6 12 53-64 242-253 (353)
215 PRK13114 consensus 24.2 56 0.0014 14.2 5.2 22 46-67 27-48 (266)
216 TIGR02928 TIGR02928 orc1/cdc6 24.1 56 0.0014 14.2 2.2 58 9-66 48-116 (383)
217 pfam02635 DrsE DsrE/DsrF-like 24.0 56 0.0014 14.2 3.2 75 2-88 37-119 (119)
218 cd03814 GT1_like_2 This family 23.9 57 0.0014 14.2 4.8 42 19-65 72-113 (364)
219 pfam00737 PsbH Photosystem II 23.9 26 0.00067 16.4 0.4 17 84-100 6-24 (52)
220 PRK12413 phosphomethylpyrimidi 23.9 54 0.0014 14.4 2.0 15 53-67 64-78 (253)
221 cd06906 M14_Nna1 Peptidase M14 23.6 57 0.0015 14.2 2.7 50 114-164 113-168 (278)
222 COG0415 PhrB Deoxyribodipyrimi 23.5 58 0.0015 14.1 2.7 46 19-64 79-124 (461)
223 TIGR02814 pfaD_fam PfaD family 23.5 58 0.0015 14.1 2.9 77 58-139 75-166 (449)
224 cd00381 IMPDH IMPDH: The catal 23.5 58 0.0015 14.1 5.9 15 50-64 97-111 (325)
225 pfam02590 SPOUT_MTase Predicte 23.3 58 0.0015 14.1 4.5 47 2-48 4-50 (155)
226 TIGR02884 spore_pdaA delta-lac 23.3 19 0.00049 17.3 -0.4 76 65-158 92-198 (225)
227 KOG1207 consensus 23.1 59 0.0015 14.1 3.5 196 32-253 6-231 (245)
228 TIGR02109 PQQ_syn_pqqE coenzym 23.1 46 0.0012 14.8 1.5 112 41-156 87-235 (363)
229 PRK03353 ribB 3,4-dihydroxy-2- 23.1 59 0.0015 14.1 4.2 50 125-176 8-70 (217)
230 CHL00066 psbH photosystem II p 23.0 28 0.00072 16.2 0.4 18 84-101 21-40 (73)
231 PRK02624 psbH photosystem II r 23.0 26 0.00066 16.4 0.2 38 84-140 9-48 (64)
232 TIGR00433 bioB biotin synthase 22.8 57 0.0015 14.2 1.9 35 21-62 143-179 (350)
233 pfam01293 PEPCK_ATP Phosphoeno 22.7 60 0.0015 14.0 3.7 75 128-220 183-271 (451)
234 cd06290 PBP1_LacI_like_9 Ligan 22.4 61 0.0015 14.0 7.6 51 13-66 12-62 (265)
235 cd01149 HutB Hemin binding pro 22.4 61 0.0016 14.0 3.6 39 26-70 54-93 (235)
236 PRK09206 pyruvate kinase; Prov 22.2 61 0.0016 14.0 3.8 29 47-75 15-47 (470)
237 PRK05481 lipoyl synthase; Prov 22.1 61 0.0016 14.0 2.5 11 26-36 91-101 (289)
238 PRK06096 molybdenum transport 22.1 62 0.0016 14.0 3.0 13 215-227 177-189 (284)
239 cd02940 DHPD_FMN Dihydropyrimi 22.0 62 0.0016 14.0 4.3 31 40-70 17-47 (299)
240 KOG0910 consensus 22.0 40 0.001 15.2 1.0 86 130-224 50-146 (150)
241 cd06291 PBP1_Qymf_like Ligand 22.0 62 0.0016 14.0 4.9 183 13-217 12-213 (265)
242 COG0352 ThiE Thiamine monophos 21.9 53 0.0014 14.4 1.6 19 49-67 24-42 (211)
243 KOG2550 consensus 21.7 63 0.0016 13.9 4.4 37 44-81 248-288 (503)
244 PRK13625 bis(5'-nucleosyl)-tet 21.5 62 0.0016 13.9 1.9 64 1-68 1-76 (245)
245 CHL00194 ycf39 Ycf39; Provisio 21.5 63 0.0016 13.9 3.5 133 1-153 1-144 (319)
246 COG0394 Wzb Protein-tyrosine-p 21.4 63 0.0016 13.9 6.0 79 1-87 3-82 (139)
247 PRK06603 enoyl-(acyl carrier p 21.4 61 0.0016 14.0 1.9 52 41-92 16-68 (260)
248 TIGR01873 cas_CT1978 CRISPR-as 21.3 64 0.0016 13.9 2.5 42 5-48 29-74 (91)
249 cd02950 TxlA TRX-like protein 21.2 64 0.0016 13.9 3.5 21 205-225 89-109 (142)
250 PRK07831 short chain dehydroge 21.1 64 0.0016 13.8 2.1 180 43-247 25-257 (261)
251 PRK12743 acetoin dehydrogenase 21.1 46 0.0012 14.8 1.2 95 43-138 10-109 (253)
252 CHL00033 ycf3 photosystem I as 21.1 43 0.0011 15.0 1.0 39 126-178 7-46 (165)
253 PRK07984 enoyl-(acyl carrier p 21.0 65 0.0017 13.8 2.6 53 41-93 14-67 (262)
254 KOG1151 consensus 20.9 24 0.00061 16.6 -0.3 51 189-239 602-661 (775)
255 PRK09620 hypothetical protein; 20.6 66 0.0017 13.8 3.2 84 131-224 130-218 (229)
256 pfam03314 DUF273 Protein of un 20.6 20 0.0005 17.2 -0.8 34 173-208 161-194 (222)
257 COG0502 BioB Biotin synthase a 20.6 66 0.0017 13.8 2.3 43 16-65 118-160 (335)
258 TIGR00504 pyro_pdase pyrrolido 20.5 66 0.0017 13.8 2.6 50 8-59 39-89 (220)
259 PRK10605 N-ethylmaleimide redu 20.5 66 0.0017 13.8 5.2 46 24-69 42-102 (362)
260 PRK12939 short chain dehydroge 20.3 65 0.0017 13.8 1.8 107 43-149 15-139 (250)
261 cd06286 PBP1_CcpB_like Ligand- 20.3 67 0.0017 13.7 7.3 190 11-216 10-214 (260)
262 TIGR00250 TIGR00250 conserved 20.2 67 0.0017 13.7 2.3 37 131-171 41-84 (133)
263 PRK13132 consensus 20.2 67 0.0017 13.7 5.5 136 46-221 25-190 (246)
264 cd06282 PBP1_GntR_like_2 Ligan 20.2 67 0.0017 13.7 6.6 184 12-215 11-214 (266)
265 PRK05717 oxidoreductase; Valid 20.1 68 0.0017 13.7 2.4 49 43-92 18-66 (255)
266 PRK03379 vitamin B12-transport 20.1 68 0.0017 13.7 4.3 40 26-71 73-112 (265)
No 1
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=100.00 E-value=0 Score=809.36 Aligned_cols=266 Identities=58% Similarity=0.977 Sum_probs=260.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
||+||||||||+|||++|+++||.||++|++|||||||||||+|||||+|+|++|+++|+||||+|||+|||||+++|++
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~ 80 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFID 80 (266)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHH
T ss_conf 94899822247312899998707778750673899857304577677799999999858878962663334457787763
Q ss_pred HCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf 18938975007988875407999848992899999600005883325989999999863413689988999625762289
Q gi|254780659|r 81 RHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE 160 (274)
Q Consensus 81 ~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE 160 (274)
++++||||+|||.++||+||++|. .||+|++|+|||||+||.+.+||||+++|++++++++ .+++||||||||||||
T Consensus 81 ~~~~ilRP~N~p~~~~G~G~~~f~-~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~--~~~~iiVDFHAEtTSE 157 (266)
T COG1692 81 NADRILRPANYPDGTPGKGSRIFK-INGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKL--GTDLIIVDFHAETTSE 157 (266)
T ss_pred CCCCEECCCCCCCCCCCCEEEEEE-ECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEEECCCCCHHH
T ss_conf 344254357788899863479999-6892899998431335860017978999999974746--8964999812652155
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 99999760895779980697624654564036728984056013712103547467898885168865411157871999
Q gi|254780659|r 161 KQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240 (274)
Q Consensus 161 K~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~ 240 (274)
|+|||||||||||||+||||||||||+||||+|||||||+||||||||||||+||++|+||++++| .||++++|+++||
T Consensus 158 K~a~g~yldGrvsavvGTHTHV~TaD~rIL~~GTayiTDvGMtG~~dSviG~~~e~~i~rFl~~~p-~rfeva~g~~~l~ 236 (266)
T COG1692 158 KNAFGWYLDGRVSAVVGTHTHVPTADERILPKGTAYITDVGMTGPYDSVIGMNPEEPIKRFLTGLP-QRFEVASGPAQLN 236 (266)
T ss_pred HHHHHEEECCEEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCEEE
T ss_conf 520106886728899854676556411405798489866744456642026783689999974798-6467558983788
Q ss_pred EEEEEEECCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 999998479986746789987683165787
Q gi|254780659|r 241 GICAEISDVTGLAEKIAPIRIGPRLSETRP 270 (274)
Q Consensus 241 gv~ieid~~tG~a~~I~ri~igg~L~e~~p 270 (274)
||+||+|++||+|.+|||||+++.++++.|
T Consensus 237 GV~ieid~~Tg~a~kie~Iri~~~~~~~~~ 266 (266)
T COG1692 237 GVLIEIDDRTGKAVKIERIRIGEDLEFTLP 266 (266)
T ss_pred EEEEEECCCCCCEEEEEEEEECCCCCCCCC
T ss_conf 999996178896388887785377623379
No 2
>TIGR00282 TIGR00282 conserved hypothetical protein TIGR00282; InterPro: IPR005235 This family of conserved hypothetical proteins has no known function..
Probab=100.00 E-value=0 Score=444.41 Aligned_cols=257 Identities=43% Similarity=0.721 Sum_probs=248.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
+++||+||++|++||+.+..++|.++.+|++|++|+|+||+++|+|+++++++.|+..|+|++|+|||+|+++++.+++.
T Consensus 1 ~~~~~~gd~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~l~~~g~~~~~~g~~~w~~~~~~~~~~ 80 (272)
T TIGR00282 1 IKVLFLGDVYGKAGRKIVKENLPKLKNKYKPDLVIANGENTTNGKGLTPKHYNNLKQSGVDYITLGNHTWFKKEDLDLLD 80 (272)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 90688621116520256776665542100220588716644456655478888887606543440652011345556541
Q ss_pred HCCCEEEECCCCCCCC----CCCEEEEECCCCCEEEEEEEEHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 1893897500798887----5407999848992899999600005883-3259899999998634136899889996257
Q gi|254780659|r 81 RHCKFLRPANYPPNTP----GNGSGLYCAKNGSNVLVANIMGRVFMNP-LLDDPFRTADKILATCPLKEQADVIVFDFHA 155 (274)
Q Consensus 81 ~~~~ilRP~N~p~~~P----G~G~~i~~~~~g~ki~Vinl~Gr~fM~~-~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa 155 (274)
+.+.++||+|++...| |+|+..+.. ++.+++++|++|+.+.-| .+++||...+++.... .++++.+++||||
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~--~~~~~~~~~d~~~ 157 (272)
T TIGR00282 81 NQPDLLRPLNFPDGFPFFNLGKGSCFLKL-NGEKLAVTNLLGTSLNLPFALTNPFLKLKELVPEL--SKDCDLHFVDFHA 157 (272)
T ss_pred CCHHHHCCCCCCCCCCHHHCCCCEEEEEE-CCCEEEEEEECCCEECCCCCCCCHHHHHHHHHHHH--HHCCCEEEEEECC
T ss_conf 20012024554111321122562179975-47435765411420036520024145677766655--3036536885022
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC-HHHCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 62289999997608957799806976246545640367289840560137-12103547467898885168865411157
Q gi|254780659|r 156 ETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIAN 234 (274)
Q Consensus 156 EaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~-~~SVIG~~~~~~i~rf~t~~p~~r~~~a~ 234 (274)
|+|+||.+++|++||++++++||||||||+|.||+|+||+|+||+||||| ++|++|++++..+++|.++.|. +|++++
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~d~~~~~~g~~~~~d~g~~g~g~~~~~g~~~~~~~~~~~~~~~~-~~~~~~ 236 (272)
T TIGR00282 158 ETTSEKNAFGWFFDGYVTAVVGTHTHVPTADLRILPKGTAYITDVGMTGPGFGSVLGANPETSLKLFCTGLPL-RFEVSE 236 (272)
T ss_pred CCCCCHHHHEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf 2231001110001450123320211122322201435623554223457764431146725666666504530-255513
Q ss_pred CCEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf 871999999998479986746789987
Q gi|254780659|r 235 GPATLCGICAEISDVTGLAEKIAPIRI 261 (274)
Q Consensus 235 g~~~l~gv~ieid~~tG~a~~I~ri~i 261 (274)
+..+++|++++++.+++++.+++++++
T Consensus 237 ~~~~l~g~~~~~~~~~~~~~~~~~~~~ 263 (272)
T TIGR00282 237 CGTTLNGVFFEVDLKTKKALKIERIRI 263 (272)
T ss_pred CCCEEEEEEEEEECCCCCEEHHHHHHH
T ss_conf 660330158985045552000222222
No 3
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=99.11 E-value=1.6e-08 Score=76.03 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=123.6
Q ss_pred EEEEEEECCCH--------HHHHHHHHHHHHHHHHC---CCCEEEECCEECCCCCCCC-----HHHHHHHHHCCCCEEEE
Q ss_conf 26999720276--------88999999808988860---9989999170047886789-----99999998379989993
Q gi|254780659|r 2 RLLFLGDIVGK--------TGRSIVYEMLPRLIRDF---QLDFVIANGENSAGGFGIT-----EKIFCEMMETGIDVITT 65 (274)
Q Consensus 2 kiLfiGDIvG~--------~Gr~~v~~~Lp~l~~~~---~~DfvIaNgENaa~G~Git-----~~~~~~l~~~GvDviT~ 65 (274)
+||-+-|+-|+ .|.-.+...+.++|+++ +++.+.+++--.-.|-=.+ .-.++-|-.+|.|+.|.
T Consensus 36 tilhtnD~Hg~~~~~~~~~~G~a~~at~i~~~R~e~~a~~~n~llldaGD~~qGt~~s~l~~g~p~i~~mN~lgyDa~tl 115 (551)
T PRK09558 36 TVLHTNDHHGHFWRNEYGEYGLAARKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAV 115 (551)
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHCCCCHHHHHHHCCCCCEEEE
T ss_conf 99984555567767667885799999999999999852599879995885556774604228807999986189888977
Q ss_pred CHHHHCCC--CHHHHHHHCCCEEEECCCCC---CCCC-CCEEEEECCCCCEEEEEEEEHHHCC---CC------CCCCHH
Q ss_conf 42653022--20475421893897500798---8875-4079998489928999996000058---83------325989
Q gi|254780659|r 66 GNHVWDKR--EALVFSQRHCKFLRPANYPP---NTPG-NGSGLYCAKNGSNVLVANIMGRVFM---NP------LLDDPF 130 (274)
Q Consensus 66 GNH~wd~k--ei~~~i~~~~~ilRP~N~p~---~~PG-~G~~i~~~~~g~ki~Vinl~Gr~fM---~~------~~d~PF 130 (274)
|||=||.- .+..+++..+.=+=-+|.-. +.|- +-|.|++ .+|.||+||-+.-.--. +| .+.+|.
T Consensus 116 GNHEFD~G~~~l~~~~~~a~fP~LsANi~~~~~g~~~~~py~I~e-~~G~kVGiIGl~t~~t~~~~~p~~~~~~~f~d~v 194 (551)
T PRK09558 116 GNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYKIFD-VQGLKIAVIGLTTEDTAKIGNPEYITDLEFRDPA 194 (551)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEE-ECCEEEEEEECCCCCCCCCCCCCCCCCCEECCHH
T ss_conf 754455787899999852799779866567788981557769999-7996999997156563012584555895572899
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCC---------CCHHHHHHHHHHHCC-CEEEEEECCCCC
Q ss_conf 9999998634136899889996257---------622899999976089-577998069762
Q gi|254780659|r 131 RTADKILATCPLKEQADVIVFDFHA---------ETTSEKQCFAHFVDS-RASLVVGTHTHI 182 (274)
Q Consensus 131 ~~~d~~l~~~~~~~~~~~i~VDfHa---------EaTSEK~A~g~~lDG-rVsaVvGTHTHV 182 (274)
+++.+.+++++..+.+|+|++=.|. +..++..+++..++. .|.+|+|=|||-
T Consensus 195 e~~~~~v~~Lr~~~g~DiII~L~H~G~~~d~~~~~~~~~d~~lA~~~~~~gIDvIigGHsH~ 256 (551)
T PRK09558 195 EEAKKVIPELKQTEKPDIIIALTHMGHYADGEHGSNAPGDVTMARALPAGSLDMIIGGHSQD 256 (551)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 99999999998538999899995566446655455673169999747756850998078775
No 4
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=99.09 E-value=1.7e-08 Score=76.00 Aligned_cols=181 Identities=21% Similarity=0.219 Sum_probs=110.0
Q ss_pred EEEEEEECCCHHHHHHH--------HHHHHHHHHHC-CCCEEEECCEECCCCC----------CCCHHHHHHHHHCCCCE
Q ss_conf 26999720276889999--------99808988860-9989999170047886----------78999999998379989
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIV--------YEMLPRLIRDF-QLDFVIANGENSAGGF----------GITEKIFCEMMETGIDV 62 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v--------~~~Lp~l~~~~-~~DfvIaNgENaa~G~----------Git~~~~~~l~~~GvDv 62 (274)
+|.|.|||+ .||..- ...+..++.-. +.|++|+|-|..-.+. --.++.++.|.++|+|+
T Consensus 1 tl~f~GDi~--l~~~~~~~~~~~d~~~~~~~v~~~l~~aD~~i~NlE~~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~ 78 (237)
T pfam09587 1 TLAFVGDVM--LGRGLDQIAPPYDFDYPFADVKPLLRAADLAIGNLETPITDSGEPYSGKPAFRAPPENAEALKAAGFDV 78 (237)
T ss_pred CEEEEEEEC--CCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCE
T ss_conf 969986461--688456651048807889999999861998699811365488987899815779999999999849999
Q ss_pred EEECH-HHHCCCC-----HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC--------CCCC
Q ss_conf 99342-6530222-----04754218938975007988875407999848992899999600005883--------3259
Q gi|254780659|r 63 ITTGN-HVWDKRE-----ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNP--------LLDD 128 (274)
Q Consensus 63 iT~GN-H~wd~ke-----i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~--------~~d~ 128 (274)
+++.| |++|+-+ .++.+++.. |.--==......-+-..+++ .+|.||+++...-...=.. ...+
T Consensus 79 vslANNH~~D~G~~G~~~T~~~L~~~g-i~~~G~g~~~~~a~~p~~~~-~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~ 156 (237)
T pfam09587 79 VSLANNHSLDYGEEGLLDTLDALDRAG-IAHAGAGRNLEEARRPAILE-VNGIRIAFLAYTYGTNGWGAGPYRPGVNPLD 156 (237)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCHHHCCCCEEEE-ECCCEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 995776433257799999999999879-96058889946627808999-7993899999875878756788887557569
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC------CCHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHH
Q ss_conf 899999998634136899889996257------6228999999760-895779980697624654564
Q gi|254780659|r 129 PFRTADKILATCPLKEQADVIVFDFHA------ETTSEKQCFAHFV-DSRASLVVGTHTHIPTADAQI 189 (274)
Q Consensus 129 PF~~~d~~l~~~~~~~~~~~i~VDfHa------EaTSEK~A~g~~l-DGrVsaVvGTHTHV~TaD~rI 189 (274)
+ ..+.+.+++. ++++|+++|=+|. +-+++...+++.| |--|.+|+|+|.||.-.=|++
T Consensus 157 ~-~~i~~~i~~~--k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lidaGaDlIiGhHpHv~q~iE~y 221 (237)
T pfam09587 157 E-EKIKADIRRA--KKKADIVIVSLHWGVEYQYEPTPEQRELAHALIDAGADLVIGHHPHVLQPIEVY 221 (237)
T ss_pred H-HHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf 9-9999999987--507999999877566787699999999999999779999991899878874999
No 5
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=99.09 E-value=1.9e-08 Score=75.64 Aligned_cols=174 Identities=22% Similarity=0.277 Sum_probs=107.8
Q ss_pred EEEEEEECCCHH-----HHHHHHHHHHHHHHHCCCCEEEECCEECCCCC------------CCCHHHHHHHHHCCCCEEE
Q ss_conf 269997202768-----89999998089888609989999170047886------------7899999999837998999
Q gi|254780659|r 2 RLLFLGDIVGKT-----GRSIVYEMLPRLIRDFQLDFVIANGENSAGGF------------GITEKIFCEMMETGIDVIT 64 (274)
Q Consensus 2 kiLfiGDIvG~~-----Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~------------Git~~~~~~l~~~GvDviT 64 (274)
++.|.|||+-.. +-..+-+.+..+-+ +.|++|+|=|..-... --.++.++.|.++|+|+++
T Consensus 1 tl~f~GDi~~~~~~~~~~~~~~~~~v~~~~~--~aD~~~~NlE~~i~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~~s 78 (239)
T smart00854 1 TLSFVGDVMLGRGVYKADFSPPFAGVKPLLR--AADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVS 78 (239)
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCEEE
T ss_conf 9699977614897455783578999999997--49999996402662899878777661202999999999982999899
Q ss_pred ECH-HHHCCC-----CHHHHHHHCCCEEEECCCCCCCCCC--------CEEEEECCCCCEEEEEEEEHHHCC--CCCCC-
Q ss_conf 342-653022-----2047542189389750079888754--------079998489928999996000058--83325-
Q gi|254780659|r 65 TGN-HVWDKR-----EALVFSQRHCKFLRPANYPPNTPGN--------GSGLYCAKNGSNVLVANIMGRVFM--NPLLD- 127 (274)
Q Consensus 65 ~GN-H~wd~k-----ei~~~i~~~~~ilRP~N~p~~~PG~--------G~~i~~~~~g~ki~Vinl~Gr~fM--~~~~d- 127 (274)
+.| |++|+- +.++.+++. +.. ..|. -..+++ .+|.||++++..-...- ...-+
T Consensus 79 lANNH~~D~G~~Gl~~Ti~~L~~~-------gi~--~~G~g~~~~~a~~p~~~~-~~g~~va~l~~t~~~~~~~~~~~~~ 148 (239)
T smart00854 79 LANNHSLDYGEEGLLDTLAALDAA-------GIA--HVGAGRNLAEARKPAIVE-VKGIKIALLAYTYGTNNGWAASKDR 148 (239)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHC-------CCC--CCCCCCCHHHCCCCEEEE-ECCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 317634312089999999999986-------996--158989957737828999-8998999999870778864377899
Q ss_pred ------CHH--HHHHHHHHHCCCCCCCCEEEEECCC------CCHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHH
Q ss_conf ------989--9999998634136899889996257------6228999999760-895779980697624654564
Q gi|254780659|r 128 ------DPF--RTADKILATCPLKEQADVIVFDFHA------ETTSEKQCFAHFV-DSRASLVVGTHTHIPTADAQI 189 (274)
Q Consensus 128 ------~PF--~~~d~~l~~~~~~~~~~~i~VDfHa------EaTSEK~A~g~~l-DGrVsaVvGTHTHV~TaD~rI 189 (274)
+++ ..+.+.+++ +++++|+++|=+|. +-+++-+.+++.| |--|.+|+|+|.||+-.=|.+
T Consensus 149 ~~~~~~~~~~~~~i~~~i~~--~k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lid~GaD~IiGhHpHv~q~~E~y 223 (239)
T smart00854 149 PGVALLPDLDREKILADIAR--ARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQPIEIY 223 (239)
T ss_pred CCCCCCCCCCHHHHHHHHHH--HHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf 87121570179999999998--8527999999930157787799999999999999769999992899878874999
No 6
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.70 E-value=2.6e-06 Score=61.72 Aligned_cols=194 Identities=20% Similarity=0.226 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCC-CC----CCCHHHHHHHHHCCCCEEEECHHHHCCCC--HHHHHHHCCCE
Q ss_conf 8899999980898886099899991700478-86----78999999998379989993426530222--04754218938
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAG-GF----GITEKIFCEMMETGIDVITTGNHVWDKRE--ALVFSQRHCKF 85 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~-G~----Git~~~~~~l~~~GvDviT~GNH~wd~ke--i~~~i~~~~~i 85 (274)
-|.-.+...+.++|++.+-.+++=+|..-.+ .. +-.....+-|-.+|-|+.|.|||=||.-. +..+++....-
T Consensus 52 ~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~yDa~tiGNHEFd~g~~~l~~~~~~~~fp 131 (517)
T COG0737 52 GGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGYDAMTLGNHEFDYGLEALARLLDEAKFP 131 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 77899999999998647984999278757884501136678758999864698789513533345789999987405787
Q ss_pred EEECCCCCC----CCC-CCEEEEECCCCCEEEEEEEEHHHCC---C------CCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 975007988----875-4079998489928999996000058---8------3325989999999863413689988999
Q gi|254780659|r 86 LRPANYPPN----TPG-NGSGLYCAKNGSNVLVANIMGRVFM---N------PLLDDPFRTADKILATCPLKEQADVIVF 151 (274)
Q Consensus 86 lRP~N~p~~----~PG-~G~~i~~~~~g~ki~Vinl~Gr~fM---~------~~~d~PF~~~d~~l~~~~~~~~~~~i~V 151 (274)
+=-+|+-.. .|. +-|.|++. +|.||+++=+-...-+ . -.+.+|..++++.+++++.+ ++|.|++
T Consensus 132 ~l~aNv~~~~~~~~~~~~Py~I~~~-~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~-~vD~iI~ 209 (517)
T COG0737 132 VLSANVYDKNSTGPPFFKPYAIKEV-GGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGE-GVDVIIA 209 (517)
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 7986786358777677787699961-9879999985145432344656557816667999999999998735-7989999
Q ss_pred ECCCCCHHHHHHHHHHHCCC-------EEEEEECCCCC--CCCHHHHCCCCEEEEECCCCCCCHHHCC
Q ss_conf 62576228999999760895-------77998069762--4654564036728984056013712103
Q gi|254780659|r 152 DFHAETTSEKQCFAHFVDSR-------ASLVVGTHTHI--PTADAQILDGGTGYITDLGMCGDYNSSI 210 (274)
Q Consensus 152 DfHaEaTSEK~A~g~~lDGr-------VsaVvGTHTHV--~TaD~rILp~GTayiTDvGMtG~~~SVI 210 (274)
=-|.-...+.+ .+.-..+- +.++++-|+|. +..+.....+||. +.-.|.-|-+=+++
T Consensus 210 LsH~G~~~d~~-~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~-ivqag~~gk~vG~~ 275 (517)
T COG0737 210 LSHLGIEDDLE-LASEVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTP-IVQAGEYGKYVGVL 275 (517)
T ss_pred CCCCCCCCHHH-HHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEE-EEECCCCCCEEEEE
T ss_conf 12678663345-54226652023556675588357774446775457658889-99668777579999
No 7
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.66 E-value=5.3e-06 Score=59.78 Aligned_cols=186 Identities=18% Similarity=0.188 Sum_probs=123.3
Q ss_pred CEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-----CHHHHHHHHHCCCCEEEECHHHHCCC-
Q ss_conf 926999720276-88999999808988860998999917004788678-----99999999837998999342653022-
Q gi|254780659|r 1 MRLLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-----TEKIFCEMMETGIDVITTGNHVWDKR- 73 (274)
Q Consensus 1 MkiLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-----t~~~~~~l~~~GvDviT~GNH~wd~k- 73 (274)
++||-.-|+-|+ .|---....+.++|.+.. ..++..+--+-+|-=+ ....++-+=.+|.|+.|.|||=||.-
T Consensus 666 l~v~htND~H~~l~~~ak~~~~IKe~Raenp-NtLlLdAGD~fqGtl~snl~kGea~~e~MN~mGyDAmtvGNHEFD~G~ 744 (1260)
T PRK09419 666 LTVMHTNDTHAHLDGAARRVGKIKEVREENP-NTILLDAGDVFSGDLYFTKWKGLADLKMMNMMGYDAMTFGNHEFDKGP 744 (1260)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCEEEEHHHCCHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 7888604542434427889999999874399-759996775677604011208989999987339778811555666777
Q ss_pred -CHHHHHH---------------HCCCEEEECCCC-CC--CC---------------C----CCEEEEECCCCCEEEEEE
Q ss_conf -2047542---------------189389750079-88--87---------------5----407999848992899999
Q gi|254780659|r 74 -EALVFSQ---------------RHCKFLRPANYP-PN--TP---------------G----NGSGLYCAKNGSNVLVAN 115 (274)
Q Consensus 74 -ei~~~i~---------------~~~~ilRP~N~p-~~--~P---------------G----~G~~i~~~~~g~ki~Vin 115 (274)
++..|+. ..++=+--+|.- .. .| . .-|.|++ ++|.||+|+-
T Consensus 745 ~~L~~f~~g~~~~~d~~~~~~~~~a~FPvLsANv~~~~t~~l~~~~k~~~~~~a~~~~~~~i~PY~I~E-v~G~KIGIIG 823 (1260)
T PRK09419 745 DVLPDFLKGGYSAVDPLNRHQFEKPEFPFVSSNVDVSKEGKLVSWAKKPATFTAGKKKEAGIYPYILLD-VNGEKVGVFG 823 (1260)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEE-ECCEEEEEEE
T ss_conf 899998734665554322222223689889888653688751000014443333333445669838999-8999999998
Q ss_pred EEHHHC--C-CC----CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHH
Q ss_conf 600005--8-83----3259899999998634136899889996257622899999976089577998069762465456
Q gi|254780659|r 116 IMGRVF--M-NP----LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQ 188 (274)
Q Consensus 116 l~Gr~f--M-~~----~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~r 188 (274)
|.-.-- + .| .+.+|-.++.+.+++++.++.++.|++=-|.-...+ +.++.-++| |.+|+|=|+|....+..
T Consensus 824 ltT~eT~~~ssP~~~v~F~D~vetaq~~V~eLk~~~GVd~II~LsHlG~~~D-~~lA~~V~G-IDVIIgGHSHTll~~~~ 901 (1260)
T PRK09419 824 LTTEDTAYTSSPGKNIEFKDAYESAEKTVKELQEKEKVNKIIALTHIGSNRD-LELAEKVKG-IDLIIGGHTHTLVDKLK 901 (1260)
T ss_pred ECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-HHHHHHCCC-CCEEECCCCCCCCCCCC
T ss_conf 5268875566899996673799999999999986369998999967886323-999970899-98897288887778763
Q ss_pred HC
Q ss_conf 40
Q gi|254780659|r 189 IL 190 (274)
Q Consensus 189 IL 190 (274)
..
T Consensus 902 ~v 903 (1260)
T PRK09419 902 VV 903 (1260)
T ss_pred CC
T ss_conf 14
No 8
>pfam00149 Metallophos Calcineurin-like phosphoesterase. This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues.
Probab=98.24 E-value=3e-05 Score=54.92 Aligned_cols=170 Identities=21% Similarity=0.210 Sum_probs=104.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHH---HHHH-CCCCEEEECHHHHCCCCHH
Q ss_conf 92699972027688999999808988860998999917004788678999999---9983-7998999342653022204
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFC---EMME-TGIDVITTGNHVWDKREAL 76 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~---~l~~-~GvDviT~GNH~wd~kei~ 76 (274)
|||++++|+=+..........+.++..+.++|+||.-|.++..|.-....... +..+ ..-.+++.|||=|....-.
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~ 80 (186)
T pfam00149 1 MRILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKAPGPVYLVRGNHDFDSGNSV 80 (186)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf 97999958968836799999999972899998899836744468641899999998863079857996178733345566
Q ss_pred HHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 75421893897500798887540799984899289999960000588332598999999986341368998899962576
Q gi|254780659|r 77 VFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAE 156 (274)
Q Consensus 77 ~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaE 156 (274)
........ ..+.+....... .................. . ..................+..++-.|+-
T Consensus 81 ~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~H~p 147 (186)
T pfam00149 81 LGFYLECA-GLPYVLGNGDVS---------NGTVEIVGLSSLYGKGGG-L--VWEEFLELLDLLLLAALVDGKILLVHGP 147 (186)
T ss_pred HHHHHHCC-CCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCH-H--HHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 50355402-333334322122---------343221244432346877-9--9999999985181115568859998799
Q ss_pred CHH------------HHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 228------------999999760895779980697624
Q gi|254780659|r 157 TTS------------EKQCFAHFVDSRASLVVGTHTHIP 183 (274)
Q Consensus 157 aTS------------EK~A~g~~lDGrVsaVvGTHTHV~ 183 (274)
..+ .....-...+..+..|+.-|+|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GH~H~~ 186 (186)
T pfam00149 148 LSPSLDSGDDIYLFGEEALEDLLKDNGVDLVLRGHTHVP 186 (186)
T ss_pred CCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEECCEECC
T ss_conf 888655577405549999999999779989997958477
No 9
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.54 E-value=0.0075 Score=39.34 Aligned_cols=168 Identities=18% Similarity=0.131 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCCC----------------CCCCHHHHHHHHHCCCCEEEECHHHHCC-CC-
Q ss_conf 88999999808988860998999917004788----------------6789999999983799899934265302-22-
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGG----------------FGITEKIFCEMMETGIDVITTGNHVWDK-RE- 74 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G----------------~Git~~~~~~l~~~GvDviT~GNH~wd~-ke- 74 (274)
-|..-+...+.+.|+|..=-+.+=||.-.-|- -|-+--.++.+-.+|-|+.|+|||=|+- -+
T Consensus 69 ~GLar~AtLI~~~R~e~~NtlLvDNGD~iQGtPl~dy~a~~~~~~~~~~~~~HPmi~AMN~LgYDa~tLGNHEFNYGLd~ 148 (1260)
T PRK09419 69 FGLAQTATLIEKARKENPNTLLVDNGDLIQGNPLGEYAVKYEKDNIIFGNKTHPIILVMNALGYDAGTLGNHEFNYGLDF 148 (1260)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCHHH
T ss_conf 68999999999999648984999688512677067888751545556789978899997650887632446542157899
Q ss_pred HHHHHHHCCCEEEECCCCCCCCC----CCEEEEEC--------CCCCEEEEEEEEHHHCC---------CCCCCCHHHHH
Q ss_conf 04754218938975007988875----40799984--------89928999996000058---------83325989999
Q gi|254780659|r 75 ALVFSQRHCKFLRPANYPPNTPG----NGSGLYCA--------KNGSNVLVANIMGRVFM---------NPLLDDPFRTA 133 (274)
Q Consensus 75 i~~~i~~~~~ilRP~N~p~~~PG----~G~~i~~~--------~~g~ki~Vinl~Gr~fM---------~~~~d~PF~~~ 133 (274)
+-..+.+.+.=+-.+|.-.. -| +.|.|.+. ..+.||+|+-+.----| +-.+++|-+++
T Consensus 149 L~~~i~~a~fPvl~ANv~~~-~g~~~f~PY~I~er~~~d~~g~~~~vKVGiiG~vpPqI~~WDk~~L~Gkv~~~Dive~A 227 (1260)
T PRK09419 149 LDGTIKGANLPIVNANLKTL-DGKRVYTPYTIKDKTLTDENGRKHGVKVGYIGFVPPQIMTWDKKNLKGQYEVKDITESA 227 (1260)
T ss_pred HHHHHHCCCCCEEEEEEECC-CCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCEEECCHHHHH
T ss_conf 99998559998896565648-99875488799988762588872554999993279986535587755857977999999
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCHHHH-----HHHHHHHCC---CEEEEEECCCCC
Q ss_conf 9998634136899889996257622899-----999976089---577998069762
Q gi|254780659|r 134 DKILATCPLKEQADVIVFDFHAETTSEK-----QCFAHFVDS---RASLVVGTHTHI 182 (274)
Q Consensus 134 d~~l~~~~~~~~~~~i~VDfHaEaTSEK-----~A~g~~lDG---rVsaVvGTHTHV 182 (274)
.+.+.+.+ .+.+|+|++=.|.=-.+|. .-.+++|.- -+.||+.=|+|.
T Consensus 228 ~~~Vp~mk-~~GADvVIalaHsGi~~~~~~~g~ENa~~~LA~~v~GIDAIv~GHsH~ 283 (1260)
T PRK09419 228 KETIPEMK-EGGADVYIALAHSGIEKEAQSYGAENSAFDLAEKNPGIDAIVSGHQHG 283 (1260)
T ss_pred HHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 99999998-759998999526577888777776408999986299976798077560
No 10
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.51 E-value=0.0023 Score=42.67 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=86.6
Q ss_pred HHHHHHHHCCCCEEEECHHHHCC--CCHHHHHHHCCCEEEECCCCC---CCC-CCCEEEEE----CCCC----CEEEEEE
Q ss_conf 99999983799899934265302--220475421893897500798---887-54079998----4899----2899999
Q gi|254780659|r 50 KIFCEMMETGIDVITTGNHVWDK--REALVFSQRHCKFLRPANYPP---NTP-GNGSGLYC----AKNG----SNVLVAN 115 (274)
Q Consensus 50 ~~~~~l~~~GvDviT~GNH~wd~--kei~~~i~~~~~ilRP~N~p~---~~P-G~G~~i~~----~~~g----~ki~Vin 115 (274)
-.++-+-.+|-|+.|+|||=|+- .-+-..+.+.+.=+-.+|.-. +.| -+.|.|.+ ..+| .||+|+-
T Consensus 30 Pm~~aMN~lgYDa~tLGNHEFNyGld~L~~~i~~a~fPvl~ANv~~~~~g~~~f~PY~I~er~v~d~~G~~~~vKVGiiG 109 (578)
T PRK09420 30 PVYKAMNTLDYDVGNLGNHEFNYGLDFLKKALAGAKFPYVNANVIDAKTGEPLFTPYLIKEKEVKDKDGKEHTLKIGYIG 109 (578)
T ss_pred HHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 89999872098886214555556899999999648998997642217889834476599987886179967535999996
Q ss_pred EEHHHCC---------CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC-------HHHHHH--HHHHHCCCEEEEEE
Q ss_conf 6000058---------83325989999999863413689988999625762-------289999--99760895779980
Q gi|254780659|r 116 IMGRVFM---------NPLLDDPFRTADKILATCPLKEQADVIVFDFHAET-------TSEKQC--FAHFVDSRASLVVG 177 (274)
Q Consensus 116 l~Gr~fM---------~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa-------TSEK~A--~g~~lDGrVsaVvG 177 (274)
+.--.-| +-.+++|.+++.+.+++++ .+.+|+|++=.|.=- ..|-.+ ++ -++| +.|++.
T Consensus 110 ~~tP~I~~Wd~~~L~G~v~~~D~ve~Akk~Vp~lk-~~GaDvVIal~HsG~~~~~~~~~~EN~~~~La-~v~G-IDaIi~ 186 (578)
T PRK09420 110 FVPPQIMVWDKANLEGKVTVNDIVETARKYVPEMK-EKGADIVVAIPHSGISADPYKEMAENSVYYLS-EVPG-IDAIMF 186 (578)
T ss_pred CCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH-CCCC-CCEEEE
T ss_conf 47866565564324271797378999999999998-64999999971666577888887426889986-5899-988980
Q ss_pred CCCCCC
Q ss_conf 697624
Q gi|254780659|r 178 THTHIP 183 (274)
Q Consensus 178 THTHV~ 183 (274)
=|+|..
T Consensus 187 GHsH~~ 192 (578)
T PRK09420 187 GHSHAV 192 (578)
T ss_pred CCCCCC
T ss_conf 886754
No 11
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.18 E-value=0.026 Score=35.88 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCC--------------CCCC----CHHHHHHHHHCCCCEEEECHHHHCC-C
Q ss_conf 8899999980898886099899991700478--------------8678----9999999983799899934265302-2
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAG--------------GFGI----TEKIFCEMMETGIDVITTGNHVWDK-R 73 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~--------------G~Gi----t~~~~~~l~~~GvDviT~GNH~wd~-k 73 (274)
-|..-+...+.+.|++..=-+.+=||.-.-| ..|+ +--.+..+-.+|-|+.|+|||=|+- -
T Consensus 66 ~GLar~ATLIk~aRaE~~NslLvDNGD~IQGtPlgdy~A~~~~~~~~~~~~g~~HPmi~AMN~LgYDA~tLGNHEFNYGL 145 (780)
T PRK09418 66 VGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSYTHPLYRLMNLMKYDVISLGNHEFNYGL 145 (780)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCH
T ss_conf 67999999999999648982999687301587078999763234446777777688999987539877514465543688
Q ss_pred C-HHHHHHHCCCEEEECCCCC----------CCCCCCEEEEEC--------CCCCEEEEEEEE-------------HHHC
Q ss_conf 2-0475421893897500798----------887540799984--------899289999960-------------0005
Q gi|254780659|r 74 E-ALVFSQRHCKFLRPANYPP----------NTPGNGSGLYCA--------KNGSNVLVANIM-------------GRVF 121 (274)
Q Consensus 74 e-i~~~i~~~~~ilRP~N~p~----------~~PG~G~~i~~~--------~~g~ki~Vinl~-------------Gr~f 121 (274)
+ +...+.+.+.=+-.+|.-. ...-+-|.|++. +.+.||+||-+. |++.
T Consensus 146 d~L~k~l~~a~fPvl~ANV~k~d~~~~~~~~~~~f~PY~Ilek~v~d~~G~~~~VKIGIIG~vpPqI~~WDk~~L~GkV~ 225 (780)
T PRK09418 146 DYLNKVISKTEFPVINSNVYKDDKDNNEENDQNYFKPYHVFEKEVEDESGQKQKVKIGVMGFVPPQVMNWDKANLEGKVK 225 (780)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEE
T ss_conf 99999985599988975642056666655687354887999988754889712258999944787652224434457379
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-----HHHHHHHHCC--CEEEEEECCCCCCCCHHHHCCCCE
Q ss_conf 883325989999999863413689988999625762289-----9999976089--577998069762465456403672
Q gi|254780659|r 122 MNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE-----KQCFAHFVDS--RASLVVGTHTHIPTADAQILDGGT 194 (274)
Q Consensus 122 M~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE-----K~A~g~~lDG--rVsaVvGTHTHV~TaD~rILp~GT 194 (274)
..++-+++.+.+.+++ .+.+|+|++=.|.=--++ -.-.+++|.. -+.||+.=|+|.--.+ . -+|.
T Consensus 226 ----~~DiVEtAkk~Vp~mk-~~GADvIValaHsGi~~~~~~~g~ENa~~~La~VpGIDAIv~GHsH~~~~~-t--inGv 297 (780)
T PRK09418 226 ----AKDIVETAKKMVPKMK-AEGADVIVALAHSGVDKSGYNVGMENASYYLTEVPGVDAVLMGHSHTEVKD-V--FNGV 297 (780)
T ss_pred ----ECCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCC-C--CCCE
T ss_conf ----6689999999999998-749999999434566777887651079999863998758983344500247-6--5884
Q ss_pred EEEECCCCCCCHHHCCC
Q ss_conf 89840560137121035
Q gi|254780659|r 195 GYITDLGMCGDYNSSIG 211 (274)
Q Consensus 195 ayiTDvGMtG~~~SVIG 211 (274)
. +=|-|.|.|-+|
T Consensus 298 p----vVmPG~wGshLG 310 (780)
T PRK09418 298 P----VVMPGVFGSNLG 310 (780)
T ss_pred E----EECCCHHHCEEE
T ss_conf 7----756665666244
No 12
>KOG4419 consensus
Probab=97.01 E-value=0.018 Score=36.86 Aligned_cols=200 Identities=16% Similarity=0.200 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCH------HHHHHHHHCCC-CEEEECHHHHCCCCHHHHHH-------
Q ss_conf 99999980898886099899991700478867899------99999983799-89993426530222047542-------
Q gi|254780659|r 15 RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITE------KIFCEMMETGI-DVITTGNHVWDKREALVFSQ------- 80 (274)
Q Consensus 15 r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~------~~~~~l~~~Gv-DviT~GNH~wd~kei~~~i~------- 80 (274)
-.++...+.++-++-.+|.+.++.--..+|-|++. .-.+.|+++== |.+|+|||-+|+-++....+
T Consensus 71 f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~~~yD~l~lGNHEl~~~~ve~l~~~~f~~~~ 150 (602)
T KOG4419 71 FAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKMMPYDILTLGNHELYQANVENLTEEYFLPAW 150 (602)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 79999999998741699879973544468843122047825778888742852222204214444342023335556540
Q ss_pred HCCCEEEECCCCCC----CC-CCCEEEEECCCCCEEEEEEEEHHHCCC---CCCCCHHHHH---HHHHHHCCCCCCCCEE
Q ss_conf 18938975007988----87-540799984899289999960000588---3325989999---9998634136899889
Q gi|254780659|r 81 RHCKFLRPANYPPN----TP-GNGSGLYCAKNGSNVLVANIMGRVFMN---PLLDDPFRTA---DKILATCPLKEQADVI 149 (274)
Q Consensus 81 ~~~~ilRP~N~p~~----~P-G~G~~i~~~~~g~ki~Vinl~Gr~fM~---~~~d~PF~~~---d~~l~~~~~~~~~~~i 149 (274)
+.+.+.-|++.-.. .| |.-+..|..+.++++.++--..-.|=. +..+-|-+.+ ++--..++ ..+.|+|
T Consensus 151 k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~f~~~~n~~~v~~veei~~~~~~~~m~~-~~~idli 229 (602)
T KOG4419 151 KGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVGFLCASFSGAANRTVVVPVEEITQSEWEQDMVN-TTDIDLI 229 (602)
T ss_pred CCCEEECCEEEECCCHHHCCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCHHHHHHH-CCCCCEE
T ss_conf 464661114874581110525666358842675389988786223556678763351898752426888851-5686489
Q ss_pred EEECCCCCHH------HHHHHHHHHCCCEEEEEECCCCCCCC---HHH--HCCCCEEEEECCC-------------CCCC
Q ss_conf 9962576228------99999976089577998069762465---456--4036728984056-------------0137
Q gi|254780659|r 150 VFDFHAETTS------EKQCFAHFVDSRASLVVGTHTHIPTA---DAQ--ILDGGTGYITDLG-------------MCGD 205 (274)
Q Consensus 150 ~VDfHaEaTS------EK~A~g~~lDGrVsaVvGTHTHV~Ta---D~r--ILp~GTayiTDvG-------------MtG~ 205 (274)
++=-|--.+- |-.-..-+.++-.--|+|-|+|+--- |+. =|+.| -|-.+|| |++.
T Consensus 230 i~lgH~~~~~~~e~~~~~~~ir~~~p~t~IqviGGHshird~a~~d~~s~~l~~G-rypetV~~~s~~~v~v~~~~a~~~ 308 (602)
T KOG4419 230 IALGHSPVRDDDEWKSLHAEIRKVHPNTPIQVIGGHSHIRDFAVYDEKSVELESG-RYPETVGWLSINKVGVVQANATRK 308 (602)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEECCCCCEEEEEEEEE
T ss_conf 9965566554066666788876207998508987610545532037764113468-876345563046754033411212
Q ss_pred HHHCCCCCHHH
Q ss_conf 12103547467
Q gi|254780659|r 206 YNSSIGLDKEE 216 (274)
Q Consensus 206 ~~SVIG~~~~~ 216 (274)
|.|+|-.+.++
T Consensus 309 y~g~i~~e~d~ 319 (602)
T KOG4419 309 YLGPITIEFDQ 319 (602)
T ss_pred EEEEEEEEHHH
T ss_conf 55457864110
No 13
>TIGR01530 nadN NAD nucleotidase; InterPro: IPR006420 This family describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5-nucleotidases and has NMN 5-nucleotidase activity for NMN, AMP, etc.; GO: 0008253 5'-nucleotidase activity.
Probab=96.47 E-value=0.019 Score=36.69 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH----------HCCCCEEEECHHHHCC--CCHHHHHH
Q ss_conf 88999999808988860998999917004788678999999998----------3799899934265302--22047542
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM----------ETGIDVITTGNHVWDK--REALVFSQ 80 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~----------~~GvDviT~GNH~wd~--kei~~~i~ 80 (274)
-|-.||...|.+||++++=-+|.--| =-|+-..|.-|| .+|-|.+|+|||-||. .-+..+++
T Consensus 32 GGy~A~~~~~~~LR~~~KN~LVLHAG------DA~~GTLY~TLF~G~ADA~~MN~~~F~yFTLGNHEFD~GNEGL~~lL~ 105 (550)
T TIGR01530 32 GGYAALVAKLNKLRKKYKNALVLHAG------DALIGTLYFTLFRGRADAVLMNAANFDYFTLGNHEFDAGNEGLKKLLE 105 (550)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEECC------HHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 30678899999988860786376110------357888887631774212200047965032476233554558998644
Q ss_pred HCCC-EEEECCCCCCCC------CCCEEEEECCCCCEEEEEEEEHH---HCC-CC----CCCCHHHHHHHHHHHCCCCCC
Q ss_conf 1893-897500798887------54079998489928999996000---058-83----325989999999863413689
Q gi|254780659|r 81 RHCK-FLRPANYPPNTP------GNGSGLYCAKNGSNVLVANIMGR---VFM-NP----LLDDPFRTADKILATCPLKEQ 145 (274)
Q Consensus 81 ~~~~-ilRP~N~p~~~P------G~G~~i~~~~~g~ki~Vinl~Gr---~fM-~~----~~d~PF~~~d~~l~~~~~~~~ 145 (274)
--+= +| -||.-|..- =+-|.|++. .|+||+||-|=-- |-- .| .+-+-..++..+-.+.+ +..
T Consensus 106 ~L~~PVL-SANV~P~~~S~L~~~WKP~~I~~~-~GE~I~~IGLDTV~KTV~SSSPGKD~~F~DEI~~~~~~~~~l~-QQG 182 (550)
T TIGR01530 106 YLKVPVL-SANVVPDKASILYNKWKPYDIVEV-DGEKIAVIGLDTVKKTVESSSPGKDVKFIDEIEAVRIAAVELK-QQG 182 (550)
T ss_pred HHCCCEE-EECCCCCCCCHHHCCCCCCCEEEE-CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCC
T ss_conf 4157635-532577720011025785100353-7858999830343210235877886515657899999999876-378
Q ss_pred CCEEEEECCCCCHHHHHH-HHHHHCCCEEEEEECCCCCCCCHHHH
Q ss_conf 988999625762289999-99760895779980697624654564
Q gi|254780659|r 146 ADVIVFDFHAETTSEKQC-FAHFVDSRASLVVGTHTHIPTADAQI 189 (274)
Q Consensus 146 ~~~i~VDfHaEaTSEK~A-~g~~lDGrVsaVvGTHTHV~TaD~rI 189 (274)
.+-||+==|| =|||+. .|.-..| +..+|---||----|+.+
T Consensus 183 ~NKIILLSHA--G~EKN~EIAQ~~~~-IDVIV~GD~HYL~G~~~L 224 (550)
T TIGR01530 183 VNKIILLSHA--GFEKNIEIAQKVSD-IDVIVSGDSHYLLGDDEL 224 (550)
T ss_pred CCEEEEEECC--CCCCCCHHHCCCCC-EEEEEECCEEEECCCCCC
T ss_conf 4346653117--86224020014266-007985770245255331
No 14
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.66 E-value=0.22 Score=29.84 Aligned_cols=218 Identities=18% Similarity=0.247 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCEECCC---------CC----CCCHHHHHHHHHCCCCEEEECHHHHCCC-C-HH
Q ss_conf 68899999980898886099899991700478---------86----7899999999837998999342653022-2-04
Q gi|254780659|r 12 KTGRSIVYEMLPRLIRDFQLDFVIANGENSAG---------GF----GITEKIFCEMMETGIDVITTGNHVWDKR-E-AL 76 (274)
Q Consensus 12 ~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~---------G~----Git~~~~~~l~~~GvDviT~GNH~wd~k-e-i~ 76 (274)
+-|..-....+.+.|+|..--+.+=||.-.-| .. |-.--.++.+-.+|-|+.|+|||-|+-- | +.
T Consensus 141 ~~GLaRtAtLI~~aR~E~~NslLvDNGD~iQGsPLgDY~A~~~~~~~g~~HP~~~AMN~LgYDA~tLGNHEFNYGLdfL~ 220 (810)
T PRK11907 141 TLGLAKTAVLIEEAKKENPNTVLVDNGDTIQGTPLGTYKAIVDPVAEGEQHPMYAALEALGYDAGTLGNHEFNYGLDYLK 220 (810)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHH
T ss_conf 63478999999999863687499847840167720546753067777875879999875087520245554334789999
Q ss_pred HHHHHCCCEEEECCCCCCCCC----CCEEEEEC----CCC----CEEEEE-------------EEEHHHCCCCCCCCHHH
Q ss_conf 754218938975007988875----40799984----899----289999-------------96000058833259899
Q gi|254780659|r 77 VFSQRHCKFLRPANYPPNTPG----NGSGLYCA----KNG----SNVLVA-------------NIMGRVFMNPLLDDPFR 131 (274)
Q Consensus 77 ~~i~~~~~ilRP~N~p~~~PG----~G~~i~~~----~~g----~ki~Vi-------------nl~Gr~fM~~~~d~PF~ 131 (274)
..+...+.=+-.+|.-...-| +-|.|.+. .+| .||++| ||.|+|- .++.-+
T Consensus 221 ~~l~~A~FPvV~ANV~d~~t~~p~f~PY~Iler~v~D~~G~~~~lKIGvIGfvPPQIm~WDk~~LeGkV~----~~DIVe 296 (810)
T PRK11907 221 KVIATANMPIVNANVLDPKTGDFVYKPYKIITKTFTDTTGRKVTLNIGITGIVPPQILNWDKANLEGKVI----VRDSVE 296 (810)
T ss_pred HHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCEEECHHHCCCCEE----ECCHHH
T ss_conf 9985599988844123588898154776999988776899874378999962597421531857639769----556899
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCC-----HHHHHHHHHHHCC--CEEEEEECCCCC--CCCH-----HHH----CCCC
Q ss_conf 99999863413689988999625762-----2899999976089--577998069762--4654-----564----0367
Q gi|254780659|r 132 TADKILATCPLKEQADVIVFDFHAET-----TSEKQCFAHFVDS--RASLVVGTHTHI--PTAD-----AQI----LDGG 193 (274)
Q Consensus 132 ~~d~~l~~~~~~~~~~~i~VDfHaEa-----TSEK~A~g~~lDG--rVsaVvGTHTHV--~TaD-----~rI----Lp~G 193 (274)
++.+.+.+.+ .+.+|+|++=-|.-- ..-..-.+++|.. -+.||+--|+|- |..| +.+ ..+|
T Consensus 297 tA~~~VP~Mk-a~GADvIIALaHSGi~~~~~~~~~ENa~~~LA~V~GIDAIl~GHsH~vFPs~~~~~~~~~~~gvD~~kG 375 (810)
T PRK11907 297 AIRDIVPTMR-AAGADIILVLSHSGIGDDRYEKGEENVGYQIASIKGVDAVVTGHSHAEFPSGNGTGFYEKYPGVDGING 375 (810)
T ss_pred HHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999998-748989999236577788777420245677633898657971665412679866530014677642236
Q ss_pred EEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf 28984056013712103547467898885168865411157871999
Q gi|254780659|r 194 TGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240 (274)
Q Consensus 194 TayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~ 240 (274)
|--=.-+=|-|.|.|-+|.= .=.|.... .+..+..+.+.+-
T Consensus 376 tinGvPaVMpG~wGsHLGvI-----DL~L~~~~-g~W~V~~~~a~~r 416 (810)
T PRK11907 376 KINGTPVTMAGKYGDHLGII-----DLKLSYTD-GKWKVTESKAKIR 416 (810)
T ss_pred CCCCCCEECCCCCCCEEEEE-----EEEEEECC-CEEEEECCEEEEE
T ss_conf 38876405676422502148-----77889729-9789924651476
No 15
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.20 E-value=0.81 Score=26.16 Aligned_cols=98 Identities=13% Similarity=0.207 Sum_probs=69.6
Q ss_pred EEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf 99972027-688999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r 4 LFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274)
Q Consensus 4 LfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274)
|.+=|+.+ +.||....+.+.++.++..+-+.+ |-|| |.+.+++++++|+|-+..|..++.+++++.-+.+
T Consensus 47 l~ivDld~s~~~~~~~~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~i~~~~~ 118 (253)
T PRK02083 47 LVFLDITASSEGRDTMKDVVERVAEQVFIPLTV--------GGGIRSVEDARRLLRAGADKVSINSAAVADPELITELAD 118 (253)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHH
T ss_conf 999956266457741799999999863987785--------176213898768987798789999846538535578897
Q ss_pred -C--CCEEEECCCCCCCCCCCEEEEECCCCCE
Q ss_conf -8--9389750079888754079998489928
Q gi|254780659|r 82 -H--CKFLRPANYPPNTPGNGSGLYCAKNGSN 110 (274)
Q Consensus 82 -~--~~ilRP~N~p~~~PG~G~~i~~~~~g~k 110 (274)
. ..|+--+++-.+.-..+|.+++. ++++
T Consensus 119 ~~G~q~Iv~siD~~~~~~~~~~~v~~~-~~~~ 149 (253)
T PRK02083 119 RFGSQCIVVAIDAKRDGEPGRWEVFTH-GGRK 149 (253)
T ss_pred HCCCEEEEEEEEEEECCCCCEEEEEEC-CCCC
T ss_conf 469835999999887376871899980-7841
No 16
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.67 E-value=0.61 Score=26.95 Aligned_cols=59 Identities=22% Similarity=0.394 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH---HCCCEEEEEECCCCCCCCHHHHCC
Q ss_conf 3259899999998634136899889996257622899999976---089577998069762465456403
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHF---VDSRASLVVGTHTHIPTADAQILD 191 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~---lDGrVsaVvGTHTHV~TaD~rILp 191 (274)
..++|...++.+.+. .++.| -||.||+..-..+-.+ ..-++..++.-.|.+..-. .+|+
T Consensus 69 Mv~~P~~~i~~~~~~-----g~d~I--~~H~Ea~~~~~~~i~~ik~~g~k~Glalnp~T~~~~l~-~~l~ 130 (220)
T PRK05581 69 MVENPDRYVPDFAKA-----GADII--TFHVEASEHIHRLLQLIKEAGIKAGLVLNPATPLEYLE-YVLP 130 (220)
T ss_pred EEECHHHHHHHHHHC-----CCCEE--EECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HHHH
T ss_conf 971888879999973-----99889--98167502799999999974997046766999989999-9987
No 17
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=92.00 E-value=0.32 Score=28.75 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHC------------CCEEEEEECCCCCCCCH
Q ss_conf 325989999999863413689988999625762289999997608------------95779980697624654
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVD------------SRASLVVGTHTHIPTAD 186 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lD------------GrVsaVvGTHTHV~TaD 186 (274)
...+|...++.+.+. .+|. +-||.|||..-...--++. =++...+--+|-+..-.
T Consensus 76 MV~~P~~~i~~~~~a-----Gad~--it~H~Ea~~~~~~~i~~i~~~~~~~~~~~~~~~~GlAlnP~Tpve~l~ 142 (235)
T PRK08091 76 MVADQWTVAKACVKA-----GAHC--ITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVLRGISLCPATPLDVLI 142 (235)
T ss_pred EECCHHHHHHHHHHC-----CCCE--EEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 338889999999975-----9989--997545555889999999983420222220750138979999889999
No 18
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.01 E-value=1.5 Score=24.50 Aligned_cols=94 Identities=17% Similarity=0.284 Sum_probs=70.8
Q ss_pred EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-+ +.|+..-.+.+.++.++..+-+.+ |-|| |.+.+++++++|+|-|..|..++.+++++.-+-
T Consensus 46 ~lhivDld~a~~~~~~n~~~I~~i~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~~p~~~~~~~ 117 (232)
T TIGR03572 46 ELIVLDIDASKRGREPLFELISNLAEECFMPLTV--------GGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAA 117 (232)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------EECEEEHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHH
T ss_conf 9999968764348821799999999972985899--------71330389999999769968993454521935778999
Q ss_pred H-C--CCEEEECCCCCCCCCCCEEEEE
Q ss_conf 1-8--9389750079888754079998
Q gi|254780659|r 81 R-H--CKFLRPANYPPNTPGNGSGLYC 104 (274)
Q Consensus 81 ~-~--~~ilRP~N~p~~~PG~G~~i~~ 104 (274)
+ . .+|+--+.+-.+..+..|.++.
T Consensus 118 ~~~G~q~ivvsiD~k~~~~~~~~~v~~ 144 (232)
T TIGR03572 118 RRFGSQCVVVSIDVKKELDGSDYKVYS 144 (232)
T ss_pred HHCCCCCEEEEEEEECCCCCCCEEEEE
T ss_conf 986994589999984167787279996
No 19
>PRK02621 consensus
Probab=90.87 E-value=1.5 Score=24.42 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=71.1
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+....+.+.++.++-.+-+.+ |-|| |.+.+++++++|+|-+..|..++.+++++.-+-
T Consensus 46 ~lhivDld~a~~~~~~~~~~I~~i~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkVii~s~a~~np~~~~~~~ 117 (254)
T PRK02621 46 ELVFLDITATHEGRATLIDVVYRTAEQVFIPLTV--------GGGISSLEGIKELLRAGADKVSLNSAAVRDPDLVRQAS 117 (254)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEEEHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHH
T ss_conf 9999826676567542899999999867985899--------63353579999999749998999886764735445568
Q ss_pred HC---CCEEEECCCCCCCCC-CCEEEEEC
Q ss_conf 18---938975007988875-40799984
Q gi|254780659|r 81 RH---CKFLRPANYPPNTPG-NGSGLYCA 105 (274)
Q Consensus 81 ~~---~~ilRP~N~p~~~PG-~G~~i~~~ 105 (274)
+. ..|+--+.+-.+... .||.+|..
T Consensus 118 ~~fG~q~Iv~siD~k~~~~~~~gw~~~~~ 146 (254)
T PRK02621 118 DRFGSQCIVVAIDARRRKPDNPGWDVYVR 146 (254)
T ss_pred HHCCCCCEEEEEEEECCCCCCCCEEEEEC
T ss_conf 75698433999995535347886289966
No 20
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=90.58 E-value=0.64 Score=26.81 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH---HHHCCCEEEEEECCCCCC
Q ss_conf 32598999999986341368998899962576228999999---760895779980697624
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFA---HFVDSRASLVVGTHTHIP 183 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g---~~lDGrVsaVvGTHTHV~ 183 (274)
...+|...++.+.+. .++.| -||.||+..-..+- ....-|+..++--.|-+-
T Consensus 66 Mv~~P~~~i~~~~~~-----g~d~i--t~H~Ea~~~~~~~i~~Ik~~g~k~GlAlnP~T~i~ 120 (210)
T PRK08005 66 MVSSPQRWLPWLAAI-----RPGWI--FIHAESVQNPSEILADIRAIGAKAGLALNPATPLL 120 (210)
T ss_pred EECCHHHHHHHHHHC-----CCCEE--EEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 868889999999972-----99859--99356776999999999974980788837999879
No 21
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=90.02 E-value=1.8 Score=23.95 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=73.9
Q ss_pred CEEEEEEECC-CH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHH----HHHHHH-CCCCEEEECHHHH---
Q ss_conf 9269997202-76-889999998089888609989999170047886789999----999983-7998999342653---
Q gi|254780659|r 1 MRLLFLGDIV-GK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKI----FCEMME-TGIDVITTGNHVW--- 70 (274)
Q Consensus 1 MkiLfiGDIv-G~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~----~~~l~~-~GvDviT~GNH~w--- 70 (274)
+||+++-|+= |. .+.+.+++.+..+. +.+||+|+.-|............. .++|.+ +|+ ...+|||=+
T Consensus 49 lrI~~lSDlH~g~~~~~~~l~~~v~~~n-~~~PDlVv~tGD~vd~~~~~~~~~~~~~l~~L~~~~gv-yaVlGNHD~~~~ 126 (270)
T PRK11340 49 FKILFLADLHYSRFVPLSLISDAIALGI-EQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPT-FACFGNHDRPVG 126 (270)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCE-EEECCCCCCCCC
T ss_conf 5899992566889889899999999987-12999999867634477721079999998740133885-997378642245
Q ss_pred -CCCC-HHHHHHHCC-CEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf -0222-047542189-3897500798887540799984899289999960000588332598999999986341368998
Q gi|254780659|r 71 -DKRE-ALVFSQRHC-KFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQAD 147 (274)
Q Consensus 71 -d~ke-i~~~i~~~~-~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~ 147 (274)
++.+ +.+.+++.. ++|+=- . ..+.. +|.+ +++.|.- ++...-...... +.++.+
T Consensus 127 ~~~~~~i~~~l~~~Gi~vL~N~---------~-~~i~~-~~~~---~~l~Gv~-------D~~~~~~~~~~~--~~~~~p 183 (270)
T PRK11340 127 TEKNHLIGETLKSAGITVLFNQ---------A-TVIAT-PNRQ---FELVGTG-------DLWAGQCKPPPA--SEANLP 183 (270)
T ss_pred CCCHHHHHHHHHHCCCEEEECC---------E-EEEEE-CCEE---EEEEECC-------CHHHCCCCCCCC--CCCCCC
T ss_conf 4206999999997799892088---------2-99975-9939---9999627-------646555667612--146898
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 899962576228999999760895779980697624
Q gi|254780659|r 148 VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIP 183 (274)
Q Consensus 148 ~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~ 183 (274)
.|+++ |.=...|. .-+..+..++-=|||=-
T Consensus 184 ~IlL~-H~P~~~~~-----~~~~~~dL~LSGHTHGG 213 (270)
T PRK11340 184 RLVLA-HNPDSKEV-----MRDEPWDLMLCGHTHGG 213 (270)
T ss_pred EEEEE-ECCCCHHH-----CCCCCCCEEEEECCCCC
T ss_conf 69998-18982344-----35568557997237788
No 22
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=90.01 E-value=1 Score=25.52 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH-HHH-HH--HHHHCCCEEEEEECCCCCCCCH
Q ss_conf 2598999999986341368998899962576228-999-99--9760895779980697624654
Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTS-EKQ-CF--AHFVDSRASLVVGTHTHIPTAD 186 (274)
Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTS-EK~-A~--g~~lDGrVsaVvGTHTHV~TaD 186 (274)
..+|...++++.+. .++. +-||.||++ ... .+ -.-..-|+..++--.|-+.+-+
T Consensus 66 v~~P~~~i~~~~~~-----gad~--It~H~Ea~~~~~~~~i~~Ik~~g~k~GlAlnP~Tpi~~i~ 123 (227)
T PRK09722 66 VTRPQDYIAQLADA-----GADF--ITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVEAIK 123 (227)
T ss_pred ECCHHHHHHHHHHC-----CCCE--EEECHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 65888889999854-----9989--9956565056599999999986997223338999866887
No 23
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=89.53 E-value=1.6 Score=24.28 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH---HHHHHHCCCEEEEEECCCCCCCCHHHHCC
Q ss_conf 2598999999986341368998899962576228999---99976089577998069762465456403
Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQ---CFAHFVDSRASLVVGTHTHIPTADAQILD 191 (274)
Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~---A~g~~lDGrVsaVvGTHTHV~TaD~rILp 191 (274)
.++|.+.++.+.+. .+|. |=||+|||..-. ..-.-..-++..++.-.|-+..-+ .+|+
T Consensus 67 v~~P~~~i~~~~~a-----Gad~--I~~H~Ea~~~~~~~i~~Ik~~g~k~GlalnP~T~~~~l~-~~l~ 127 (220)
T PRK08883 67 VKPVDRIIPDFAKA-----GASM--ITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLAHLE-YIMD 127 (220)
T ss_pred ECCHHHHHHHHHHC-----CCCE--EEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HHHH
T ss_conf 33888889999975-----9988--998577654999999999985996688847999879999-9997
No 24
>PRK02747 consensus
Probab=89.12 E-value=2.1 Score=23.52 Aligned_cols=99 Identities=12% Similarity=0.182 Sum_probs=70.1
Q ss_pred EEEEEECCCHH-HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 69997202768-8999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGKT-GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~~-Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+.|.. |+....+.+.++.++-.+-+.+ |-|| +.+.+++++++|+|-+..|-.++.+++++.-+-
T Consensus 46 elh~vDl~~a~~~~~~~~~lI~~i~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~np~l~~~~~ 117 (257)
T PRK02747 46 ELCFLDITASHENRGTMLDVVARTAEQCFMPLTV--------GGGVRTVDDIRKLLLAGADKVSINSAAVARPEFVAEAA 117 (257)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHH
T ss_conf 8999947677567552899999999866998898--------48820738878998769968983444654834777788
Q ss_pred H-CC--CEEEECCCCCC---CCCCCEEEEECCCCCE
Q ss_conf 1-89--38975007988---8754079998489928
Q gi|254780659|r 81 R-HC--KFLRPANYPPN---TPGNGSGLYCAKNGSN 110 (274)
Q Consensus 81 ~-~~--~ilRP~N~p~~---~PG~G~~i~~~~~g~k 110 (274)
+ .. .|+--+++-.. .-..+|.+++. ++++
T Consensus 118 ~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~-~~~~ 152 (257)
T PRK02747 118 DKFGSQCIVVAIDAKRVSPAGENDRWEIFTH-GGRK 152 (257)
T ss_pred HHCCCEEEEEEEEEEECCCCCCCCCEEEEEC-CCCE
T ss_conf 7559657999998775157677873899988-9846
No 25
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=88.72 E-value=2.1 Score=23.50 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH-H--HHHCCCEEEEEECCCCCCCC
Q ss_conf 259899999998634136899889996257622899999-9--76089577998069762465
Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCF-A--HFVDSRASLVVGTHTHIPTA 185 (274)
Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~-g--~~lDGrVsaVvGTHTHV~Ta 185 (274)
.++|.+.++.+.+. .+|. |=||+|||..-..+ . .-..=++..++.-.|.+..-
T Consensus 71 v~~P~~~i~~~~~a-----Gad~--i~~H~Ea~~~~~~~i~~ik~~g~k~GlalnP~T~~~~l 126 (223)
T PRK08745 71 VEPVDRIVPDFADA-----GATT--ISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDIL 126 (223)
T ss_pred ECCHHHHHHHHHHC-----CCCE--EEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf 33989999999973-----9978--99960644299999999998398446774699987999
No 26
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=88.69 E-value=2.2 Score=23.33 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=101.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEC--CCCCCCCHHH---HHHHHHCCCCEEE-ECHHHHCCCC
Q ss_conf 92699972027688999999808988860998999917004--7886789999---9999837998999-3426530222
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENS--AGGFGITEKI---FCEMMETGIDVIT-TGNHVWDKRE 74 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENa--a~G~Git~~~---~~~l~~~GvDviT-~GNH~wd~ke 74 (274)
||+||+-|+-|+-. ..+.+-..+.+.++|++|+-|.=+ .-|.+.-.+. .++|...++-|+. .|| -|.++
T Consensus 4 mkil~vtDlHg~~~---~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGN--cD~~~ 78 (226)
T COG2129 4 MKILAVTDLHGSED---SLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGN--CDPPE 78 (226)
T ss_pred CEEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEECCEEHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC--CCHHH
T ss_conf 05999840333357---89999998760368889995335213238637877666788887459708997588--98378
Q ss_pred HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEE-----
Q ss_conf 047542189389750079888754079998489928999996000058833259899999998634136899889-----
Q gi|254780659|r 75 ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVI----- 149 (274)
Q Consensus 75 i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i----- 149 (274)
+...+.+...-+ -| .+.+. ++ +.++- +|-..-.| .+.|++.-+..+... ++.-.+.+
T Consensus 79 v~~~l~~~~~~v---------~~---~v~~i-~~--~~~~G-~Ggsn~tp-~nt~~e~~E~~I~s~-l~~~v~~~~~~~~ 140 (226)
T COG2129 79 VIDVLKNAGVNV---------HG---RVVEI-GG--YGFVG-FGGSNPTP-FNTPREFSEDEIYSK-LKSLVKKADNPVN 140 (226)
T ss_pred HHHHHHHCCCCC---------CC---CEEEE-CC--CEEEE-ECCCCCCC-CCCCCCCCHHHHHHH-HHHHHHCCCCCCE
T ss_conf 889998636520---------13---16885-58--08997-55628998-888001579999998-9988751367406
Q ss_pred EEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCH
Q ss_conf 99625762289999997608957799806976246545640367289840560137121035474
Q gi|254780659|r 150 VFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDK 214 (274)
Q Consensus 150 ~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~ 214 (274)
++-|||----++ +| ...| -+||....-|=+- .-+|--++.||--+--=|+|+
T Consensus 141 Il~~HaPP~gt~------~d----~~~g-~~hvGS~~vr~~i--eefqP~l~i~GHIHEs~G~d~ 192 (226)
T COG2129 141 ILLTHAPPYGTL------LD----TPSG-YVHVGSKAVRKLI--EEFQPLLGLHGHIHESRGIDK 192 (226)
T ss_pred EEEECCCCCCCC------CC----CCCC-CCCCCHHHHHHHH--HHHCCCEEEEEEECCCCCCCC
T ss_conf 999537998865------46----7777-6544609999999--974975689710003556333
No 27
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.55 E-value=1.7 Score=24.11 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=7.2
Q ss_pred CCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 8678999999998379989993
Q gi|254780659|r 44 GFGITEKIFCEMMETGIDVITT 65 (274)
Q Consensus 44 G~Git~~~~~~l~~~GvDviT~ 65 (274)
|+|++++.+..|.++||+.|-.
T Consensus 195 G~Gis~e~a~~l~~~Gv~~IdV 216 (351)
T PRK05437 195 GFGISKETAKRLADAGVKAIDV 216 (351)
T ss_pred CCCCCHHHHHHHHHCCCCEEEE
T ss_conf 5788999999999679999995
No 28
>PRK02145 consensus
Probab=87.88 E-value=2.5 Score=23.00 Aligned_cols=93 Identities=11% Similarity=0.191 Sum_probs=66.5
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+....+.+.++.++..+-+.+ |-|| +.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus 47 elhivDld~a~~~~~~~~~~I~~i~~~~~iPi~v--------GGGIrs~e~~~~ll~~GadkVii~s~a~~np~~v~~~~ 118 (257)
T PRK02145 47 ELTFLDITATSDGRDLILPIIEAVASQVFIPLTV--------GGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAA 118 (257)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCCHHHHHH
T ss_conf 8999978887667540899999999656874896--------27730468899999819988984155665930224578
Q ss_pred H-C--CCEEEECCCCC----CCCCCCEEEEE
Q ss_conf 1-8--93897500798----88754079998
Q gi|254780659|r 81 R-H--CKFLRPANYPP----NTPGNGSGLYC 104 (274)
Q Consensus 81 ~-~--~~ilRP~N~p~----~~PG~G~~i~~ 104 (274)
+ . .+|+--+++-. ..|+ .|.+++
T Consensus 119 ~~fG~q~Iv~siD~k~~~~~~~~~-~~~v~~ 148 (257)
T PRK02145 119 DKYGSQCIVVAIDAKRVSADGEPP-RWEVFT 148 (257)
T ss_pred HHCCCCCEEEEEEEEECCCCCCCC-EEEEEE
T ss_conf 766983449999987336777775-089997
No 29
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=87.72 E-value=1.8 Score=23.96 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=5.6
Q ss_pred CCCHHHHHHHHHCCCCEE
Q ss_conf 789999999983799899
Q gi|254780659|r 46 GITEKIFCEMMETGIDVI 63 (274)
Q Consensus 46 Git~~~~~~l~~~GvDvi 63 (274)
|++++.+..+.++||+.|
T Consensus 189 Gis~eda~~l~~~Gv~~I 206 (326)
T cd02811 189 GISRETAKRLADAGVKAI 206 (326)
T ss_pred CCCHHHHHHHHHCCCCEE
T ss_conf 999999999996799999
No 30
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=87.41 E-value=2.4 Score=23.15 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=48.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 2699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
+|..||||=|. .+.+.+.|.++.-...-|.+|.-|.-...|-- +.+..+.+.+..+-++ +|||=. -++++++
T Consensus 18 ~iyvIGDIHGc--~d~L~~lL~~i~~~~~~D~LI~lGDlIDRGPd-S~~vl~ll~~~~~~~v-~GNHE~---mll~~~~ 89 (218)
T PRK11439 18 HIWLVGDIHGC--FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQ-SLRCLQLLREHWVRAV-RGNHEQ---MALDALA 89 (218)
T ss_pred EEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEECCCEECCCCC-HHHHHHHHHHCCCEEE-ECCHHH---HHHHHHH
T ss_conf 69999646589--99999999963899546789985860178978-7999999982898497-614799---9998764
No 31
>PRK03220 consensus
Probab=87.17 E-value=2.7 Score=22.75 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+....+.+.++.++-.+-+.+ |-|| +.+.++++|++|+|-|..|..++.+++.+.-+-
T Consensus 47 ~lhivDld~a~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~~~~~~ 118 (257)
T PRK03220 47 ELTFLDVTASSSGRATMLDVVRRTAEQVFIPLTV--------GGGVRTVEDVDSLLRAGADKVSVNTAAIARPELLAELA 118 (257)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEECHHHHHHCCHHHHHHH
T ss_conf 8999908887567630799999998506964898--------47858799999999819750872066775947778999
Q ss_pred H-C--CCEEEECCCCCCC-----CCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 1-8--9389750079888-----754079998489928999996000058833259899999998634136899889996
Q gi|254780659|r 81 R-H--CKFLRPANYPPNT-----PGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFD 152 (274)
Q Consensus 81 ~-~--~~ilRP~N~p~~~-----PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VD 152 (274)
+ . ..++--+.+-... --.||.+++. ++++-. --+|+..++++.+. .-..+++-|
T Consensus 119 ~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~-g~~~~t-------------~~~~~~~i~~~~~~----g~geil~td 180 (257)
T PRK03220 119 RRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTH-GGRRGT-------------GIDAVEWAARGAEL----GVGEILLNS 180 (257)
T ss_pred HHCCCEEEEEEEEEEECCCCCCCCCCCEEEEEC-CCEEEC-------------CCCHHHHHHHHHHC----CCCEEEEEE
T ss_conf 870986699999988625677434687499972-882602-------------87599999998626----988899998
Q ss_pred CCCCCHHH
Q ss_conf 25762289
Q gi|254780659|r 153 FHAETTSE 160 (274)
Q Consensus 153 fHaEaTSE 160 (274)
..-+-|.+
T Consensus 181 I~rDGt~~ 188 (257)
T PRK03220 181 MDADGTKA 188 (257)
T ss_pred ECCCCCCC
T ss_conf 86866023
No 32
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=87.03 E-value=1.9 Score=23.81 Aligned_cols=55 Identities=22% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHC---CCEEEEEECCCCCCCCH
Q ss_conf 325989999999863413689988999625762289999997608---95779980697624654
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVD---SRASLVVGTHTHIPTAD 186 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lD---GrVsaVvGTHTHV~TaD 186 (274)
.+++|...++.+.+. .++.|. ||.|+++.-..+-.+.. =++..++.-.|.+..-.
T Consensus 65 Mv~~P~~~i~~~~~~-----g~d~I~--~H~E~~~~~~~~i~~ik~~g~~~Glal~p~T~~~~l~ 122 (211)
T cd00429 65 MVENPERYIEAFAKA-----GADIIT--FHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLE 122 (211)
T ss_pred EECCHHHHHHHHHHH-----CCCEEE--ECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf 871887769999970-----998899--8643220899999999973987235754899989999
No 33
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.76 E-value=2.2 Score=23.38 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=78.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH-H
Q ss_conf 699972027688999999808988860998999917004788678-99999999837998999342653022204754-2
Q gi|254780659|r 3 LLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFS-Q 80 (274)
Q Consensus 3 iLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i-~ 80 (274)
-|.+=|+-|.-|+..-.+.+.++.++..+-+.+ |-|| |.+.+++++++|+|-+..|..++.+++.+.-+ +
T Consensus 45 ~lhvvDLdaa~g~~~N~~~I~~i~~~~~~piqv--------GGGIrs~e~~~~~l~~Ga~kViigS~a~~np~~~~~~~~ 116 (231)
T PRK13586 45 SIHVVDLDAAEGKGDNEEYIKRICKIGFSWIQV--------GGGIRDVEKAERLLSYDCSAIVMSTLPFTNPDTFRRIVA 116 (231)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHH
T ss_conf 899996715689984399999999745985798--------567176999999997799889976888769599999999
Q ss_pred HC--CCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf 18--9389750079888754079998489928999996000058833259899999998634136899889996257622
Q gi|254780659|r 81 RH--CKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETT 158 (274)
Q Consensus 81 ~~--~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT 158 (274)
+. .+++=-+.+.. .|+ +.+ -|..- .. -++...++++.+. .-..+++-|..-+-|
T Consensus 117 ~~G~~~iv~siD~~~----~~~----------v~~---~Gw~~--~~-~~~~~~i~~~~~~----g~~~ii~TdI~~DGt 172 (231)
T PRK13586 117 GIGENRVLVSVDYDD----RKY----------VLI---KGWKE--KS-MKVEDAISHVNSL----ESLGVIFTYVCNEGT 172 (231)
T ss_pred HHCCCCEEEEEEECC----CCE----------EEE---ECCCC--CC-CCHHHHHHHHHHC----CCCEEEEEEECCHHC
T ss_conf 849966899999758----968----------998---48726--88-6699999999975----998899976451120
Q ss_pred H
Q ss_conf 8
Q gi|254780659|r 159 S 159 (274)
Q Consensus 159 S 159 (274)
-
T Consensus 173 ~ 173 (231)
T PRK13586 173 K 173 (231)
T ss_pred C
T ss_conf 3
No 34
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=86.17 E-value=2.4 Score=23.12 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=66.5
Q ss_pred EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-| +.|+..-.+.|.++.++..+-+.+ |-|| +.+.+++++++|+|-+..|..++.+++++.-+-
T Consensus 43 elhivDld~a~~g~~~n~~~i~~i~~~~~~pi~v--------GGGIrs~~~~~~~l~~GadkVvigs~~~~n~~~~~~~~ 114 (243)
T cd04731 43 ELVFLDITASSEGRETMLDVVERVAEEVFIPLTV--------GGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIA 114 (243)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEE--------EEEEEEHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 9999706732037700799999999867986899--------85066479999999779978998984423771435788
Q ss_pred H-C--CCEEEECCCCCCCCCCCEEEEE
Q ss_conf 1-8--9389750079888754079998
Q gi|254780659|r 81 R-H--CKFLRPANYPPNTPGNGSGLYC 104 (274)
Q Consensus 81 ~-~--~~ilRP~N~p~~~PG~G~~i~~ 104 (274)
+ . .+|+=.+.+-....+ .|.++.
T Consensus 115 ~~~Gsq~Iv~siD~k~~~~~-~~~v~~ 140 (243)
T cd04731 115 KRFGSQCVVVSIDAKRRGDG-GYEVYT 140 (243)
T ss_pred HHCCCCCEEEEEEEEECCCC-CEEEEE
T ss_conf 75699309999997653789-628984
No 35
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=85.99 E-value=3.2 Score=22.34 Aligned_cols=71 Identities=18% Similarity=0.339 Sum_probs=57.4
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+..-.+.+.++.++..+-+.+ |-|| |.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus 45 ~lhvvDLd~A~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~~l~~GadkVvigS~a~~n~~~i~~~~ 116 (241)
T PRK00748 45 WLHLVDLDGAFAGRPVNLELIEAIVAAVDIPVQL--------GGGIRDLETVEAYLDAGVARVIIGTAAVKNPELVKEAC 116 (241)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCHHHHHHHH
T ss_conf 8999978542028820799999999867999998--------27707499999999769775886471033968999998
Q ss_pred H
Q ss_conf 1
Q gi|254780659|r 81 R 81 (274)
Q Consensus 81 ~ 81 (274)
+
T Consensus 117 ~ 117 (241)
T PRK00748 117 K 117 (241)
T ss_pred H
T ss_conf 6
No 36
>KOG3111 consensus
Probab=85.54 E-value=1.5 Score=24.52 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHH---CCCEEEEEECCCCCCCC
Q ss_conf 32598999999986341368998899962576228999999760---89577998069762465
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFV---DSRASLVVGTHTHIPTA 185 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~l---DGrVsaVvGTHTHV~Ta 185 (274)
...+|-+.++.+.+. -..++-||.|+|-+-..+.-++ -=+|...+--.|-|.-.
T Consensus 72 MV~~Peq~v~~~a~a-------gas~~tfH~E~~q~~~~lv~~ir~~gmk~G~alkPgT~Ve~~ 128 (224)
T KOG3111 72 MVENPEQWVDQMAKA-------GASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDL 128 (224)
T ss_pred EECCHHHHHHHHHHC-------CCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 646988876799864-------775699986432578999999997497566874899958999
No 37
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=85.31 E-value=2.9 Score=22.60 Aligned_cols=65 Identities=23% Similarity=0.219 Sum_probs=47.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCC--CCEEEECHHH
Q ss_conf 92699972027688999999808988860998999917004788678999999998379--9899934265
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETG--IDVITTGNHV 69 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~G--vDviT~GNH~ 69 (274)
|.-.+||||=|- .+.+++.|.++.-.-+-|.+|.=|.=...|-- +.+..+.+.+++ +-++ +|||=
T Consensus 1 m~tyvIGDIHGc--~~el~~LL~ki~~~~~~D~lvflGDlVdRGP~-S~~vl~~v~~l~~~~~~V-lGNHE 67 (275)
T PRK00166 1 MATYAIGDIQGC--YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPD-SLETLRFVKSLGDSAVVV-LGNHD 67 (275)
T ss_pred CCCEEEEECCCC--HHHHHHHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHHHCCCCEEE-CCCHH
T ss_conf 984488775469--99999999962899778889995635689988-299999999712670798-56437
No 38
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=84.50 E-value=2.5 Score=22.95 Aligned_cols=59 Identities=24% Similarity=0.419 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH-HH--HHHCCCEEEEEECCCCCCCCHHHHCC
Q ss_conf 325989999999863413689988999625762289999-99--76089577998069762465456403
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQC-FA--HFVDSRASLVVGTHTHIPTADAQILD 191 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A-~g--~~lDGrVsaVvGTHTHV~TaD~rILp 191 (274)
..++|.+.++.+.+. .+|. +=||+|++..-.. +- ....-|+..++--.|.+-.- +.+|+
T Consensus 65 Mv~~P~~~i~~~~~~-----g~d~--i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~~~~l-~~~l~ 126 (201)
T pfam00834 65 MVEEPDRIIPDFAEA-----GADI--ISFHAEASDHPHRTIQLIKEAGAKAGLVLNPATPLDAI-EYLLD 126 (201)
T ss_pred EEECHHHHHHHHHHC-----CCCE--EEECHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCHHH-HHHHH
T ss_conf 983776639999873-----9988--99754441379999999986497268885699860288-87674
No 39
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=84.32 E-value=3.8 Score=21.85 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=65.1
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+..-.+.+.++.++-.+-+.+ |-|| +.+.+++|+++|+|-+..|..++.+++.+.-+-
T Consensus 46 elhivDld~a~~g~~~n~~~I~~I~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~~p~~i~~~~ 117 (253)
T PRK01033 46 ELIVLDIDASRKGREPNYELIENLASECFMPLCY--------GGGIKTVEQAKRIFSLGVEKVSISTAALEDPKLITEAA 117 (253)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHH
T ss_conf 8999947454248801699999999876998898--------68812168889998679866999987863741657899
Q ss_pred H-C--CCEEEECCCCCCCCC
Q ss_conf 1-8--938975007988875
Q gi|254780659|r 81 R-H--CKFLRPANYPPNTPG 97 (274)
Q Consensus 81 ~-~--~~ilRP~N~p~~~PG 97 (274)
+ . .+|+--+.+-.+..+
T Consensus 118 ~~fG~q~IvvsiD~k~~~~~ 137 (253)
T PRK01033 118 EIYGSQSVVVSIDVKKRLFG 137 (253)
T ss_pred HHCCCCCEEEEEEEECCCCC
T ss_conf 87799769999998248778
No 40
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=83.29 E-value=1.1 Score=25.18 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH---HCCCEEEEEECCCCCCCCHHHH
Q ss_conf 3259899999998634136899889996257622899999976---0895779980697624654564
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHF---VDSRASLVVGTHTHIPTADAQI 189 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~---lDGrVsaVvGTHTHV~TaD~rI 189 (274)
...+|...++.+.+. .++.|. ||.|++..-..+-.+ ..=++..++--.|.+-+-..-+
T Consensus 71 Mv~~P~~~i~~~~~~-----gad~I~--~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~i~~l~~~l 131 (224)
T PTZ00170 71 MVSDPERWVDSFAKA-----GASQFT--FHIEATEDPKAVARKIRAAGMQVGVALKPKTPAEELFPLI 131 (224)
T ss_pred EECCHHHHHHHHHHC-----CCCEEE--ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
T ss_conf 863888879999862-----896799--8500133999999999971476455607999879999997
No 41
>PRK09453 phosphodiesterase; Provisional
Probab=83.26 E-value=4.1 Score=21.57 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=60.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCC------CCCH-HHHHHHHHCCCCEE-EECHHHHCC
Q ss_conf 926999720276889999998089888609989999170047886------7899-99999983799899-934265302
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGF------GITE-KIFCEMMETGIDVI-TTGNHVWDK 72 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~------Git~-~~~~~l~~~GvDvi-T~GNH~wd~ 72 (274)
|||++|-|+=|. ..++++.+..+++ .++|.||--|.-...|- |-+| ..++.|.+.+..++ ..|||=++-
T Consensus 1 MkI~vISDtHgn--~~ale~vl~~~~~-~~vD~iih~GDiv~~Gp~~~~~~~y~p~~v~e~l~~~~~~~~~V~GN~D~~v 77 (183)
T PRK09453 1 MKLGFASDIHGS--LPATEKALELFKQ-SGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSEV 77 (183)
T ss_pred CEEEEEEECCCC--HHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf 989999867899--6999999999875-5998999998625557776564447869999999851886899757881777
Q ss_pred CCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf 2204754218938975007988875407999848992899999
Q gi|254780659|r 73 REALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVAN 115 (274)
Q Consensus 73 kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vin 115 (274)
.+. -+++|. .|...+ ++. .|+|+.++.
T Consensus 78 d~~------------~~~~~~-~~~~~~--~~~-~g~ri~l~H 104 (183)
T PRK09453 78 DQM------------LLHFPI-MAPYQQ--VLL-EGKRLFLTH 104 (183)
T ss_pred HHH------------HHCCCC-CCCCEE--EEE-CCEEEEEEC
T ss_conf 465------------335876-898269--988-998999987
No 42
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=80.61 E-value=1.4 Score=24.65 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9998089888609989999170047886789999999983799899934
Q gi|254780659|r 18 VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274)
Q Consensus 18 v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274)
+.+.|.++-+...+=.||== =||||+++.+++|.+.||+.|=.+
T Consensus 176 ~l~~i~~~~~~~~vPVIvKE-----vG~G~S~e~a~~L~~~Gv~aiDv~ 219 (349)
T TIGR02151 176 WLEKIAEICSAVSVPVIVKE-----VGFGISKEVAKLLADAGVKAIDVS 219 (349)
T ss_pred HHHHHHHHHHHCCCCEEEEE-----CCCCCCHHHHHHHHHCCEEEEEEC
T ss_conf 89999999965289879982-----157998899999987890088707
No 43
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.23 E-value=5.7 Score=20.67 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=61.0
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-889999998089888609989999170047886789-99999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT-EKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git-~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+....+.+.++.++-.+-+.+ |-||. .+.+++++++|+|-+..|..++.+++++.-+-
T Consensus 47 ~lhlvDld~a~~~~~~n~~~I~~i~~~~~vpiqv--------GGGIrs~e~~~~ll~~GadkViigS~a~~np~~i~~~~ 118 (252)
T PRK13597 47 ELVFLDISATHEERAILLDVVARVAERVFIPLTV--------GGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELA 118 (252)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHH
T ss_conf 9999956466668663799999998626982898--------47713089999998569877983266674937899999
Q ss_pred H-C--CCEEEECCC
Q ss_conf 1-8--938975007
Q gi|254780659|r 81 R-H--CKFLRPANY 91 (274)
Q Consensus 81 ~-~--~~ilRP~N~ 91 (274)
+ . .+++=-+.+
T Consensus 119 ~~fG~q~Iv~~iD~ 132 (252)
T PRK13597 119 DHFGAQAVVLAIDA 132 (252)
T ss_pred HHCCCCCEEEEEEE
T ss_conf 87499652999988
No 44
>pfam00875 DNA_photolyase DNA photolyase. This domain binds a light harvesting cofactor.
Probab=78.18 E-value=1.6 Score=24.17 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 9808988860998999917004788678999999998379989993426
Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNH 68 (274)
Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274)
+.|++|.++++++-|.+|-|-...+.-.-.++.+.|.+.||.+.+--+|
T Consensus 78 ~~l~~l~~~~~i~~v~~n~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~ 126 (164)
T pfam00875 78 EVLPELAKELGASAVYWNRDYEPYERRRDAAVKEALREAGIEVHSFDDH 126 (164)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCE
T ss_conf 9999999967999999916789899999999999998547469997895
No 45
>PRK04281 consensus
Probab=77.75 E-value=6.3 Score=20.39 Aligned_cols=93 Identities=11% Similarity=0.201 Sum_probs=64.8
Q ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH-H
Q ss_conf 999720276-88999999808988860998999917004788678-99999999837998999342653022204754-2
Q gi|254780659|r 4 LFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFS-Q 80 (274)
Q Consensus 4 LfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i-~ 80 (274)
|.+=|+-|. .|+....+.+.++.++-.+-+.+ |-|| +.+.+++++++|+|-+..|..++.+++++.-+ +
T Consensus 47 lhivDld~a~~~~~~~~~~I~~i~~~~~vpi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~np~~l~~~~~ 118 (254)
T PRK04281 47 LTFLDITASSDNRDTILHIIEEVAGQVFIPLTV--------GGGVRTVADIRRLLNAGADKVSINTAAVTRPDLIDEAAG 118 (254)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEEECHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHH
T ss_conf 999968898777530899999998507962899--------777545188999997699889977767649267676787
Q ss_pred HC--CCEEEECCCCCCCCC-CCEEEEE
Q ss_conf 18--938975007988875-4079998
Q gi|254780659|r 81 RH--CKFLRPANYPPNTPG-NGSGLYC 104 (274)
Q Consensus 81 ~~--~~ilRP~N~p~~~PG-~G~~i~~ 104 (274)
.. ..|+--+.+-..... .+|.++.
T Consensus 119 ~fG~q~Iv~siD~k~~~~~~~~~~i~~ 145 (254)
T PRK04281 119 FFGSQAIVAAVDAKAVNPENTRWEIFT 145 (254)
T ss_pred HCCCEEEEEEEEEEEECCCCCCEEEEE
T ss_conf 559821799998885024688459997
No 46
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=77.21 E-value=2.8 Score=22.70 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHH
Q ss_conf 7899999999837998999342653022--20475421
Q gi|254780659|r 46 GITEKIFCEMMETGIDVITTGNHVWDKR--EALVFSQR 81 (274)
Q Consensus 46 Git~~~~~~l~~~GvDviT~GNH~wd~k--ei~~~i~~ 81 (274)
|++.+.+.++.++|+|++=+|==+|.++ +..+-|+.
T Consensus 177 Gv~~~ni~~~~~AGAD~~VaGSaiF~~~s~d~~~~i~~ 214 (216)
T TIGR01163 177 GVNEDNIAEVAEAGADILVAGSAIFGADSLDYKEAIRS 214 (216)
T ss_pred CCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH
T ss_conf 98976799999758989998310208886687999973
No 47
>PRK13127 consensus
Probab=76.97 E-value=6.6 Score=20.25 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=18.2
Q ss_pred HHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 0898886099899991700478867899999999837998999342653
Q gi|254780659|r 22 LPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVW 70 (274)
Q Consensus 22 Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~w 70 (274)
+.++|++.+.-+|+----|.---+|+ .+-++++.++|||-+-.=+--+
T Consensus 79 ~~~~r~~~~~pivlM~Y~N~i~~~G~-e~F~~~~~~~GvdGlIipDLP~ 126 (262)
T PRK13127 79 VKELRVDSSVPLVLMTYYNPVYRYGV-EKFVKKAAEAGVSGLIIPDLPV 126 (262)
T ss_pred HHHHHCCCCCCEEEEECCHHHHHCCH-HHHHHHHHHCCCCEEEECCCCH
T ss_conf 99974569988799966138876089-9999999875997699669997
No 48
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=76.19 E-value=6.9 Score=20.11 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=60.8
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-+. .|+..-.+.+.++.++..+.+.+ |-|| +.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus 45 ~i~ivDLda~~~~~~~n~~~i~~i~~~~~~pi~v--------gGGIrs~e~~~~~l~~Ga~kvvigs~~~~~~~~~~~~~ 116 (229)
T pfam00977 45 ELHFVDLDAAKEGRPVNLDLIEEIAEEVFIPVQV--------GGGIRSLEDAERLLSAGADKVIIGTAAVKNPELIKEAA 116 (229)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEEEHHHHHHHHHCCCCEEEECCCHHHCHHHHHHHH
T ss_conf 8999968663026810699999999866987899--------64561189999999769989995860430937899999
Q ss_pred HC---CCEEEECCC
Q ss_conf 18---938975007
Q gi|254780659|r 81 RH---CKFLRPANY 91 (274)
Q Consensus 81 ~~---~~ilRP~N~ 91 (274)
+. .+++=-+.+
T Consensus 117 ~~~g~q~iv~siD~ 130 (229)
T pfam00977 117 EKFGSQCIVVAIDA 130 (229)
T ss_pred HHCCCCCEEEEEEE
T ss_conf 98098647999987
No 49
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=74.08 E-value=7.9 Score=19.76 Aligned_cols=115 Identities=25% Similarity=0.299 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH-HCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCC
Q ss_conf 88999999808988860998999917004788678999999998-37998999342653022204754218938975007
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM-ETGIDVITTGNHVWDKREALVFSQRHCKFLRPANY 91 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~-~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~ 91 (274)
-+..-+.+..++.-++|++||+|+-+-|++- -.|+-++|++ +.|+-+|--|+-.--+ ..+-++
T Consensus 42 m~pe~~e~~~~~~l~~~~pDf~i~isPN~a~---PGP~~ARE~l~~~giP~IvI~D~p~~K--~kd~l~----------- 105 (276)
T pfam01993 42 MDPECVEEVVLDMLEEFEPDFVIYISPNPAA---PGPKKAREMLSDSGYPAVIIGDAPGLK--VKDEME----------- 105 (276)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCHHHHHHHHHCCCCEEEECCCCCHH--HHHHHH-----------
T ss_conf 7988899999999986189989997899889---995679999975699879983786332--589998-----------
Q ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC--------------CCHHH----HHHHHHHHCCCCCCC--CEEEE
Q ss_conf 98887540799984899289999960000588332--------------59899----999998634136899--88999
Q gi|254780659|r 92 PPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL--------------DDPFR----TADKILATCPLKEQA--DVIVF 151 (274)
Q Consensus 92 p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~--------------d~PF~----~~d~~l~~~~~~~~~--~~i~V 151 (274)
..|.||.++... -.|+ --|-|++|.- ---|+ .+|++++.++.+++. +-|++
T Consensus 106 ---~~g~GYIivk~D--~MIG----ARREFLDP~EMa~fNaD~~kVLa~tG~~RlvQ~eiD~vi~~v~~Gk~~~LPkiv~ 176 (276)
T pfam01993 106 ---EQGLGYILVKAD--PMIG----ARREFLDPTEMALFNADVIKVLAATGAFRVVQEAIDKMIEDVKAGKEPELPQIVI 176 (276)
T ss_pred ---HCCCCEEEEECC--CCCC----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf ---659847998367--6443----1232038799987402599999863189999999999999986589777873887
Q ss_pred E
Q ss_conf 6
Q gi|254780659|r 152 D 152 (274)
Q Consensus 152 D 152 (274)
+
T Consensus 177 t 177 (276)
T pfam01993 177 D 177 (276)
T ss_pred C
T ss_conf 4
No 50
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=73.74 E-value=8 Score=19.71 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=44.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 26999720276889999998089888609989999170047886789999999983799899934265
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHV 69 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~ 69 (274)
||.+||||=|. .+.+++.|.++.-.-..|.+|.=|.-.--|-- +.+..+-|..-.+ +.-.|||=
T Consensus 16 ~iyvVGDIHGc--~~~L~~lL~~i~~~p~~D~Lv~lGDlIDRGpd-S~~Vl~ll~~~~~-~~v~GNHE 79 (218)
T PRK09968 16 HIWVVGDIHGC--YQLLQSRLHQLSFCPETDLLISVGDNIDRGPE-SLNVLRLLNQPWF-ISVKGNHE 79 (218)
T ss_pred EEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEEECCEECCCCC-CHHHHHHHHCCCC-EEECCHHH
T ss_conf 07999647679--89999999964788456889980664257888-2999999844798-79727479
No 51
>pfam01522 Polysacc_deac_1 Polysaccharide deacetylase. This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan.
Probab=73.69 E-value=8 Score=19.71 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHCCCCEE-EECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf 99999980898886099899-991700478867899999999837998999342653022204
Q gi|254780659|r 15 RSIVYEMLPRLIRDFQLDFV-IANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREAL 76 (274)
Q Consensus 15 r~~v~~~Lp~l~~~~~~Dfv-IaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~ 76 (274)
+....+.||-|++ |++-++ -+++.+. +-.++..+++.+.| ...|||+|++..+.
T Consensus 17 ~~~~~~~l~~L~~-~~i~aTfFv~~~~i----~~~~~~~~~l~~~G---~eig~Ht~~H~~~~ 71 (123)
T pfam01522 17 PDNTPRILDVLKK-YGVPATFFVIGGNA----ETYPELVRRMVAEG---HEIGNHTYSHPDLT 71 (123)
T ss_pred HHHHHHHHHHHHH-CCCCEEEEECCCCC----CCCHHHHHHHHHCC---CEEEECCCCCHHHH
T ss_conf 3519999999998-29986997247645----36899999999879---98742104564155
No 52
>PRK00830 consensus
Probab=73.23 E-value=7.4 Score=19.93 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=61.2
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+.|. .|+....+.+.++.++-.+-+.+ |-|| +.+.+++++++|+|-+..|..+..+++++.-+-
T Consensus 50 elhivDld~a~~g~~~~~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~ll~~GadkVvIgS~a~~np~~v~~~~ 121 (273)
T PRK00830 50 ELVFLDITASHEGRATMIDVIERTAEEVFIPLTV--------GGGIRSIEDIRQILRAGADKVSVNTAAVKNPEFIREAS 121 (273)
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCEEECCCHHHHHHCCCCEEECHHHHHHCCHHHHHHH
T ss_conf 8999953246468842799999999866995896--------08843773289999769863983798985907789999
Q ss_pred H-C--CCEEEECCC
Q ss_conf 1-8--938975007
Q gi|254780659|r 81 R-H--CKFLRPANY 91 (274)
Q Consensus 81 ~-~--~~ilRP~N~ 91 (274)
+ . ..|+--+.+
T Consensus 122 ~~fGsq~IvvsiD~ 135 (273)
T PRK00830 122 DIFGSQCIVVAIDC 135 (273)
T ss_pred HHCCCCEEEEEEEE
T ss_conf 87699059999984
No 53
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=71.29 E-value=4.1 Score=21.57 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH---HHHHHHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf 3259899999998634136899889996257622---8999999760895779980697624654
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETT---SEKQCFAHFVDSRASLVVGTHTHIPTAD 186 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT---SEK~A~g~~lDGrVsaVvGTHTHV~TaD 186 (274)
.+++|.+.++.+.+. .++.| -||+|+| .+-...-.-+.=++..++--+|.+..-+
T Consensus 69 MV~~p~~~i~~fa~a-----gad~I--t~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~ 126 (220)
T COG0036 69 MVENPDRYIEAFAKA-----GADII--TFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALE 126 (220)
T ss_pred ECCCHHHHHHHHHHH-----CCCEE--EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 328989999999981-----99989--99712776899999999975985779978999778999
No 54
>PRK05211 consensus
Probab=70.79 E-value=9.3 Score=19.28 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=61.1
Q ss_pred EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-| +.|+..-.+.+.++.++-.+-+.+ |-|| +.+.+++|+++|+|-+..|..++.+++++.-+-
T Consensus 37 elhivDld~a~~g~~~n~~~I~~i~~~~~~Pl~v--------GGGIrs~~~i~~ll~~GadkViigs~a~~np~li~~~~ 108 (248)
T PRK05211 37 ELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCV--------AGGIKSVEDAREILSFGADKISINSPALADPTLITRLA 108 (248)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHH
T ss_conf 8999978677678721499999999767985896--------27801389999999879988998976761961899999
Q ss_pred H-CC--CEEEECC
Q ss_conf 1-89--3897500
Q gi|254780659|r 81 R-HC--KFLRPAN 90 (274)
Q Consensus 81 ~-~~--~ilRP~N 90 (274)
+ .. .|+--++
T Consensus 109 ~~fG~q~IvvsiD 121 (248)
T PRK05211 109 DRFGVQCIVVGID 121 (248)
T ss_pred HHCCCCEEEEEEE
T ss_conf 8579936999997
No 55
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=70.54 E-value=9.5 Score=19.24 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCC
Q ss_conf 889999998089888609989999170047886789999999983-7998999342653022204754218938975007
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGIDVITTGNHVWDKREALVFSQRHCKFLRPANY 91 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~ 91 (274)
-+-..+....+..-+++++||||.-+-|+|. ..|+-+.|+++ +++-+|--|+-- .++..+-+++
T Consensus 43 M~Pe~veaav~~~~e~~~pDfvi~isPNpaa---PGP~kARE~l~~s~~PaiiigDaP--g~~vkdelee---------- 107 (277)
T COG1927 43 MDPECVEAAVTEMLEEFNPDFVIYISPNPAA---PGPKKAREILSDSDVPAIIIGDAP--GLKVKDELEE---------- 107 (277)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHH----------
T ss_conf 5868888877999985189889995799899---994689998743599779966886--3136789986----------
Q ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC--------------CCHH----HHHHHHHHHCCCCCCCC--EEEE
Q ss_conf 98887540799984899289999960000588332--------------5989----99999986341368998--8999
Q gi|254780659|r 92 PPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL--------------DDPF----RTADKILATCPLKEQAD--VIVF 151 (274)
Q Consensus 92 p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~--------------d~PF----~~~d~~l~~~~~~~~~~--~i~V 151 (274)
.|.||.++.. + -.|+ .-|-|++|.- --.| .++|++++..+.+++.+ -|++
T Consensus 108 ----qGlGYIivk~-D-pmiG----ArREFLDPvEMA~fNaDv~kVLa~tGa~R~vQeaiD~~ie~vk~gk~~eLP~ivi 177 (277)
T COG1927 108 ----QGLGYIIVKA-D-PMIG----ARREFLDPVEMASFNADVMKVLAATGAFRLVQEAIDKVIEDVKEGKEPELPKIVI 177 (277)
T ss_pred ----CCCEEEEECC-C-CCCC----HHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf ----5870799627-7-5443----2343048898875006899999840079999999999999985578767872675
Q ss_pred E
Q ss_conf 6
Q gi|254780659|r 152 D 152 (274)
Q Consensus 152 D 152 (274)
|
T Consensus 178 ~ 178 (277)
T COG1927 178 D 178 (277)
T ss_pred C
T ss_conf 4
No 56
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=69.57 E-value=5.6 Score=20.73 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHCCCCEEEECHH----HHCCCCHHHHHHH---CCCEEEECCCCCCCCCCCE
Q ss_conf 78999999998379989993426----5302220475421---8938975007988875407
Q gi|254780659|r 46 GITEKIFCEMMETGIDVITTGNH----VWDKREALVFSQR---HCKFLRPANYPPNTPGNGS 100 (274)
Q Consensus 46 Git~~~~~~l~~~GvDviT~GNH----~wd~kei~~~i~~---~~~ilRP~N~p~~~PG~G~ 100 (274)
=++.+..+.+.++|.|.|--|-- +.| +.+..+.+ -|-+|-|-|-..-+|+.-+
T Consensus 19 ~~~~~~~~~~~~sgtDaI~VGGS~~~~~~d--~~v~~ik~~~~lPviLfPg~~~~vs~~aDa 78 (231)
T pfam01884 19 TNPEEIIEIVAESGTDAIMIGGSTGGVTLD--NVVRLIKKVYGLPIILFPGNPSGVSRYADA 78 (231)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCHH--HHHHHHHHHCCCCEEEECCCHHHCCCCCCE
T ss_conf 996999999997499999988988885689--999999985399989956986765867784
No 57
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=69.07 E-value=10 Score=19.04 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 999998089888609989999170047886789999999983799899
Q gi|254780659|r 16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI 63 (274)
Q Consensus 16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi 63 (274)
..+.+.+.++|+++.-..+|| |.=-|++.+++|.++|+|+|
T Consensus 136 ~~~~~~i~~ik~~~~~~~iia-------GNvaT~e~~~~L~~~GaD~v 176 (347)
T PRK05096 136 EHFVQFVAKAREAWPDKTICA-------GNVVTGEMVEELILSGADIV 176 (347)
T ss_pred HHHHHHHHHHHHHCCCCEEEC-------CCHHHHHHHHHHHHCCCCEE
T ss_conf 889999999998789980881-------43123999999997378899
No 58
>PRK01659 consensus
Probab=68.95 E-value=10 Score=19.03 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=59.3
Q ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf 999720276-88999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r 4 LFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274)
Q Consensus 4 LfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274)
|.+=|+-|. .|+....+.+.++.++..+-+.+ |-|| +.+.+++++++|+|-+..|..++.+++++.-+-+
T Consensus 47 ihivDld~a~~g~~~n~~~I~~i~~~~~ipi~v--------GGGIrs~e~~~~~l~~GadkViigs~a~~n~~~i~~~~~ 118 (252)
T PRK01659 47 LVFLDITATHEGRKTMVDVVEKVAAKVFIPLTV--------GGGISSVKDMKRLLRAGADKVSINSAAVLRPELITEGAD 118 (252)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEECHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHH
T ss_conf 999946766568864899999999756974799--------633200688889874488559831777529153214676
Q ss_pred -C--CCEEEECCC
Q ss_conf -8--938975007
Q gi|254780659|r 82 -H--CKFLRPANY 91 (274)
Q Consensus 82 -~--~~ilRP~N~ 91 (274)
. .+|+--+.+
T Consensus 119 ~~G~q~IvvsiD~ 131 (252)
T PRK01659 119 HFGSQCIVVAIDA 131 (252)
T ss_pred HCCCEEEEEEEEE
T ss_conf 4686326999998
No 59
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=68.77 E-value=10 Score=19.00 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCH---HHHHHHHHCCCC---EEEECHHH
Q ss_conf 899999980898886099899991700478867899---999999837998---99934265
Q gi|254780659|r 14 GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITE---KIFCEMMETGID---VITTGNHV 69 (274)
Q Consensus 14 Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~---~~~~~l~~~GvD---viT~GNH~ 69 (274)
=++.+.+.|.++.++|+++-+|.||.+-....+..+ .-..+|+++=-+ .+.-|||-
T Consensus 47 ~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~evi~i~GNHD 108 (235)
T COG1407 47 QTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDEREVIIIRGNHD 108 (235)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 58999999999998609877999075344367544232899999999741386899956677
No 60
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.56 E-value=10 Score=18.98 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 67899999999837998999342
Q gi|254780659|r 45 FGITEKIFCEMMETGIDVITTGN 67 (274)
Q Consensus 45 ~Git~~~~~~l~~~GvDviT~GN 67 (274)
.--|.+..+.|-+.|+|+|-.|=
T Consensus 28 ~e~s~~~~~~l~~~GaDiiElGi 50 (263)
T CHL00200 28 IVITKKALKILDKKGADIIELGI 50 (263)
T ss_pred HHHHHHHHHHHHHCCCCEEEECC
T ss_conf 78999999999976999999789
No 61
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=68.17 E-value=11 Score=18.93 Aligned_cols=112 Identities=22% Similarity=0.338 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 89999998089888609989999170047886789999999983-79989993426530222047542189389750079
Q gi|254780659|r 14 GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP 92 (274)
Q Consensus 14 Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p 92 (274)
+..-+.+.++++ ++|++||+|+-+-|++- -.|+-++|+++ +|+-+|--|+-.--+++ +-++
T Consensus 44 ~pe~~~~v~~~~-~~~~pDf~i~isPN~a~---PGP~~ARE~l~~~~iP~IvI~D~p~~k~k--d~l~------------ 105 (276)
T PRK00994 44 GPEEVERVVKKM-KEWKPDFIIVISPNPAA---PGPTKAREILSAAGIPCIVIGDAPGKKKK--DAME------------ 105 (276)
T ss_pred CHHHHHHHHHHH-HHHCCCEEEEECCCCCC---CCCHHHHHHHHHCCCCEEEECCCCCHHHH--HHHH------------
T ss_conf 978999999998-84089989997899889---99567999997569988997488533148--8998------------
Q ss_pred CCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC--------------CCHHH----HHHHHHHHCCCCCCC--CEEEE
Q ss_conf 8887540799984899289999960000588332--------------59899----999998634136899--88999
Q gi|254780659|r 93 PNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL--------------DDPFR----TADKILATCPLKEQA--DVIVF 151 (274)
Q Consensus 93 ~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~--------------d~PF~----~~d~~l~~~~~~~~~--~~i~V 151 (274)
..|.||.++... -.|+ --|-|++|.- ---|+ .+|++++.++.+++. +-|++
T Consensus 106 --~~g~GYIivk~D--~MIG----ARREFLDP~EMa~fNaD~~kVLa~tG~~RlvQ~elD~vi~~v~~Gke~~LPkiv~ 176 (276)
T PRK00994 106 --EQGFGYIIVKAD--PMIG----ARREFLDPVEMASFNADVIKVLAGTGAFRLVQEALDKVIDQVKAGKEIELPKIVI 176 (276)
T ss_pred --HCCCCEEEEECC--CCCC----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf --649847998367--5443----1232038799987402699999852089999999999999986689877873787
No 62
>PRK13129 consensus
Probab=64.77 E-value=12 Score=18.50 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHCCCCEEEECCEECCCC---CCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 9999808988860998999917004788---67899999999837998999342
Q gi|254780659|r 17 IVYEMLPRLIRDFQLDFVIANGENSAGG---FGITEKIFCEMMETGIDVITTGN 67 (274)
Q Consensus 17 ~v~~~Lp~l~~~~~~DfvIaNgENaa~G---~Git~~~~~~l~~~GvDviT~GN 67 (274)
-+++...++|++-+.-|+- -.+.| .-.|.+..+.|-+.|+|+|-.|=
T Consensus 5 ri~~~F~~~k~~~~~ali~----yitaG~P~~e~s~~~~~~l~~~GaDiiEiGi 54 (267)
T PRK13129 5 AISECFEQLKKEGRCALMP----FLMAGDPDLETTAEALLILQENGADLIELGI 54 (267)
T ss_pred HHHHHHHHHHHCCCCEEEE----EEECCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999769955898----8707189989999999999977999999799
No 63
>PRK06256 biotin synthase; Validated
Probab=64.58 E-value=12 Score=18.60 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 999998089888609989999170047886789999999983799899
Q gi|254780659|r 16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI 63 (274)
Q Consensus 16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi 63 (274)
+.+.+.+..+|+++.+... ++-|. ++++.+++|+++|+|-+
T Consensus 125 e~v~~~i~~Ik~~~~l~i~------~slG~-l~~e~~~~LkeAGvd~y 165 (325)
T PRK06256 125 DQVIEAVKAIKEETDLEIC------ACLGL-LTEEQAERLKEAGVDRY 165 (325)
T ss_pred HHHHHHHHHHHHCCCEEEE------EECCC-CCHHHHHHHHHCCCCEE
T ss_conf 9999999998622893688------73488-99999999998699888
No 64
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=63.40 E-value=5.5 Score=20.75 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=7.9
Q ss_pred HHHCC-CCEEEECHHHHCCCCHH
Q ss_conf 98379-98999342653022204
Q gi|254780659|r 55 MMETG-IDVITTGNHVWDKREAL 76 (274)
Q Consensus 55 l~~~G-vDviT~GNH~wd~kei~ 76 (274)
.++.| |.++-+-....|..++.
T Consensus 35 aL~~g~Va~vqlR~k~~d~~~~~ 57 (221)
T PRK06512 35 ALSGGDVASVILPDYGLDEATFQ 57 (221)
T ss_pred HHCCCCEEEEEEECCCCCHHHHH
T ss_conf 98469855999757999999999
No 65
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=63.34 E-value=13 Score=18.33 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 998089888609989999170047886789999999983799899
Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI 63 (274)
Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi 63 (274)
...+.++.+++++|.|.++. ..+++......+...++-++
T Consensus 85 ~~~~~~~~~~~~pDivh~h~-----~~~~~~~~~~~~~~~~~p~v 124 (359)
T cd03823 85 VAEFARLLEDFRPDVVHFHH-----LQGLGVSILRAARDRGIPIV 124 (359)
T ss_pred HHHHHHHHHHCCCCEEEECC-----CHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999874999999888-----31767999999998499899
No 66
>PHA02239 putative protein phosphatase
Probab=62.80 E-value=13 Score=18.27 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=46.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CEEEECCEECCCCCCCCHHHHHHHHH---CCCCEE-EECHHHHCCCCH
Q ss_conf 9269997202768899999980898886099-89999170047886789999999983---799899-934265302220
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQL-DFVIANGENSAGGFGITEKIFCEMME---TGIDVI-TTGNHVWDKREA 75 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~-DfvIaNgENaa~G~Git~~~~~~l~~---~GvDvi-T~GNH~wd~kei 75 (274)
|||..||||=|+ .+.+.+.|.++..+.++ |.+|-=|.-.--|-- ++...+.|++ .+-+++ -.|||= .-+
T Consensus 1 m~IYaigDIHG~--~d~l~~ll~~i~~~~~~~~~lv~lGDyiDRGp~-S~~vi~~l~~l~~~~~~~~~L~GNHE---~ml 74 (235)
T PHA02239 1 MAIYVVPDIHGE--YQKLLTIMDKINNERKPEETIVFLGDYVDRGKR-SKDVVNYIFDLMSNDDNVVTLLGNHD---DEF 74 (235)
T ss_pred CCEEEEEECCCC--HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCHH---HHH
T ss_conf 965898624789--999999999987437977669995331068956-29999999987536997499107289---999
Q ss_pred HHHHHHCC
Q ss_conf 47542189
Q gi|254780659|r 76 LVFSQRHC 83 (274)
Q Consensus 76 ~~~i~~~~ 83 (274)
+.++++.+
T Consensus 75 L~~L~~~~ 82 (235)
T PHA02239 75 YNIMENVD 82 (235)
T ss_pred HHHHHCCC
T ss_conf 99884832
No 67
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=61.33 E-value=7.7 Score=19.84 Aligned_cols=44 Identities=34% Similarity=0.479 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 999980898886099899991700478867899999999837998999342
Q gi|254780659|r 17 IVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN 67 (274)
Q Consensus 17 ~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN 67 (274)
-+++.+..|+.+.. .+++ | |+ | |||.+...++-..|||+|.+|=
T Consensus 219 ~~~~av~~~~~~~p-~~~~---E-aS-G-Gitl~n~~~ya~~gVD~IS~G~ 262 (276)
T TIGR00078 219 EIKEAVELLKGRNP-NVLV---E-AS-G-GITLDNIEEYAETGVDVISSGA 262 (276)
T ss_pred HHHHHHHHHHHCCC-EEEE---E-EE-C-CCCHHHHHHHHHCCCCEEECCC
T ss_conf 99999999970299-0899---9-83-6-9987899998408975883274
No 68
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=60.37 E-value=15 Score=17.99 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHCCCCHHHH-HHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCC
Q ss_conf 89999999983799899934265302220475-42189389750079888754079998489928999996000058833
Q gi|254780659|r 47 ITEKIFCEMMETGIDVITTGNHVWDKREALVF-SQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPL 125 (274)
Q Consensus 47 it~~~~~~l~~~GvDviT~GNH~wd~kei~~~-i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~ 125 (274)
|....+..|...|-.+...|-..|....-... ++-..... -| +. ......--+.|
T Consensus 14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~--~~--------~~--~~~~~~aDlVi------------ 69 (279)
T COG0287 14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELT--VA--------GL--AEAAAEADLVI------------ 69 (279)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHC--CC--------HH--HHHCCCCCEEE------------
T ss_conf 77999999997698479972477467787766358530100--11--------55--54135699899------------
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC-CHHHHCCCCEEEEECCCCCC
Q ss_conf 25989999999863413689988999625762289999997608957799806976246-54564036728984056013
Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPT-ADAQILDGGTGYITDLGMCG 204 (274)
Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~T-aD~rILp~GTayiTDvGMtG 204 (274)
+--|.....++++++.-.-..+.++.|+-..-++...||--++.+.+ .++|+|-=--| ++.-.+.+..-.+|+...+.
T Consensus 70 vavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~ 148 (279)
T COG0287 70 VAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE 148 (279)
T ss_pred EECCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-EEEECCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 95778899999998630379998897364201789999997466777-07821899987431123379679994799987
No 69
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=59.67 E-value=15 Score=17.92 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=56.9
Q ss_pred EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-+ ..|+..-...+.++.++..+-+.+ |-|| +.+.+++++++|+|-+..|.-++.+.+.+.-+-
T Consensus 45 ~l~i~DLdaa~~~~~~n~~~I~~I~~~~~~pi~v--------GGGIrs~~~~~~l~~~Ga~kvvi~s~~~~~~~~~~~~~ 116 (234)
T cd04732 45 WLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQV--------GGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELL 116 (234)
T ss_pred EEEEEECCCHHHCCCCHHHHHHHHHHHCCCCEEE--------CCCCCCHHHHHHHHHCCCCEEEECCCHHHCHHHHHHHH
T ss_conf 8999967530308911599999999767956897--------37717599999998648871897140110827899999
Q ss_pred H-C--CCEEEECCC
Q ss_conf 1-8--938975007
Q gi|254780659|r 81 R-H--CKFLRPANY 91 (274)
Q Consensus 81 ~-~--~~ilRP~N~ 91 (274)
+ . .+++=-+.+
T Consensus 117 ~~~G~q~iv~slD~ 130 (234)
T cd04732 117 KEYGGERIVVGLDA 130 (234)
T ss_pred HHCCCCCEEEEEEE
T ss_conf 98297646999997
No 70
>TIGR00040 yfcE phosphodiesterase, MJ0936 family; InterPro: IPR000979 Members of this largely uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterised archaeal putative phosphoesterases. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown to act on model phosphodiesterase substrates; a divalent cation was required. The following uncharacterised proteins are members of the fsmily: Escherichia coli hypothetical protein yfcE; Bacillus subtilis hypothetical protein ysnB; Mycoplasma genitalium and Mycoplasma pneumoniae hypothetical protein MG207; and M. jannaschii hypothetical proteins MJ0623 and MJ0936. .
Probab=59.04 E-value=16 Score=17.85 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=51.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCC-CEEEECHH
Q ss_conf 926999720276889999998089888609989999170047886789999999983799-89993426
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI-DVITTGNH 68 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~Gv-DviT~GNH 68 (274)
||||++.|.=+. -+|++....-+.++.++|+||-=|--.-+ --++++++++-+... =.+.-||+
T Consensus 1 m~il~~SDtH~~--~~A~e~~~~~~~~~~~~D~viH~GD~~N~--~~s~~~l~~~~~~~~~~~aV~GN~ 65 (170)
T TIGR00040 1 MLILVISDTHIP--LRATELPVEAFDKESNVDLVIHAGDLTNS--YKSPFVLKEFEDLAAKVIAVRGNN 65 (170)
T ss_pred CEEEEEEECCCC--CCCCHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 958999620897--53315799999875188799992143235--578789998863138589996789
No 71
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=58.19 E-value=16 Score=17.76 Aligned_cols=132 Identities=23% Similarity=0.294 Sum_probs=74.5
Q ss_pred CEEEEEEEC------CCHHHHHH--------------HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHH-----
Q ss_conf 926999720------27688999--------------99980898886099899991700478867899999999-----
Q gi|254780659|r 1 MRLLFLGDI------VGKTGRSI--------------VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEM----- 55 (274)
Q Consensus 1 MkiLfiGDI------vG~~Gr~~--------------v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l----- 55 (274)
|+|.|.=|| +||.|-+- --+....||+++ .+||-+--=|+--|.|.+-....++
T Consensus 1 m~vi~viDik~g~vV~gKsg~re~Y~Pis~~~~~s~dP~eia~~lr~rg-ar~vYiADLdaI~g~g~n~d~i~~l~~~~~ 79 (229)
T COG1411 1 MKVIFVIDIKDGKVVVGKSGEREEYRPISSRYCLSDDPLEIAEALRERG-ARFVYIADLDAILGGGDNADTIRELSSLEK 79 (229)
T ss_pred CCEEEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCC-CCEEEEEEHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9528999804683786468874444673103359998699999976544-746886103788668974899999876543
Q ss_pred --HHCCCCEEEECHHHHCC-------CCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC
Q ss_conf --83799899934265302-------220475421893897500798887540799984899289999960000588332
Q gi|254780659|r 56 --METGIDVITTGNHVWDK-------REALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL 126 (274)
Q Consensus 56 --~~~GvDviT~GNH~wd~-------kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~ 126 (274)
.++|+-.+-+=.|.-.. .|.++.++... -|+-+.....+++ +| .++.+
T Consensus 80 ~ivD~Gv~dL~s~~~~l~~~~~~vv~TEt~e~~e~~e------------~~r~vvslD~k~~------~L-----l~~~~ 136 (229)
T COG1411 80 VIVDVGVRDLESHAHRLIPAETAVVGTETLEDTEEDE------------EGRIVVSLDVKGG------EL-----LGPWL 136 (229)
T ss_pred HEEECCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHH------------CCCEEEEEECCCC------EE-----CCCCC
T ss_conf 5001133336478886077764353112033556633------------0666999964788------42-----37771
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf 5989999999863413689988999625762289
Q gi|254780659|r 127 DDPFRTADKILATCPLKEQADVIVFDFHAETTSE 160 (274)
Q Consensus 127 d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE 160 (274)
+++|.++..+... .+.+.|++|.||=-|++
T Consensus 137 ed~le~Vk~l~~~----~~~~lIvLDi~aVGt~~ 166 (229)
T COG1411 137 EDFLETVKDLNYR----RDPGLIVLDIGAVGTKS 166 (229)
T ss_pred HHHHHHHHHHHCC----CCCCEEEEECCCCCCCC
T ss_conf 0489999987525----78884999755433466
No 72
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=58.00 E-value=16 Score=17.74 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=52.1
Q ss_pred CHHHHHHHHH-----------HHHHHHHHCCCCEEEECCEEC-CC------------CCCCCHHHH---------HHHH-
Q ss_conf 7688999999-----------808988860998999917004-78------------867899999---------9998-
Q gi|254780659|r 11 GKTGRSIVYE-----------MLPRLIRDFQLDFVIANGENS-AG------------GFGITEKIF---------CEMM- 56 (274)
Q Consensus 11 G~~Gr~~v~~-----------~Lp~l~~~~~~DfvIaNgENa-a~------------G~Git~~~~---------~~l~- 56 (274)
|.+|..-+.+ .|-.+-+++++|+||+--|.- +. =||.|++.| ++|+
T Consensus 33 GN~g~~~~a~~~~~i~~~d~~~i~~~a~~~~iDLvvvGPE~PL~~GivD~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~ 112 (415)
T PRK13790 33 GNEAMTPIAEVHTEISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIME 112 (415)
T ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHH
T ss_conf 95576522302467685589999999998199999989607866348888643897598949799515126999999999
Q ss_pred HCCCCEEEECHHHH-CCCCHHHHHHHCC--CEEEECCCCCCCCCCCEE
Q ss_conf 37998999342653-0222047542189--389750079888754079
Q gi|254780659|r 57 ETGIDVITTGNHVW-DKREALVFSQRHC--KFLRPANYPPNTPGNGSG 101 (274)
Q Consensus 57 ~~GvDviT~GNH~w-d~kei~~~i~~~~--~ilRP~N~p~~~PG~G~~ 101 (274)
++||- |.--.+| |..|...|+++.+ -+|++--. +.|+|..
T Consensus 113 ~~~IP--Ta~~~~f~~~~~A~~~l~~~~~p~VIKaDGL---AaGKGV~ 155 (415)
T PRK13790 113 KYNIP--TADYKEVERKKDALTYIENCELPVVVKKDGL---AAGKGVI 155 (415)
T ss_pred HCCCC--CCCEEEECCHHHHHHHHHHCCCCEEEECCCC---CCCCCEE
T ss_conf 82979--7772550879999999861799889966866---7899569
No 73
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=57.32 E-value=17 Score=17.66 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=6.6
Q ss_pred CCCCHHHHHHHHHCCC
Q ss_conf 6789999999983799
Q gi|254780659|r 45 FGITEKIFCEMMETGI 60 (274)
Q Consensus 45 ~Git~~~~~~l~~~Gv 60 (274)
..++.+..++-.++|.
T Consensus 130 r~~~~~li~RA~~aG~ 145 (344)
T cd02922 130 RTKTEELLKRAEKLGA 145 (344)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 7999999999998699
No 74
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=57.04 E-value=9.3 Score=19.29 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=19.9
Q ss_pred CCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 8678-9999999983799899934265302220
Q gi|254780659|r 44 GFGI-TEKIFCEMMETGIDVITTGNHVWDKREA 75 (274)
Q Consensus 44 G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei 75 (274)
|=|| |++.|++|..+|+|+|-+||=++++..+
T Consensus 201 GGGIRs~E~A~~~a~AgAD~~VtGnvie~~~nv 233 (242)
T TIGR01768 201 GGGIRSVEKARKLAEAGADVVVTGNVIEEDDNV 233 (242)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEEEEEEECCHHH
T ss_conf 076478899999953459899984687516378
No 75
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107 This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms . Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium and Gram-positive bacterium . A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=56.85 E-value=11 Score=18.70 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=35.9
Q ss_pred CCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCC-CCCEEEEECCCCCHH
Q ss_conf 99289999960000588332598999999986341368-998899962576228
Q gi|254780659|r 107 NGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKE-QADVIVFDFHAETTS 159 (274)
Q Consensus 107 ~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~-~~~~i~VDfHaEaTS 159 (274)
+...|+|+-++|-+|=.. +|++ +.+..+|+++..+. +-.-+=|++|.-|-|
T Consensus 200 DENTIGV~~ILG~TyTG~-yE~v-~~lnD~L~~~~~~~PDWsg~d~PiHvDAAS 251 (493)
T TIGR01788 200 DENTIGVVAILGTTYTGE-YEDV-KALNDLLEELNAKTPDWSGWDIPIHVDAAS 251 (493)
T ss_pred CCCCCEEEEECCCCCCCC-CCCH-HHHHHHHHHHHCCCCCCCCCCCCEEEECCC
T ss_conf 767524888747232587-0888-999999999742788747787664774467
No 76
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=56.70 E-value=14 Score=18.19 Aligned_cols=65 Identities=29% Similarity=0.406 Sum_probs=47.5
Q ss_pred EEEEEEECCCH---------HHHHHHHHHHHHHH--HHCCCCE----EEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 26999720276---------88999999808988--8609989----999170047886789999999983799899934
Q gi|254780659|r 2 RLLFLGDIVGK---------TGRSIVYEMLPRLI--RDFQLDF----VIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274)
Q Consensus 2 kiLfiGDIvG~---------~Gr~~v~~~Lp~l~--~~~~~Df----vIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274)
.|--+|||+|+ +||+ |.+.|=.-+ +..++|+ .|+=.-=..+--|||.+.| |.++|.|=|=.=
T Consensus 320 gIYAlGDV~Gk~~LTPVAIaAGR~-LS~RLF~~~kf~~~kLDY~~vPtVvFsHP~iGtvGLtE~~A--i~~YG~e~vKvY 396 (475)
T TIGR01421 320 GIYALGDVVGKVELTPVAIAAGRK-LSERLFNGKKFTDAKLDYNNVPTVVFSHPPIGTVGLTEKEA--IEKYGKENVKVY 396 (475)
T ss_pred CEEEECCEEECCCCCHHHHHHHHH-HHHHCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCHHHH--HHHCCCCCEEEE
T ss_conf 858722268110077378773036-78763687300013465024880387377843003787899--986087544374
Q ss_pred HHH
Q ss_conf 265
Q gi|254780659|r 67 NHV 69 (274)
Q Consensus 67 NH~ 69 (274)
+=.
T Consensus 397 ~ss 399 (475)
T TIGR01421 397 KSS 399 (475)
T ss_pred ECC
T ss_conf 046
No 77
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=56.04 E-value=4 Score=21.67 Aligned_cols=14 Identities=0% Similarity=0.022 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 59899999998634
Q gi|254780659|r 127 DDPFRTADKILATC 140 (274)
Q Consensus 127 d~PF~~~d~~l~~~ 140 (274)
.+-|+.+.+.+++.
T Consensus 93 s~i~k~~~~~i~~~ 106 (289)
T PRK13426 93 ANIIKMLLQTIGEY 106 (289)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999999
No 78
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=54.37 E-value=15 Score=18.00 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=5.7
Q ss_pred HHHHHHHH-HCCCCEE
Q ss_conf 99999998-3799899
Q gi|254780659|r 49 EKIFCEMM-ETGIDVI 63 (274)
Q Consensus 49 ~~~~~~l~-~~GvDvi 63 (274)
..+.++|. +.++.++
T Consensus 41 ~vLl~~l~~~~~~~vl 56 (218)
T pfam01935 41 AVLLEELLEKKGATVL 56 (218)
T ss_pred HHHHHHHHHCCCCCEE
T ss_conf 9999999854799789
No 79
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.25 E-value=19 Score=17.34 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=73.7
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+..-.+.+.++.++..+-+-+ |-|| +.+.+++++++|+|-+..|--+.+. +.+.-+-
T Consensus 45 ~lhivDLd~a~~g~~~n~~~I~~i~~~~~~piqv--------GGGIrs~e~i~~~l~~Ga~kViigt~a~~~-~~l~~~~ 115 (228)
T PRK04128 45 KIHVVDLDGAFEGKPKNLDVVKNIIEETGLKVQV--------GGGFRTYESIKDAYEIGVENVIIGTKAFDI-EFLEKIT 115 (228)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEE--------CCCCCCHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHH
T ss_conf 8999988030149832699999998654962897--------386077999999996899769814512580-8999999
Q ss_pred HCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf 18938975007988875407999848992899999600005883325989999999863413689988999625762289
Q gi|254780659|r 81 RHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE 160 (274)
Q Consensus 81 ~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE 160 (274)
+ +|+. =...++.++| +++ .+-+....--.|...++ .+++. -..+++-|...+-|..
T Consensus 116 ~--------~~~~-----ivvslD~k~~-~v~-----~~gw~~~~~~~~~~~~~-~~~~~----~~~ii~tdI~~dGt~~ 171 (228)
T PRK04128 116 S--------EFNG-----ITVSLDVKGG-RIA-----TKGWLEESSIKVEDAYK-MLRNY----VNRFIYTSIERDGTLT 171 (228)
T ss_pred H--------HCCC-----CCEEEECCCC-EEE-----CCCCEECCCCCHHHHHH-HHHHH----CCCEEEEEECCCCCCC
T ss_conf 7--------2647-----6368871378-685-----26848889988999999-99863----8453763126543003
No 80
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=52.90 E-value=6.1 Score=20.50 Aligned_cols=14 Identities=0% Similarity=0.116 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 59899999998634
Q gi|254780659|r 127 DDPFRTADKILATC 140 (274)
Q Consensus 127 d~PF~~~d~~l~~~ 140 (274)
.+-++.+...+++.
T Consensus 93 s~i~k~~~~~~~~~ 106 (287)
T PRK05621 93 SNIIKKVLELIKEL 106 (287)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
No 81
>PRK07695 transcriptional regulator TenI; Provisional
Probab=52.54 E-value=7.9 Score=19.76 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=69.2
Q ss_pred HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCH
Q ss_conf 99999983799899934265302220475421893897500798887540799984899289999960000588332598
Q gi|254780659|r 50 KIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDP 129 (274)
Q Consensus 50 ~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~P 129 (274)
...++.++.|||+|-.=.-..+.+|++...+.- +.+..+ .. ..+++. ...++..-=...+.+. .-|.|
T Consensus 18 ~~v~~al~~Gv~~iQlR~K~~s~~e~~~~~~~l----~~~~~~----~~-~lIIND--~~dlA~~~~adGVHLG-q~D~~ 85 (202)
T PRK07695 18 VAVAMQIESEVDYIHIREREKSAKELYEGVESL----LKKGVP----AS-KLIIND--RVDIALLLNIHRVQLG-YRSFD 85 (202)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH----HHHCCC----CC-EEEEEC--CHHHHHHCCCCEEEEC-HHHCC
T ss_conf 999999987999999889997999999999999----984899----99-899979--1999988499989218-21219
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC----EEEEEECCCCCCCCHHHHCCCCEEEEECCCC-C-
Q ss_conf 999999986341368998899962576228999999760895----7799806976246545640367289840560-1-
Q gi|254780659|r 130 FRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSR----ASLVVGTHTHIPTADAQILDGGTGYITDLGM-C- 203 (274)
Q Consensus 130 F~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGr----VsaVvGTHTHV~TaD~rILp~GTayiTDvGM-t- 203 (274)
...+.+.+... .|=+--|. -.| +.--.-.|- ++.++-|-||- ... |-|...+..+-- +
T Consensus 86 ~~~~R~~~~~~-------~IG~S~h~--~~e--~~~a~~~gaDYi~~Gpif~T~tK~-~~~----~~G~~~l~~~~~~~~ 149 (202)
T PRK07695 86 VKSVREKFPYL-------HVGYSVHS--LEE--AIQAEKNGADYVVYGHVFPTDCKK-GVP----ARGLEELSEIARALS 149 (202)
T ss_pred HHHHHHHCCCC-------EEEEECCC--HHH--HHHHHHCCCCEEEECCCCCCCCCC-CCC----CCCHHHHHHHHHHCC
T ss_conf 99999877998-------99995799--999--999977699969972541268888-988----789999999998679
Q ss_pred CCHHHCCCCCHHHHHHHHHHC
Q ss_conf 371210354746789888516
Q gi|254780659|r 204 GDYNSSIGLDKEEPINRFITQ 224 (274)
Q Consensus 204 G~~~SVIG~~~~~~i~rf~t~ 224 (274)
=|.--+-|++++.+-+=+.+|
T Consensus 150 iPvvAIGGI~~~ni~~v~~~G 170 (202)
T PRK07695 150 IPVIAIGGITPENTRDVLAAG 170 (202)
T ss_pred CCEEEECCCCHHHHHHHHHCC
T ss_conf 998998698999999999829
No 82
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=51.82 E-value=5.8 Score=20.63 Aligned_cols=19 Identities=5% Similarity=0.118 Sum_probs=9.8
Q ss_pred HHHHHHCCCEEEEEECCCC
Q ss_conf 9997608957799806976
Q gi|254780659|r 163 CFAHFVDSRASLVVGTHTH 181 (274)
Q Consensus 163 A~g~~lDGrVsaVvGTHTH 181 (274)
.+-.|.+|.+..|.=-.||
T Consensus 159 ~~~~~~~~~~d~v~iiyn~ 177 (298)
T PRK13422 159 MLDKFTAGEIDRLYMSSNQ 177 (298)
T ss_pred HHHHHHCCCCCEEEEEECE
T ss_conf 9999866888889997220
No 83
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=51.40 E-value=6.4 Score=20.33 Aligned_cols=13 Identities=23% Similarity=-0.013 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 9899999998634
Q gi|254780659|r 128 DPFRTADKILATC 140 (274)
Q Consensus 128 ~PF~~~d~~l~~~ 140 (274)
+-|+.+.+.+++.
T Consensus 90 ~v~k~~~~~~~~~ 102 (285)
T TIGR03323 90 VILTFAAEELARL 102 (285)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999856
No 84
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=51.12 E-value=13 Score=18.36 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=30.5
Q ss_pred HHHHHHCCCCEEEECHHH-HCCCCH---HHHHHH--CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCC
Q ss_conf 999983799899934265-302220---475421--89389750079888754079998489928999996000058833
Q gi|254780659|r 52 FCEMMETGIDVITTGNHV-WDKREA---LVFSQR--HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPL 125 (274)
Q Consensus 52 ~~~l~~~GvDviT~GNH~-wd~kei---~~~i~~--~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~ 125 (274)
++++.++|.|.|--|--. -+...+ +..+.+ -|-+|-|-|-..-+|+.- -+.++.||-
T Consensus 24 ~~~~~~sgtDaI~VGGS~~vt~~~~~~~~~~ik~~~lPviLfPg~~~~vs~~aD----------a~lf~slln------- 86 (229)
T PRK04169 24 DLAICESGTDAIMIGGSDGVTEENVDELVSRIKRYDLPVILFPGNVEGISPGAD----------AYLFPSVLN------- 86 (229)
T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCC----------EEEEEEEEC-------
T ss_conf 999986299999988866568699999999986139898994598877485778----------688676534-------
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 2598999999986
Q gi|254780659|r 126 LDDPFRTADKILA 138 (274)
Q Consensus 126 ~d~PF~~~d~~l~ 138 (274)
-.||...+..-.+
T Consensus 87 s~np~~lig~~~~ 99 (229)
T PRK04169 87 SRDPYWIIGAQVE 99 (229)
T ss_pred CCCCHHHHHHHHH
T ss_conf 8991366789998
No 85
>PRK13131 consensus
Probab=51.01 E-value=21 Score=17.02 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH-CCCEEEECCCCCCCCCCCEEEE-ECCC-CCEEEEEEEEHHHCC
Q ss_conf 789999999983799899934265302220475421-8938975007988875407999-8489-928999996000058
Q gi|254780659|r 46 GITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR-HCKFLRPANYPPNTPGNGSGLY-CAKN-GSNVLVANIMGRVFM 122 (274)
Q Consensus 46 Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~-~~~ilRP~N~p~~~PG~G~~i~-~~~~-g~ki~Vinl~Gr~fM 122 (274)
-.|.+..+.|-+.|+|+|-.|=--=|---==+.|++ ..|-|+-.|. -+...++ ..++ ..++-+ ++|
T Consensus 25 e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~-----~~~~~~~~~~r~~~~~~pi------vlM 93 (257)
T PRK13131 25 ELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASM-----AKNFQLLKKIRDYNHHIPI------GLL 93 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHCCCCCCE------EEE
T ss_conf 89999999999779999997899888554559999999999978988-----9999999998704999888------999
Q ss_pred CCCCCCHHHH--HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHHC---CCCEE
Q ss_conf 8332598999--999986341368998-8999625762289999997608-957799806976246545640---36728
Q gi|254780659|r 123 NPLLDDPFRT--ADKILATCPLKEQAD-VIVFDFHAETTSEKQCFAHFVD-SRASLVVGTHTHIPTADAQIL---DGGTG 195 (274)
Q Consensus 123 ~~~~d~PF~~--~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A~g~~lD-GrVsaVvGTHTHV~TaD~rIL---p~GTa 195 (274)
. .-||+.. .++++++++. ...| .|++|.--|-..|=...+.-.+ ..+..| |- .|.++||- ...++
T Consensus 94 ~--Y~N~i~~yG~e~F~~~~~~-~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lv--aP---tt~~~Ri~~i~~~s~G 165 (257)
T PRK13131 94 A--YANLIFSYGVDGFYAQAKE-CGVDSVLIADMPLIEKELVIKSAQKHQIKQIFIA--SP---NASVKDLEQVATHSQG 165 (257)
T ss_pred C--CHHHHHHHCHHHHHHHHHH-CCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEE--CC---CCCHHHHHHHHHCCCC
T ss_conf 2--7689998579999999986-5998565589996788999999997798479972--89---9988999999835897
Q ss_pred ---EEECCCCCCCHHHCCCCCHHHHHHHHHH
Q ss_conf ---9840560137121035474678988851
Q gi|254780659|r 196 ---YITDLGMCGDYNSSIGLDKEEPINRFIT 223 (274)
Q Consensus 196 ---yiTDvGMtG~~~SVIG~~~~~~i~rf~t 223 (274)
|++=.|-||...+. --+....++|.+.
T Consensus 166 FiY~vs~~GvTG~~~~~-~~~~~~~i~~ik~ 195 (257)
T PRK13131 166 YIYTLARSGVTGASHTL-ENDASAIIKTLKT 195 (257)
T ss_pred EEEEEECCCCCCCCCCC-CHHHHHHHHHHHH
T ss_conf 49998457677986434-0769999999996
No 86
>TIGR02183 GRXA Glutaredoxin, GrxA family; InterPro: IPR011902 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry includes the Escherichia coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase .; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=50.43 E-value=21 Score=17.03 Aligned_cols=41 Identities=27% Similarity=0.292 Sum_probs=24.2
Q ss_pred EEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf 600005883325989999999863413689988999625762289
Q gi|254780659|r 116 IMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE 160 (274)
Q Consensus 116 l~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE 160 (274)
+-||..= |++=-.-+.++++..+. .+-++-+||+|||--|-
T Consensus 4 IfGr~gC-~YCVRA~~LaEkl~~~~---~DF~fry~Di~AEGI~K 44 (86)
T TIGR02183 4 IFGRPGC-PYCVRAKQLAEKLAEEL---ADFEFRYIDIHAEGISK 44 (86)
T ss_pred EECCCCC-CHHHHHHHHHHHHHHHC---CCCCCEEEEEEECCCCH
T ss_conf 7327998-40233688899988640---35562058887458871
No 87
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=50.13 E-value=7.2 Score=20.02 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=34.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-CCCCCHHHHCCCCEEEEECCCCCCCHHHCC
Q ss_conf 899962576228999999760895779980697-624654564036728984056013712103
Q gi|254780659|r 148 VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT-HIPTADAQILDGGTGYITDLGMCGDYNSSI 210 (274)
Q Consensus 148 ~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHT-HV~TaD~rILp~GTayiTDvGMtG~~~SVI 210 (274)
.-++|-||-+-.---+. +++...|.||-| |+.+++.. .-=-||||||++.+
T Consensus 251 ~g~IDAhag~~Gv~~~~----~~~l~~I~GTStC~m~~s~~~--------~~v~GvwGpy~~ai 302 (544)
T COG1069 251 AGIIDAHAGAVGVGGAQ----PGSLAMIAGTSTCHMLLSEKP--------RFVPGVWGPYDGAV 302 (544)
T ss_pred CCCEECCCCCCCCCCCC----CCEEEEEEECCEEEEEECCCC--------EECCCCCCCCCCCC
T ss_conf 23030014531025578----872799960555899706776--------01586401565432
No 88
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=50.13 E-value=22 Score=16.93 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=66.9
Q ss_pred HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEE-EEEEEHHHCCCCCCC
Q ss_conf 9999999837998999342653022204754218938975007988875407999848992899-999600005883325
Q gi|254780659|r 49 EKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVL-VANIMGRVFMNPLLD 127 (274)
Q Consensus 49 ~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~-Vinl~Gr~fM~~~~d 127 (274)
.+..+++++.|+++|-.=.-..+..+......+-..+.+..|- .++-. +-..++ -++.-| +.+. .-|
T Consensus 15 ~~~l~~~l~~gv~~iqlR~k~~~~~~~~~~a~~~~~~~~~~~~---------~liIn-d~~~lA~~~~~dG-vHl~-~~d 82 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGV---------PLIIN-DRVDLALAVGADG-VHLG-QDD 82 (196)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCC---------EEEEC-CHHHHHHHHCCCE-EECC-CCC
T ss_conf 9999999985999999867998999999999999999998099---------79978-8699999739987-9558-466
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHC-CC--EEEEEECCCCCCC---CHHHHCCCCEEEEECCC
Q ss_conf 989999999863413689988999625762289999997608-95--7799806976246---54564036728984056
Q gi|254780659|r 128 DPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVD-SR--ASLVVGTHTHIPT---ADAQILDGGTGYITDLG 201 (274)
Q Consensus 128 ~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lD-Gr--VsaVvGTHTHV~T---aD~rILp~GTayiTDvG 201 (274)
.|...+.+.+.. ..+|=+--|. .|-...+..+. .- ++.|+-|-||-.. .....+..=.. .+
T Consensus 83 ~~~~~~r~~~~~------~~iiG~S~h~---~~e~~~a~~~g~DYi~~gpvf~T~tK~~~~~~~g~~~l~~~~~-~~--- 149 (196)
T cd00564 83 LPVAEARALLGP------DLIIGVSTHS---LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAE-LV--- 149 (196)
T ss_pred CCHHHHHHHHCC------CCEEEECCCC---HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH-HC---
T ss_conf 899999987288------9758824788---9999998870999388646557898888778778899999998-67---
Q ss_pred CCCCHHHCCCCCHHHHHHHHHHC
Q ss_conf 01371210354746789888516
Q gi|254780659|r 202 MCGDYNSSIGLDKEEPINRFITQ 224 (274)
Q Consensus 202 MtG~~~SVIG~~~~~~i~rf~t~ 224 (274)
--|.--+-|++++.+-+-..+|
T Consensus 150 -~~Pv~AiGGI~~~ni~~~~~~G 171 (196)
T cd00564 150 -EIPVVAIGGITPENAAEVLAAG 171 (196)
T ss_pred -CCCEEEECCCCHHHHHHHHHCC
T ss_conf -9998998589999999999809
No 89
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=49.94 E-value=14 Score=18.19 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=31.0
Q ss_pred HHHHHCCCCEEEECHHHHCCC---CHHHHHHH----CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCC
Q ss_conf 999837998999342653022---20475421----89389750079888754079998489928999996000058833
Q gi|254780659|r 53 CEMMETGIDVITTGNHVWDKR---EALVFSQR----HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPL 125 (274)
Q Consensus 53 ~~l~~~GvDviT~GNH~wd~k---ei~~~i~~----~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~ 125 (274)
+...++|.|.|--|--.--+. +.+..+.+ -|-+|-|-|-..-+|+.-+ +.++.||.
T Consensus 19 ~~~~~sgtDai~VGGS~~~~~~~~~~v~~ik~~~~~~PvilfPg~~~~is~~aDa----------~lf~sllN------- 81 (219)
T cd02812 19 KLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPEAVSPGADA----------YLFPSVLN------- 81 (219)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCE----------EEEEEEEC-------
T ss_conf 9999769999999375574477999999999737899989957986656867786----------88687533-------
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 25989999999863
Q gi|254780659|r 126 LDDPFRTADKILAT 139 (274)
Q Consensus 126 ~d~PF~~~d~~l~~ 139 (274)
-.||...+..-++.
T Consensus 82 s~n~~~lig~~~~a 95 (219)
T cd02812 82 SGDPYWIIGAQAEA 95 (219)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 89923677889999
No 90
>TIGR01146 ATPsyn_F1gamma ATP synthase F1, gamma subunit; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex . The best-conserved region of the gamma subunit is its C-terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016020 membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=49.46 E-value=4.8 Score=21.13 Aligned_cols=27 Identities=33% Similarity=0.708 Sum_probs=18.3
Q ss_pred CCEEEE---ECCCCCCCHHHCCCCCHHHHHHHHHHCC
Q ss_conf 672898---4056013712103547467898885168
Q gi|254780659|r 192 GGTGYI---TDLGMCGDYNSSIGLDKEEPINRFITQI 225 (274)
Q Consensus 192 ~GTayi---TDvGMtG~~~SVIG~~~~~~i~rf~t~~ 225 (274)
+-++|+ ||=|+||.||| .++++....+
T Consensus 81 Kk~~~~v~tsDrGLCGg~N~-------n~~k~~~~~~ 110 (330)
T TIGR01146 81 KKVGLLVITSDRGLCGGYNS-------NILKRVEQRA 110 (330)
T ss_pred CEEEEEEEECCCCCHHHHHH-------HHHHHHHHHH
T ss_conf 72799987058630457889-------9999999998
No 91
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=48.75 E-value=9.2 Score=19.32 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 98999999986341
Q gi|254780659|r 128 DPFRTADKILATCP 141 (274)
Q Consensus 128 ~PF~~~d~~l~~~~ 141 (274)
+-++.+.+.+++.+
T Consensus 95 ni~k~~~~~i~~~~ 108 (286)
T PRK13427 95 NVNRMAKAKIEEWK 108 (286)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
No 92
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=48.64 E-value=6.6 Score=20.24 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=8.3
Q ss_pred HHHHHHCCCEEEEEECCCC
Q ss_conf 9997608957799806976
Q gi|254780659|r 163 CFAHFVDSRASLVVGTHTH 181 (274)
Q Consensus 163 A~g~~lDGrVsaVvGTHTH 181 (274)
.+..|+.|.++.|.=-|||
T Consensus 160 ~~~~~~~g~~d~v~iiyn~ 178 (291)
T PRK13425 160 ASGMYLRGEVDKVVVVYNE 178 (291)
T ss_pred HHHHHHCCCCCEEEEEEEC
T ss_conf 9998854898738997222
No 93
>pfam00231 ATP-synt ATP synthase.
Probab=48.64 E-value=7.3 Score=19.97 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 59899999998634
Q gi|254780659|r 127 DDPFRTADKILATC 140 (274)
Q Consensus 127 d~PF~~~d~~l~~~ 140 (274)
.+-|+.+.+.+++.
T Consensus 93 ~~i~k~~~~~~~~~ 106 (288)
T pfam00231 93 SNVIKAALELIKEL 106 (288)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999975
No 94
>PRK13126 consensus
Probab=47.83 E-value=23 Score=16.70 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=32.9
Q ss_pred CHHHH-HHHHHHHCCCCCCCC-EEEEECCCCCHHHH---HHHHHHH-CCCEEEEEECCCCCCC-CHHHH-----CCCCEE
Q ss_conf 98999-999986341368998-89996257622899---9999760-8957799806976246-54564-----036728
Q gi|254780659|r 128 DPFRT-ADKILATCPLKEQAD-VIVFDFHAETTSEK---QCFAHFV-DSRASLVVGTHTHIPT-ADAQI-----LDGGTG 195 (274)
Q Consensus 128 ~PF~~-~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK---~A~g~~l-DGrVsaVvGTHTHV~T-aD~rI-----Lp~GTa 195 (274)
|||.. .++++++... ...+ .|+.|.--|-.-|- ...+.-. --.+-.+ + || .|+|+ ..+|--
T Consensus 78 N~~~~g~~~f~~~~~~-aGvdGlIipDLP~e~~ee~~~~~~~~~~~gl~~I~lv--~----ptt~~~ri~~i~~~s~gfi 150 (237)
T PRK13126 78 EDYAGSPAELFETAAE-VGARGVLAPDLLIDFPGDLERYLELSREYGLAPSFFI--P----SKFPHRLLRRLASLEPDFI 150 (237)
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEE--C----CCCHHHHHHHHHHHCCCEE
T ss_conf 8776569999999987-4997388368887781778999999997699779973--8----9983999999998589879
Q ss_pred EEECCCCCCCH
Q ss_conf 98405601371
Q gi|254780659|r 196 YITDLGMCGDY 206 (274)
Q Consensus 196 yiTDvGMtG~~ 206 (274)
|++=.|-||..
T Consensus 151 Yvs~~gvTG~~ 161 (237)
T PRK13126 151 YLGLYAATGIE 161 (237)
T ss_pred EEEEECCCCCC
T ss_conf 99865266764
No 95
>KOG0685 consensus
Probab=47.40 E-value=11 Score=18.72 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=56.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE--CHHHHCCCC
Q ss_conf 2699972027688999999808988860998999917004788678999999998379989993--426530222
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT--GNHVWDKRE 74 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~--GNH~wd~ke 74 (274)
||..|| -|-+|..+-++.| +.--.|+.|.-|++-.||+=-|-.-++..+++|+.-|-+ ||-+|+.-+
T Consensus 23 kIvIIG--AG~AGLaAA~rLl----e~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~ 91 (498)
T KOG0685 23 KIVIIG--AGIAGLAAATRLL----ENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAK 91 (498)
T ss_pred EEEEEC--CCHHHHHHHHHHH----HHCCCEEEEEEECCCCCCEEEEEECCCCEEEECCEEECCCCCCHHHHHHH
T ss_conf 499989--8567799999999----82896489997046667557668727873762466633778873999998
No 96
>pfam10150 RNase_E_G Ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs.
Probab=47.10 E-value=22 Score=16.88 Aligned_cols=149 Identities=11% Similarity=0.142 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCEECC------CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH-CC---
Q ss_conf 89999998089888609989999170047------886789999999983799899934265302220475421-89---
Q gi|254780659|r 14 GRSIVYEMLPRLIRDFQLDFVIANGENSA------GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR-HC--- 83 (274)
Q Consensus 14 Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa------~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~-~~--- 83 (274)
....+.+.+..|+++| +-+.-+.+++. ....+..+...++++..++-|..-+.-.. +++.+|+.. .|
T Consensus 55 ~~e~l~~e~~~L~~~w--~~i~~~~~~~~~p~ll~~~~~~~~~~lrD~~~~~~~~IivDd~~~~-~~~~~~~~~~~p~~~ 131 (271)
T pfam10150 55 SEEELAADLEYLLKLW--EEILKKAKSAKAPSLLYEELDLVLRALRDLLNPDVDEIIVDDREAY-EKLKEFLKEFAPELA 131 (271)
T ss_pred CHHHHHHHHHHHHHHH--HHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHH-HHHHHHHHHHCCCHH
T ss_conf 9999999999999999--9999998459998598838858999999726533509995688999-999999998681111
Q ss_pred CEEEECC----------C----------CCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC-C-----CCCHHHHHHHHH
Q ss_conf 3897500----------7----------988875407999848992899999600005883-3-----259899999998
Q gi|254780659|r 84 KFLRPAN----------Y----------PPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNP-L-----LDDPFRTADKIL 137 (274)
Q Consensus 84 ~ilRP~N----------~----------p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~-~-----~d~PF~~~d~~l 137 (274)
..++-.+ . --..|+=||-+++.. .-+.||-+=---|... . +.-=..++.++-
T Consensus 132 ~~v~~~~~~~~lF~~~~ie~~i~~~~~~~V~L~sGG~lvIe~T--EAlt~IDVNSG~~~~~~~~e~t~l~~NleAa~EIa 209 (271)
T pfam10150 132 KKVELYEGERPLFDLYGIEEQIEKALSRKVWLKSGGYLVIEQT--EALTAIDVNSGKFTGKRNLEETALKTNLEAAKEIA 209 (271)
T ss_pred HHHHHHCCCCCHHHHCCHHHHHHHHHCCCEEECCCCEEEEECC--CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1210214788867645859999998448589189977999425--14789850466555667778889999999999999
Q ss_pred HHCCCCCCCCEEEEECCC-CCHHHHHHHHHH
Q ss_conf 634136899889996257-622899999976
Q gi|254780659|r 138 ATCPLKEQADVIVFDFHA-ETTSEKQCFAHF 167 (274)
Q Consensus 138 ~~~~~~~~~~~i~VDfHa-EaTSEK~A~g~~ 167 (274)
.++.|++-.-+|+|||=- ...+.+.++--.
T Consensus 210 rQlrLRni~GiIvIDFIdm~~~~~~~~v~~~ 240 (271)
T pfam10150 210 RQLRLRNLGGIIVIDFIDMEDEEHRRQVLRA 240 (271)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998568888399977888987889999999
No 97
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=47.03 E-value=24 Score=16.62 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=11.0
Q ss_pred HHHHHHHHHHCCCCEEEEC
Q ss_conf 9980898886099899991
Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIAN 37 (274)
Q Consensus 19 ~~~Lp~l~~~~~~DfvIaN 37 (274)
...+.++.+++++|.|-++
T Consensus 73 ~~~l~~~~~~~~~DvvH~h 91 (371)
T cd04962 73 ASKIAEVAKRYKLDLLHVH 91 (371)
T ss_pred HHHHHHHHHHCCCCEEEEC
T ss_conf 9999999997399889972
No 98
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=46.57 E-value=18 Score=17.38 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=9.9
Q ss_pred HHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 9998379989993426530222047542
Q gi|254780659|r 53 CEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 53 ~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
.++.+.|+||+-+==.+..++|....++
T Consensus 27 ~~l~~~G~DVViG~vEthgR~eT~~l~~ 54 (211)
T pfam02702 27 HELLERGVDVVIGYVETHGRAETAALLE 54 (211)
T ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHC
T ss_conf 9999789956999953799789999976
No 99
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase; InterPro: IPR013447 Proteins in this entry match the enzyme RhaD, rhamnulose-1-phosphate aldolase (4.1.2.19 from EC).; GO: 0008994 rhamnulose-1-phosphate aldolase activity.
Probab=46.45 E-value=22 Score=16.87 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHHHHCCCCEEEECHHHH--CCCCHHHHHHHCCCEEEECCCC
Q ss_conf 999999837998999342653--0222047542189389750079
Q gi|254780659|r 50 KIFCEMMETGIDVITTGNHVW--DKREALVFSQRHCKFLRPANYP 92 (274)
Q Consensus 50 ~~~~~l~~~GvDviT~GNH~w--d~kei~~~i~~~~~ilRP~N~p 92 (274)
|.-.+|...|=|=-=+||=++ +++|+.+|.++..+++|-..+.
T Consensus 15 ktT~dly~~GWDERNGGNisl~L~~eEv~~Y~~~~~q~~R~Ipl~ 59 (273)
T TIGR02624 15 KTTSDLYRLGWDERNGGNISLRLKEEEVEPYLDDFKQVLRKIPLK 59 (273)
T ss_pred HHHHHHHHCCCCEECCCCCEECCCHHHHHHHHCCCCCCEEEEECC
T ss_conf 988999863882205752200157678988614624110367314
No 100
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=46.39 E-value=7.8 Score=19.78 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=5.9
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 9976089577998
Q gi|254780659|r 164 FAHFVDSRASLVV 176 (274)
Q Consensus 164 ~g~~lDGrVsaVv 176 (274)
+-+|++|.+..|.
T Consensus 158 ~~~~~~~~~d~v~ 170 (291)
T PRK13424 158 INAYLTGELDEVV 170 (291)
T ss_pred HHHHHCCCCCEEE
T ss_conf 9987558987389
No 101
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=46.32 E-value=25 Score=16.55 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=51.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf 699972027688999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r 3 LLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274)
Q Consensus 3 iLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274)
-|.+=|+-+..|+..-.+.+.++.++..+-+.+ |-|| +.+.+++++++|+|-+..|..++..+.+.+.+.+
T Consensus 51 ~lhivDLda~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~~~~~~~l~~Gadkvvigs~~~~~~~~~~~~~~ 122 (233)
T cd04723 51 GLYIADLDAIMGRGDNDEAIRELAAAWPLGLWV--------DGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAA 122 (233)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEECCCHHCCCHHHHHHHHH
T ss_conf 899997865469975399999999878998899--------702276999999986072015245100499899999999
No 102
>PRK08618 ornithine cyclodeaminase; Validated
Probab=45.49 E-value=21 Score=16.97 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=4.3
Q ss_pred ECCCCCEEEEE
Q ss_conf 84899289999
Q gi|254780659|r 104 CAKNGSNVLVA 114 (274)
Q Consensus 104 ~~~~g~ki~Vi 114 (274)
...+|..++++
T Consensus 91 d~~TG~p~ail 101 (325)
T PRK08618 91 DFETGEVLAIL 101 (325)
T ss_pred ECCCCCEEEEE
T ss_conf 88989789998
No 103
>PRK00346 surE stationary phase survival protein SurE; Provisional
Probab=44.77 E-value=26 Score=16.40 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=34.4
Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHH
Q ss_conf 926999-72027688999999808988860998999917004788678999
Q gi|254780659|r 1 MRLLFL-GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEK 50 (274)
Q Consensus 1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~ 50 (274)
||||.- -|=+-.||.+++.+.|.++ +++-.|--..|.|+-|..||-.
T Consensus 1 M~ILlTNDDGi~a~Gl~~L~~~l~~~---~~V~VvAP~~~~Sg~g~sit~~ 48 (246)
T PRK00346 1 MRILLTNDDGIHAPGIAALAEALREL---ADVTVVAPDRERSGASHSLTLT 48 (246)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCC
T ss_conf 95999707888987899999999756---9899991388875664554468
No 104
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=44.68 E-value=20 Score=17.07 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=42.1
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCC
Q ss_conf 99999999837998999342653022204754218938975007988875407999848992899999600005883325
Q gi|254780659|r 48 TEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLD 127 (274)
Q Consensus 48 t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d 127 (274)
|-..++.-.+.|+|.|-+==| --||=...+-.++.+-|..|- .|. +-+. .-..+.-++ .|.-|-.....
T Consensus 24 Tl~Af~~A~~~G~d~iE~DV~--lTkDg~~Vv~HD~~l~Rtt~~------~~~-v~~~-t~~eL~~ld-~g~~~~~~~~~ 92 (249)
T PRK09454 24 TLAAIDVGARYGHKMIEFDAK--LSADGVIFLLHDDTLERTSNG------WGV-AGEL-TWQDLARLD-AGSWYSAAFAG 92 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEEE--ECCCCCEEEECCCCCCCCCCC------CCE-EECC-CHHHHHHCC-CCCCCCCCCCC
T ss_conf 499999999849999999856--968999999769866544799------513-4315-466642102-34544776799
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 989999999863413689988999625
Q gi|254780659|r 128 DPFRTADKILATCPLKEQADVIVFDFH 154 (274)
Q Consensus 128 ~PF~~~d~~l~~~~~~~~~~~i~VDfH 154 (274)
-+..+++++|+.++ ..--.+.|+.-
T Consensus 93 e~iPtL~evl~~~~--~~~~~l~iEiK 117 (249)
T PRK09454 93 EPLPTLSQVAARCR--AHGMAANIEIK 117 (249)
T ss_pred CCCCCHHHHHHHHH--HCCCEEEEEEC
T ss_conf 86980999999877--53947988733
No 105
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=44.67 E-value=26 Score=16.39 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=21.4
Q ss_pred HHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 089888609989999170047886789999999983799899934
Q gi|254780659|r 22 LPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274)
Q Consensus 22 Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274)
++++..++++|.||+ .+|.++-++.|.++||+++..=
T Consensus 57 ~a~~l~~~gvdvvi~--------~~iG~~a~~~l~~~GIkv~~~~ 93 (121)
T COG1433 57 IAELLVDEGVDVVIA--------SNIGPNAYNALKAAGIKVYVAP 93 (121)
T ss_pred HHHHHHHCCCCEEEE--------CCCCHHHHHHHHHCCCEEEECC
T ss_conf 999999769989997--------7669779999997495799659
No 106
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=44.60 E-value=22 Score=16.81 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHCCCC
Q ss_conf 746789888516886
Q gi|254780659|r 213 DKEEPINRFITQIPR 227 (274)
Q Consensus 213 ~~~~~i~rf~t~~p~ 227 (274)
..+.+++|.+...|.
T Consensus 173 ~i~~Av~~aR~~~~~ 187 (280)
T COG0157 173 SITEAVRRARAAAPF 187 (280)
T ss_pred CHHHHHHHHHHHCCC
T ss_conf 599999999975899
No 107
>KOG0566 consensus
Probab=44.56 E-value=13 Score=18.29 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH
Q ss_conf 88999999808988860998999917004788678999999998
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM 56 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~ 56 (274)
+-..+..+|..+|+++|++ +.|+|==-.-+|-----+.|++.+
T Consensus 293 asq~aFdrHf~~L~~~YG~-v~IVNLLgtk~gE~~Ls~~fk~hl 335 (1080)
T KOG0566 293 ASQPAFDRHFSKLREKYGP-VYIVNLLGTKEGEESLSEAFKRHL 335 (1080)
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 3057899999999986196-899985668615899999999998
No 108
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=44.32 E-value=26 Score=16.35 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCEEEECCEEC-CC------------CCCCCHHHH---------HHH-HHCCCCEEEECHHHHC-CCCH
Q ss_conf 9808988860998999917004-78------------867899999---------999-8379989993426530-2220
Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGENS-AG------------GFGITEKIF---------CEM-METGIDVITTGNHVWD-KREA 75 (274)
Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgENa-a~------------G~Git~~~~---------~~l-~~~GvDviT~GNH~wd-~kei 75 (274)
+.|-.+-++.++|+||+--|.- +. =||.+++-| ++| .++||-. |.--.+|+ ..+.
T Consensus 59 ~~i~~fa~~~~IDLvvVGPE~PL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPt-ta~~~~f~~~~~A 137 (485)
T PRK05784 59 GEVVKAAEEVSPDLVVIGPEEPLFAGVADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPG-RLRYGVFKDVEEA 137 (485)
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCC-CCCCCCCCCHHHH
T ss_conf 999999998199999989738876125899973799078968899414127889999999728996-6401213899999
Q ss_pred HHHHHHCCCEEEECCCCCCCCCCCEEE
Q ss_conf 475421893897500798887540799
Q gi|254780659|r 76 LVFSQRHCKFLRPANYPPNTPGNGSGL 102 (274)
Q Consensus 76 ~~~i~~~~~ilRP~N~p~~~PG~G~~i 102 (274)
..|++..+.++--+.= -+-|+|..|
T Consensus 138 ~~~l~~~~piVIKaDG--LAaGKGV~V 162 (485)
T PRK05784 138 YSFAEYGGSVAIKPAR--QAGGKGVKV 162 (485)
T ss_pred HHHHHHCCCEEEECCH--HCCCCCEEE
T ss_conf 9998648984992113--306785188
No 109
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.97 E-value=20 Score=17.15 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=45.8
Q ss_pred HHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH---HHHCCC-CHHHHHH---HCCCEEEECCCCC
Q ss_conf 80898886099899991700478867899999999837998999342---653022-2047542---1893897500798
Q gi|254780659|r 21 MLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN---HVWDKR-EALVFSQ---RHCKFLRPANYPP 93 (274)
Q Consensus 21 ~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN---H~wd~k-ei~~~i~---~~~~ilRP~N~p~ 93 (274)
.+..++.+-...|+-.--+-. ....++++.+..+|.|.|--|- ++.++- +.+.-|. +-|-+|-|-|-..
T Consensus 7 l~~~~~~~~~~H~tliDP~k~----~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~ 82 (240)
T COG1646 7 LLEKLDWRGKRHLTLIDPDKT----EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHHCCCEEEEEECCCCC----CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHC
T ss_conf 999851136158997476323----4528999999973998899778556447999999999975069988993588100
Q ss_pred CCCCCCE
Q ss_conf 8875407
Q gi|254780659|r 94 NTPGNGS 100 (274)
Q Consensus 94 ~~PG~G~ 100 (274)
-+|+.-.
T Consensus 83 is~~aDa 89 (240)
T COG1646 83 ISPYADA 89 (240)
T ss_pred CCCCCCE
T ss_conf 5725776
No 110
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.79 E-value=24 Score=16.61 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=12.4
Q ss_pred CCCCHHHCCCCCH--------HHHHHHHHHCCCC
Q ss_conf 0137121035474--------6789888516886
Q gi|254780659|r 202 MCGDYNSSIGLDK--------EEPINRFITQIPR 227 (274)
Q Consensus 202 MtG~~~SVIG~~~--------~~~i~rf~t~~p~ 227 (274)
..|-+|+|+-.+- +..++++....|.
T Consensus 156 R~gLsd~iLiKdNHi~~~g~i~~~v~~~~~~~~~ 189 (277)
T PRK05742 156 RIGLYDAFLIKENHIAACGGIAQAVAAAHRIAPG 189 (277)
T ss_pred CCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCCC
T ss_conf 5887635897454655506799999999984899
No 111
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.66 E-value=25 Score=16.54 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=7.9
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 46789888516886
Q gi|254780659|r 214 KEEPINRFITQIPR 227 (274)
Q Consensus 214 ~~~~i~rf~t~~p~ 227 (274)
-...+.+++...|.
T Consensus 179 ~~~~i~~~r~~~~~ 192 (281)
T PRK06543 179 LTEALRHVRAQLGH 192 (281)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999975899
No 112
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.44 E-value=22 Score=16.86 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=23.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 4788678999999998379989993426
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNH 68 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274)
+|++.||...+++.|.+.|.+|+-.+..
T Consensus 15 aag~~GIG~a~A~~la~~Ga~Vv~~~~~ 42 (252)
T PRK06079 15 VANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9998779999999999869999998488
No 113
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=43.35 E-value=27 Score=16.26 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=87.1
Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH---CC----------CCEEEEC
Q ss_conf 926999-720276889999998089888609989999170047886789999999983---79----------9899934
Q gi|254780659|r 1 MRLLFL-GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME---TG----------IDVITTG 66 (274)
Q Consensus 1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~---~G----------vDviT~G 66 (274)
||||.- -|=+-.||.+++.+.|.++ ..+-.|--..|.|+-|.+||-..--++.+ .| +||+-+|
T Consensus 1 MrILlTNDDGi~a~Gi~~L~~~l~~~---g~V~VVAP~~~~Sg~g~siTl~~Plr~~~~~~~g~~~yav~GTPaDCV~la 77 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPL---GEVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLA 77 (266)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCHHHHHHHH
T ss_conf 96999807998988899999999847---999999548998677577037997067885268851799779889999999
Q ss_pred HHHHCCCCHHHHHHHCCC-EEEECCCCCCCCCCCEEEEEC----------CCCC-EEEEEEEEHH--HCCCCCCCCHHHH
Q ss_conf 265302220475421893-897500798887540799984----------8992-8999996000--0588332598999
Q gi|254780659|r 67 NHVWDKREALVFSQRHCK-FLRPANYPPNTPGNGSGLYCA----------KNGS-NVLVANIMGR--VFMNPLLDDPFRT 132 (274)
Q Consensus 67 NH~wd~kei~~~i~~~~~-ilRP~N~p~~~PG~G~~i~~~----------~~g~-ki~Vinl~Gr--~fM~~~~d~PF~~ 132 (274)
=|.++ +.|. +|-=.|.-.+. |.-. +|-+ --|. -|++-..... -+... ...|..
T Consensus 78 l~~l~---------~~PDLVvSGIN~G~Nl-G~dv-i~ySGTV~AA~Eg~~~GiPsIA~S~~~~~~~~~~~~--~~~~~~ 144 (266)
T PRK13934 78 TYGLG---------RKYDLVLSGINLGDNT-SLQV-ILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLED--GEALEI 144 (266)
T ss_pred HHCCC---------CCCCEEEECCCCCCCC-CCCC-EECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC--HHHHHH
T ss_conf 86337---------8988899677578866-7240-151458899999985699859998432782100230--689999
Q ss_pred HHHH----HHHC---CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEE
Q ss_conf 9999----8634---1368998899962576228999999760895779980697624654564036728984
Q gi|254780659|r 133 ADKI----LATC---PLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYIT 198 (274)
Q Consensus 133 ~d~~----l~~~---~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiT 198 (274)
+..+ ++.+ .+.+.+++.=|-|=.-...|. .++++ -.|.+-.....+.|+=|.|.-|--
T Consensus 145 ~~~~~~~i~~~~l~~~~P~~~~lLNVN~P~~~~~~i-------k~~vt-r~g~~~~~~~~~~r~dprG~~yyW 209 (266)
T PRK13934 145 MKAVVRATAEYVLKRGMPKGVDVISVNFPRRLRRGV-------KAKLV-KAAKLRFAQQVERRVDPRGRAYYW 209 (266)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHCC-------EEEEE-EECCCCCCCCEEEEECCCCCEEEC
T ss_conf 999999999999864899877445336898853217-------08999-705744567614758879984675
No 114
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=43.12 E-value=24 Score=16.66 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=25.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCEEEECCEE
Q ss_conf 9269997202768899999980898886---099899991700
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRD---FQLDFVIANGEN 40 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~---~~~DfvIaNgEN 40 (274)
|||++|| ||..|.+++...+..=.+. +..+++-+|-..
T Consensus 1 Mri~vIG--vGgAG~nivd~l~~~~~~~~~~~~~~~iAvNTd~ 41 (349)
T cd02202 1 MRVLIIG--VGQAGGRIVDALNRHDKRSGFGYCVGALAINTAK 41 (349)
T ss_pred CEEEEEE--ECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCH
T ss_conf 9599998--4560289999999837656766517899998889
No 115
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=42.95 E-value=28 Score=16.22 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 78867899999999837998999342
Q gi|254780659|r 42 AGGFGITEKIFCEMMETGIDVITTGN 67 (274)
Q Consensus 42 a~G~Git~~~~~~l~~~GvDviT~GN 67 (274)
|||+=-+++...+.+++|++.+|+.|
T Consensus 144 AGGLI~~~edv~~aL~aGA~aVSTS~ 169 (174)
T pfam04309 144 AGGLIRTEEEVREALKAGAVAVSTSN 169 (174)
T ss_pred EECCCCCHHHHHHHHHCCCEEEECCC
T ss_conf 76783889999999984996998788
No 116
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.77 E-value=26 Score=16.43 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=7.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 4678988851688
Q gi|254780659|r 214 KEEPINRFITQIP 226 (274)
Q Consensus 214 ~~~~i~rf~t~~p 226 (274)
.++.+++.+...|
T Consensus 167 ~~~ai~~~r~~~~ 179 (272)
T PRK05848 167 LKSFIQHARKNIP 179 (272)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998589
No 117
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=42.16 E-value=11 Score=18.87 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 598999999986341
Q gi|254780659|r 127 DDPFRTADKILATCP 141 (274)
Q Consensus 127 d~PF~~~d~~l~~~~ 141 (274)
.+-++.+.+.+++.+
T Consensus 93 s~i~k~~~~~i~~~~ 107 (286)
T PRK13423 93 ANLCKAAERFIKENG 107 (286)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999876
No 118
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.93 E-value=29 Score=16.12 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=58.6
Q ss_pred EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r 3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
-|.+=|+-|. .|+..-.+.+.++.++..+-+.+ |-|| +.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus 47 ~lhivDLd~a~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~~~i~~~l~~Ga~kvvigs~~~~~~~~~~~i~ 118 (240)
T PRK13585 47 TLHLVDLDGAFEGSRKNADIIEKIVEATDVSIQL--------GGGIRSVEDAASLLDLGVDRVILGTAAIENPELVRELS 118 (240)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHH
T ss_conf 7999989772118944499999999737977899--------78858799999999769989993981131842889999
Q ss_pred H---CCCEEEECCC
Q ss_conf 1---8938975007
Q gi|254780659|r 81 R---HCKFLRPANY 91 (274)
Q Consensus 81 ~---~~~ilRP~N~ 91 (274)
+ ..+++=-+.+
T Consensus 119 ~~~G~~~ivvsiD~ 132 (240)
T PRK13585 119 DEFGSERVMVSLDA 132 (240)
T ss_pred HHHCCCEEEEEEEE
T ss_conf 87397217999993
No 119
>KOG2872 consensus
Probab=41.76 E-value=29 Score=16.10 Aligned_cols=66 Identities=23% Similarity=0.172 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 999999808988860998999917004788678999999998379989993426530222047542189389750079
Q gi|254780659|r 15 RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP 92 (274)
Q Consensus 15 r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p 92 (274)
+++|++.||++...--|=.+-|+|-- -..++|-..|.|||-+ +++||-+|-.....+. +----|..
T Consensus 237 ~~~Vk~rl~~~~~~~vPmi~fakG~g---------~~Le~l~~tG~DVvgL-DWTvdp~ear~~~g~~--VtlQGNlD 302 (359)
T KOG2872 237 AEAVKKRLPELGLAPVPMILFAKGSG---------GALEELAQTGYDVVGL-DWTVDPAEARRRVGNR--VTLQGNLD 302 (359)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC---------HHHHHHHHCCCCEEEE-CCCCCHHHHHHHHCCC--EEEECCCC
T ss_conf 99999861540477776699976860---------6899987348747752-0202678998751783--47756778
No 120
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.53 E-value=28 Score=16.24 Aligned_cols=11 Identities=27% Similarity=0.069 Sum_probs=4.4
Q ss_pred HHHHHHHHCCC
Q ss_conf 78988851688
Q gi|254780659|r 216 EPINRFITQIP 226 (274)
Q Consensus 216 ~~i~rf~t~~p 226 (274)
..+++.+...|
T Consensus 172 ~av~~~r~~~~ 182 (279)
T PRK08385 172 EAIRRAKEFSV 182 (279)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998489
No 121
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=41.22 E-value=29 Score=16.05 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=47.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEE-----CCCCCCCCHHH-HHHHHHCCCCEEEECHH
Q ss_conf 269997202768899999980898886099899991700-----47886789999-99998379989993426
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGEN-----SAGGFGITEKI-FCEMMETGIDVITTGNH 68 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgEN-----aa~G~Git~~~-~~~l~~~GvDviT~GNH 68 (274)
.|||.|-..-.-+-.+....++.+|++|. |..|--=++ .+.-.+++.+- +++|.++|.|.++.|--
T Consensus 109 Evli~gG~~p~~~~~y~~~~~~~ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~a 180 (370)
T COG1060 109 EVLIVGGEHPELSLEYYEELFRTIKEEFP-DLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGA 180 (370)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHCC-CHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCE
T ss_conf 99980576877436799999999988573-0343016788867987436888999999999769876747541
No 122
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=41.02 E-value=30 Score=16.03 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCEE---EEEEEEEEECCCCCEEEEEE
Q ss_conf 4678988851688654111-578719---99999998479986746789
Q gi|254780659|r 214 KEEPINRFITQIPRNRFVI-ANGPAT---LCGICAEISDVTGLAEKIAP 258 (274)
Q Consensus 214 ~~~~i~rf~t~~p~~r~~~-a~g~~~---l~gv~ieid~~tG~a~~I~r 258 (274)
|-..++-+-.|.|.--..+ ...+.. -+|.+++-++....|..|+.
T Consensus 313 P~kllEAma~G~PVV~s~~gg~~e~i~~~~~G~l~~~~d~~~la~~i~~ 361 (394)
T cd03794 313 PSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHEECCCEEEEECCCCHHHHHHHHHH
T ss_conf 6899999984997999589980776121880899779999999999999
No 123
>LOAD_HisDeac1 consensus
Probab=40.59 E-value=30 Score=15.99 Aligned_cols=65 Identities=26% Similarity=0.407 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf 2598999999986341368998899962---5762289999997608957799806976246545640367289840560
Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGM 202 (274)
Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGM 202 (274)
++|.=-++..++++.. ...+.+||| |+.-|.|- +|-|.+|- .+-.|-+ +....| ||.+..|.|.
T Consensus 139 ~NnvAiaa~~~~~~~~---~~rv~iiD~DvHhGnGt~~i----f~~d~~V~-~~SiH~~----~~~~yP-~tg~~~~~g~ 205 (295)
T LOAD_HisDeac1 139 FNNIAIAAKYLLKYHG---RIRVLIIDFDVHHGNGTQEA----FYDDDRVL-TVSLHQY----GQGFFP-GTGDIEEIGE 205 (295)
T ss_pred ECHHHHHHHHHHHHCC---CCCEEEECCCCCCCHHHHHH----HCCCCCEE-EEEECCC----CCCCCC-CCCCHHHHCC
T ss_conf 5789999999998669---98536841788997016698----64899867-7630477----887899-9898887087
Q ss_pred C
Q ss_conf 1
Q gi|254780659|r 203 C 203 (274)
Q Consensus 203 t 203 (274)
-
T Consensus 206 ~ 206 (295)
T LOAD_HisDeac1 206 G 206 (295)
T ss_pred C
T ss_conf 7
No 124
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.46 E-value=29 Score=16.10 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=17.4
Q ss_pred HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCC
Q ss_conf 99999837998999342653022204754218938975007988
Q gi|254780659|r 51 IFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPN 94 (274)
Q Consensus 51 ~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~ 94 (274)
.++--+-+--|.+-.|-... ++++..++.+..+..|.++.+|
T Consensus 41 ~~~~~~~are~gi~~G~~~~--~~if~~~~~~~~~~~~~~~~dG 82 (290)
T PRK06559 41 QAKVSLFAKEAGVLAGLTVF--QRVFTLFDAEVTFQNPHQFKDG 82 (290)
T ss_pred EEEEEEEECCCEEEECHHHH--HHHHHHHCCCEEEEEECCCCCC
T ss_conf 79999997899899669999--9999985995499982336889
No 125
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.34 E-value=30 Score=16.01 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=7.3
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 4678988851688
Q gi|254780659|r 214 KEEPINRFITQIP 226 (274)
Q Consensus 214 ~~~~i~rf~t~~p 226 (274)
.++++++.+...|
T Consensus 178 i~~av~~~r~~~~ 190 (281)
T PRK06106 178 VREAIRRARAGVG 190 (281)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997579
No 126
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.06 E-value=30 Score=15.99 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=4.9
Q ss_pred CCCCHHHCCCCC
Q ss_conf 013712103547
Q gi|254780659|r 202 MCGDYNSSIGLD 213 (274)
Q Consensus 202 MtG~~~SVIG~~ 213 (274)
..|-+|+|+-.|
T Consensus 166 R~gL~D~iLIKd 177 (288)
T PRK06978 166 RLALYDGILIKE 177 (288)
T ss_pred CCCCHHHHEEEH
T ss_conf 688412410303
No 127
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.99 E-value=27 Score=16.31 Aligned_cols=52 Identities=12% Similarity=-0.049 Sum_probs=32.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCC
Q ss_conf 478867899999999837998999342653022204754218-9389750079
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYP 92 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p 92 (274)
+++++||...+++.|.+.|.+|+-.++.-..++.+.+...+. ..++.++...
T Consensus 18 aag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvt 70 (272)
T PRK08159 18 VANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVVGHCDVT 70 (272)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99986899999999998699999974866899999999986498189983789
No 128
>pfam00850 Hist_deacetyl Histone deacetylase domain. Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins.
Probab=39.95 E-value=31 Score=15.92 Aligned_cols=84 Identities=23% Similarity=0.373 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCC
Q ss_conf 598999999986341368998899962---57622899999976089577998069762465456403672898405601
Q gi|254780659|r 127 DDPFRTADKILATCPLKEQADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMC 203 (274)
Q Consensus 127 d~PF~~~d~~l~~~~~~~~~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMt 203 (274)
+|.=-++..++++.. --.+.+||| |+.-|.|- +|-|.+|-- +-.|-+ + ..| ||++..|.|.-
T Consensus 131 NdvAiaa~~l~~~~~---~~rV~iiD~DvHhGnGtq~i----f~~~~~V~~-~SiH~~----~--~yP-~tG~~~~~G~~ 195 (302)
T pfam00850 131 NNVAIAARYLLKRYG---LKRVLIVDFDVHHGNGTQEI----FYDDPRVLT-ISIHQD----P--FYP-GTGFADEIGEG 195 (302)
T ss_pred HHHHHHHHHHHHHCC---CCEEEEEECCCCCCHHHHHH----HHCCCCEEE-EECCCC----C--CCC-CCCCCCCCCCC
T ss_conf 589999999998627---76499984789887227999----816998699-833568----8--889-98871314766
Q ss_pred CCHHHCC------CCCHHHHHHHHHHCC
Q ss_conf 3712103------547467898885168
Q gi|254780659|r 204 GDYNSSI------GLDKEEPINRFITQI 225 (274)
Q Consensus 204 G~~~SVI------G~~~~~~i~rf~t~~ 225 (274)
-...+.+ |..-+.-+..|...+
T Consensus 196 ~~~g~~~Nipl~~g~~d~~y~~~~~~~l 223 (302)
T pfam00850 196 RGEGYTLNVPLPPGTGDEEYLAAFEEIL 223 (302)
T ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 6778610235799998299999999999
No 129
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.90 E-value=31 Score=15.92 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=32.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC-CEEEECCCC
Q ss_conf 4788678999999998379989993426530222047542189-389750079
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC-KFLRPANYP 92 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~-~ilRP~N~p 92 (274)
+|+|.||...+++.|-+.|.+|+-.+..--..+++.+..++.. .+.-|++..
T Consensus 14 aa~g~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvt 66 (254)
T PRK07533 14 IANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPLLMPLDVR 66 (254)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88980899999999998799999982887789999999974598189991699
No 130
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.88 E-value=31 Score=15.92 Aligned_cols=14 Identities=43% Similarity=0.508 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 46789888516886
Q gi|254780659|r 214 KEEPINRFITQIPR 227 (274)
Q Consensus 214 ~~~~i~rf~t~~p~ 227 (274)
.+.++++.+...|.
T Consensus 179 i~~ai~~~r~~~~~ 192 (285)
T PRK07428 179 IGEAITRIRQQIPY 192 (285)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999974899
No 131
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=39.74 E-value=18 Score=17.47 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=8.9
Q ss_pred EEEEEHHHCCCCCCCCHHHHHH
Q ss_conf 9996000058833259899999
Q gi|254780659|r 113 VANIMGRVFMNPLLDDPFRTAD 134 (274)
Q Consensus 113 Vinl~Gr~fM~~~~d~PF~~~d 134 (274)
|-||-.+.|..-+++.|-.+++
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~ 103 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTAD 103 (345)
T ss_pred HEECCCCCCCCCCCCCCCEEEE
T ss_conf 3303432345530358640253
No 132
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=39.71 E-value=31 Score=15.90 Aligned_cols=216 Identities=13% Similarity=0.171 Sum_probs=108.7
Q ss_pred CEEEEEEECC--CH--------HHHHHHHHHHHHHHHHC-CCCEEEECCEECCCCCCCCHHHHHHHH----HCCCCEE-E
Q ss_conf 9269997202--76--------88999999808988860-998999917004788678999999998----3799899-9
Q gi|254780659|r 1 MRLLFLGDIV--GK--------TGRSIVYEMLPRLIRDF-QLDFVIANGENSAGGFGITEKIFCEMM----ETGIDVI-T 64 (274)
Q Consensus 1 MkiLfiGDIv--G~--------~Gr~~v~~~Lp~l~~~~-~~DfvIaNgENaa~G~Git~~~~~~l~----~~GvDvi-T 64 (274)
|||+-|-|.= .. .-.+.+++-|..+++.. .+|+||+.|.=+-.|. ++.|+.|. +.++-++ .
T Consensus 15 mkiiQISD~HL~~~~~~~~~g~dt~~~l~~vl~~i~~~~~~~D~viiTGDLs~dgs---~esY~~l~~~L~~l~~P~~~l 91 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAEQHEFDLIVATGDLAQDHS---AEAYQHFAEGIAPLRKPCVWL 91 (275)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHHCCCCEEEE
T ss_conf 79999836775878876352769899999999999845999889997640258999---999999999997269998995
Q ss_pred ECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEE--EHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 3426530222047542189389750079888754079998489928999996--00005883325989999999863413
Q gi|254780659|r 65 TGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANI--MGRVFMNPLLDDPFRTADKILATCPL 142 (274)
Q Consensus 65 ~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl--~Gr~fM~~~~d~PF~~~d~~l~~~~~ 142 (274)
.|||= ++..+..++...+ + .|. .+ ++.. .+.++..++= -|+.. ....+.-+.-.++.|++.+
T Consensus 92 PGNHD-~~~~m~~~l~~~~-~-~~~---------~~-v~~~-~~w~iI~LDS~~~g~~~-G~L~~~qL~wL~~~L~~~~- 155 (275)
T PRK11148 92 PGNHD-FQPAMYSALQDAG-I-SPA---------KH-VLIG-EHWQILLLDSQVFGVPH-GELSEFQLEWLERKLADAP- 155 (275)
T ss_pred CCCCC-CHHHHHHHHCCCC-C-CCC---------CE-EEEC-CCEEEEEEECCCCCCCC-CEECHHHHHHHHHHHHHCC-
T ss_conf 88762-3899998603266-7-865---------32-7964-98799999799999777-0839999999999997478-
Q ss_pred CCCCCEEEEECCCC------------CHHHHHHHHHHHC--CCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 68998899962576------------2289999997608--957799806976246545640367289840560137121
Q gi|254780659|r 143 KEQADVIVFDFHAE------------TTSEKQCFAHFVD--SRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNS 208 (274)
Q Consensus 143 ~~~~~~i~VDfHaE------------aTSEK~A~g~~lD--GrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~S 208 (274)
+.. .+|=+|=- .-....+|.--++ .+|-+|+-=|.|=+-. ... +|.-|.+ -|.-+
T Consensus 156 --~~~-~lV~lHHpPv~ig~~wmD~~~L~N~~~l~~il~~~~~Vk~v~~GHvHq~~~--~~~-~gi~~~~-----tPSTc 224 (275)
T PRK11148 156 --ERH-TLVLLHHHPLPAGSAWLDQHSLRNAHELAQVLAKFPNVKAILCGHIHQELD--LDW-NGRRLLA-----TPSTC 224 (275)
T ss_pred --CCC-EEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHH--HEE-CCEEEEE-----CCCCC
T ss_conf --998-799992798457983200111879999999997489904999626575677--069-9999997-----48721
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 0354746789888516886541115787199999999847998674678998
Q gi|254780659|r 209 SIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIR 260 (274)
Q Consensus 209 VIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~gv~ieid~~tG~a~~I~ri~ 260 (274)
+ -|.-+. ..|.+.....- -=++++.+.+.-.+.++|+-
T Consensus 225 ~----------QF~p~s--~~f~~d~~~PG--yR~l~L~~dG~~~t~V~Rv~ 262 (275)
T PRK11148 225 V----------QFKPHC--DNFTLDTIAPG--WRELELHADGSLETEVHRLA 262 (275)
T ss_pred E----------EECCCC--CCCCCCCCCCC--EEEEEECCCCCEEEEEEECC
T ss_conf 1----------146799--87540488997--07999748995898999826
No 133
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=39.47 E-value=31 Score=15.87 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=7.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 4678988851688
Q gi|254780659|r 214 KEEPINRFITQIP 226 (274)
Q Consensus 214 ~~~~i~rf~t~~p 226 (274)
.+..+++++...|
T Consensus 168 i~~av~~~r~~~~ 180 (268)
T cd01572 168 ITEAVRRARAAAP 180 (268)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998679
No 134
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.40 E-value=31 Score=15.88 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 46789888516886
Q gi|254780659|r 214 KEEPINRFITQIPR 227 (274)
Q Consensus 214 ~~~~i~rf~t~~p~ 227 (274)
...++++.+...|.
T Consensus 185 i~~ai~~~r~~~~~ 198 (288)
T PRK07896 185 VVAALRAVRAAAPD 198 (288)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999985899
No 135
>pfam09347 DUF1989 Domain of unknown function (DUF1989). This family of proteins are functionally uncharacterized.
Probab=39.37 E-value=31 Score=15.88 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=64.8
Q ss_pred CCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 75407999848992899999600005883325989999999863413689988999625762289999997608957799
Q gi|254780659|r 96 PGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLV 175 (274)
Q Consensus 96 PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaV 175 (274)
||.|| .+..+.|..+.|+++.|+.-- | ++=|.|+-++|...|++-++-.=++-
T Consensus 6 ~g~~~-a~~v~~Gq~lri~d~~G~Q~v------------------------D--~~~~na~d~~Er~s~~~T~~~~~~~~ 58 (167)
T pfam09347 6 AGSGW-SFRVKRGQVLRIIDLEGNQVV------------------------D--LLAYNADDPSERYSAADTRKAQGTAY 58 (167)
T ss_pred CCCEE-EEEECCCCEEEEEECCCCCEE------------------------E--EEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf 99717-999899988999968999278------------------------7--89970678655659899998744511
Q ss_pred EECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHH
Q ss_conf 80697624654564036728984056013712103547467898
Q gi|254780659|r 176 VGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPIN 219 (274)
Q Consensus 176 vGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~ 219 (274)
+++....-+..-|.|- | .+-|- +|-.|.++|.--....+
T Consensus 59 l~~G~~L~S~~~rpm~--t-Iv~Dt--~G~HDtl~~~C~~~~~~ 97 (167)
T pfam09347 59 LTTGDVLYSNMGRPML--T-IVEDT--VGRHDTLGGACSAESNT 97 (167)
T ss_pred CCCCCEEECCCCCEEE--E-EECCC--CCCCCCCCCCCCHHHHH
T ss_conf 4789886818997689--9-98568--98602456668989999
No 136
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=38.88 E-value=32 Score=15.82 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=15.5
Q ss_pred HHHHHHHHCCCCEEEEC---HHHHCCCCHHHHHHH
Q ss_conf 99999983799899934---265302220475421
Q gi|254780659|r 50 KIFCEMMETGIDVITTG---NHVWDKREALVFSQR 81 (274)
Q Consensus 50 ~~~~~l~~~GvDviT~G---NH~wd~kei~~~i~~ 81 (274)
+-++.|.++|+|+|..- -|.-...+.+.++.+
T Consensus 245 eRa~~Lv~aGvD~lviD~AhGhs~~v~~~ik~ik~ 279 (497)
T PRK07107 245 ERVPALVEAGADVLCIDSSDGYSEWQKRTLDYIKE 279 (497)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999998599999803435352999999999998
No 137
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=38.84 E-value=32 Score=15.81 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=27.5
Q ss_pred HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH-HHHC
Q ss_conf 886099899991700478867899999999837998999342-6530
Q gi|254780659|r 26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN-HVWD 71 (274)
Q Consensus 26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN-H~wd 71 (274)
.-..+||+||+.. +...+..++|.++|+.++.... +.|+
T Consensus 56 i~~l~PDLVi~~~-------~~~~~~~~~L~~~gi~v~~~~~~~~~~ 95 (195)
T cd01143 56 IVALKPDLVIVSS-------SSLAELLEKLKDAGIPVVVLPAASSLD 95 (195)
T ss_pred HHCCCCCEEEEEC-------CCCHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 9616999999827-------874779999864188599975899999
No 138
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=38.45 E-value=32 Score=15.77 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=5.5
Q ss_pred HHHCCCCEEEECCEE
Q ss_conf 886099899991700
Q gi|254780659|r 26 IRDFQLDFVIANGEN 40 (274)
Q Consensus 26 ~~~~~~DfvIaNgEN 40 (274)
-+++++||||+--|+
T Consensus 57 ~~~~~idlviiGPE~ 71 (99)
T pfam02844 57 AKEENIDLVVVGPEA 71 (99)
T ss_pred HHHCCCCEEEECCCH
T ss_conf 998197499989606
No 139
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=38.44 E-value=32 Score=15.79 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=6.4
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 4678988851688
Q gi|254780659|r 214 KEEPINRFITQIP 226 (274)
Q Consensus 214 ~~~~i~rf~t~~p 226 (274)
..+++++.+...|
T Consensus 195 i~~av~~ar~~~~ 207 (296)
T PRK09016 195 IRQAVEKAFWLHP 207 (296)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998689
No 140
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=38.14 E-value=33 Score=15.74 Aligned_cols=95 Identities=20% Similarity=0.401 Sum_probs=59.2
Q ss_pred CEEEEEEEEHHHCCCCC---CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 28999996000058833---259899999998634136899889996257622899999976089577998069762465
Q gi|254780659|r 109 SNVLVANIMGRVFMNPL---LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTA 185 (274)
Q Consensus 109 ~ki~Vinl~Gr~fM~~~---~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~Ta 185 (274)
+.++|+- |. ++==|.++.+=.+.+| ..+=.++==..+.-.|.-+.---.|+|..|+|||
T Consensus 562 KQVavLV--------PTT~LA~QHf~tf~~RF~~fP----v~I~~LSRF~~~~E~~~iL~~la~G~iDI~IGTH------ 623 (997)
T TIGR00580 562 KQVAVLV--------PTTILAQQHFETFKERFANFP----VTIELLSRFRSAKEKKEILKELASGKIDILIGTH------ 623 (997)
T ss_pred CEEEEEC--------CHHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCH------
T ss_conf 1168962--------704427778899999737898----1687527756737899999997559422663010------
Q ss_pred HHHHCCCCEEEEECCCCCC-CHHHCCCCCHHHHHHHHHHC
Q ss_conf 4564036728984056013-71210354746789888516
Q gi|254780659|r 186 DAQILDGGTGYITDLGMCG-DYNSSIGLDKEEPINRFITQ 224 (274)
Q Consensus 186 D~rILp~GTayiTDvGMtG-~~~SVIG~~~~~~i~rf~t~ 224 (274)
|||.+.+.| =|+|.-= +-.===|++-.+.|+..++.
T Consensus 624 --~lL~k~v~F-KdLGLlIiDEEQRFGV~~KE~lK~~~~~ 660 (997)
T TIGR00580 624 --KLLQKDVKF-KDLGLLIIDEEQRFGVKQKEKLKELKTS 660 (997)
T ss_pred --HHHCCCEEE-ECCCCEEEECCCCCCCCHHHHHCCCCCC
T ss_conf --412785468-6386469831434883115553001567
No 141
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=37.70 E-value=33 Score=15.70 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=35.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC
Q ss_conf 926999720276889999998089888609989999170047886789
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT 48 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git 48 (274)
|||.+|| |-|+=-+..-.+++....+.++.+=-|-+.++-|||..
T Consensus 1 MkI~~iG---GGPaGLYfailmK~~~P~~eI~V~ErN~~~dTfGwGVV 45 (770)
T PRK08255 1 MRIVCIG---GGPAGLYFGLLMKLRDPAHEVTVVERNRPYDTFGWGVV 45 (770)
T ss_pred CEEEEEC---CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEE
T ss_conf 9499977---87589999999986589997479842799995244687
No 142
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=37.67 E-value=24 Score=16.62 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECH-HHH-CCCCHHHHHHHCCC--EEEECCCCC------CCCCCCEEEEECC------
Q ss_conf 8867899999999837998999342-653-02220475421893--897500798------8875407999848------
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGN-HVW-DKREALVFSQRHCK--FLRPANYPP------NTPGNGSGLYCAK------ 106 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GN-H~w-d~kei~~~i~~~~~--ilRP~N~p~------~~PG~G~~i~~~~------ 106 (274)
.-.|++|+.++++.+.|..++-.-= ++- -|+.+..+-++--. |+=-.|-|+ .+++..+ ++...
T Consensus 73 rAHGv~p~v~~~~~~~g~~vvDATCP~V~Kvh~~~~~~~~~Gy~iviiG~~~HpEV~Gi~g~~~~~~~-vi~~~e~~~~l 151 (670)
T PRK00087 73 RSHGVPPEVLEKLKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAI-ISKDGEEAANL 151 (670)
T ss_pred ECCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHEEECCCCCCEEE-EECCHHHHHCC
T ss_conf 28999989999999879959967882628999999999978798999879999541572444698179-98079998348
Q ss_pred CCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEE--EECCC
Q ss_conf 992899999600005883325989999999863413689988999625762289999997608957799--80697
Q gi|254780659|r 107 NGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLV--VGTHT 180 (274)
Q Consensus 107 ~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaV--vGTHT 180 (274)
...+++| .-|+-|.. +. |..+-..|.+ .-.++.+.|-=|.||++.|.-+.-|..+|.++ +|-+.
T Consensus 152 ~~~kv~v---vsQTT~~~--~~-~~~iv~~lk~----~~~e~~v~nTIC~AT~~RQ~a~~~LA~~vD~miVVGG~n 217 (670)
T PRK00087 152 PYPKVCV---VSQTTEKQ--EN-FEKVLKELKK----KGKEVKVFNTICNATAVRQEAAEKLAKKVDVMIVVGGKN 217 (670)
T ss_pred CCCCEEE---EECCCCCH--HH-HHHHHHHHHH----HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 8767899---98998988--99-9999999998----788876789854426889999999986599999989989
No 143
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=37.34 E-value=34 Score=15.66 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=8.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 4678988851688
Q gi|254780659|r 214 KEEPINRFITQIP 226 (274)
Q Consensus 214 ~~~~i~rf~t~~p 226 (274)
.+.++++++...|
T Consensus 167 ~~~av~~~r~~~~ 179 (269)
T cd01568 167 ITEAVKRARAAAP 179 (269)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998689
No 144
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=37.23 E-value=6.4 Score=20.35 Aligned_cols=28 Identities=39% Similarity=0.497 Sum_probs=19.8
Q ss_pred CCHHHHCCCCEEEEECCCCCCCHHHCCC
Q ss_conf 6545640367289840560137121035
Q gi|254780659|r 184 TADAQILDGGTGYITDLGMCGDYNSSIG 211 (274)
Q Consensus 184 TaD~rILp~GTayiTDvGMtG~~~SVIG 211 (274)
..-+||||||=-|+||+=.+=+-=|=||
T Consensus 90 ~~s~Ri~PGgflY~~Dll~~Psi~ski~ 117 (269)
T TIGR01743 90 SESERILPGGFLYLTDLLFKPSILSKIG 117 (269)
T ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf 2888403774755534541781577788
No 145
>PRK13122 consensus
Probab=37.18 E-value=34 Score=15.65 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=39.8
Q ss_pred CHHHH--HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHH-HHHHHCCCEEEEEECCCCCCCCHHHHC-----CCCEEE-E
Q ss_conf 98999--999986341368998-8999625762289999-997608957799806976246545640-----367289-8
Q gi|254780659|r 128 DPFRT--ADKILATCPLKEQAD-VIVFDFHAETTSEKQC-FAHFVDSRASLVVGTHTHIPTADAQIL-----DGGTGY-I 197 (274)
Q Consensus 128 ~PF~~--~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A-~g~~lDGrVsaVvGTHTHV~TaD~rIL-----p~GTay-i 197 (274)
||+.. .+++++++.. ...| .|++|+--|...|=.. +.-+-=--+..| +- .|.|+||- ..|=-| +
T Consensus 85 N~i~~~G~~~F~~~~~~-~GvdGvIipDLP~ee~~~~~~~~~~~gi~~I~lv--aP---tt~~~Ri~~i~~~s~GFiY~v 158 (242)
T PRK13122 85 NIICHYGEQAFFEKCRD-TGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLV--AM---TTDDKRIKDIVSHAEGFIYTV 158 (242)
T ss_pred HHHHHHCHHHHHHHHHH-CCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEE--CC---CCCHHHHHHHHHHCCCCEEEE
T ss_conf 69887279999999987-6998677789987889999999986798689871--89---998999999998299966987
Q ss_pred ECCCCCCCHHHCCCCCHHHHHHHHH
Q ss_conf 4056013712103547467898885
Q gi|254780659|r 198 TDLGMCGDYNSSIGLDKEEPINRFI 222 (274)
Q Consensus 198 TDvGMtG~~~SVIG~~~~~~i~rf~ 222 (274)
+=.|-||..... --+-+..+++.+
T Consensus 159 s~~GvTG~~~~~-~~~~~~~i~~ik 182 (242)
T PRK13122 159 TMNATTGQNGAF-HPELKRKIESIK 182 (242)
T ss_pred ECCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 335435765556-588999999999
No 146
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=37.07 E-value=34 Score=15.63 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=34.0
Q ss_pred EEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE-ECCCCC---HHHHHHHHHH--HCCCEEEEEE--CC----CCCC
Q ss_conf 600005883325989999999863413689988999-625762---2899999976--0895779980--69----7624
Q gi|254780659|r 116 IMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVF-DFHAET---TSEKQCFAHF--VDSRASLVVG--TH----THIP 183 (274)
Q Consensus 116 l~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~V-DfHaEa---TSEK~A~g~~--lDGrVsaVvG--TH----THV~ 183 (274)
-.||.-=.+.++.-.+++.++.++.+ +..++++ +.|... ..|..+...- +.++|..+-| ++ ....
T Consensus 190 ~~Grl~~~Kg~~~li~A~~~l~~~~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~lgl~~~V~f~~g~v~~~~~~~~~~ 266 (366)
T cd03822 190 TFGLLRPYKGLELLLEALPLLVAKHP---DVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFS 266 (366)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf 98534055485999999999887689---859999958987426678999999997399765532478889999999999
Q ss_pred CCHHHHCC
Q ss_conf 65456403
Q gi|254780659|r 184 TADAQILD 191 (274)
Q Consensus 184 TaD~rILp 191 (274)
.||.-++|
T Consensus 267 ~adv~v~P 274 (366)
T cd03822 267 AADVVVLP 274 (366)
T ss_pred HCCCCCCC
T ss_conf 55703055
No 147
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=36.72 E-value=29 Score=16.09 Aligned_cols=206 Identities=19% Similarity=0.227 Sum_probs=95.0
Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHHHH-HCCCCEEEECCEECCCCCCCCHHHHHHHHHCC----------CCEEEEC-H
Q ss_conf 926999-720276889999998089888-60998999917004788678999999998379----------9899934-2
Q gi|254780659|r 1 MRLLFL-GDIVGKTGRSIVYEMLPRLIR-DFQLDFVIANGENSAGGFGITEKIFCEMMETG----------IDVITTG-N 67 (274)
Q Consensus 1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~-~~~~DfvIaNgENaa~G~Git~~~~~~l~~~G----------vDviT~G-N 67 (274)
||||.- -|=+-.||.+++.+.+.++.. .+.+-.|--..|.|+-|..||-..--.+.+.| +||+.+| +
T Consensus 1 MrILiTNDDGi~a~Gi~aL~~~~~~~~~~~~~V~VvAP~~~~Sg~s~ait~~~pl~~~~~~~~~y~v~GTPaDCV~lal~ 80 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPGGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRRFAAEGSPADCVLAALH 80 (261)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHH
T ss_conf 96999817999981799999999987328985999805999744542757899856776178736547882899999986
Q ss_pred HHHCCCCHHHHHHHC-CCEEEECCCCCCCCCCCEEEEEC-----------CCCCEEEEEEEEHHHCCCCCCCCHHHHHHH
Q ss_conf 653022204754218-93897500798887540799984-----------899289999960000588332598999999
Q gi|254780659|r 68 HVWDKREALVFSQRH-CKFLRPANYPPNTPGNGSGLYCA-----------KNGSNVLVANIMGRVFMNPLLDDPFRTADK 135 (274)
Q Consensus 68 H~wd~kei~~~i~~~-~~ilRP~N~p~~~PG~G~~i~~~-----------~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~ 135 (274)
|.+. +.. +-++==.|.-... | .-++-+ .+=.-|+|-+..+.-.- ..++||..+.+
T Consensus 81 ~l~~--------~~~PDLVvSGIN~G~Nl-G--~dv~ySGTVgAA~Eg~~~gipsIAvS~~~~~~~~--~~~~~~~~a~~ 147 (261)
T PRK13931 81 DVMK--------DAPPDLVLSGVNRGNNS-A--ENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNE--GLDDPFEAART 147 (261)
T ss_pred HHCC--------CCCCCEEEECCCCCCCC-E--EEEECHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CCCCHHHHHHH
T ss_conf 4334--------89988899676588765-4--5143318889999999839995788710266544--54450899999
Q ss_pred --------HHHHCCCCCCCC---EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCC-CCHHHHCCCCEEEEECCCCC
Q ss_conf --------986341368998---899962576228999999760895779980697624-65456403672898405601
Q gi|254780659|r 136 --------ILATCPLKEQAD---VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIP-TADAQILDGGTGYITDLGMC 203 (274)
Q Consensus 136 --------~l~~~~~~~~~~---~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~-TaD~rILp~GTayiTDvGMt 203 (274)
+++... ....+ ++=|.|=....+| ..|..-+-.|-..+.. ..+.++-|.|--|--=.|..
T Consensus 148 ~~~~ii~~ll~~~~-~~~~~~~~~lNVN~P~~~~~~-------~kg~k~t~~g~r~~~~~~~~~~~~p~g~~~yw~~g~~ 219 (261)
T PRK13931 148 HGARVVRKLLAAGP-WEDEDYRLFYNVNFPPVPAAD-------VKGIRVAAQGFREGTRFGVEPHMSPSGRRFLWIKGGA 219 (261)
T ss_pred HHHHHHHHHHHCCC-CCCCCCCEEEECCCCCCCCCC-------CEEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCC
T ss_conf 99999999996014-237874548834579898556-------4038997712334666315642379997678845787
Q ss_pred CCHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 371210354746789888516886
Q gi|254780659|r 204 GDYNSSIGLDKEEPINRFITQIPR 227 (274)
Q Consensus 204 G~~~SVIG~~~~~~i~rf~t~~p~ 227 (274)
-..++--|-|....-+.+.+=.|-
T Consensus 220 ~~~~~~~~tD~~al~~gyISVTPL 243 (261)
T PRK13931 220 QQVPTAPGTDAAVNLDGYISVTPM 243 (261)
T ss_pred CCCCCCCCCHHHHHHCCEEEECCC
T ss_conf 787899897999997990897315
No 148
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=36.60 E-value=16 Score=17.71 Aligned_cols=94 Identities=13% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf 88875407999848992899999600005883325989999999863413689988999625762289999997608957
Q gi|254780659|r 93 PNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRA 172 (274)
Q Consensus 93 ~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrV 172 (274)
+-.||..+..+..+.|..|.|+++.|+.-- -++=|.|+..+|+..|+.-++-.-
T Consensus 5 etvp~g~~~s~~v~~Gq~lrI~d~~G~q~~--------------------------d~~~~na~d~~Er~~~~~T~k~q~ 58 (233)
T TIGR03425 5 ETVPGGGYWSKVLRRGTRLRLTDLEGGANV--------------------------SLLLYNADAPLERYNMADTLKVQW 58 (233)
T ss_pred EEECCCCCEEEEECCCCEEEEEECCCCEEE--------------------------EEEEECCCCCCCCCCHHHHHHHHC
T ss_conf 785799867899999988999918989477--------------------------898981799863305678887744
Q ss_pred EEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHH
Q ss_conf 799806976246545640367289840560137121035474678
Q gi|254780659|r 173 SLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEP 217 (274)
Q Consensus 173 saVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~ 217 (274)
++-+++..-.-+..-|+|- | -+-|- ||-+|.++|.--...
T Consensus 59 ~~~l~~G~~L~Sd~gR~m~--t-Iv~DT--~G~HDtl~g~c~~~~ 98 (233)
T TIGR03425 59 TAYLTKGHVLLSDMGRVLA--S-IVEDT--SGWHDALCGTSNAAL 98 (233)
T ss_pred CCCCCCCCEEEECCCCEEE--E-EECCC--CCCCCCCCCCCCHHH
T ss_conf 6115799985879997269--9-96567--767454576578778
No 149
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=36.37 E-value=35 Score=15.56 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=17.0
Q ss_pred HHHHHHHHHCCCCEEEEC---HHHHCCCCHHHHHHH
Q ss_conf 999999983799899934---265302220475421
Q gi|254780659|r 49 EKIFCEMMETGIDVITTG---NHVWDKREALVFSQR 81 (274)
Q Consensus 49 ~~~~~~l~~~GvDviT~G---NH~wd~kei~~~i~~ 81 (274)
.+-++.|.++|+|+|..- -|.=...|.+.++.+
T Consensus 225 ~eRa~~Lv~aGvDvivIDtAhGhs~~vi~~ik~ik~ 260 (467)
T pfam00478 225 LERAEALVEAGVDVIVIDSAHGHSEYVLEMIKWIKK 260 (467)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999987699889973445441889999999874
No 150
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=36.30 E-value=35 Score=15.56 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEE-ECCCCCCCCCCC
Q ss_conf 886789999999983799899934265302220475421893897-500798887540
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLR-PANYPPNTPGNG 99 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilR-P~N~p~~~PG~G 99 (274)
.|+| +..+++|.+.+++++..|-+.++ +..+++..++++- =|=.....||.-
T Consensus 13 DGvG--~~vv~~L~~~~v~viD~Gt~g~~---l~~~l~~~d~vIiVDAv~~g~~pG~i 65 (140)
T cd06070 13 DGFG--SCLAEALEQCGAPVFDGGLDGFG---LLSHLENYDIVIFIDVAVIDEDVGVF 65 (140)
T ss_pred CCHH--HHHHHHHHHCCCEEEEECCCHHH---HHHHHHCCCEEEEEEEECCCCCCCEE
T ss_conf 8689--99999998639859992585899---99998279989999511168998279
No 151
>PRK09213 purine operon repressor; Provisional
Probab=36.29 E-value=11 Score=18.86 Aligned_cols=10 Identities=50% Similarity=0.876 Sum_probs=3.1
Q ss_pred HCCCCEEEEE
Q ss_conf 4036728984
Q gi|254780659|r 189 ILDGGTGYIT 198 (274)
Q Consensus 189 ILp~GTayiT 198 (274)
|||||--|.|
T Consensus 97 iLPGGylYms 106 (274)
T PRK09213 97 ILPGGYLYLS 106 (274)
T ss_pred CCCCCCEEHH
T ss_conf 7667402102
No 152
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=35.93 E-value=35 Score=15.52 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=16.9
Q ss_pred HHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 988860998999917004788678999999998379989993
Q gi|254780659|r 24 RLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT 65 (274)
Q Consensus 24 ~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~ 65 (274)
++-.++++|.||+. |+.++.++.|.++|+.++++
T Consensus 57 ~~l~~~gv~~vI~~--------~iG~~a~~~L~~~GI~v~~~ 90 (103)
T cd00851 57 EFLADEGVDVVIVG--------GIGPRALNKLRNAGIKVYKG 90 (103)
T ss_pred HHHHHCCCCEEEEC--------CCCHHHHHHHHHCCCEEEEE
T ss_conf 99986599899978--------75988999999889999996
No 153
>pfam10761 DUF2590 Protein of unknown function (DUF2590). This family of proteins has no known function.
Probab=35.84 E-value=17 Score=17.60 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=12.8
Q ss_pred CCHHHHCCCCEEEEECCC
Q ss_conf 654564036728984056
Q gi|254780659|r 184 TADAQILDGGTGYITDLG 201 (274)
Q Consensus 184 TaD~rILp~GTayiTDvG 201 (274)
-.|+||.| ||+.++...
T Consensus 65 E~D~RivP-GTv~i~e~~ 81 (103)
T pfam10761 65 EDDVRLVP-GTVKITEES 81 (103)
T ss_pred ECCCCCCC-CEEEEEECC
T ss_conf 03664168-648999625
No 154
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=35.58 E-value=36 Score=15.48 Aligned_cols=129 Identities=15% Similarity=0.191 Sum_probs=70.6
Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCC----
Q ss_conf 9980898886099899991700478867899999999837998999342653022204754218938975007988----
Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPN---- 94 (274)
Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~---- 94 (274)
.+.+..|+++|.-++.|- -|-=+|.+.+++..++|++.|-+=+ -..|+.++-.+..-..-|-=+.+.
T Consensus 49 ~~~I~~l~~~~~~~~~iG------AGTVlt~e~~~~ai~aGA~FiVSP~---~~~~vi~~a~~~~i~~iPG~~TPsEi~~ 119 (206)
T PRK09140 49 FDSIAALVKALGDDALIG------AGTVLSPEQVDRLADAGGRLIVTPN---IDPEVIRRAVAYGMTVMPGVATPTEAFA 119 (206)
T ss_pred HHHHHHHHHHCCCCEEEE------EEECCCHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 999999999679865998------6204679999999985999999999---9899999999829965278599999999
Q ss_pred CCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 87540799984899289999960000588332598999999986341368998899962576228999999760895779
Q gi|254780659|r 95 TPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASL 174 (274)
Q Consensus 95 ~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsa 174 (274)
+--.|+.+ .|+-=.+.+|-.|++ .+.-||- .+. -|+--- --+.-++--|.-.|-+..
T Consensus 120 A~~~Ga~~------vKlFPA~~~Gp~~ik-al~~p~P------------~~~--~~~ptG--GV~~~N~~~~l~aGa~av 176 (206)
T PRK09140 120 ALRAGADA------LKLFPASQLGPAGIK-ALRAVLP------------PDV--PVFAVG--GVTPENLAPYLAAGAAGF 176 (206)
T ss_pred HHHCCCCE------EEECCHHCCCHHHHH-HHHCCCC------------CCC--EEEECC--CCCHHHHHHHHHCCCCEE
T ss_conf 99859871------565751105999999-9864389------------999--899537--988888999998699199
Q ss_pred EEECC
Q ss_conf 98069
Q gi|254780659|r 175 VVGTH 179 (274)
Q Consensus 175 VvGTH 179 (274)
-+|+-
T Consensus 177 G~Gs~ 181 (206)
T PRK09140 177 GLGSA 181 (206)
T ss_pred EECHH
T ss_conf 96065
No 155
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=35.55 E-value=36 Score=15.48 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=90.2
Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH--------------CCCCEEEE
Q ss_conf 926999-720276889999998089888609989999170047886789999999983--------------79989993
Q gi|254780659|r 1 MRLLFL-GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME--------------TGIDVITT 65 (274)
Q Consensus 1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~--------------~GvDviT~ 65 (274)
||||.- -|=+-.+|.+++.+.|.+ .+.+-.|--.-|.|+-|..||-..--++.+ .-+||+.+
T Consensus 1 M~ILlTNDDGi~a~Gi~~L~~~l~~---~~~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~~~~~~y~v~GTPaDCV~l 77 (255)
T PRK13935 1 MNILVTNDDGVTSKGILCLARYLSK---KHEVFVVAPEKEQSATGHAITLRVPLWAKKVDINERFEIYAVTGTPADCVKI 77 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHH
T ss_conf 9699970799897789999999852---9939999279987678656424887047874048884189936984899999
Q ss_pred CHHHHCCCCHHHHHHHCCC-EEEECCCCCCCCCCCEEEEECC----------CCC-EEEEEEEEHHHCCCCCCCCHHHHH
Q ss_conf 4265302220475421893-8975007988875407999848----------992-899999600005883325989999
Q gi|254780659|r 66 GNHVWDKREALVFSQRHCK-FLRPANYPPNTPGNGSGLYCAK----------NGS-NVLVANIMGRVFMNPLLDDPFRTA 133 (274)
Q Consensus 66 GNH~wd~kei~~~i~~~~~-ilRP~N~p~~~PG~G~~i~~~~----------~g~-ki~Vinl~Gr~fM~~~~d~PF~~~ 133 (274)
|=|. ++++.|. +|-=.|+-... |.- ++-+- .|. -||+-. . .+-++..+.-=+.+
T Consensus 78 al~~--------l~~~~pDLVvSGIN~G~Nl-G~d--v~YSGTVgAA~Eg~l~GipsIAvS~-~--~~~~~~~~~a~~~~ 143 (255)
T PRK13935 78 GYDV--------IMKKKPDLVISGINRGPNL-GTD--VLYSGTVSGALEGAIAGVPSIAISS-A--NFENPDYETAARFL 143 (255)
T ss_pred HHHH--------HCCCCCCEEEECCCCCCCC-CCC--EEECCHHHHHHHHHHCCCCEEEEEC-C--CCCCCCHHHHHHHH
T ss_conf 9864--------0589998899687488777-713--7720036778989754998699965-6--67887878999999
Q ss_pred HHHHHHCCCCC--CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCC
Q ss_conf 99986341368--9988999625762289999997608957799806976246545640367289840560137121035
Q gi|254780659|r 134 DKILATCPLKE--QADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIG 211 (274)
Q Consensus 134 d~~l~~~~~~~--~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG 211 (274)
-++++++..+. ...+.=|-|-+....| +.|---+-.|....-..-+.|+=|.|--|--=.|-.-..++--+
T Consensus 144 ~~ii~~~~~~~~p~~~~lNVN~P~~~~~~-------ikG~k~t~~g~r~~~~~~~~~~dp~g~~yyw~~g~~~~~~~~~~ 216 (255)
T PRK13935 144 LNFLEEFDFSLLPPFTALNINVPSVPYGE-------IKGWKLTRQSRRRYNDYFEERVDPFGNKYYWMMGEIIEDDPDDD 216 (255)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCC-------CCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf 99999998617984506864279997235-------88549966665336765057357999878986477677789989
Q ss_pred CCHHHHHHHHHHCCC
Q ss_conf 474678988851688
Q gi|254780659|r 212 LDKEEPINRFITQIP 226 (274)
Q Consensus 212 ~~~~~~i~rf~t~~p 226 (274)
-|....-+.|.+=.|
T Consensus 217 tD~~al~~gyISITP 231 (255)
T PRK13935 217 ADYKAVREGYVSVTP 231 (255)
T ss_pred CHHHHHHCCEEEEEE
T ss_conf 379999799099832
No 156
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=35.19 E-value=36 Score=15.44 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=5.4
Q ss_pred CHHHHHHHHHCCCCE
Q ss_conf 999999998379989
Q gi|254780659|r 48 TEKIFCEMMETGIDV 62 (274)
Q Consensus 48 t~~~~~~l~~~GvDv 62 (274)
|++.+++|.++|+|.
T Consensus 150 T~e~~~~L~~~Gad~ 164 (326)
T PRK05458 150 TPEAVRELENAGADA 164 (326)
T ss_pred CHHHHHHHHHCCCCE
T ss_conf 899999999749999
No 157
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=35.16 E-value=37 Score=15.44 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE---CCEECCCCCCCCHH----HHHHHHHCCCCEEEEC
Q ss_conf 89999998089888609989999---17004788678999----9999983799899934
Q gi|254780659|r 14 GRSIVYEMLPRLIRDFQLDFVIA---NGENSAGGFGITEK----IFCEMMETGIDVITTG 66 (274)
Q Consensus 14 Gr~~v~~~Lp~l~~~~~~DfvIa---NgENaa~G~Git~~----~~~~l~~~GvDviT~G 66 (274)
-.+.+.+.+..+|++...||+|. |++.-..| |+|.+ ++++|-++|+|.+-.+
T Consensus 186 R~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~~~-G~~~~e~~~~~~~l~~~GvD~i~vs 244 (353)
T cd02930 186 RMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG-GSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 8799999999999970998749997360126899-9899999999999998199999963
No 158
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.91 E-value=37 Score=15.41 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCC-CHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 9980898886099899991700478867899999999837998999342653022-204754218938975007988875
Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKR-EALVFSQRHCKFLRPANYPPNTPG 97 (274)
Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~k-ei~~~i~~~~~ilRP~N~p~~~PG 97 (274)
.+.+.++|++++..+++----|.---+|+ .+-++++.++|+|-+-.=+=-|+.. ++.+...+..-=+-++= ++.+|-
T Consensus 65 ~~~~~~~r~~~~~pivlM~Y~N~i~~~G~-e~F~~~~~~~Gv~GviipDLP~ee~~~~~~~~~~~~i~~I~lv-sPtt~~ 142 (242)
T cd04724 65 LELVKEIRKKNTIPIVLMGYYNPILQYGL-ERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLV-APTTPD 142 (242)
T ss_pred HHHHHHHHHCCCCCEEEEEECHHHHHHCH-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCH
T ss_conf 99999987347988899984457665289-9999999975997587069995784689999986598388996-898878
Q ss_pred CCE-EEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 407-9998489928999996000058833259899999998634136899889996257622899999976089577998
Q gi|254780659|r 98 NGS-GLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176 (274)
Q Consensus 98 ~G~-~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVv 176 (274)
.-. .+.....| =+-++..+|.+..+..+ + ..+.+.+++++.-.+.+ +.|-|-=-....-..+.-+.|| +|+
T Consensus 143 ~ri~~i~~~s~g-fiY~vs~~GvTG~~~~~--~-~~~~~~i~~ik~~t~~P-v~vGFGI~~~e~v~~~~~~aDG---vIV 214 (242)
T cd04724 143 ERIKKIAELASG-FIYYVSRTGVTGARTEL--P-DDLKELIKRIRKYTDLP-IAVGFGISTPEQAAEVAKYADG---VIV 214 (242)
T ss_pred HHHHHHHHHCCC-EEEEEECCCCCCCCCCC--H-HHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHCCE---EEE
T ss_conf 999999974798-49998577777877556--4-99999999998716897-4874387999999999965999---998
Q ss_pred EC
Q ss_conf 06
Q gi|254780659|r 177 GT 178 (274)
Q Consensus 177 GT 178 (274)
||
T Consensus 215 GS 216 (242)
T cd04724 215 GS 216 (242)
T ss_pred CH
T ss_conf 78
No 159
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=34.84 E-value=13 Score=18.39 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=20.0
Q ss_pred CCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 8875407999848992899999600005883325989999999863413
Q gi|254780659|r 94 NTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPL 142 (274)
Q Consensus 94 ~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~ 142 (274)
..+..||.++++..| |+|. ...+-|+.+.+.+++.+-
T Consensus 69 e~kr~~~iviTSDrG-------LcG~-----~Nsni~k~~~~~i~~~~~ 105 (287)
T COG0224 69 EVKRVLYIVITSDRG-------LCGG-----FNSNIFKKVENLIKELKN 105 (287)
T ss_pred CCCCEEEEEEECCCC-------HHHH-----HHHHHHHHHHHHHHHHHC
T ss_conf 788269999956853-------0100-----029999999999975032
No 160
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950 This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=34.56 E-value=37 Score=15.38 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-CCCCEEEECCEECCCCCCCCHHHHHHHHHCCCC-----EEEECHHHHCCCCHHHHHHHCC
Q ss_conf 99980898886-099899991700478867899999999837998-----9993426530222047542189
Q gi|254780659|r 18 VYEMLPRLIRD-FQLDFVIANGENSAGGFGITEKIFCEMMETGID-----VITTGNHVWDKREALVFSQRHC 83 (274)
Q Consensus 18 v~~~Lp~l~~~-~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvD-----viT~GNH~wd~kei~~~i~~~~ 83 (274)
+.+.|-+||+. |++-.| =-|.+.+.-+.|..+||+ |||++++-|.|+--.=|+.-..
T Consensus 118 ~~~~L~~LR~~Gy~Lg~i---------T~G~~~~Q~eKl~~lg~~~fFD~V~~s~e~g~~KPhP~IF~~Al~ 180 (244)
T TIGR02253 118 VVDTLMELRESGYRLGLI---------TDGLTVKQWEKLERLGIRDFFDAVITSEELGVEKPHPKIFYAALR 180 (244)
T ss_pred HHHHHHHHHHCCCEEEEE---------ECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 889999998647788998---------668778999999982775357705722444776978589999999
No 161
>PRK10490 sensor protein KdpD; Provisional
Probab=34.48 E-value=34 Score=15.66 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCCCEEEECC---EECCCCCCC-CHHHHHHHHHCCCCEEEECH--HHHCCCCHHHHH
Q ss_conf 0998999917---004788678-99999999837998999342--653022204754
Q gi|254780659|r 29 FQLDFVIANG---ENSAGGFGI-TEKIFCEMMETGIDVITTGN--HVWDKREALVFS 79 (274)
Q Consensus 29 ~~~DfvIaNg---ENaa~G~Gi-t~~~~~~l~~~GvDviT~GN--H~wd~kei~~~i 79 (274)
.+|+.+++-- -|+.|-+-- -.+..+||+++||||+|+=| |+=.-.|++.-|
T Consensus 101 r~P~~~lvDelahtn~pgsrh~kR~qdv~ell~aGi~V~tt~nvqhlesl~d~v~~i 157 (895)
T PRK10490 101 RRPALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGV 157 (895)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 399889973345669998877640764999997798385510156566567899986
No 162
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323 These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=33.91 E-value=38 Score=15.31 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=33.0
Q ss_pred HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 88609989999170047886789999999983799899
Q gi|254780659|r 26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI 63 (274)
Q Consensus 26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi 63 (274)
.+-|++|||++-=|=+-+|+=-=-..++...++||+=+
T Consensus 136 ~~GY~pD~vVatDdvpq~GRP~P~~alkNvieLGv~dv 173 (199)
T TIGR01422 136 LQGYKPDFVVATDDVPQAGRPYPFMALKNVIELGVDDV 173 (199)
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 47897664246622467889747899998987075221
No 163
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.59 E-value=39 Score=15.28 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECC
Q ss_conf 999999983799899934265302220475421893897500
Q gi|254780659|r 49 EKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPAN 90 (274)
Q Consensus 49 ~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N 90 (274)
.+..+++++.||+++-.=....+.+|......+-..+.+..|
T Consensus 23 ~~~~~~~l~~Gv~~vQlR~K~~~~~~~~~~a~~l~~i~~~~~ 64 (210)
T PRK00043 23 LEVVEAALAGGVTLVQLREKGADARERLELARALKALCRRYG 64 (210)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999999998699999992699899999999999999999809
No 164
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=33.59 E-value=39 Score=15.28 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=82.4
Q ss_pred CEEEEEEECCC----HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH--CCC--CEEEECHHHHCC
Q ss_conf 92699972027----6889999998089888609989999170047886789999999983--799--899934265302
Q gi|254780659|r 1 MRLLFLGDIVG----KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME--TGI--DVITTGNHVWDK 72 (274)
Q Consensus 1 MkiLfiGDIvG----~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~--~Gv--DviT~GNH~wd~ 72 (274)
|||.-|-|+=- .-....+...++.++ ...+|++|+.|.=+-.|.-.....+.+++. ..- -.+..|||--.-
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~-~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIE-QLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARV 79 (301)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 968998168877455655899999999736-6799989988746566665899999999974677887586389854544
Q ss_pred CCHHHHHHHCCCEEEECCCCCCCCC-CCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 2204754218938975007988875-407999848992899999600005883325989999999863413689988999
Q gi|254780659|r 73 REALVFSQRHCKFLRPANYPPNTPG-NGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVF 151 (274)
Q Consensus 73 kei~~~i~~~~~ilRP~N~p~~~PG-~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~V 151 (274)
..-..+. +.......... .... .++.+....... .. .-.|+ .-+.-|.-+++.+++.+.. ....+|
T Consensus 80 ~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~d~~~-~~--~~~G~-----~~~~q~~~l~~~l~~~~~~--~~~~~v 146 (301)
T COG1409 80 VNGEAFS-DQFFNRYAVLV--GACSSGGWRVIGLDSSV-PG--VPLGR-----LGAEQLDWLEEALAAAPER--AKDTVV 146 (301)
T ss_pred CCCHHHH-HHCCCCCHHHC--CCCCCCCEEEEEECCCC-CC--CCCCE-----ECHHHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 4432231-10145530101--02237866999731565-67--76877-----3588899999997752012--564069
Q ss_pred ECCCC--------------CHHHHHHHHHHHCCC-EEEEEECCCCCCCC
Q ss_conf 62576--------------228999999760895-77998069762465
Q gi|254780659|r 152 DFHAE--------------TTSEKQCFAHFVDSR-ASLVVGTHTHIPTA 185 (274)
Q Consensus 152 DfHaE--------------aTSEK~A~g~~lDGr-VsaVvGTHTHV~Ta 185 (274)
.+|=+ ..+....-..-.-++ |.+|+--|.|.+..
T Consensus 147 ~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~ 195 (301)
T COG1409 147 VLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQ 195 (301)
T ss_pred EEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 9844787777764013443243344567764478414999697445541
No 165
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II; InterPro: IPR011278 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH . This entry represents type I homodimeric citrate synthase enzymes (predominantly from Gram-positive bacteria and archaea), as well as 2-methylcitrate synthase; some enzyme in this entry may be bifunctional citrate synthase/2-methylcitrate synthase enzymes. Members of this family appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesise 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme . 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive . ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process, 0005737 cytoplasm.
Probab=33.40 E-value=14 Score=18.07 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=8.8
Q ss_pred HHHHHHHCCCEEEEC
Q ss_conf 047542189389750
Q gi|254780659|r 75 ALVFSQRHCKFLRPA 89 (274)
Q Consensus 75 i~~~i~~~~~ilRP~ 89 (274)
|+++.++++|||||-
T Consensus 355 ~~Eq~~e~NRLIRPr 369 (386)
T TIGR01800 355 IIEQYEENNRLIRPR 369 (386)
T ss_pred HHHHHHHCCCCCCCC
T ss_conf 454132056311775
No 166
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=33.24 E-value=39 Score=15.24 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=34.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 6999720276889999998089888609989999170047886789999999983799899934265
Q gi|254780659|r 3 LLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHV 69 (274)
Q Consensus 3 iLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~ 69 (274)
+|+|-|--|---=....+.++.||+++.+|.-|-= -+....|+..-.|-+-.++|||+|-+.-..
T Consensus 171 ~i~IKDmAGll~P~~a~~LV~~lk~~~g~d~pI~~--HtH~T~G~~~~~~l~AieAGvDivD~A~~~ 235 (499)
T PRK12330 171 SICIKDMAALLKPQPAYDLVKGIKEACGPDTRVHV--HAHATTGVTLVSLMKAIEAGVDVVDTAISS 235 (499)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE--ECCCCCCHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 89984753467889999999999986389983798--517887469999999998499887244543
No 167
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.22 E-value=33 Score=15.72 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=32.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH---CCCEEEECCCCC
Q ss_conf 47886789999999983799899934265302220475421---893897500798
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR---HCKFLRPANYPP 93 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~---~~~ilRP~N~p~ 93 (274)
+++.+||...+++.|.+.|.+|+-.+..-=..++..+.+++ ..-+.-+++...
T Consensus 14 aag~rGIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~ 69 (256)
T PRK08594 14 VANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELAETLEQQESLVLPCDVTS 69 (256)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99996399999999998799999974880669999999987079947999913899
No 168
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.19 E-value=39 Score=15.24 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=41.2
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHH-----HHHCCCCEEEECHHHHCCCCHH
Q ss_conf 99720276889999998089888609989999170047886789999999-----9837998999342653022204
Q gi|254780659|r 5 FLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCE-----MMETGIDVITTGNHVWDKREAL 76 (274)
Q Consensus 5 fiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~-----l~~~GvDviT~GNH~wd~kei~ 76 (274)
|=.-+.|+-..+.+++.+.+--+++++|.+|+-.--+|. |-.+.-.. .+...++||-.-=..|.++|..
T Consensus 60 ~~~~~L~~gt~e~v~~~i~~~~~~~~P~~ilv~~scTs~---liQed~g~la~~a~~~~~~~vi~~~~~~y~~~E~~ 133 (510)
T CHL00076 60 VDRHVLARGSQEKVVDNITRKDKEEQPDLILLTPTCTSS---ILQEDLQNFVDRASMDSDSDVILADVNHYRVNELQ 133 (510)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHH---HHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHH
T ss_conf 001223677479999999998523088469975741188---76433455543113578987454567622466777
No 169
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.15 E-value=39 Score=15.23 Aligned_cols=12 Identities=0% Similarity=0.130 Sum_probs=5.5
Q ss_pred HHHHHHHHHHCC
Q ss_conf 467898885168
Q gi|254780659|r 214 KEEPINRFITQI 225 (274)
Q Consensus 214 ~~~~i~rf~t~~ 225 (274)
.+.++++.+...
T Consensus 174 i~~av~~~r~~~ 185 (277)
T PRK08072 174 ITKAVTSVREKL 185 (277)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999865
No 170
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=32.87 E-value=17 Score=17.59 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=14.9
Q ss_pred CCEEEECHHHHCCCCHHHHHH
Q ss_conf 989993426530222047542
Q gi|254780659|r 60 IDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 60 vDviT~GNH~wd~kei~~~i~ 80 (274)
-++++.|-|.+=+++.++.+.
T Consensus 28 N~~~S~G~~~~Wr~~~v~~l~ 48 (239)
T PRK00216 28 NDLLSFGLHRVWRRKTIKWLG 48 (239)
T ss_pred HHHHCCCHHHHHHHHHHHHCC
T ss_conf 667507519999999998627
No 171
>pfam08267 Meth_synt_1 Cobalamin-independent synthase, N-terminal domain. The N-terminal domain and C-terminal domains of cobalamin-independent synthases together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilize a loop from the C-terminal domain.
Probab=32.64 E-value=25 Score=16.49 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHH-CC
Q ss_conf 478867899999999837998999342653-02
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVW-DK 72 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~w-d~ 72 (274)
.+.+.-+..++.+...++|+|.|+.|+-+| |+
T Consensus 34 ~~~a~~lr~~~w~~q~~aGid~Ip~~dFS~YD~ 66 (310)
T pfam08267 34 LEVAKELRLKHWKLQKEAGIDLIPVGDFSWYDH 66 (310)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 999999999999999986998551387515899
No 172
>KOG3669 consensus
Probab=32.48 E-value=40 Score=15.16 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=77.4
Q ss_pred HHHHCCCCEEEE------CHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCC
Q ss_conf 998379989993------42653022204754218938975007988875407999848992899999600005883325
Q gi|254780659|r 54 EMMETGIDVITT------GNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLD 127 (274)
Q Consensus 54 ~l~~~GvDviT~------GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d 127 (274)
.|-..|-|+|-+ |.--|-.-+.-......---+-. +..+.-+. +..+|.++.|-. +| +
T Consensus 477 ~l~~~g~d~i~~~~~~~~g~~~Wt~~~lw~c~A~~~~svdc-----gn~~~w~~--~~~sg~~~~v~~-------~p--l 540 (705)
T KOG3669 477 ALDSLGQDFIRTLSKSCPGGMHWTRLDLWQCGAVKLTSVDC-----GNQHIWAC--DSRSGVYFRVGT-------QP--L 540 (705)
T ss_pred HHHHHCCEEEECCCCCCCCCCEEEECCHHHHHHHHEEEECC-----CCCCCEEE--ECCCCCEEEECC-------CC--C
T ss_conf 67651311786036789776205652355541422367503-----67640676--136871697127-------76--8
Q ss_pred CHHHHHHH-HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH
Q ss_conf 98999999-98634136899889996257622899999976089577998069762465456403672898405601371
Q gi|254780659|r 128 DPFRTADK-ILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY 206 (274)
Q Consensus 128 ~PF~~~d~-~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~ 206 (274)
+|-...++ ++++.++...+.+ +|.||. |-|-+|+||+|.| -.-|+-|.=....+=|+|..+|-|.--..
T Consensus 541 ~~~~ml~~~~~k~~~~Q~~avf-~vs~~s---s~k~~~aw~~d~~------p~~~~~~~ite~~wv~saw~~~~~~~~~s 610 (705)
T KOG3669 541 NPSLMLPAWIMKEPPVQPAAVF-LVSVHS---SPKDQMAWVLDSR------PNVHVRTGITEEMWVGSAWEHVPGLQACS 610 (705)
T ss_pred CHHHCCHHHHHHCCCCCCCEEE-EEEECC---CCCCCCEEEECCC------CCCCCCCCCCCCEECCCCCCCCCCHHHHH
T ss_conf 7222116677533466520499-999615---8665111000158------99754565221056033124577757752
Q ss_pred HHCCC-----CCHHHHHHH
Q ss_conf 21035-----474678988
Q gi|254780659|r 207 NSSIG-----LDKEEPINR 220 (274)
Q Consensus 207 ~SVIG-----~~~~~~i~r 220 (274)
.+.=+ ..|+....|
T Consensus 611 ~~~d~~t~~~~~p~G~a~r 629 (705)
T KOG3669 611 LALDTRTVWARCPNGDAAR 629 (705)
T ss_pred CCCCCEEEEEECCCCHHHH
T ss_conf 1567416998678834664
No 173
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=32.04 E-value=41 Score=15.12 Aligned_cols=56 Identities=23% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCC-EEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHC-CCCHHHHHHH
Q ss_conf 999808988860998-999917004788678999999998379989993426530-2220475421
Q gi|254780659|r 18 VYEMLPRLIRDFQLD-FVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD-KREALVFSQR 81 (274)
Q Consensus 18 v~~~Lp~l~~~~~~D-fvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd-~kei~~~i~~ 81 (274)
+.+.+..+|+..... .|.+-.|| -+.+.+..++|+|+|-+-|-.-+ =++...++.+
T Consensus 66 ~~~~i~~~~~~~~~~~~I~VEv~t--------l~e~~~a~~~~~d~I~LDn~spe~l~~~v~~l~~ 123 (169)
T pfam01729 66 ITEAVRRAREVAPFAVKIEVEVEN--------LEELEEALEAGADIIMLDNFSPEEVREAVEELDE 123 (169)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEH--------HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999999999967999709999601--------9989999846998999779999999999999997
No 174
>TIGR02683 upstrm_HI1419 probable addiction module killer protein; InterPro: IPR014056 Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module..
Probab=31.97 E-value=38 Score=15.33 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=16.3
Q ss_pred CCCCEEEEECCCCCEEEEEEEEH
Q ss_conf 75407999848992899999600
Q gi|254780659|r 96 PGNGSGLYCAKNGSNVLVANIMG 118 (274)
Q Consensus 96 PG~G~~i~~~~~g~ki~Vinl~G 118 (274)
-|.||+||-...|. ..|+=|.|
T Consensus 54 ~GpGYRvYf~~~G~-~~ilLLcG 75 (95)
T TIGR02683 54 YGPGYRVYFTQRGK-VIILLLCG 75 (95)
T ss_pred CCCCEEEEEEEECC-EEEEEECC
T ss_conf 69964688764488-88998518
No 175
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=31.90 E-value=41 Score=15.10 Aligned_cols=48 Identities=10% Similarity=0.245 Sum_probs=25.5
Q ss_pred HHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 898886099899991700478867899999999837998999342653022
Q gi|254780659|r 23 PRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKR 73 (274)
Q Consensus 23 p~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~k 73 (274)
...-.+.+||+|++-|.-.+- +...++....+.-+==|-.|..+||..
T Consensus 81 ~~~l~~~kPD~VlV~GDr~e~---la~Alaa~~~~Ipi~HiegG~rs~~~~ 128 (363)
T cd03786 81 EAVLLEEKPDLVLVLGDTNET---LAAALAAFKLGIPVAHVEAGLRSFDRG 128 (363)
T ss_pred HHHHHHHCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 999997299999994888428---799999998198189962643347679
No 176
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=31.82 E-value=38 Score=15.30 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=41.0
Q ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCE-----------ECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf 720276889999998089888609989999170-----------047886789999999983799899934265302220
Q gi|254780659|r 7 GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGE-----------NSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREA 75 (274)
Q Consensus 7 GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgE-----------Naa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei 75 (274)
+-.-|+...+.++..+.+--++++||.+|+-.- |.+.+.|+ .++||-..=..|..+|.
T Consensus 62 ~rdLgr~t~el~~~~~~~a~~~~~P~~ivv~~SCta~liQedp~~la~~~~l-----------~~~vi~~e~~~y~~~E~ 130 (524)
T PRK02910 62 ARDLGRGTAELVKDTIRRADERFQPDLIVVGPSCTAELLQEDPGGLAKGAGL-----------PIPVLVLELNAYRVKEN 130 (524)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC-----------CCCEEECCCCCCCHHHH
T ss_conf 4440565078889999998544298579985400698875461122334699-----------98644555772105678
Q ss_pred H
Q ss_conf 4
Q gi|254780659|r 76 L 76 (274)
Q Consensus 76 ~ 76 (274)
.
T Consensus 131 ~ 131 (524)
T PRK02910 131 W 131 (524)
T ss_pred H
T ss_conf 8
No 177
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=31.41 E-value=42 Score=15.05 Aligned_cols=16 Identities=13% Similarity=0.274 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHCCCC
Q ss_conf 4746789888516886
Q gi|254780659|r 212 LDKEEPINRFITQIPR 227 (274)
Q Consensus 212 ~~~~~~i~rf~t~~p~ 227 (274)
.+....+.+++...|.
T Consensus 168 ~~~~~~v~~~k~~~~~ 183 (272)
T cd01573 168 PEPLKALARLRATAPE 183 (272)
T ss_pred CHHHHHHHHHHHHCCC
T ss_conf 3299999999862999
No 178
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.41 E-value=42 Score=15.05 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=66.5
Q ss_pred HHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCC----C
Q ss_conf 980898886099899991700478867899999999837998999342653022204754218938975007988----8
Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----T 95 (274)
Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~----~ 95 (274)
+.+.+++++| +|++|- -|-=+|.+.+++..++|++.|-+=+ -.+|+..+-.+..-..-|-=+.+. +
T Consensus 53 ~~I~~l~~~~-p~~~iG------aGTV~~~e~~~~a~~aGA~FiVSP~---~~~~vi~~a~~~~i~~iPGv~TpsEi~~A 122 (210)
T PRK07455 53 ELISQLREKL-PECIIG------TGTLLTLEDLEEAIAAGAQFCFTPH---VDLELIQAAVAADIPIIPGALTPTEIVTA 122 (210)
T ss_pred HHHHHHHHHC-CCCEEE------EEECCCHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCCEECCCCCHHHHHHH
T ss_conf 9999999878-996898------8818789999999986999998688---88999999998299765886999999999
Q ss_pred CCCCEEEEECCCCCEEEEEEEE-HHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 7540799984899289999960-000588332598999999986341368998899962576228999999760895779
Q gi|254780659|r 96 PGNGSGLYCAKNGSNVLVANIM-GRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASL 174 (274)
Q Consensus 96 PG~G~~i~~~~~g~ki~Vinl~-Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsa 174 (274)
--.|+.+ .|+-=.+.+ |--|++ .+.-||..+ + |+=- +-- +..++-.|.-.|-+.+
T Consensus 123 ~~~G~~~------vKlFPA~~~GG~~ylk-al~~p~p~i-------------~--~~pt-GGV-~~~n~~~yl~ag~~~v 178 (210)
T PRK07455 123 WQAGASC------VKVFPVQAVGGADYIK-SLQGPLGHI-------------P--LIPT-GGV-TLENAQAFIQAGAIAV 178 (210)
T ss_pred HHCCCCE------EEECCCHHCCCHHHHH-HHHCCCCCC-------------C--EEEC-CCC-CHHHHHHHHHCCCEEE
T ss_conf 9869984------7750513206799999-986548999-------------3--8878-998-9888999996899799
Q ss_pred EEECC
Q ss_conf 98069
Q gi|254780659|r 175 VVGTH 179 (274)
Q Consensus 175 VvGTH 179 (274)
.+|+-
T Consensus 179 g~Gs~ 183 (210)
T PRK07455 179 GLSSQ 183 (210)
T ss_pred EECHH
T ss_conf 98846
No 179
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=31.30 E-value=35 Score=15.54 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCEEEECC---EECCCCCCC-CHHHHHHHHHCCCCEEEECH--HHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEE
Q ss_conf 998999917---004788678-99999999837998999342--653022204754218938975007988875407999
Q gi|254780659|r 30 QLDFVIANG---ENSAGGFGI-TEKIFCEMMETGIDVITTGN--HVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLY 103 (274)
Q Consensus 30 ~~DfvIaNg---ENaa~G~Gi-t~~~~~~l~~~GvDviT~GN--H~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~ 103 (274)
+|.+|.+.- -|+.+-+-- -.+..+||+++|+||.|+=| |.=.=.|++.-|-. +--- +..|-+ +|
T Consensus 100 ~P~lvLvDELAHTNa~gsrh~KR~qDiEelL~aGIDV~TT~NvQHlESLnDvV~~iTg---v~Vr----E~VPD~---v~ 169 (890)
T COG2205 100 RPALVLVDELAHTNAPGSRHPKRWQDIEELLAAGIDVYTTVNVQHLESLNDVVAGITG---VRVR----ETVPDR---VF 169 (890)
T ss_pred CCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCC---EEEE----EECCHH---HH
T ss_conf 9978985143304898888830354099999769806774005557678889986367---0774----027806---75
Q ss_pred ECCCCCEEEEEEE----------EHHHCCC----CCCCCHHH--------------HHHHHHHHCC---C-------CCC
Q ss_conf 8489928999996----------0000588----33259899--------------9999986341---3-------689
Q gi|254780659|r 104 CAKNGSNVLVANI----------MGRVFMN----PLLDDPFR--------------TADKILATCP---L-------KEQ 145 (274)
Q Consensus 104 ~~~~g~ki~Vinl----------~Gr~fM~----~~~d~PF~--------------~~d~~l~~~~---~-------~~~ 145 (274)
...+ .+-++-+ -|.++.. ..++|-|+ ++|++=++.. . +.-
T Consensus 170 d~AD--~v~lVDi~P~~L~~RL~~GKVY~~~~a~~A~~nFF~~~NL~aLRElALRr~AdrVd~~~~~~~~~~~~~~~~~~ 247 (890)
T COG2205 170 DEAD--EVELVDIPPDDLRERLKEGKVYAPEQAERALENFFRKGNLTALRELALRRTADRVDDQLRAYRRHKGIEGVWAA 247 (890)
T ss_pred CCCC--EEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 6457--17996188799999997588237789999999763203079999999999999886889987632455465566
Q ss_pred CCEEEEECCCCCHHHHH-----HHHHHHCCCEEEEEE
Q ss_conf 98899962576228999-----999760895779980
Q gi|254780659|r 146 ADVIVFDFHAETTSEKQ-----CFAHFVDSRASLVVG 177 (274)
Q Consensus 146 ~~~i~VDfHaEaTSEK~-----A~g~~lDGrVsaVvG 177 (274)
.+-|+|-+-+...|||. -++..+.++-+||+=
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v 284 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYV 284 (890)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 5618999789986389999999999972897699998
No 180
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.20 E-value=42 Score=15.03 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEC---CEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCE
Q ss_conf 02768899999980898886099899991---700478867899999999837998999342653022204754218938
Q gi|254780659|r 9 IVGKTGRSIVYEMLPRLIRDFQLDFVIAN---GENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKF 85 (274)
Q Consensus 9 IvG~~Gr~~v~~~Lp~l~~~~~~DfvIaN---gENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~i 85 (274)
..|-|..+.-.+.|..|. +. +|++=.- .+=.|.|-=| ++..++-++.|.+ . ..+++.
T Consensus 12 taG~P~~e~s~~~l~~l~-~~-aDiiElGiPfSDPvADGpvI-q~A~~~Al~~g~~-------~------~~i~~~---- 71 (247)
T PRK13125 12 TAGWPNAETFLEAIDGLV-GL-VDFLELGIPPKNPKYDGPVI-RKAHREVSYWGLD-------Y------WSLLEE---- 71 (247)
T ss_pred ECCCCCHHHHHHHHHHHH-HC-CCEEEECCCCCCCCCCHHHH-HHHHHHHHHCCCC-------H------HHHHHH----
T ss_conf 183799899999999986-47-99999799889876660999-9999999876998-------9------999998----
Q ss_pred EEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHH-HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHH
Q ss_conf 97500798887540799984899289999960000588332598999-999986341368998-8999625762289999
Q gi|254780659|r 86 LRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRT-ADKILATCPLKEQAD-VIVFDFHAETTSEKQC 163 (274)
Q Consensus 86 lRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~-~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A 163 (274)
+|- +...++ ++|. ++ |||.. .++++++++. ...| +|++|.--|...|..-
T Consensus 72 ~r~-----------------~~~~pi--------vlM~-Y~-N~~~~g~e~F~~~~~~-~GvdGvIipDLP~e~~ee~~~ 123 (247)
T PRK13125 72 VRK-----------------KVGVPT--------YIMT-YL-EDYVGSLDDLLNTAKE-VGARGVLFPDLLIDFPDELEK 123 (247)
T ss_pred HCC-----------------CCCCCE--------EEHH-HH-HHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHH
T ss_conf 505-----------------689988--------9729-88-9999769999999998-599758833888754678999
Q ss_pred HHHHHC--CCEEEEEECCCCCCCCHHHHC-----CCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHH
Q ss_conf 997608--957799806976246545640-----367289840560137121035474678988851
Q gi|254780659|r 164 FAHFVD--SRASLVVGTHTHIPTADAQIL-----DGGTGYITDLGMCGDYNSSIGLDKEEPINRFIT 223 (274)
Q Consensus 164 ~g~~lD--GrVsaVvGTHTHV~TaD~rIL-----p~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t 223 (274)
+.-.+. |-..--+=+-| |.++||- ..|=-|++=.|-||.. .-.+.+..+++.+.
T Consensus 124 ~~~~~~~~gl~~I~lvsPt---t~~~ri~~i~~~s~gFvY~~~~gvTG~~---~~~~~~~~i~~ik~ 184 (247)
T PRK13125 124 YVELIRRYGLAPVFFTSPK---FPDRLIRRLSKLSPLFIYLGLYPATGVE---LPVYVERNIKRVRE 184 (247)
T ss_pred HHHHHHHCCCCEEEEECCC---CCHHHHHHHHHHCCCEEEEEEECCCCCC---CCCCHHHHHHHHHH
T ss_conf 9999997698469995799---8199999999868977999944367887---73259999999998
No 181
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=30.75 E-value=43 Score=14.98 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=44.4
Q ss_pred EEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC---CH
Q ss_conf 99999600005883325989999999863413689988999-625762289999997608957799806976246---54
Q gi|254780659|r 111 VLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVF-DFHAETTSEKQCFAHFVDSRASLVVGTHTHIPT---AD 186 (274)
Q Consensus 111 i~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~V-DfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~T---aD 186 (274)
+.+.++-+ .+...+|+|-. .|+++ .++|+++. -.|-..|.|---.+.- .|--+.+++.++--+. =.
T Consensus 24 v~~~~~pe--~l~e~Ie~pee----~Lp~~---~~~Dl~i~y~lhPDl~~~l~~~~~e-~g~kalIvp~~~~~g~~~~lk 93 (215)
T pfam02593 24 VIVLEYPE--ELPEFIEDPEE----YLPEI---PEADLVIAYGLHPDLTLELAEIAAE-TGIKALIVPAEAPKGLRKGLK 93 (215)
T ss_pred EEEEECCC--CCCCCCCCHHH----HCCCC---CCCCEEEEECCCCCHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHH
T ss_conf 99961776--46432368788----65667---7876899943595079999999986-499889974688621289999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHC
Q ss_conf 56403672898405601371210354746789888516
Q gi|254780659|r 187 AQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQ 224 (274)
Q Consensus 187 ~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~ 224 (274)
.++-.-|-.+...-=||--.- ...+.|++|...
T Consensus 94 ~~~e~~g~~~~~P~~~CsL~~-----~~~p~i~~F~~~ 126 (215)
T pfam02593 94 EQLEEFGVEVEFPEPFCSLEP-----VGNPVIDEFAER 126 (215)
T ss_pred HHHHHCCCEEECCCCCCCCCC-----CCCHHHHHHHHH
T ss_conf 999975973877876557889-----888669999998
No 182
>KOG0884 consensus
Probab=30.37 E-value=44 Score=14.94 Aligned_cols=74 Identities=27% Similarity=0.379 Sum_probs=44.2
Q ss_pred ECHHHHCCC---CHHHHHHHCCC-EEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 342653022---20475421893-89750079888754079998489928999996000058833259899999998634
Q gi|254780659|r 65 TGNHVWDKR---EALVFSQRHCK-FLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATC 140 (274)
Q Consensus 65 ~GNH~wd~k---ei~~~i~~~~~-ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~ 140 (274)
+||-+|-+| |..+|+...-| ++--+|--+.+-|.-+.|--.+ -.-+.+-=.+|= . +-+-|.+.|+ |+.+
T Consensus 62 gg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~k----q~hldmkytvfg-k-vidg~etlde-le~l 134 (161)
T KOG0884 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK----QPHLDMKYTVFG-K-VIDGLETLDE-LEKL 134 (161)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECC----CCCCCEEEEEEE-E-ECCCHHHHHH-HHHC
T ss_conf 8754248743288999875063106871327999887568999357----766430566541-0-0021554778-8525
Q ss_pred CCCCC
Q ss_conf 13689
Q gi|254780659|r 141 PLKEQ 145 (274)
Q Consensus 141 ~~~~~ 145 (274)
+..++
T Consensus 135 ~v~~k 139 (161)
T KOG0884 135 PVNEK 139 (161)
T ss_pred CCCCC
T ss_conf 66753
No 183
>TIGR01704 MTA/SAH-Nsdase MTA/SAH nucleosidase; InterPro: IPR010049 This entry represents the enzyme 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase which acts on its two substrates at the same active site. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulphur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria , ,]. This enzyme is widely distributed in bacteria. ; GO: 0008782 adenosylhomocysteine nucleosidase activity, 0008930 methylthioadenosine nucleosidase activity, 0009164 nucleoside catabolic process, 0019509 methionine salvage.
Probab=30.21 E-value=33 Score=15.69 Aligned_cols=50 Identities=28% Similarity=0.445 Sum_probs=36.6
Q ss_pred HHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC
Q ss_conf 898886099899991700478867899999999837998999342653022204754218
Q gi|254780659|r 23 PRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH 82 (274)
Q Consensus 23 p~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~ 82 (274)
..|-++|+||+||--| ||||+--|-+. =|++-+-+-=|+.-|+-.|==++
T Consensus 59 TLLL~~~KPD~~INTG--SAGGl~~TL~V--------GD~V~S~~~R~HD~DVTAF~YEY 108 (229)
T TIGR01704 59 TLLLDRYKPDVVINTG--SAGGLAHTLKV--------GDVVVSDDVRYHDVDVTAFDYEY 108 (229)
T ss_pred HHHHHCCCCCEEEECC--CCCCCCCCCCC--------CCEEEECCCEECCCCEEECCCCC
T ss_conf 8887507997698588--75442331320--------56787167402143013205544
No 184
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.94 E-value=44 Score=14.89 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=46.3
Q ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf 999720276-88999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r 4 LFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274)
Q Consensus 4 LfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274)
|-+=|.-|. .|+..-.+.+.++++...+.+-+ |-|| +.+.+++++++|+|-+..|--++.+++.+.-+-+
T Consensus 49 lHvVDLdgA~~g~~~n~~~I~~i~~~~~~~iqv--------GGGIRs~e~i~~~l~~G~~rViigT~a~~~~~~l~~~~~ 120 (234)
T PRK13587 49 IHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEV--------GGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAH 120 (234)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 999978764689743799999998437986798--------465475999999997689999988813028699999998
No 185
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.51 E-value=38 Score=15.34 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCCC
Q ss_conf 478867899999999837998999342653022204754218-93897500798
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYPP 93 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p~ 93 (274)
++++.||...+++.|-+.|++|+-..+--=..++..+..++. ..+.-|++...
T Consensus 15 aa~~~GIG~aiA~~La~~GA~V~i~~~~e~~~~~~~~~~~~~g~~~~~~~Dvsd 68 (271)
T PRK06505 15 VANDHSIAWGIAKQLAAQGAELAFTYQGDALGKRVKPLAESLGSDLVLPCDVED 68 (271)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999854999999999986999999818668899999999964981899837999
No 186
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.04 E-value=46 Score=14.79 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=31.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCCC
Q ss_conf 478867899999999837998999342653022204754218-93897500798
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYPP 93 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p~ 93 (274)
+|+++||...+++.|.+.|.+|+-....-=.++++.+..++. ...+.+++...
T Consensus 13 aag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvs~ 66 (274)
T PRK08415 13 VANNKSIAYGIAKACFEQGAELAFTYLNDALKKRVEPIAQELGSPYVYELDVSK 66 (274)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999837999999999986999999848878999999999862997699902899
No 187
>PRK13136 consensus
Probab=28.70 E-value=47 Score=14.75 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=41.2
Q ss_pred HCCCCCCCCHHHHHHHHHHHCCCCCCCC-EEEEECCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHH---CCCCE
Q ss_conf 0588332598999999986341368998-8999625762289999997608-95779980697624654564---03672
Q gi|254780659|r 120 VFMNPLLDDPFRTADKILATCPLKEQAD-VIVFDFHAETTSEKQCFAHFVD-SRASLVVGTHTHIPTADAQI---LDGGT 194 (274)
Q Consensus 120 ~fM~~~~d~PF~~~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A~g~~lD-GrVsaVvGTHTHV~TaD~rI---Lp~GT 194 (274)
++|. +++.-|+.-++++++.+. ...| .|++|+--|...|=.....-.+ -.+..| +- .|.|+|| ....+
T Consensus 92 vlM~-Y~N~i~~~G~~f~~~~~~-~GvdGlIipDLP~eE~~~~~~~~~~~~i~~I~li--aP---tt~~eRi~~i~~~a~ 164 (253)
T PRK13136 92 ILFT-YFNPLLAAGDKIYQQMKS-AGVDGCLVVDLPVEEAAPHLTACKTAKIAPILLI--SP---STTQERLKKINEHGE 164 (253)
T ss_pred EEEC-CCHHHHHHHHHHHHHHHH-CCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEE--CC---CCCHHHHHHHHHCCC
T ss_conf 9986-517999979999999997-4987200678997776999999997588712552--68---998899999996089
Q ss_pred E---EEECCCCCCCHHHCCCCCHHHHHHHH
Q ss_conf 8---98405601371210354746789888
Q gi|254780659|r 195 G---YITDLGMCGDYNSSIGLDKEEPINRF 221 (274)
Q Consensus 195 a---yiTDvGMtG~~~SVIG~~~~~~i~rf 221 (274)
+ |++=.|-||..... -.+-+..+++.
T Consensus 165 gFiY~vs~~GvTG~~~~~-~~~~~~~i~~i 193 (253)
T PRK13136 165 GMLYYVCRPGTTGVRATL-PENFPAKMNQI 193 (253)
T ss_pred CEEEEEECCCCCCCCCCC-HHHHHHHHHHH
T ss_conf 819998555236876446-38899999999
No 188
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=28.65 E-value=47 Score=14.75 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 598999999986341
Q gi|254780659|r 127 DDPFRTADKILATCP 141 (274)
Q Consensus 127 d~PF~~~d~~l~~~~ 141 (274)
+|-.+-+-++++.+.
T Consensus 199 eNR~Rf~~Eii~aIR 213 (338)
T cd02933 199 ENRARFLLEVVDAVA 213 (338)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999899999999999
No 189
>PRK13124 consensus
Probab=28.38 E-value=47 Score=14.72 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCC----CEEEEECCCCCEEEEEEEEHHH
Q ss_conf 678999999998379989993426530222047542189389750079888754----0799984899289999960000
Q gi|254780659|r 45 FGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGN----GSGLYCAKNGSNVLVANIMGRV 120 (274)
Q Consensus 45 ~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~----G~~i~~~~~g~ki~Vinl~Gr~ 120 (274)
.-.|.+.++.|.+.|+|+|-.|=--=|-.- +-| +++-++.-.-.-|. -+.+...-. .+.- .--+
T Consensus 22 ~e~s~~~~~~l~~~GaDiiElGiPfSDP~A------DGp-vIq~A~~~AL~~G~~~~~~~~~~~~~r-~~~~----~piv 89 (257)
T PRK13124 22 PETTIDLVLALEEAGADILELGIPYSDPLA------DGP-VIQRASKRALNGGMNIVKAMELVGKMR-KKVT----IPIV 89 (257)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCC------CCH-HHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCC----CCEE
T ss_conf 899999999999769999997898888776------579-999999999976996899999999852-4478----8889
Q ss_pred CCCCCCCCHH--HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHC---CC--C
Q ss_conf 5883325989--999999863413689988999625762289999997608957799806976246545640---36--7
Q gi|254780659|r 121 FMNPLLDDPF--RTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQIL---DG--G 193 (274)
Q Consensus 121 fM~~~~d~PF--~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rIL---p~--G 193 (274)
+|. + -||+ .-.++++++.....-.-.|++|+--|-..|=...+.-.+=..--.+ + ||.|+||- .. |
T Consensus 90 lM~-Y-~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lv-a----PTs~~Ri~~i~~~s~g 162 (257)
T PRK13124 90 YFT-Y-YNPVLQYGLEKFFALARENGIDGLLIPDLPLEESGELQEICDKYGIYLIPLV-A----PTSKERIKKIAEQAEG 162 (257)
T ss_pred EEE-H-HHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEE-C----CCCHHHHHHHHHCCCC
T ss_conf 975-0-0789875799999999975998477789997999999999986687357884-7----9967999999854898
Q ss_pred EEE-EECCCCCCCHHHCCCCCHHHHHHHHH
Q ss_conf 289-84056013712103547467898885
Q gi|254780659|r 194 TGY-ITDLGMCGDYNSSIGLDKEEPINRFI 222 (274)
Q Consensus 194 Tay-iTDvGMtG~~~SVIG~~~~~~i~rf~ 222 (274)
=-| ++=.|-||..... ..+-+..+++.+
T Consensus 163 FiY~vs~~GvTG~~~~~-~~~~~~~i~~ik 191 (257)
T PRK13124 163 FVYCVSSLGVTGVREEI-ETDLEEFIRTVK 191 (257)
T ss_pred CEEEEECCCCCCCCCCC-HHHHHHHHHHHH
T ss_conf 38996246667876556-088999999998
No 190
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=28.26 E-value=33 Score=15.75 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 9999980898886099899991700478867899999999837998999342
Q gi|254780659|r 16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN 67 (274)
Q Consensus 16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN 67 (274)
+-+++.|.++-..-.-+.++.++ |.+=..-...-|++.|=.+|+.-+
T Consensus 3 ~e~e~~la~~~~~~~~~~i~~~s-----gt~A~~~~~~~l~~~gd~vi~~~~ 49 (170)
T cd01494 3 EELEEKLARLLQPGNDKAVFVPS-----GTGANEAALLALLGPGDEVIVDAN 49 (170)
T ss_pred HHHHHHHHHHHCCCCCEEEEECH-----HHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999984899898999566-----999999999997279999998268
No 191
>COG2720 Uncharacterized vancomycin resistance protein [Defense mechanisms]
Probab=27.90 E-value=48 Score=14.67 Aligned_cols=45 Identities=27% Similarity=0.589 Sum_probs=24.1
Q ss_pred HHHCCCCEEEECCEECCC-CCCCCH---HHHHHHHHCCCCEEEECHHHH
Q ss_conf 886099899991700478-867899---999999837998999342653
Q gi|254780659|r 26 IRDFQLDFVIANGENSAG-GFGITE---KIFCEMMETGIDVITTGNHVW 70 (274)
Q Consensus 26 ~~~~~~DfvIaNgENaa~-G~Git~---~~~~~l~~~GvDviT~GNH~w 70 (274)
++-|..-.+|+|||-+.+ |-||.+ -+++.+..+|.-+++--||++
T Consensus 214 ~~Gfv~g~iI~gg~~~~GvGGGICQvStTlfna~~~AGL~iVeR~~HSy 262 (376)
T COG2720 214 ANGFVEGPIISGGESDSGVGGGICQVSTTLFNAVYQAGLPIVERNNHSY 262 (376)
T ss_pred HCCCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHHHCCCHHHEECCCCC
T ss_conf 2087434177788160356751205578999998855841311156653
No 192
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=27.65 E-value=49 Score=14.64 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=32.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT 65 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~ 65 (274)
+||+|.|---=. -.+.+...|.++++++ +|.|++.|-.+ +|.-.-..+.=.+.||++|.-
T Consensus 4 ~~V~~~Ggrd~~-D~~~i~~~Ld~~~~~~-pd~vlihGG~~---kGad~lA~~WA~~~gv~~i~f 63 (71)
T pfam10686 4 TRVAFSGGRDFN-DHRLIWDALDKVHARH-PDMVLLHGGAP---KGAERIAARWARRRGVPQVAF 63 (71)
T ss_pred CEEEEEECCCCC-HHHHHHHHHHHHHHHC-CCEEEEECCCC---CCHHHHHHHHHHHCCCCEEEE
T ss_conf 989998089865-0999999999999868-98799977986---337999999999869976976
No 193
>PRK13530 arsenate reductase; Provisional
Probab=27.57 E-value=49 Score=14.63 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=43.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 26999720276889999998089888609989999170047886789999999983799899934265302
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDK 72 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~ 72 (274)
+|||+ =+|.++|.-+.+.|- ++...-.|-+.-+--. ..++.|...+-|.+.|+|. -+|....
T Consensus 5 ~VLFv--Ct~Ns~RSqmAEal~--~~~~~~~~~v~SAG~~--~~~v~p~ai~vm~e~Gidi---s~~~~k~ 66 (133)
T PRK13530 5 TIYFL--CTGNSCRSQMAEGWG--KQYLGDEWNVYSAGIE--AHGVNPNAIKAMKEVGIDI---SNQTSDL 66 (133)
T ss_pred EEEEE--ECCCCHHHHHHHHHH--HHHCCCCEEEEECCCC--CCCCCHHHHHHHHHCCCCC---CCCCCCC
T ss_conf 79999--599627889999999--9865896699806778--7786989999999869165---5578775
No 194
>KOG2738 consensus
Probab=27.28 E-value=49 Score=14.64 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=21.0
Q ss_pred CCCEEEEEEE-EECCCCCCCCCCCCC
Q ss_conf 9867467899-876831657875349
Q gi|254780659|r 250 TGLAEKIAPI-RIGPRLSETRPDFWT 274 (274)
Q Consensus 250 tG~a~~I~ri-~igg~L~e~~p~~~~ 274 (274)
-|.+..||++ .+|+.-..+|||=||
T Consensus 306 ~G~tFTIEPmit~G~~~d~tWPD~WT 331 (369)
T KOG2738 306 PGQTFTIEPMITIGTWEDITWPDDWT 331 (369)
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCE
T ss_conf 68558863024036655554899863
No 195
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=27.24 E-value=49 Score=14.59 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=55.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCC-CCCCCHH-HHHHHHHCCCCEEEECHHHHCCCCHHHH
Q ss_conf 9269997202768899999980898886099899991700478-8678999-9999983799899934265302220475
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAG-GFGITEK-IFCEMMETGIDVITTGNHVWDKREALVF 78 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~-G~Git~~-~~~~l~~~GvDviT~GNH~wd~kei~~~ 78 (274)
|||+|+|- ..-+...++..+ ...|++-.||..-+..+| |.-+.+. +.+.-.+.|+.+++--+ +...|..+.
T Consensus 1 mkI~f~Gt--~~fs~~~L~~L~---~~~~~i~~Vvt~pdk~~gR~~k~~~~~v~~~a~~~~i~~~~p~~--~~~~~~~~~ 73 (309)
T PRK00005 1 MRIVFMGT--PEFAVPSLKALL---ESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPES--LRDPEFLAE 73 (309)
T ss_pred CEEEEECC--CHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCC--CCCHHHHHH
T ss_conf 98999889--889999999999---78994799992999866899979899899999986993883577--999999999
Q ss_pred HHH-CCCEEEECCCCCCCC
Q ss_conf 421-893897500798887
Q gi|254780659|r 79 SQR-HCKFLRPANYPPNTP 96 (274)
Q Consensus 79 i~~-~~~ilRP~N~p~~~P 96 (274)
+.+ .+.++--+.|..-.|
T Consensus 74 l~~~~~Dl~vv~~~g~iip 92 (309)
T PRK00005 74 LAALNADVIVVVAYGQILP 92 (309)
T ss_pred HHHCCCCEEEEEEHHHHCC
T ss_conf 9841999999975234334
No 196
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=27.22 E-value=49 Score=14.59 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=20.5
Q ss_pred HHHCCCCEEEECCEECC-CC------CCC--------CHHHHHHHHHCCCCEEEECHH
Q ss_conf 88609989999170047-88------678--------999999998379989993426
Q gi|254780659|r 26 IRDFQLDFVIANGENSA-GG------FGI--------TEKIFCEMMETGIDVITTGNH 68 (274)
Q Consensus 26 ~~~~~~DfvIaNgENaa-~G------~Gi--------t~~~~~~l~~~GvDviT~GNH 68 (274)
|.+...-+||.-+-..+ .| .|| -+++++.+.+.|.-++--=+|
T Consensus 42 rA~gG~GlIite~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avh~~G~~i~~QL~H 99 (336)
T cd02932 42 RALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH 99 (336)
T ss_pred HHCCCCCEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9759973899745586612056998656567999999999999998669879986224
No 197
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=26.82 E-value=50 Score=14.54 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=10.6
Q ss_pred EEEEEECCCH---HHHHHHHHHHHHHHHHC
Q ss_conf 6999720276---88999999808988860
Q gi|254780659|r 3 LLFLGDIVGK---TGRSIVYEMLPRLIRDF 29 (274)
Q Consensus 3 iLfiGDIvG~---~Gr~~v~~~Lp~l~~~~ 29 (274)
|.|+=|--+. .--+.+++.+..+.+++
T Consensus 5 lvFllD~S~Sv~~~~F~~~k~Fv~~lv~~f 34 (186)
T cd01480 5 ITFVLDSSESVGLQNFDITKNFVKRVAERF 34 (186)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999996889878789999999999999998
No 198
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=26.66 E-value=37 Score=15.42 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=20.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 4788678999999998379989993
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITT 65 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~ 65 (274)
+++++||...++++|-+.|.+|+-.
T Consensus 15 aag~~GiG~aia~~la~~GA~V~i~ 39 (259)
T PRK07370 15 IANNRSIAWGIAQQLHAAGAELGIT 39 (259)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 8998579999999999869999999
No 199
>PRK00103 SPOUT methyltransferase superfamily protein; Provisional
Probab=26.59 E-value=51 Score=14.52 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=49.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHH---HHHHC---CCCEEEE---CHHHHC
Q ss_conf 92699972027688999999808988860998999917004788678999999---99837---9989993---426530
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFC---EMMET---GIDVITT---GNHVWD 71 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~---~l~~~---GvDviT~---GNH~wd 71 (274)
++|+.+|..--.+=++++.+++.+|.+-.+++++-...++.+....+.....+ .+++. +--+|-+ |- .++
T Consensus 3 i~ii~iGK~~~~~~~~~i~~Y~kRl~~~~~i~~~el~~~~~~~~~~~~~~~~~E~~~il~~~~~~~~~I~LDe~Gk-~~s 81 (156)
T PRK00103 3 IQLIAVGKLMPKWVKEGFAEYAKRLPRDCKLELIEIPDEKRGKNADIERIKAKEGERILAAIPKGARVVALDIRGK-PWT 81 (156)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CCC
T ss_conf 9999970769679999999999971742588558947877767589999999999999984799998999917998-057
Q ss_pred CCCHHHHHHH
Q ss_conf 2220475421
Q gi|254780659|r 72 KREALVFSQR 81 (274)
Q Consensus 72 ~kei~~~i~~ 81 (274)
-.+...+|++
T Consensus 82 S~~fa~~l~~ 91 (156)
T PRK00103 82 SEQFAKELER 91 (156)
T ss_pred HHHHHHHHHH
T ss_conf 6999999999
No 200
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=26.42 E-value=32 Score=15.80 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 88678999999998379989993426530
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGNHVWD 71 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd 71 (274)
-..-.+.++.+.-.++|+|+||-|.-.||
T Consensus 37 ~~~~~~~~~~~~Q~~aGidiitdGe~~~~ 65 (320)
T PRK08575 37 AIREYTRRAFELLKDAGIKYTTDGLYRWD 65 (320)
T ss_pred HHHHHHHHHHHHHHHCCCCEECCCCCHHH
T ss_conf 99999999999999749945256851088
No 201
>PRK06523 short chain dehydrogenase; Provisional
Probab=25.93 E-value=39 Score=15.24 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 88678999999998379989993426
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGNH 68 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GNH 68 (274)
++.||.+.++++|.+.|++|+..+..
T Consensus 17 ~s~GIG~aia~~la~~Ga~V~~~~r~ 42 (260)
T PRK06523 17 GTKGIGAATVARFREAGARVVTTARS 42 (260)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 57699999999999879999999488
No 202
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=25.87 E-value=36 Score=15.48 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=32.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEEEC
Q ss_conf 4678988851688654111578719999999984--799867467899876
Q gi|254780659|r 214 KEEPINRFITQIPRNRFVIANGPATLCGICAEIS--DVTGLAEKIAPIRIG 262 (274)
Q Consensus 214 ~~~~i~rf~t~~p~~r~~~a~g~~~l~gv~ieid--~~tG~a~~I~ri~ig 262 (274)
.+..++.-+...- ..|+...|++.|-|--|++. +.-||.-....||+.
T Consensus 379 Ae~~L~~al~~~g-~~y~~~~GegAFYGPKID~~v~DalgR~wq~~TIQlD 428 (576)
T PRK12305 379 AEADLKKMLKDNK-INYKEMIGEAAFYGPKIDFQVKTVLNKEITVSTIQLD 428 (576)
T ss_pred HHHHHHHHHHHCC-CCCEECCCCCCEECCCCCEEEECCCCCEEEEEEEEEE
T ss_conf 9999999999749-9714230650105676346985067867874245666
No 203
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=25.80 E-value=43 Score=14.99 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=8.7
Q ss_pred CEEEECHHHHCCCCHHHHH
Q ss_conf 8999342653022204754
Q gi|254780659|r 61 DVITTGNHVWDKREALVFS 79 (274)
Q Consensus 61 DviT~GNH~wd~kei~~~i 79 (274)
++++.|-|..=++.+...+
T Consensus 25 ~~~S~G~~~~WR~~~v~~~ 43 (233)
T pfam01209 25 DVISFGIHRLWKDFTMKCM 43 (233)
T ss_pred HHHCCCHHHHHHHHHHHHC
T ss_conf 7860734999999999861
No 204
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=25.60 E-value=53 Score=14.40 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999808988860998999917004788678999999998379989993
Q gi|254780659|r 18 VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT 65 (274)
Q Consensus 18 v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~ 65 (274)
+.+.+.+--++++.+++|.|.++.. ---.+..++|.+.++|.|-.
T Consensus 17 ~~~gi~~~a~~~Gy~~~i~~s~~~~---~~e~~~i~~l~~~~vdgiI~ 61 (268)
T cd06323 17 LKDGAQKEAKELGYELTVLDAQNDA---AKQLNDIEDLITRGVDAIII 61 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999759989998199999---99999999999649998997
No 205
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=25.59 E-value=47 Score=14.71 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=41.7
Q ss_pred CCCCCCCEEEEEC-------CCCCEEEEEEEEHHHCCCCC---CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 8887540799984-------89928999996000058833---2598999999986341368998899962576228999
Q gi|254780659|r 93 PNTPGNGSGLYCA-------KNGSNVLVANIMGRVFMNPL---LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQ 162 (274)
Q Consensus 93 ~~~PG~G~~i~~~-------~~g~ki~Vinl~Gr~fM~~~---~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~ 162 (274)
.|-=|.|-+++-. .+|.++| +|-|. ..==+..+-++|+.+ ....-+.==---+-.-|.
T Consensus 334 QGDVGSGKT~VA~la~l~~i~~GYQ~A--------LMAPTEiLA~QHy~~~~~~l~p~----~~~vaLLTGs~k~~~r~~ 401 (721)
T TIGR00643 334 QGDVGSGKTLVAALAMLAAIESGYQVA--------LMAPTEILAEQHYDSLRNLLAPL----GIEVALLTGSLKGKQRKE 401 (721)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEE--------EECCHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCHHHHHH
T ss_conf 101066389999999999984698099--------91776899999999999962354----857888615667878999
Q ss_pred HHHHHHCCCEEEEEECCCCCC
Q ss_conf 999760895779980697624
Q gi|254780659|r 163 CFAHFVDSRASLVVGTHTHIP 183 (274)
Q Consensus 163 A~g~~lDGrVsaVvGTHTHV~ 183 (274)
.+..--.|.+..|||||-=+|
T Consensus 402 ~~e~i~~G~~~~~vGTHALiq 422 (721)
T TIGR00643 402 LLETIASGEIHLVVGTHALIQ 422 (721)
T ss_pred HHHHHHCCCCEEEEHHHHHHH
T ss_conf 999986395205733135545
No 206
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=25.52 E-value=53 Score=14.39 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHCCCEEEECC
Q ss_conf 02220475421893897500
Q gi|254780659|r 71 DKREALVFSQRHCKFLRPAN 90 (274)
Q Consensus 71 d~kei~~~i~~~~~ilRP~N 90 (274)
++.+.++-+.=.||+||...
T Consensus 31 ~N~~af~~~~l~PRvL~dv~ 50 (299)
T cd02809 31 RNRAAFDRIRLRPRVLRDVS 50 (299)
T ss_pred HHHHHHHHCCEECCCCCCCC
T ss_conf 99999983647740134887
No 207
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=25.43 E-value=53 Score=14.38 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH-HH
Q ss_conf 99999998634136899889996257622899999976089577998069762465456403672898405601371-21
Q gi|254780659|r 130 FRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY-NS 208 (274)
Q Consensus 130 F~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~-~S 208 (274)
+....+.+++..+. .......++..|. +.+.+.-+.-..+.+|++-+. |.--+ +--.+..+.|..=|- =|
T Consensus 134 ~~G~~~al~~~g~~-~~~~~~~~~~~~~-~~~~~~~ll~~~~~~Ai~~~n------D~~A~-g~~~~l~~~g~~vP~Dis 204 (259)
T cd01542 134 KQGYLDALKEHGIC-PPNIVETDFSYES-AYEAAQELLEPQPPDAIVCAT------DTIAL-GAMKYLQELGRRIPEDIS 204 (259)
T ss_pred HHHHHHHHHHCCCC-CCEEEECCCCHHH-HHHHHHHHHHCCCCCCEEECC------HHHHH-HHHHHHHHCCCCCCCCEE
T ss_conf 99999999976999-6359965787778-999999997457998324345------89999-999999981999999869
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 03547467898885
Q gi|254780659|r 209 SIGLDKEEPINRFI 222 (274)
Q Consensus 209 VIG~~~~~~i~rf~ 222 (274)
|+|.|-.. +.+++
T Consensus 205 vigfdd~~-~~~~~ 217 (259)
T cd01542 205 VAGFGGYE-LSSVV 217 (259)
T ss_pred EEEECCHH-HHHHC
T ss_conf 99989829-99826
No 208
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=25.20 E-value=54 Score=14.35 Aligned_cols=139 Identities=18% Similarity=0.253 Sum_probs=75.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHC-CCCE-EEECHHHHCCCCHHHH
Q ss_conf 9269997202768899999980898886099899991700478867899999999837-9989-9934265302220475
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMET-GIDV-ITTGNHVWDKREALVF 78 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~-GvDv-iT~GNH~wd~kei~~~ 78 (274)
|+||++.|.-+..- + ....-++....++|+||-.|.- +++..+.+|-.. ...+ .--||.=.+...
T Consensus 2 m~ilviSDtH~~~~--~-~~~~~~~~~~~~~d~vih~GD~------~~~~~~~~l~~~~~~~i~~V~GN~D~~~~~---- 68 (172)
T COG0622 2 MKILVISDTHGPLR--A-IEKALKIFNLEKVDAVIHAGDS------TSPFTLDALEGGLAAKLIAVRGNCDGEVDQ---- 68 (172)
T ss_pred CEEEEEECCCCCHH--H-HHHHHHHHHHCCCCEEEECCCC------CCCCCHHHHHHCCCCCEEEEECCCCCCCCC----
T ss_conf 48999954678724--6-6699998510599999989975------772337877411366369997778875101----
Q ss_pred HHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHH-HCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 42189389750079888754079998489928999996000-05883325989999999863413689988999625762
Q gi|254780659|r 79 SQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGR-VFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAET 157 (274)
Q Consensus 79 i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr-~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa 157 (274)
...|=.. +++. +|.|+.++. |- ++ + -.++ ...+.+-++ ..
T Consensus 69 --------------~~~p~~~--~~~~-~g~ki~l~H--Gh~~~--~-~~~~-~~l~~la~~----~~------------ 109 (172)
T COG0622 69 --------------EELPEEL--VLEV-GGVKIFLTH--GHLYF--V-KTDL-SLLEYLAKE----LG------------ 109 (172)
T ss_pred --------------CCCCHHH--EEEE-CCEEEEEEC--CCCCC--C-CCCH-HHHHHHHHH----CC------------
T ss_conf --------------3599658--6898-889999988--98346--6-7688-899999974----69------------
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 289999997608957799806976246545640367289840560137121
Q gi|254780659|r 158 TSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNS 208 (274)
Q Consensus 158 TSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~S 208 (274)
++.++==|||+|.+... +|+-++-==-+|+|..|
T Consensus 110 --------------~Dvli~GHTH~p~~~~~---~~i~~vNPGS~s~pr~~ 143 (172)
T COG0622 110 --------------ADVLIFGHTHKPVAEKV---GGILLVNPGSVSGPRGG 143 (172)
T ss_pred --------------CCEEEECCCCCCEEEEE---CCEEEECCCCCCCCCCC
T ss_conf --------------98999798675408998---99999849986777889
No 209
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=25.17 E-value=54 Score=14.35 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=47.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC-HHHHHHH-HHCCCCEEEECH
Q ss_conf 999720276889999998089888609989999170047886789-9999999-837998999342
Q gi|254780659|r 4 LFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT-EKIFCEM-METGIDVITTGN 67 (274)
Q Consensus 4 LfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git-~~~~~~l-~~~GvDviT~GN 67 (274)
.+.||=+=..-.+...+.+-.+.+++++|++||-----||-+|+. ..+|+.. -++||-++|+=+
T Consensus 54 iICGDnYf~en~dea~~~il~mv~~~~pDlfiAGPAFnAGRYGvACG~i~kaV~e~l~IP~vTgMy 119 (349)
T pfam07355 54 VICGDSYFNENIEEAVAEILEMLKEEKPDLFIAGPAFNAGRYGVACGTIAKAVKEELGIPAVTGMY 119 (349)
T ss_pred EEECCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 996862444099999999999998429998987663256425888999999999986996386415
No 210
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=24.90 E-value=54 Score=14.32 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECC-----------CC-CHHHHHHHHH-HHCCCEEEEE
Q ss_conf 25989999999863413689988999625-----------76-2289999997-6089577998
Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFH-----------AE-TTSEKQCFAH-FVDSRASLVV 176 (274)
Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfH-----------aE-aTSEK~A~g~-~lDGrVsaVv 176 (274)
+-.||..++++++.++ ..-.+|++|.. || +|.|+++|-. |-.|-+-..+
T Consensus 10 ~~~~~s~Ie~Ai~al~--~Gk~Viv~DdedREnEgDlv~aAe~~t~e~i~fm~~~~~GliC~~~ 71 (218)
T PRK00910 10 FGDPITRVENALQALR--EGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCL 71 (218)
T ss_pred HCCCCCHHHHHHHHHH--CCCEEEEEECCCCCCHHCEEEEHHHCCHHHHHHHHHHCCCCEEEEC
T ss_conf 5798452999999998--8995999978998761416867664999999999995997199647
No 211
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=24.82 E-value=55 Score=14.31 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCC---EEEECHH------------HHCC
Q ss_conf 0276889999998089888609989999170047886789999999983-7998---9993426------------5302
Q gi|254780659|r 9 IVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGID---VITTGNH------------VWDK 72 (274)
Q Consensus 9 IvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvD---viT~GNH------------~wd~ 72 (274)
|+|.|.+...++.+.-|.+ ++++|.+.|-- =.++|++..+++++ .|.+ .|-.--- .+..
T Consensus 3 iY~~~~C~t~rka~~~L~~-~~i~~~~id~~----k~plt~~eL~~~l~~~g~~~~~lin~r~~~~k~l~l~~~~~~ls~ 77 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-HGVDYTAIDIV----EEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLSE 77 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-CCCCEEEEECC----CCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHCCCCCCCCCCCH
T ss_conf 9837998889999999998-59983999614----779599999999999498999986057615455593001313899
Q ss_pred CCHHHHHHHCCCEE-EECC
Q ss_conf 22047542189389-7500
Q gi|254780659|r 73 REALVFSQRHCKFL-RPAN 90 (274)
Q Consensus 73 kei~~~i~~~~~il-RP~N 90 (274)
.|++++|-++|.|| ||.=
T Consensus 78 ~e~~~ll~~~P~LikRPIi 96 (111)
T cd03036 78 EEALELLSSDGMLIKRPFV 96 (111)
T ss_pred HHHHHHHHHCCCEEECCEE
T ss_conf 9999999859444755789
No 212
>PRK12928 lipoyl synthase; Provisional
Probab=24.68 E-value=55 Score=14.29 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=16.5
Q ss_pred HHHHHHHHCCCCEEEECCEE----CCCCCCCCHHHHHHHHH
Q ss_conf 80898886099899991700----47886789999999983
Q gi|254780659|r 21 MLPRLIRDFQLDFVIANGEN----SAGGFGITEKIFCEMME 57 (274)
Q Consensus 21 ~Lp~l~~~~~~DfvIaNgEN----aa~G~Git~~~~~~l~~ 57 (274)
++.+-.++.+++.|+.-.=| ..+|.+.=.+..+++.+
T Consensus 94 rvA~av~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~ 134 (290)
T PRK12928 94 RVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRA 134 (290)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999998389768984123678866452999999999984
No 213
>PRK07534 methionine synthase I; Validated
Probab=24.63 E-value=34 Score=15.64 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHCCCCEEEECHH
Q ss_conf 8999999998379989993426
Q gi|254780659|r 47 ITEKIFCEMMETGIDVITTGNH 68 (274)
Q Consensus 47 it~~~~~~l~~~GvDviT~GNH 68 (274)
+-.++-++.+++|+||||+-+-
T Consensus 46 ~V~~iH~dyi~AGAdVI~TNTy 67 (335)
T PRK07534 46 KIRALYQGAVDAGSDIFLTNSF 67 (335)
T ss_pred HHHHHHHHHHHHCCCEEEECCC
T ss_conf 9999999999965999980776
No 214
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.32 E-value=56 Score=14.25 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=5.3
Q ss_pred HHHHHCCCCEEE
Q ss_conf 999837998999
Q gi|254780659|r 53 CEMMETGIDVIT 64 (274)
Q Consensus 53 ~~l~~~GvDviT 64 (274)
+.|-++|+|.|-
T Consensus 242 ~~l~~~gvD~l~ 253 (353)
T cd04735 242 DKLADKGLDYLH 253 (353)
T ss_pred HHHHHCCCCEEE
T ss_conf 999847998899
No 215
>PRK13114 consensus
Probab=24.22 E-value=56 Score=14.23 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHCCCCEEEECH
Q ss_conf 7899999999837998999342
Q gi|254780659|r 46 GITEKIFCEMMETGIDVITTGN 67 (274)
Q Consensus 46 Git~~~~~~l~~~GvDviT~GN 67 (274)
-.|.++.+.|-+.|+|+|-.|=
T Consensus 27 ~~t~~~i~~l~~~GaDiiEiGi 48 (266)
T PRK13114 27 GDTAANLDALVAGGADVIELGM 48 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999976999999799
No 216
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=24.10 E-value=56 Score=14.22 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=36.6
Q ss_pred CCCHHH------HHHHHHHHHHHHHHCCCC-EE--EECCEECCCCCCCCHHHHHHH--HHCCCCEEEEC
Q ss_conf 027688------999999808988860998-99--991700478867899999999--83799899934
Q gi|254780659|r 9 IVGKTG------RSIVYEMLPRLIRDFQLD-FV--IANGENSAGGFGITEKIFCEM--METGIDVITTG 66 (274)
Q Consensus 9 IvG~~G------r~~v~~~Lp~l~~~~~~D-fv--IaNgENaa~G~Git~~~~~~l--~~~GvDviT~G 66 (274)
|+|++| -++|.+.|...-+....+ +. =+|++....-+=+=.+++++| -..|.+|=++|
T Consensus 48 iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~ln~~~~~~~vP~tG 116 (383)
T TIGR02928 48 IYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQLNRRGSGEEVPTTG 116 (383)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 878889878899999999999986226997158999778546846999999999851577888898877
No 217
>pfam02635 DrsE DsrE/DsrF-like family. DsrE is a small soluble protein involved in intracellular sulfur reduction. This family also includes DsrF.
Probab=24.04 E-value=56 Score=14.21 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=47.6
Q ss_pred EEEEEEECCCH--------HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 26999720276--------8899999980898886099899991700478867899999999837998999342653022
Q gi|254780659|r 2 RLLFLGDIVGK--------TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKR 73 (274)
Q Consensus 2 kiLfiGDIvG~--------~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~k 73 (274)
.++|.||=|-- .+..-+.+.+..|.+ ++ .-+.-++|++..+|++++ +| --|+++..+|.-
T Consensus 37 ~vv~~g~gV~~~~~~~~~~~~~~~~~~~l~~l~~-~g--v~~~vC~~s~~~~gi~~~---~l-~~~~~~~~~g~~----- 104 (119)
T pfam02635 37 EVFFYGDGVLLLLKDQAPAIDEKPLQELLKALAE-YG--VKLYVCGNSLKARGITED---DL-LPGVDVVPSGLG----- 104 (119)
T ss_pred EEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHH-CC--CEEEEEHHHHHHCCCCHH---HC-CCCCCEEECCHH-----
T ss_conf 9999753888875479997532109999999996-79--969986899988599967---87-844464785899-----
Q ss_pred CHHHHHHHCCCEEEE
Q ss_conf 204754218938975
Q gi|254780659|r 74 EALVFSQRHCKFLRP 88 (274)
Q Consensus 74 ei~~~i~~~~~ilRP 88 (274)
|+.+++.+..++|+|
T Consensus 105 el~~l~~~g~~~i~f 119 (119)
T pfam02635 105 ELAELQAEGDRVITF 119 (119)
T ss_pred HHHHHHHHCCEEEEC
T ss_conf 999999835927739
No 218
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.92 E-value=57 Score=14.20 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99808988860998999917004788678999999998379989993
Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT 65 (274)
Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~ 65 (274)
...+.++.+++++|.|.++.... .|+. ........|+.++.+
T Consensus 72 ~~~~~~~~~~~~pDiIh~~~~~~---~~~~--a~~~~~~~~ip~i~~ 113 (364)
T cd03814 72 RRRVRRLLDAFAPDVVHIATPGP---LGLA--ALRAARRLGIPVVTS 113 (364)
T ss_pred HHHHHHHHHHCCCCEEEECCCCH---HHHH--HHHHHHHCCCCEEEE
T ss_conf 99999999865999999878416---7899--999999759978999
No 219
>pfam00737 PsbH Photosystem II 10 kDa phosphoprotein. This protein is phosphorylated in a light dependent reaction.
Probab=23.91 E-value=26 Score=16.38 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=12.1
Q ss_pred CEEEECCCC--CCCCCCCE
Q ss_conf 389750079--88875407
Q gi|254780659|r 84 KFLRPANYP--PNTPGNGS 100 (274)
Q Consensus 84 ~ilRP~N~p--~~~PG~G~ 100 (274)
.+|||+|.. +-+||.|.
T Consensus 6 ~lLkpLNseyGKvapGWGT 24 (52)
T pfam00737 6 DLLKPLNSEYGKVAPGWGT 24 (52)
T ss_pred HHCCCCCCCCCCCCCCCCC
T ss_conf 2024554434742688667
No 220
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=23.88 E-value=54 Score=14.35 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=7.7
Q ss_pred HHHHHCCCCEEEECH
Q ss_conf 999837998999342
Q gi|254780659|r 53 CEMMETGIDVITTGN 67 (274)
Q Consensus 53 ~~l~~~GvDviT~GN 67 (274)
+.|.+..+|+|-.|=
T Consensus 64 ~~l~d~~i~aiKiGm 78 (253)
T PRK12413 64 NSLKDVPFSAIKIGL 78 (253)
T ss_pred HHHHCCCCCEEEEEC
T ss_conf 996589989899916
No 221
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=23.63 E-value=57 Score=14.16 Aligned_cols=50 Identities=16% Similarity=0.358 Sum_probs=27.9
Q ss_pred EEEEH----HHCCCCCC--CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 99600----00588332--59899999998634136899889996257622899999
Q gi|254780659|r 114 ANIMG----RVFMNPLL--DDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCF 164 (274)
Q Consensus 114 inl~G----r~fM~~~~--d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~ 164 (274)
.|++| |.+.+|.. ----.++..++......+...++++||||-+. -|.+|
T Consensus 113 ~~l~G~dLNR~w~~p~~~~hP~i~~~K~li~~~~~~~~~~~~y~DlHgHS~-k~n~F 168 (278)
T cd06906 113 CSLSGEDLNRQWQSPNPELHPTIYHTKGLLQYLAAIKRSPLVYCDYHGHSR-KKNVF 168 (278)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCEE
T ss_conf 577788567454788835395999999999999744774079994144445-46746
No 222
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=23.51 E-value=58 Score=14.15 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 9980898886099899991700478867899999999837998999
Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVIT 64 (274)
Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT 64 (274)
.+.||++.+++.++-|+.|-+-.....=.-..+...|.+.|+.+.+
T Consensus 79 ~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~ 124 (461)
T COG0415 79 EQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHS 124 (461)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999998185068850010563888999999888763954788
No 223
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=23.49 E-value=58 Score=14.14 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=33.2
Q ss_pred CCCCEEEECHHHHCCCCHHH-HHHHCCCEEEECCCCCCCCC------CCEEEEECCCCCEEEEEEEEH--------HHCC
Q ss_conf 79989993426530222047-54218938975007988875------407999848992899999600--------0058
Q gi|254780659|r 58 TGIDVITTGNHVWDKREALV-FSQRHCKFLRPANYPPNTPG------NGSGLYCAKNGSNVLVANIMG--------RVFM 122 (274)
Q Consensus 58 ~GvDviT~GNH~wd~kei~~-~i~~~~~ilRP~N~p~~~PG------~G~~i~~~~~g~ki~Vinl~G--------r~fM 122 (274)
+||++|-+=.|.=--+.+++ ||...=++|=-.=|=.-||= +|... . .+|.=...--|+. +.||
T Consensus 75 YgvNL~hs~~~p~~E~~~vdL~Lr~gV~~vEAsAFm~lTPalV~YRa~Gl~R-~-~~G~v~~~~R~~AKVSRpEVA~~Fm 152 (449)
T TIGR02814 75 YGVNLIHSPSDPELENGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHR-D-ADGRVVIRNRLIAKVSRPEVAEAFM 152 (449)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCC-C-CCCCEEECCEEEEEECCHHHHHHHC
T ss_conf 0677864777835689999999736996799872020368888885615721-6-8984777455678516679998621
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 83325989999999863
Q gi|254780659|r 123 NPLLDDPFRTADKILAT 139 (274)
Q Consensus 123 ~~~~d~PF~~~d~~l~~ 139 (274)
.|. |=..+++++.+
T Consensus 153 ~PA---P~~~L~~L~a~ 166 (449)
T TIGR02814 153 SPA---PAAILQKLLAE 166 (449)
T ss_pred CCC---HHHHHHHHHHC
T ss_conf 523---48999998533
No 224
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=23.48 E-value=58 Score=14.14 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=6.2
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 999999837998999
Q gi|254780659|r 50 KIFCEMMETGIDVIT 64 (274)
Q Consensus 50 ~~~~~l~~~GvDviT 64 (274)
+.++.|.++|+|+|+
T Consensus 97 ~r~~~l~~ag~d~i~ 111 (325)
T cd00381 97 ERAEALVEAGVDVIV 111 (325)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999976998999
No 225
>pfam02590 SPOUT_MTase Predicted SPOUT methyltransferase. This family of proteins are predicted to be SPOUT methyltransferases.
Probab=23.33 E-value=58 Score=14.13 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=36.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC
Q ss_conf 26999720276889999998089888609989999170047886789
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT 48 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git 48 (274)
+|+.+|-.--++-+.++..++.+|.+-.+++++-..-++.++.....
T Consensus 4 ~ii~iGk~~~~~~~~~~~~Y~kRl~~~~~i~~iel~~~~~~~~~~~~ 50 (155)
T pfam02590 4 RIIAVGKLKEKYVKDGIAEYLKRLSRYCKLELIELPDEKRPSAADIE 50 (155)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHH
T ss_conf 99997275977999999999998174478857993787787755899
No 226
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235 Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=23.32 E-value=19 Score=17.27 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=41.1
Q ss_pred ECHHHHCCCCHHHHHHH---------------------CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEH--HHC
Q ss_conf 34265302220475421---------------------8938975007988875407999848992899999600--005
Q gi|254780659|r 65 TGNHVWDKREALVFSQR---------------------HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMG--RVF 121 (274)
Q Consensus 65 ~GNH~wd~kei~~~i~~---------------------~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~G--r~f 121 (274)
-|||+|..+++-..+++ +++-+|| |.| +|.. ..+...+=|| .||
T Consensus 92 vGNHS~hHPsl~~~~~~ek~~~El~~V~e~~~~vTG~~~~~YlRP---PrG-------~fSE---~tL~~t~~LGY~~vF 158 (225)
T TIGR02884 92 VGNHSVHHPSLTTVLDDEKFKEELDGVEEEFKEVTGKKEMKYLRP---PRG-------KFSE---RTLAYTKELGYKTVF 158 (225)
T ss_pred ECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEECC---CCC-------CCHH---HHHHHHHHCCCCEEE
T ss_conf 325655775555513488999998889988764057627700078---787-------5405---789999974882110
Q ss_pred -----CCC---CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf -----883---3259899999998634136899889996257622
Q gi|254780659|r 122 -----MNP---LLDDPFRTADKILATCPLKEQADVIVFDFHAETT 158 (274)
Q Consensus 122 -----M~~---~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT 158 (274)
++= ..-.|=.+=+++++++. +--|+=+||=+-
T Consensus 159 WSlAy~DW~~D~Q~G~~~A~~~im~~~H-----pGai~LLHAVS~ 198 (225)
T TIGR02884 159 WSLAYKDWEVDKQKGKEYAYKQIMKKIH-----PGAILLLHAVSK 198 (225)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCC-----CHHHHHHHCCCH
T ss_conf 0122026776987787778877754157-----024133231474
No 227
>KOG1207 consensus
Probab=23.13 E-value=59 Score=14.10 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=96.9
Q ss_pred CEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEE-------
Q ss_conf 8999917004788678999999998379989993426530222047542189389750079888754079998-------
Q gi|254780659|r 32 DFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYC------- 104 (274)
Q Consensus 32 DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~------- 104 (274)
+-+|++--- .|.||.+.++..|-++|+-||.-- -.+.++.++..+.|-+|-|.-..-+ +|....
T Consensus 6 aG~~vlvTg--agaGIG~~~v~~La~aGA~ViAva---R~~a~L~sLV~e~p~~I~Pi~~Dls----~wea~~~~l~~v~ 76 (245)
T KOG1207 6 AGVIVLVTG--AGAGIGKEIVLSLAKAGAQVIAVA---RNEANLLSLVKETPSLIIPIVGDLS----AWEALFKLLVPVF 76 (245)
T ss_pred CCEEEEEEC--CCCCCCHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHCCCC
T ss_conf 661999605--666414999999986688799995---6988999998529764245575133----8999997614657
Q ss_pred ----CCCCCEEEEEEEEH--------HHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-----------CCCCHHHH
Q ss_conf ----48992899999600--------00588332598999999986341368998899962-----------57622899
Q gi|254780659|r 105 ----AKNGSNVLVANIMG--------RVFMNPLLDDPFRTADKILATCPLKEQADVIVFDF-----------HAETTSEK 161 (274)
Q Consensus 105 ----~~~g~ki~Vinl~G--------r~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDf-----------HaEaTSEK 161 (274)
..|..-++.+.-.| |.|-- .+.-||..++-+-... +.+..+-.+|.. |.--.|-|
T Consensus 77 pidgLVNNAgvA~~~pf~eiT~q~fDr~F~V-Nvravi~v~Q~var~l-v~R~~~GaIVNvSSqas~R~~~nHtvYcatK 154 (245)
T KOG1207 77 PIDGLVNNAGVATNHPFGEITQQSFDRTFAV-NVRAVILVAQLVARNL-VDRQIKGAIVNVSSQASIRPLDNHTVYCATK 154 (245)
T ss_pred CHHHHHCCCHHHHCCHHHHHHHHHHCCEEEE-EEEEEEEHHHHHHHHH-HHCCCCCEEEEECCHHCCCCCCCCEEEEECH
T ss_conf 5134303501443163788868763000454-2122210899988766-6405886089740211036668834775138
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 99997608957799806976246545640367289840560137121035474678988851688654111578719999
Q gi|254780659|r 162 QCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCG 241 (274)
Q Consensus 162 ~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~g 241 (274)
.|+-..-. -...-+|.|.----+ -+-|-.+||.|.-- +| ||+ --++++..+|-.||.+ -+-..++
T Consensus 155 aALDmlTk-~lAlELGp~kIRVNs-----VNPTVVmT~MG~dn--WS----DP~-K~k~mL~riPl~rFaE--V~eVVnA 219 (245)
T KOG1207 155 AALDMLTK-CLALELGPQKIRVNS-----VNPTVVMTDMGRDN--WS----DPD-KKKKMLDRIPLKRFAE--VDEVVNA 219 (245)
T ss_pred HHHHHHHH-HHHHHHCCCEEEEEC-----CCCEEEEECCCCCC--CC----CCH-HCCCHHHHCCHHHHHH--HHHHHHH
T ss_conf 78999999-988751864157405-----58718881146444--68----910-1053554376555557--9999756
Q ss_pred EEEEEECCCCCE
Q ss_conf 999984799867
Q gi|254780659|r 242 ICAEISDVTGLA 253 (274)
Q Consensus 242 v~ieid~~tG~a 253 (274)
++.-+.++++-.
T Consensus 220 ~lfLLSd~ssmt 231 (245)
T KOG1207 220 VLFLLSDNSSMT 231 (245)
T ss_pred HEEEEECCCCCC
T ss_conf 325652576763
No 228
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=23.10 E-value=46 Score=14.77 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEE--------------CH-HHHCCC-CHHHHHHHCC------CEEEECCCCCCCCCC
Q ss_conf 4788678999999998379989993--------------42-653022-2047542189------389750079888754
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITT--------------GN-HVWDKR-EALVFSQRHC------KFLRPANYPPNTPGN 98 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~--------------GN-H~wd~k-ei~~~i~~~~------~ilRP~N~p~~~PG~ 98 (274)
.++|.|||..-.++|.++|+|=|=. |. ++|.|| ++-..+.+.. .++-=-|.. ..|.-
T Consensus 87 ITSGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~V~HR~Ni~-~i~~~ 165 (363)
T TIGR02109 87 ITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTLNFVLHRHNID-QIPEI 165 (363)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHCCCCCHHH-HHHHH
T ss_conf 77634567999999975798578876414787888641250258999999999999618981760200242021-36789
Q ss_pred -CEE-EEECCCCCEEEEEEEEH-----HHC-CCCCCCCHHHHHHHHHHH--CCCCCC---CCEEEE--ECCCC
Q ss_conf -079-99848992899999600-----005-883325989999999863--413689---988999--62576
Q gi|254780659|r 99 -GSG-LYCAKNGSNVLVANIMG-----RVF-MNPLLDDPFRTADKILAT--CPLKEQ---ADVIVF--DFHAE 156 (274)
Q Consensus 99 -G~~-i~~~~~g~ki~Vinl~G-----r~f-M~~~~d~PF~~~d~~l~~--~~~~~~---~~~i~V--DfHaE 156 (274)
-.. -... +-..||-+|--| |-. | |. ..=-..+.++.++ -+++.. ..+++| |+|+|
T Consensus 166 i~La~~L~A-drvE~A~~QyYGWA~~NR~aLl-Pt-~~Ql~~a~r~V~~aRer~~g~~~~~~l~yV~PDYY~~ 235 (363)
T TIGR02109 166 IELAIELGA-DRVELATTQYYGWALLNRAALL-PT-REQLEEATRIVEEARERLKGQGNPLSLDYVVPDYYAE 235 (363)
T ss_pred HHHHHHCCC-CEEEEEEECCHHHHHHHHHHCC-CC-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHC
T ss_conf 999986389-8488874020225677454248-98-8999999999999999986079982367634871210
No 229
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=23.09 E-value=59 Score=14.10 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCC-----------C-CHHHHHHHHH-HHCCCEEEEE
Q ss_conf 3259899999998634136899889996257-----------6-2289999997-6089577998
Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHA-----------E-TTSEKQCFAH-FVDSRASLVV 176 (274)
Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa-----------E-aTSEK~A~g~-~lDGrVsaVv 176 (274)
.+-.||..+++.++.++ ..-.+|++|-.- | +|.|+++|-. |-.|-+-+.+
T Consensus 8 ~~~~~f~~Ie~Ai~al~--~G~~Viv~Dd~dREnEgDlv~aAe~~t~e~v~fm~~~~~GliCv~~ 70 (217)
T PRK03353 8 SFGTPFERVEAALDALR--EGRGVLVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCL 70 (217)
T ss_pred HHCCCCCHHHHHHHHHH--CCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECC
T ss_conf 60897215999999998--7995999838998764068978543999999999995799788359
No 230
>CHL00066 psbH photosystem II protein H
Probab=23.05 E-value=28 Score=16.15 Aligned_cols=18 Identities=39% Similarity=0.759 Sum_probs=13.2
Q ss_pred CEEEECC--CCCCCCCCCEE
Q ss_conf 3897500--79888754079
Q gi|254780659|r 84 KFLRPAN--YPPNTPGNGSG 101 (274)
Q Consensus 84 ~ilRP~N--~p~~~PG~G~~ 101 (274)
.+|||+| |-+-+||.|.+
T Consensus 21 ~~LkplNSeyGKVaPGWGTT 40 (73)
T CHL00066 21 DLLKPLNSEYGKVAPGWGTT 40 (73)
T ss_pred HHCCCCCCCCCCCCCCCCCC
T ss_conf 31356755456335785651
No 231
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=23.04 E-value=26 Score=16.39 Aligned_cols=38 Identities=34% Similarity=0.482 Sum_probs=21.9
Q ss_pred CEEEECCCC--CCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 389750079--888754079998489928999996000058833259899999998634
Q gi|254780659|r 84 KFLRPANYP--PNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATC 140 (274)
Q Consensus 84 ~ilRP~N~p--~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~ 140 (274)
.+|||+|.. +-+||.|.+- +|| +||. + |..+--++-++
T Consensus 9 ~~LkplNSeyGKVaPGWGTTp-------------lMg-v~m~--L---f~vfl~iiLei 48 (64)
T PRK02624 9 DLLKPLNSEYGKVVPGWGTTP-------------VMA-VFMV--L---FLVFLLIILQI 48 (64)
T ss_pred HHCCCCCCCCCCCCCCCCCCH-------------HHH-HHHH--H---HHHHHHHHHHH
T ss_conf 533555554575058866758-------------999-9999--9---99999999999
No 232
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=22.84 E-value=57 Score=14.19 Aligned_cols=35 Identities=11% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHHH--CCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 80898886--0998999917004788678999999998379989
Q gi|254780659|r 21 MLPRLIRD--FQLDFVIANGENSAGGFGITEKIFCEMMETGIDV 62 (274)
Q Consensus 21 ~Lp~l~~~--~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDv 62 (274)
.+.+.+++ +++..+.+=|+ ++++.+++|.+||+|+
T Consensus 143 ~~~~~~~~ee~GL~~C~~LG~-------l~~eqa~~LKdAGld~ 179 (350)
T TIGR00433 143 AVVKIVEEEELGLKTCATLGL-------LDPEQAKQLKDAGLDR 179 (350)
T ss_pred HHHHHHHHCCCCCHHHHCCCC-------CCHHHHHHHHHCCCCC
T ss_conf 999997520037122320377-------6889999888638861
No 233
>pfam01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase.
Probab=22.67 E-value=60 Score=14.04 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEE---CCCCCCCCH---------HHHCCCCEE
Q ss_conf 98999999986341368998899962576228999999760895779980---697624654---------564036728
Q gi|254780659|r 128 DPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVG---THTHIPTAD---------AQILDGGTG 195 (274)
Q Consensus 128 ~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvG---THTHV~TaD---------~rILp~GTa 195 (274)
.-|..+.-+|.+. + ++-|||-|.--| ||.++..+| |..---+|| |+.......
T Consensus 183 ~ifsvmnyllp~~----~----vlpmHcsan~g~-------~gd~alfFGLSGTGKTTLSaDp~R~LIGDDEhgW~~~Gv 247 (451)
T pfam01293 183 SIFSVMNYLLPLK----G----VLPMHCSANVGE-------DGDVALFFGLSGTGKTTLSADPNRRLIGDDEHGWSDNGV 247 (451)
T ss_pred HHHHHHHHHCHHC----C----EEEEEEECCCCC-------CCCEEEEEECCCCCCEEEECCCCCEEECCCEEEECCCCE
T ss_conf 9999998756114----9----288751101268-------997489982167773345148886066276500268886
Q ss_pred EEECCCCCCCHHHCCCCCHH--HHHHH
Q ss_conf 98405601371210354746--78988
Q gi|254780659|r 196 YITDLGMCGDYNSSIGLDKE--EPINR 220 (274)
Q Consensus 196 yiTDvGMtG~~~SVIG~~~~--~~i~r 220 (274)
|-.. -|+|.-.|+.+++ +.|.+
T Consensus 248 fnfE---GGCYAK~i~Ls~e~EP~I~~ 271 (451)
T pfam01293 248 FNFE---GGCYAKTINLSEEKEPEIYN 271 (451)
T ss_pred EEEC---CCEEEEECCCCCCCCCHHHH
T ss_conf 9945---86463104788334732998
No 234
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.39 E-value=61 Score=14.01 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 889999998089888609989999170047886789999999983799899934
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274)
|--..+.+.+...-++++.+.++.|..+.. -.-.+..+.|.+.+||.|-.-
T Consensus 12 pf~~~i~~gie~~~~~~gy~~ll~~s~~~~---~~e~~~i~~l~~~~vdGiIi~ 62 (265)
T cd06290 12 PFYGRILKGMERGLNGSGYSPIIATGHWNQ---SRELEALELLKSRRVDALILL 62 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999999999869989999799997---999999999996599989992
No 235
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.36 E-value=61 Score=14.00 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=26.9
Q ss_pred HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE-CHHHH
Q ss_conf 8860998999917004788678999999998379989993-42653
Q gi|254780659|r 26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT-GNHVW 70 (274)
Q Consensus 26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~-GNH~w 70 (274)
.-..+||+||++... -.++.+++|.++|+.++.. +...+
T Consensus 54 il~l~PDLVi~~~~~------~~~~~~~~L~~~gi~v~~~~~~~~~ 93 (235)
T cd01149 54 VLSLKPTLVIASDEA------GPPEALDQLRAAGVPVVTVPSTPTL 93 (235)
T ss_pred HHHCCCCEEEEECCC------CHHHHHHHHHHCCCCEEECCCCCCH
T ss_conf 973799889981776------8399999999629907955898887
No 236
>PRK09206 pyruvate kinase; Provisional
Probab=22.18 E-value=61 Score=13.98 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHCCCCEEEE----CHHHHCCCCH
Q ss_conf 8999999998379989993----4265302220
Q gi|254780659|r 47 ITEKIFCEMMETGIDVITT----GNHVWDKREA 75 (274)
Q Consensus 47 it~~~~~~l~~~GvDviT~----GNH~wd~kei 75 (274)
-+++..++|+++|+||+-. |+|-|.++-+
T Consensus 15 ~~~e~L~~li~aG~~v~RiN~SHg~~e~h~~~i 47 (470)
T PRK09206 15 ESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRI 47 (470)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 999999999986998999979999999999999
No 237
>PRK05481 lipoyl synthase; Provisional
Probab=22.15 E-value=61 Score=13.98 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=3.9
Q ss_pred HHHCCCCEEEE
Q ss_conf 88609989999
Q gi|254780659|r 26 IRDFQLDFVIA 36 (274)
Q Consensus 26 ~~~~~~DfvIa 36 (274)
.++.++.+|+.
T Consensus 91 v~~m~Lk~vVi 101 (289)
T PRK05481 91 VARMGLKYVVI 101 (289)
T ss_pred HHHHCCCEEEE
T ss_conf 99828976999
No 238
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=22.08 E-value=62 Score=13.97 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.7
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 6789888516886
Q gi|254780659|r 215 EEPINRFITQIPR 227 (274)
Q Consensus 215 ~~~i~rf~t~~p~ 227 (274)
...+++.+...|.
T Consensus 177 ~~ai~~~r~~~p~ 189 (284)
T PRK06096 177 SGAINQLRRHAPE 189 (284)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999975899
No 239
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=22.00 E-value=62 Score=13.96 Aligned_cols=31 Identities=10% Similarity=-0.057 Sum_probs=23.8
Q ss_pred ECCCCCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 0478867899999999837998999342653
Q gi|254780659|r 40 NSAGGFGITEKIFCEMMETGIDVITTGNHVW 70 (274)
Q Consensus 40 Naa~G~Git~~~~~~l~~~GvDviT~GNH~w 70 (274)
+||+.++-+.+...+++++|.-.++.|-=+.
T Consensus 17 lAAG~~~~~~~~~~~~~~~G~G~vv~ktit~ 47 (299)
T cd02940 17 LASAPPTTSYPMIRRAFEAGWGGAVTKTLGL 47 (299)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCEEECCEECC
T ss_conf 7877899899999999987988899156898
No 240
>KOG0910 consensus
Probab=21.99 E-value=40 Score=15.16 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=52.7
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH-------HCCCEE-EEEECCCCCCCCHHH---HCCCCEEEEE
Q ss_conf 99999998634136899889996257622899999976-------089577-998069762465456---4036728984
Q gi|254780659|r 130 FRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHF-------VDSRAS-LVVGTHTHIPTADAQ---ILDGGTGYIT 198 (274)
Q Consensus 130 F~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~-------lDGrVs-aVvGTHTHV~TaD~r---ILp~GTayiT 198 (274)
+...+..+.+ .+. -.+||||||=-..=..|.=- +.|++- +.+-|-+|..+|+.- -+| |-.+=
T Consensus 50 ~~~~~~~Vi~----S~~-PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avP--tvlvf 122 (150)
T KOG0910 50 DSEFDDKVIN----SDV-PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVP--TVLVF 122 (150)
T ss_pred HHHHHHHHHC----CCC-CEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHCCEEEEE--EEEEE
T ss_conf 8899999874----699-8899986575743767469999987753371789997265660137646316502--89998
Q ss_pred CCCCCCCHHHCCCCCHHHHHHHHHHC
Q ss_conf 05601371210354746789888516
Q gi|254780659|r 199 DLGMCGDYNSSIGLDKEEPINRFITQ 224 (274)
Q Consensus 199 DvGMtG~~~SVIG~~~~~~i~rf~t~ 224 (274)
+=|+- .|+++|.-++.-+..++..
T Consensus 123 knGe~--~d~~vG~~~~~~l~~~i~k 146 (150)
T KOG0910 123 KNGEK--VDRFVGAVPKEQLRSLIKK 146 (150)
T ss_pred ECCEE--EEEECCCCCHHHHHHHHHH
T ss_conf 79988--6622045798999999999
No 241
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=21.97 E-value=62 Score=13.95 Aligned_cols=183 Identities=9% Similarity=0.024 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH-CCCEEEECCC
Q ss_conf 889999998089888609989999170047886789999999983799899934265302220475421-8938975007
Q gi|254780659|r 13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR-HCKFLRPANY 91 (274)
Q Consensus 13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~-~~~ilRP~N~ 91 (274)
|=-..+.+.+.+.-++++.+++|.|.++... .-.+..+.|.+.+||.|-...|..+-+ .+.+. -|-++--..+
T Consensus 12 pff~~i~~gi~~~~~~~Gy~l~i~~s~~~~~---~e~~~l~~l~~~~vDGiI~~~~~~~~~---~~~~~~iPvV~~d~~~ 85 (265)
T cd06291 12 PFFSELARAVEKELYKKGYKLILCNSDNDPE---KEREYLEMLRQNQVDGIIAGTHNLGIE---EYENIDLPIVSFDRYL 85 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCHH---HHHHCCCCEEEEECCC
T ss_conf 9999999999999998799899996899989---999999999856998587417884099---9997799999970557
Q ss_pred CCCCCCCCEEEEE-------------CCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf 9888754079998-------------489928999996000058833259899999998634136899889996257622
Q gi|254780659|r 92 PPNTPGNGSGLYC-------------AKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETT 158 (274)
Q Consensus 92 p~~~PG~G~~i~~-------------~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT 158 (274)
.+..| +...+ ..+-++|+.+.- ..-.......=+....+.+++..+ ..+.+ .++...+
T Consensus 86 ~~~~~---~V~~Dn~~~~~~a~~~L~~~Ghr~I~~i~~--~~~~~~~~~~R~~Gf~~al~~~g~--~~~~~--~~~~~~~ 156 (265)
T cd06291 86 SENIP---IVSSDNYEGGRLAAEELIERGCKHIAHIGG--PNNTVSPTNLRYEGFLDVLKENGL--EVRII--EIQENFD 156 (265)
T ss_pred CCCCC---EEEECHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCCHHHHHHHHHHHHHHHCCC--CCEEE--EECCCCC
T ss_conf 99999---899776999999999999739964999966--888874899999999999997699--96089--9768898
Q ss_pred HH--HHHHHHHHC--CCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH-HHCCCCCHHHH
Q ss_conf 89--999997608--9577998069762465456403672898405601371-21035474678
Q gi|254780659|r 159 SE--KQCFAHFVD--SRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY-NSSIGLDKEEP 217 (274)
Q Consensus 159 SE--K~A~g~~lD--GrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~-~SVIG~~~~~~ 217 (274)
.+ ..++-.+|. .+.+||+-+.-.+.- +--.+..+.|..=|- =||+|.|-.+.
T Consensus 157 ~~~~~~~~~~~l~~~~~~~Ai~~~nD~~A~-------g~~~al~~~g~~vP~disvigfDd~~~ 213 (265)
T cd06291 157 DAEKKEEIKELLEEYPDIDGIFASNDLTAI-------LVLKEAQQRGIRVPEDLQIIGYDGTKL 213 (265)
T ss_pred HHHHHHHHHHHHHCCCCCCEEECCCHHHHH-------HHHHHHHHCCCCCCCCEEEEEECCHHH
T ss_conf 699999999998559998843216689999-------999999981999999869999888099
No 242
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.94 E-value=53 Score=14.38 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=9.2
Q ss_pred HHHHHHHHHCCCCEEEECH
Q ss_conf 9999999837998999342
Q gi|254780659|r 49 EKIFCEMMETGIDVITTGN 67 (274)
Q Consensus 49 ~~~~~~l~~~GvDviT~GN 67 (274)
-+..++.++.||+.+..=.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~ 42 (211)
T COG0352 24 LEWVEAALKGGVTAVQLRE 42 (211)
T ss_pred HHHHHHHHHCCCEEEEEEC
T ss_conf 9999999967994999802
No 243
>KOG2550 consensus
Probab=21.67 E-value=63 Score=13.91 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHCCCCEEEE----CHHHHCCCCHHHHHHH
Q ss_conf 8678999999998379989993----4265302220475421
Q gi|254780659|r 44 GFGITEKIFCEMMETGIDVITT----GNHVWDKREALVFSQR 81 (274)
Q Consensus 44 G~Git~~~~~~l~~~GvDviT~----GNH~wd~kei~~~i~~ 81 (274)
-+.-.+.....|-.+|+|||-+ ||-+| |-|++.|+.+
T Consensus 248 Tre~dK~rl~ll~~aGvdvviLDSSqGnS~~-qiemik~iK~ 288 (503)
T KOG2550 248 TRDDDKERLDLLVQAGVDVVILDSSQGNSIY-QLEMIKYIKE 288 (503)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHHHHHH
T ss_conf 6630167788866348868999668885045-7999999986
No 244
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=21.52 E-value=62 Score=13.93 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=36.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC--------EEEECCEECCCCCCCCHHHHHHHH---HC-CCCEEEECHH
Q ss_conf 92699972027688999999808988860998--------999917004788678999999998---37-9989993426
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLD--------FVIANGENSAGGFGITEKIFCEMM---ET-GIDVITTGNH 68 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~D--------fvIaNgENaa~G~Git~~~~~~l~---~~-GvDviT~GNH 68 (274)
||...||||=|- .+.+++.|.++.-..+-| -+|-=|.=..-|-- +.+..+.+. +. .+-+ -.|||
T Consensus 1 m~~~VIGDIHGC--~~~L~~LL~ki~f~~~~d~~~~p~~d~LvflGDlVdRGP~-S~~vl~~v~~l~~~~~~~~-v~GNH 76 (245)
T PRK13625 1 MKYDIIGDIHGC--YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPH-SLRMIEIVWELVHKKAAYY-VPGNH 76 (245)
T ss_pred CCEEEEEECCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHCCCEEE-EECHH
T ss_conf 937899558789--8999999997086623576568887679994653278957-0999999999986598799-95807
No 245
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.47 E-value=63 Score=13.89 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=72.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274)
|+||.+|= -|.-||..+++.|. +-|++-.++=| ++.+..|...|++++. ||- -|...+..-++
T Consensus 1 M~ILV~GA-TG~lGr~vVr~Ll~---~G~~Vr~lvRn-----------p~ka~~l~~~Gve~v~-gDl-~dpesl~~Al~ 63 (319)
T CHL00194 1 MSLLVIGA-TGTLGRQIVRRALD---EGYQVKCLVRN-----------LRKAAFLKEWGAELVY-GDL-SLPETIPPALE 63 (319)
T ss_pred CEEEEECC-CCHHHHHHHHHHHH---CCCCEEEEECC-----------HHHHHHHHHCCCEEEE-ECC-CCHHHHHHHHC
T ss_conf 97999899-85899999999996---88908999578-----------6763234215967999-427-88778999965
Q ss_pred HCCCEEEECCCCCCCCCCCEE--------EEE--CCCCC-EEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 189389750079888754079--------998--48992-8999996000058833259899999998634136899889
Q gi|254780659|r 81 RHCKFLRPANYPPNTPGNGSG--------LYC--AKNGS-NVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVI 149 (274)
Q Consensus 81 ~~~~ilRP~N~p~~~PG~G~~--------i~~--~~~g~-ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i 149 (274)
..+.++-.....+..+..-+. +++ ...|. ++.-++.+|-- +....|+.......|+.-.....+..
T Consensus 64 GvdaVi~~~~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~---~~~~~p~~~~K~~~E~~L~~Sgl~~T 140 (319)
T CHL00194 64 GITAIIDASTSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAE---QYPQVPLMKIKSDIEEKLKQSGINYT 140 (319)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 996799945667788620889889889999999998499889996135666---68875677879999999986799859
Q ss_pred EEEC
Q ss_conf 9962
Q gi|254780659|r 150 VFDF 153 (274)
Q Consensus 150 ~VDf 153 (274)
++--
T Consensus 141 IlRP 144 (319)
T CHL00194 141 IFRL 144 (319)
T ss_pred EECC
T ss_conf 9847
No 246
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=21.44 E-value=63 Score=13.88 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=45.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEC-CCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH
Q ss_conf 92699972027688999999808988860998999917004-78867899999999837998999342653022204754
Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENS-AGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFS 79 (274)
Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENa-a~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i 79 (274)
|||||+= .|...|.-..+.|-+ +....++-|--+--. ..|.++.+...+-|.+.|+|.= | |.=.|-+-.++
T Consensus 3 ~kVLFVC--~gN~cRSpmAE~l~~--~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~--~-~~~k~i~~~~~- 74 (139)
T COG0394 3 MKVLFVC--TGNICRSPMAEALLR--HLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS--G-HRSKQLTEEDF- 74 (139)
T ss_pred CEEEEEE--CCCCCCCHHHHHHHH--HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC--C-CCCCCCCHHHH-
T ss_conf 6699994--997121699999999--75537869987865677889999789999998599967--8-76774765457-
Q ss_pred HHCCCEEE
Q ss_conf 21893897
Q gi|254780659|r 80 QRHCKFLR 87 (274)
Q Consensus 80 ~~~~~ilR 87 (274)
++.+.||-
T Consensus 75 ~~~DlIit 82 (139)
T COG0394 75 DEFDLIIT 82 (139)
T ss_pred HHCCEEEE
T ss_conf 44899999
No 247
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.39 E-value=61 Score=13.97 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCC
Q ss_conf 478867899999999837998999342653022204754218-9389750079
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYP 92 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p 92 (274)
+++|.||...+++.+-+.|++|+-.++--..++.+.+..++. .+.+.+++..
T Consensus 16 aa~g~Gig~aia~~~~~~Ga~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvt 68 (260)
T PRK06603 16 IANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVT 68 (260)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99966899999999998799999966867999999999984383769865799
No 248
>TIGR01873 cas_CT1978 CRISPR-associated protein Cas2; InterPro: IPR010152 This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element..
Probab=21.32 E-value=64 Score=13.87 Aligned_cols=42 Identities=24% Similarity=0.446 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHHH---HHHCCCCEEEECCEECCCC-CCCC
Q ss_conf 997202768899999980898---8860998999917004788-6789
Q gi|254780659|r 5 FLGDIVGKTGRSIVYEMLPRL---IRDFQLDFVIANGENSAGG-FGIT 48 (274)
Q Consensus 5 fiGDIvG~~Gr~~v~~~Lp~l---~~~~~~DfvIaNgENaa~G-~Git 48 (274)
|+|-.+-+.=|+-|-+.|.++ .+|- ..||+|+.|.+.| |++.
T Consensus 29 Yv~P~~~~~vr~~iwd~l~q~yG~~~~g--~~v~~wa~~t~~GG~~~~ 74 (91)
T TIGR01873 29 YVGPRVSAKVRERIWDELAQLYGCLEKG--SIVITWASNTESGGFEFA 74 (91)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCCCCCC--CEEEEECCCCCCCCCEEE
T ss_conf 2357626367888888651222534758--778874487888671233
No 249
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=21.21 E-value=64 Score=13.85 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=13.1
Q ss_pred CHHHCCCCCHHHHHHHHHHCC
Q ss_conf 712103547467898885168
Q gi|254780659|r 205 DYNSSIGLDKEEPINRFITQI 225 (274)
Q Consensus 205 ~~~SVIG~~~~~~i~rf~t~~ 225 (274)
+.+..||..++..++.++..+
T Consensus 89 ~~~~~iG~~pe~~l~~~l~aL 109 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 910353769889999999999
No 250
>PRK07831 short chain dehydrogenase; Provisional
Probab=21.12 E-value=64 Score=13.84 Aligned_cols=180 Identities=17% Similarity=0.121 Sum_probs=85.5
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC---CE-EEECCCCCCCCCCCE--EEEECCCCCEEEEEEE
Q ss_conf 88678999999998379989993426530222047542189---38-975007988875407--9998489928999996
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC---KF-LRPANYPPNTPGNGS--GLYCAKNGSNVLVANI 116 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~---~i-lRP~N~p~~~PG~G~--~i~~~~~g~ki~Vinl 116 (274)
.|.||...+++.|.+.|.+|+-.+.+.=...|...-+.++. ++ .-+++.....--.-. .+...-++.-+.|-|
T Consensus 25 sg~GIG~a~a~~la~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNN- 103 (261)
T PRK07831 25 AGTGIGSATARRALEEGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVERLGRLDVLVNN- 103 (261)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC-
T ss_conf 9647899999999987998999808777789999999984387728999756899999999999999982998699988-
Q ss_pred EHHHCCCC---------------CCCCHHHHHHHHHHHCCCCCCCCEEE-E-ECCCCC--------HHHHHH--------
Q ss_conf 00005883---------------32598999999986341368998899-9-625762--------289999--------
Q gi|254780659|r 117 MGRVFMNP---------------LLDDPFRTADKILATCPLKEQADVIV-F-DFHAET--------TSEKQC-------- 163 (274)
Q Consensus 117 ~Gr~fM~~---------------~~d~PF~~~d~~l~~~~~~~~~~~i~-V-DfHaEa--------TSEK~A-------- 163 (274)
-|.....+ .+..+|.+...+++....+..--.|+ + -..+.. .+-|-|
T Consensus 104 AG~~~~~~~~e~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~gG~IinisS~~~~~~~~~~~~Y~asKaav~~lTk~l 183 (261)
T PRK07831 104 AGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRAAPHGGVIVNNASVLGWRAQHSQAHYAAAKAGVMALTRCS 183 (261)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 86689988144999999998613215199999999999997699978984544030567887436899999999999999
Q ss_pred -HHHHHCC-CEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCC----------
Q ss_conf -9976089-5779980697624654564036728984056013712103547467898885168865411----------
Q gi|254780659|r 164 -FAHFVDS-RASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFV---------- 231 (274)
Q Consensus 164 -~g~~lDG-rVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~---------- 231 (274)
.-|--.| ||.+|.-.-+ .|+ |. + ...+++.++++....|..|+-
T Consensus 184 A~e~a~~gIrVNaI~PG~i----------------~t~--~~---~---~~~~~~~~~~~~~~~p~gR~g~pediA~~v~ 239 (261)
T PRK07831 184 AIEAAEYGVRINAVAPSIA----------------RHK--FL---K---KVTSAELLDRLASGEAFGRAAEPWEVAAVIA 239 (261)
T ss_pred HHHHHHCCCEEEEEECCCC----------------CCC--HH---H---CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 9998452908999955876----------------770--22---2---1399999999870799789759999999999
Q ss_pred --CCCCCEEEEEEEEEEE
Q ss_conf --1578719999999984
Q gi|254780659|r 232 --IANGPATLCGICAEIS 247 (274)
Q Consensus 232 --~a~g~~~l~gv~ieid 247 (274)
.++.-.-+.|.++.+|
T Consensus 240 fLaSd~s~~iTGq~i~V~ 257 (261)
T PRK07831 240 FLASDYSSYLTGEVVSVS 257 (261)
T ss_pred HHHCHHHCCCCCEEEEEC
T ss_conf 995815469757388988
No 251
>PRK12743 acetoin dehydrogenase; Provisional
Probab=21.08 E-value=46 Score=14.76 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHCCCCEE-EECHHHHCCCCHHHHHHHCCC--EEEECCCCCCCCCCCE--EEEECCCCCEEEEEEEE
Q ss_conf 886789999999983799899-934265302220475421893--8975007988875407--99984899289999960
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVI-TTGNHVWDKREALVFSQRHCK--FLRPANYPPNTPGNGS--GLYCAKNGSNVLVANIM 117 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei~~~i~~~~~--ilRP~N~p~~~PG~G~--~i~~~~~g~ki~Vinl~ 117 (274)
++.||.+.++..|.+.|.+|+ +....-=.-++..+.+++... ....++.....--+-. .+.+.-++.-+ ++|--
T Consensus 10 gs~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iDi-lVNnA 88 (253)
T PRK12743 10 SDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVVSHGVRAEIVHLDLSNLPEGAQAIEKLIQRLGRLDV-LVNNA 88 (253)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCE-EEECC
T ss_conf 58899999999999879989997489979999999999945991899990489999999999999998199989-99899
Q ss_pred HHHCCCCCCCCHHHHHHHHHH
Q ss_conf 000588332598999999986
Q gi|254780659|r 118 GRVFMNPLLDDPFRTADKILA 138 (274)
Q Consensus 118 Gr~fM~~~~d~PF~~~d~~l~ 138 (274)
|-....|..|.+....+++++
T Consensus 89 G~~~~~~~~~~~~~~w~~~~~ 109 (253)
T PRK12743 89 GAMTKAPFLDMAFDEWRKIFT 109 (253)
T ss_pred CCCCCCCCHHCCHHHHHHHHH
T ss_conf 899999800299999999999
No 252
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=21.07 E-value=43 Score=14.96 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHH-CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 25989999999863-413689988999625762289999997608957799806
Q gi|254780659|r 126 LDDPFRTADKILAT-CPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGT 178 (274)
Q Consensus 126 ~d~PF~~~d~~l~~-~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGT 178 (274)
+|--|..+-.++-+ +| -+--||.||.||.||-..--.|-
T Consensus 7 idktftv~ad~~~k~~p--------------~~~~~k~af~yyr~GmsaQs~Ge 46 (165)
T CHL00033 7 IDKTFTIVADILLKILP--------------TTSGEKEAFTYYRDGMSAQSEGE 46 (165)
T ss_pred HHHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHCCCHHHCCCC
T ss_conf 34578999988999808--------------88422889999981510101353
No 253
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.00 E-value=65 Score=13.83 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=32.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC-CEEEECCCCC
Q ss_conf 4788678999999998379989993426530222047542189-3897500798
Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC-KFLRPANYPP 93 (274)
Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~-~ilRP~N~p~ 93 (274)
+++|.||...+++.|.+.|++|+-.+.+-=.+....++..+.. .+.-+++...
T Consensus 14 aa~~~GiG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~ 67 (262)
T PRK07984 14 VASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE 67 (262)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999725999999999987999999827778999999999754982899888999
No 254
>KOG1151 consensus
Probab=20.95 E-value=24 Score=16.62 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=29.7
Q ss_pred HCCCCEE----EEECCCC----CC-CHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 4036728----9840560----13-71210354746789888516886541115787199
Q gi|254780659|r 189 ILDGGTG----YITDLGM----CG-DYNSSIGLDKEEPINRFITQIPRNRFVIANGPATL 239 (274)
Q Consensus 189 ILp~GTa----yiTDvGM----tG-~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l 239 (274)
+|.+||| -|||-|. -| +|+||.||+--.--.--.-.+|-.-|.|.+.+..+
T Consensus 602 LLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKI 661 (775)
T KOG1151 602 LLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKI 661 (775)
T ss_pred EEECCCCCCEEEEECCCHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCEEECCCCCCCC
T ss_conf 985376334167630422442157765753440221256740464483015447889855
No 255
>PRK09620 hypothetical protein; Provisional
Probab=20.62 E-value=66 Score=13.78 Aligned_cols=84 Identities=14% Similarity=0.281 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCHHH-----HHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC
Q ss_conf 999999863413689988999625762289-----999997608957799806976246545640367289840560137
Q gi|254780659|r 131 RTADKILATCPLKEQADVIVFDFHAETTSE-----KQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD 205 (274)
Q Consensus 131 ~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE-----K~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~ 205 (274)
....++|+++.. ...+.++|-|-+|+..+ ..|-.-....+..+|+--..+.--+|. ..+|+-+-. |.
T Consensus 130 ~~tpdIl~~i~~-~~~~~~lVGFkaEt~~~~e~Li~~A~~kl~~k~~D~ivAN~~~~~~~~~-----~~~~ii~~d--~~ 201 (229)
T PRK09620 130 QKAPKVLKQIKQ-WDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPHSLYSRG-----AMHYVIGQD--GK 201 (229)
T ss_pred CCCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCC-----CEEEEECCC--CC
T ss_conf 257799999872-3899869999837889678999999999997699999984876657898-----659999289--94
Q ss_pred HHHCCCCCHHHHHHHHHHC
Q ss_conf 1210354746789888516
Q gi|254780659|r 206 YNSSIGLDKEEPINRFITQ 224 (274)
Q Consensus 206 ~~SVIG~~~~~~i~rf~t~ 224 (274)
.. .-+.|+++-++.+..
T Consensus 202 ~~--~~~sK~eiA~~I~~~ 218 (229)
T PRK09620 202 GQ--LCNGKDETAKEIVKR 218 (229)
T ss_pred EE--CCCCHHHHHHHHHHH
T ss_conf 76--278999999999999
No 256
>pfam03314 DUF273 Protein of unknown function, DUF273.
Probab=20.61 E-value=20 Score=17.16 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=28.4
Q ss_pred EEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 799806976246545640367289840560137121
Q gi|254780659|r 173 SLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNS 208 (274)
Q Consensus 173 saVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~S 208 (274)
-+++|--|..+ -.|||++||+..-|.=.|.+..|
T Consensus 161 r~i~g~~~~f~--kirIlkKGtgWaRDgWLT~s~W~ 194 (222)
T pfam03314 161 RAIFGASTDFG--KVRILKKGTGWARDGWLTSSVWS 194 (222)
T ss_pred HHHHCCCCCCC--EEEEEECCCCEEECCCCCCCCCC
T ss_conf 99845235456--06886357750103421156317
No 257
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=20.61 E-value=66 Score=13.77 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99999808988860998999917004788678999999998379989993
Q gi|254780659|r 16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT 65 (274)
Q Consensus 16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~ 65 (274)
..+.+....+|++.++-..+.- | =++.+.+++|.++|||.+..
T Consensus 118 ~~i~~~v~~Vk~~~~le~c~sl------G-~l~~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 118 EEVVEAIKAVKEELGLEVCASL------G-MLTEEQAEKLADAGVDRYNH 160 (335)
T ss_pred HHHHHHHHHHHHHCCCHHHHCC------C-CCCHHHHHHHHHCCHHHEEC
T ss_conf 9999999999984692864025------8-79999999999718113303
No 258
>TIGR00504 pyro_pdase pyrrolidone-carboxylate peptidase; InterPro: IPR000816 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis.
Probab=20.48 E-value=66 Score=13.76 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=29.8
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHH-HHHHHHHCC
Q ss_conf 2027688999999808988860998999917004788678999-999998379
Q gi|254780659|r 8 DIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEK-IFCEMMETG 59 (274)
Q Consensus 8 DIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~-~~~~l~~~G 59 (274)
.++=-.=++++ +.|.++.++++||.||+=|+- -|-.-||.+ .|..+-+++
T Consensus 39 ~~~P~~F~~A~-~~l~~~i~~~~P~~vI~~G~~-PGR~~IsvERvA~N~~DAR 89 (220)
T TIGR00504 39 RILPVAFKEAL-EALRQAIDEVEPDIVIALGLA-PGRSQISVERVAINLNDAR 89 (220)
T ss_pred EECCHHHHHHH-HHHHHHHHHCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHC
T ss_conf 53552579999-999999985095448851576-7987650888877357620
No 259
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.45 E-value=66 Score=13.75 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=24.9
Q ss_pred HHHHHCCCCEEEECCEEC-------CCCCCCC--------HHHHHHHHHCCCCEEEECHHH
Q ss_conf 988860998999917004-------7886789--------999999983799899934265
Q gi|254780659|r 24 RLIRDFQLDFVIANGENS-------AGGFGIT--------EKIFCEMMETGIDVITTGNHV 69 (274)
Q Consensus 24 ~l~~~~~~DfvIaNgENa-------a~G~Git--------~~~~~~l~~~GvDviT~GNH~ 69 (274)
..+++-+.-+||..+--. .+..||. +++++.+.+.|.-++.-=+|.
T Consensus 42 y~~~rag~Glii~~~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~avH~~Ga~i~~QL~H~ 102 (362)
T PRK10605 42 YYRQRASAGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAEGGHIAVQLWHT 102 (362)
T ss_pred HHHHHCCCCEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9998678888998145888643678998865899999999999999996599348860037
No 260
>PRK12939 short chain dehydrogenase; Provisional
Probab=20.31 E-value=65 Score=13.82 Aligned_cols=107 Identities=12% Similarity=0.027 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCC--EEEECCCCCCCC-CCCEEEEECCCCCEEEEEEEEHH
Q ss_conf 886789999999983799899934265302220475421893--897500798887-54079998489928999996000
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCK--FLRPANYPPNTP-GNGSGLYCAKNGSNVLVANIMGR 119 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~--ilRP~N~p~~~P-G~G~~i~~~~~g~ki~Vinl~Gr 119 (274)
++.||...+++.|.+.|.+|+-.+...=+-++..+.+.+... ..-+++.....- =+-......+-|+-=.++|--|.
T Consensus 15 gs~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLVNNAG~ 94 (250)
T PRK12939 15 AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 36689999999999879999999698899999999999559909999924899999999999999974999799988778
Q ss_pred HCCCCC---------------CCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 058833---------------259899999998634136899889
Q gi|254780659|r 120 VFMNPL---------------LDDPFRTADKILATCPLKEQADVI 149 (274)
Q Consensus 120 ~fM~~~---------------~d~PF~~~d~~l~~~~~~~~~~~i 149 (274)
....|. +..||.....+++..+....-.+|
T Consensus 95 ~~~~~~~~~~~e~~~~~~~iNl~~~~~~~k~~~~~m~~~~~G~II 139 (250)
T PRK12939 95 TNSKSATELDIDTWDAVMNVNVRGTFLMSRAALPHLRDSGRGRIV 139 (250)
T ss_pred CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999990349999999999998299999999999999984993799
No 261
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=20.28 E-value=67 Score=13.73 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECC
Q ss_conf 76889999998089888609989999170047886789999999983799899934265302220475421893897500
Q gi|254780659|r 11 GKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPAN 90 (274)
Q Consensus 11 G~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N 90 (274)
..|--.-+.+.+.+.-++.+.+.++.|.+|...- -.+..+.|.+.+||.+-...+..+...+..+....|-++- |
T Consensus 10 ~npf~~~~~~~i~~~~~~~Gy~l~l~~s~~~~~~---e~~~l~~l~~~~vdGiIi~~~~~~~~~i~~~~~~~pvV~~--~ 84 (260)
T cd06286 10 NHPYFSQLVDGIEKAALKHGYKVVLLQTNYDKEK---ELEYLELLKTKQVDGLILCSRENDWEVIEPYTKYGPIVLC--E 84 (260)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEE--E
T ss_conf 7889999999999999986998999989999899---9999999984799999993687998999999864999999--5
Q ss_pred CCCCCCCCCEEEEE-------------CCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 79888754079998-------------48992899999600005883325989999999863413689988999625762
Q gi|254780659|r 91 YPPNTPGNGSGLYC-------------AKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAET 157 (274)
Q Consensus 91 ~p~~~PG~G~~i~~-------------~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa 157 (274)
-. ..++-.+...+ ..+-++++.+ .|..... ....=...+.+.+++..+..+.+.++-+-+...
T Consensus 85 ~~-~~~~~~~V~~Dn~~~~~~~~~~L~~~G~~~i~~i--~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~ 160 (260)
T cd06286 85 EY-DSKNISSVYIDHYEAFYEALKYLIQKGYRKIAYC--IGRKKSL-NSQSRKKAYKDALEEYGLTPDEEWIFEGCFTIE 160 (260)
T ss_pred CC-CCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCH-HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH
T ss_conf 77-8899998997869999999999997599739999--3898870-499999999999997799977303644652066
Q ss_pred HHHHHHHHHH-HCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH-HHCCCCCHHH
Q ss_conf 2899999976-089577998069762465456403672898405601371-2103547467
Q gi|254780659|r 158 TSEKQCFAHF-VDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY-NSSIGLDKEE 216 (274)
Q Consensus 158 TSEK~A~g~~-lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~-~SVIG~~~~~ 216 (274)
.+++.+--+. ..-+.+|++-+. |..-+ +--.++.+.|..=|- =||+|.+-..
T Consensus 161 ~g~~~~~~~~~~~~~p~ai~~~n------d~~A~-g~~~al~~~g~~vP~di~vigfdd~~ 214 (260)
T cd06286 161 DGERIGHQLLKMKDRPDAIFTGS------DEVAA-GIITEAKKQGIRVPEDLAIIGFDNQP 214 (260)
T ss_pred HHHHHHHHHHHCCCCCCEEEECC------HHHHH-HHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf 79999999984499987367368------99999-99999997299999976999989849
No 262
>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VIIcolicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma urealyticum (Q9PQY7 from SWISSPROT, ). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase . This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC . ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0004518 nuclease activity, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus.
Probab=20.25 E-value=67 Score=13.72 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCC-------CCHHHHHHHHHHHCCC
Q ss_conf 9999998634136899889996257-------6228999999760895
Q gi|254780659|r 131 RTADKILATCPLKEQADVIVFDFHA-------ETTSEKQCFAHFVDSR 171 (274)
Q Consensus 131 ~~~d~~l~~~~~~~~~~~i~VDfHa-------EaTSEK~A~g~~lDGr 171 (274)
..++++++++ ..|.|+|=|=- .-|..-+-||.-+.+|
T Consensus 41 ~~i~~l~ke~----~~d~~vvGlP~nM~Gt~g~~~~~~~kFA~r~~~~ 84 (133)
T TIGR00250 41 SRIEELLKEW----KVDKIVVGLPLNMDGTVGPLTKRAQKFAKRLEGR 84 (133)
T ss_pred HHHHHHHHHC----CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999987315----8897886178787887250268889999886554
No 263
>PRK13132 consensus
Probab=20.21 E-value=67 Score=13.72 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHH----HC-----------------CCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEE
Q ss_conf 789999999983799899934265----30-----------------222047542189389750079888754079998
Q gi|254780659|r 46 GITEKIFCEMMETGIDVITTGNHV----WD-----------------KREALVFSQRHCKFLRPANYPPNTPGNGSGLYC 104 (274)
Q Consensus 46 Git~~~~~~l~~~GvDviT~GNH~----wd-----------------~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~ 104 (274)
--|.+..+.|-++|+|+|-.|=-- -| -+++++.+.+- |
T Consensus 25 e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~i----r----------------- 83 (246)
T PRK13132 25 ETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARV----K----------------- 83 (246)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----C-----------------
T ss_conf 9999999999974999899789888876558999999999987799899999999975----3-----------------
Q ss_pred CCCCCEEEEEEEEHHHCCCCCCCCHHHH--HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 4899289999960000588332598999--999986341368998-8999625762289999997608957799806976
Q gi|254780659|r 105 AKNGSNVLVANIMGRVFMNPLLDDPFRT--ADKILATCPLKEQAD-VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTH 181 (274)
Q Consensus 105 ~~~g~ki~Vinl~Gr~fM~~~~d~PF~~--~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTH 181 (274)
.... -++|. + -||+.. .+++++++.. ...| .|++|+--|-..|=...+.-.+-...-.+-
T Consensus 84 --~~~p--------ivlM~-Y-~N~i~~~G~e~F~~~~~~-~GvdGlIipDLP~ee~~~~~~~~~~~~i~~I~lva---- 146 (246)
T PRK13132 84 --TKKA--------LVFLV-Y-YNLIFAYGLEKFVKKAKE-LGISGLIVPDLPFEESEELIKECEKYNIALIPLIS---- 146 (246)
T ss_pred --CCCC--------EEEEE-E-CHHHHHCCHHHHHHHHHH-CCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC----
T ss_conf --6999--------79996-0-108877299999999987-69985775799978989999999985997014425----
Q ss_pred CCCCHHHH---CC--CCEEE-EECCCCCCCHHHCCCCCHHHHHHHH
Q ss_conf 24654564---03--67289-8405601371210354746789888
Q gi|254780659|r 182 IPTADAQI---LD--GGTGY-ITDLGMCGDYNSSIGLDKEEPINRF 221 (274)
Q Consensus 182 V~TaD~rI---Lp--~GTay-iTDvGMtG~~~SVIG~~~~~~i~rf 221 (274)
||.++|+ +. .|=-| ++=.|-||..... --.-...++|.
T Consensus 147 -PTs~~R~~~i~~~s~gfiY~vs~~GvTG~~~~~-~~~~~~~i~~i 190 (246)
T PRK13132 147 -VTSPKRAKKILKHAKGFIYALGSIGVTGTKSVE-EARLKDKVKEI 190 (246)
T ss_pred -CCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-HHHHHHHHHHH
T ss_conf -797899999995489827997535677776663-68899999999
No 264
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=20.17 E-value=67 Score=13.71 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEE--ECHHHHCCCCHHHHHHHCC--CEEE
Q ss_conf 68899999980898886099899991700478867899999999837998999--3426530222047542189--3897
Q gi|254780659|r 12 KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVIT--TGNHVWDKREALVFSQRHC--KFLR 87 (274)
Q Consensus 12 ~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT--~GNH~wd~kei~~~i~~~~--~ilR 87 (274)
.|--..+.+.+...-++++.+++|.|.++... .-.+..+.|.+.+||.+- .++.. ..+.+..+.+.. -++-
T Consensus 11 npf~~~~~~gie~~~~~~Gy~~~i~~t~~~~~---~e~~~i~~l~~~~vdGiIi~~~~~~--~~~~~~~l~~~~iPvV~~ 85 (266)
T cd06282 11 NPVFAECVQGIQEEARAAGYSLLLATTDYDAE---READAVETLLRQRVDGLILTVADAA--TSPALDLLDAERVPYVLA 85 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEEECCCCC--CHHHHHHHHHCCCCEEEE
T ss_conf 88999999999999998799899997999979---9999999999659987999637877--559999998559978999
Q ss_pred ECCCCCCCCCCCEEE-------------EECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 500798887540799-------------9848992899999600005883325989999999863413689988999625
Q gi|254780659|r 88 PANYPPNTPGNGSGL-------------YCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFH 154 (274)
Q Consensus 88 P~N~p~~~PG~G~~i-------------~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfH 154 (274)
-+-+ .++.-+.. +-.++-++++.+. |...-......=.....+.+++..+. ....+.++++
T Consensus 86 -~~~~--~~~~~~V~~Dn~~~~~~~~~~L~~~G~~~i~~i~--~~~~~~~~~~~R~~Gf~~a~~~~~~~-~~~~~~~~~~ 159 (266)
T cd06282 86 -YNDP--QPGRPSVSVDNRAAARDVAQALAALGHRRIAMLA--GRLAASDRARQRYAGYRAAMRAAGLA-PLPPVEIPFN 159 (266)
T ss_pred -ECCC--CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCHHHHHHHHHHHHHHHHCCCC-CCCEEEECCC
T ss_conf -5047--8999989988799999999999973995699997--77888868999999999999986999-7617993487
Q ss_pred CCCHHHHHHHHHHH--CCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC-HHHCCCCCHH
Q ss_conf 76228999999760--8957799806976246545640367289840560137-1210354746
Q gi|254780659|r 155 AETTSEKQCFAHFV--DSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKE 215 (274)
Q Consensus 155 aEaTSEK~A~g~~l--DGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~-~~SVIG~~~~ 215 (274)
.+...+ ++..+| .-+.+||+-+.--+.-. --.++.+.|..=| -=||+|.|-.
T Consensus 160 ~~~~~~--~~~~~l~~~~~~~ai~~~nD~~A~g-------~l~al~~~g~~vP~disIigfd~~ 214 (266)
T cd06282 160 TAALPS--ALLALLTAHPAPTAIFCSNDLLALA-------VIRALRRLGLRVPDDLSVVGFDGI 214 (266)
T ss_pred HHHHHH--HHHHHHHCCCCCCEEEECCCHHHHH-------HHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 268999--9999983799984798538889999-------999999849999998499998970
No 265
>PRK05717 oxidoreductase; Validated
Probab=20.06 E-value=68 Score=13.70 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCC
Q ss_conf 88678999999998379989993426530222047542189389750079
Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP 92 (274)
Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p 92 (274)
++.||...++++|.+.|.+|+-.+...=.-.++...+.+.. ...+++..
T Consensus 18 ~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~-~~~~~Dvt 66 (255)
T PRK05717 18 AARGIGLGIAAWLIAEGWQVVLADLDRERGAKVAKALGENA-WFIAMDVA 66 (255)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCE-EEEEEECC
T ss_conf 78889999999999879989999698899999999848975-89993079
No 266
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=20.06 E-value=68 Score=13.70 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=28.6
Q ss_pred HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 8860998999917004788678999999998379989993426530
Q gi|254780659|r 26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD 71 (274)
Q Consensus 26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd 71 (274)
.-..+||+||+... +-..+..++|.++|+.|+.+--++++
T Consensus 73 IlaL~PDLVia~~~------~~~~~~~~~L~~~GI~v~~~~~~sl~ 112 (265)
T PRK03379 73 IVALKPDLVLAWRG------GNAERQVDQLASLGIKVMWVDATSIE 112 (265)
T ss_pred HHHHCCCEEEEECC------CCCHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 99639998999568------89589999998169758835999999
Done!