Query         gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 274
No_of_seqs    135 out of 850
Neff          4.4 
Searched_HMMs 39220
Date          Sun May 29 20:41:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780659.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG1692 Calcineurin-like phosp 100.0       0       0  809.4  26.3  266    1-270     1-266 (266)
  2 TIGR00282 TIGR00282 conserved  100.0       0       0  444.4  17.0  257    1-261     1-263 (272)
  3 PRK09558 ushA bifunctional UDP  99.1 1.6E-08 4.2E-13   76.0  16.6  180    2-182    36-256 (551)
  4 pfam09587 PGA_cap Bacterial ca  99.1 1.7E-08 4.2E-13   76.0  16.1  181    2-189     1-221 (237)
  5 smart00854 PGA_cap Bacterial c  99.1 1.9E-08 4.8E-13   75.6  16.3  174    2-189     1-223 (239)
  6 COG0737 UshA 5'-nucleotidase/2  98.7 2.6E-06 6.7E-11   61.7  15.8  194   13-210    52-275 (517)
  7 PRK09419 bifunctional 2',3'-cy  98.7 5.3E-06 1.3E-10   59.8  16.1  186    1-190   666-903 (1260)
  8 pfam00149 Metallophos Calcineu  98.2   3E-05 7.5E-10   54.9  11.4  170    1-183     1-186 (186)
  9 PRK09419 bifunctional 2',3'-cy  97.5  0.0075 1.9E-07   39.3  13.7  168   13-182    69-283 (1260)
 10 PRK09420 cpdB bifunctional 2',  97.5  0.0023 5.9E-08   42.7  10.8  131   50-183    30-192 (578)
 11 PRK09418 bifunctional 2',3'-cy  97.2   0.026 6.5E-07   35.9  13.8  187   13-211    66-310 (780)
 12 KOG4419 consensus               97.0   0.018 4.6E-07   36.9  10.8  200   15-216    71-319 (602)
 13 TIGR01530 nadN NAD nucleotidas  96.5   0.019 4.9E-07   36.7   7.7  165   13-189    32-224 (550)
 14 PRK11907 bifunctional 2',3'-cy  95.7    0.22 5.6E-06   29.8  13.3  218   12-240   141-416 (810)
 15 PRK02083 imidazole glycerol ph  93.2    0.81 2.1E-05   26.2   8.5   98    4-110    47-149 (253)
 16 PRK05581 ribulose-phosphate 3-  92.7    0.61 1.6E-05   26.9   6.8   59  125-191    69-130 (220)
 17 PRK08091 ribulose-phosphate 3-  92.0    0.32 8.2E-06   28.7   4.7   55  125-186    76-142 (235)
 18 TIGR03572 WbuZ glycosyl amidat  91.0     1.5 3.7E-05   24.5   8.9   94    3-104    46-144 (232)
 19 PRK02621 consensus              90.9     1.5 3.8E-05   24.4   9.0   95    3-105    46-146 (254)
 20 PRK08005 ribulose-phosphate 3-  90.6    0.64 1.6E-05   26.8   5.1   52  125-183    66-120 (210)
 21 PRK11340 phosphodiesterase Yae  90.0     1.8 4.5E-05   24.0   9.7  152    1-183    49-213 (270)
 22 PRK09722 allulose-6-phosphate   90.0       1 2.6E-05   25.5   5.7   54  126-186    66-123 (227)
 23 PRK08883 ribulose-phosphate 3-  89.5     1.6   4E-05   24.3   6.4   58  126-191    67-127 (220)
 24 PRK02747 consensus              89.1     2.1 5.3E-05   23.5   6.8   99    3-110    46-152 (257)
 25 PRK08745 ribulose-phosphate 3-  88.7     2.1 5.3E-05   23.5   6.5   53  126-185    71-126 (223)
 26 COG2129 Predicted phosphoester  88.7     2.2 5.6E-05   23.3   9.0  178    1-214     4-192 (226)
 27 PRK05437 isopentenyl pyrophosp  88.6     1.7 4.3E-05   24.1   6.0   22   44-65    195-216 (351)
 28 PRK02145 consensus              87.9     2.5 6.3E-05   23.0   6.7   93    3-104    47-148 (257)
 29 cd02811 IDI-2_FMN Isopentenyl-  87.7     1.8 4.5E-05   24.0   5.7   18   46-63    189-206 (326)
 30 PRK11439 pphA serine/threonine  87.4     2.4   6E-05   23.1   6.2   72    2-80     18-89  (218)
 31 PRK03220 consensus              87.2     2.7 6.9E-05   22.7   6.4  132    3-160    47-188 (257)
 32 cd00429 RPE Ribulose-5-phospha  87.0     1.9 4.8E-05   23.8   5.5   55  125-186    65-122 (211)
 33 PRK13586 1-(5-phosphoribosyl)-  86.8     2.2 5.5E-05   23.4   5.7  125    3-159    45-173 (231)
 34 cd04731 HisF The cyclase subun  86.2     2.4 6.1E-05   23.1   5.6   93    3-104    43-140 (243)
 35 PRK00748 1-(5-phosphoribosyl)-  86.0     3.2   8E-05   22.3   6.2   71    3-81     45-117 (241)
 36 KOG3111 consensus               85.5     1.5 3.7E-05   24.5   4.3   54  125-185    72-128 (224)
 37 PRK00166 apaH diadenosine tetr  85.3     2.9 7.3E-05   22.6   5.7   65    1-69      1-67  (275)
 38 pfam00834 Ribul_P_3_epim Ribul  84.5     2.5 6.5E-05   22.9   5.1   59  125-191    65-126 (201)
 39 PRK01033 imidazole glycerol ph  84.3     3.8 9.6E-05   21.8   6.4   87    3-97     46-137 (253)
 40 PTZ00170 D-ribulose-5-phosphat  83.3     1.1 2.9E-05   25.2   2.9   58  125-189    71-131 (224)
 41 PRK09453 phosphodiesterase; Pr  83.3     4.1 0.00011   21.6   8.0   96    1-115     1-104 (183)
 42 TIGR02151 IPP_isom_2 isopenten  80.6     1.4 3.5E-05   24.7   2.5   44   18-66    176-219 (349)
 43 PRK13597 imidazole glycerol ph  79.2     5.7 0.00015   20.7   6.4   81    3-91     47-132 (252)
 44 pfam00875 DNA_photolyase DNA p  78.2     1.6 4.2E-05   24.2   2.3   49   20-68     78-126 (164)
 45 PRK04281 consensus              77.7     6.3 0.00016   20.4   6.0   93    4-104    47-145 (254)
 46 TIGR01163 rpe ribulose-phospha  77.2     2.8 7.1E-05   22.7   3.2   36   46-81    177-214 (216)
 47 PRK13127 consensus              77.0     6.6 0.00017   20.2   5.5   48   22-70     79-126 (262)
 48 pfam00977 His_biosynth Histidi  76.2     6.9 0.00018   20.1   6.3   81    3-91     45-130 (229)
 49 pfam01993 MTD methylene-5,6,7,  74.1     7.9  0.0002   19.8   5.6  115   13-152    42-177 (276)
 50 PRK09968 serine/threonine-spec  73.7       8  0.0002   19.7   6.1   64    2-69     16-79  (218)
 51 pfam01522 Polysacc_deac_1 Poly  73.7       8  0.0002   19.7   4.9   54   15-76     17-71  (123)
 52 PRK00830 consensus              73.2     7.4 0.00019   19.9   4.6   81    3-91     50-135 (273)
 53 COG0036 Rpe Pentose-5-phosphat  71.3     4.1 0.00011   21.6   2.9   55  125-186    69-126 (220)
 54 PRK05211 consensus              70.8     9.3 0.00024   19.3   6.6   80    3-90     37-121 (248)
 55 COG1927 Mtd Coenzyme F420-depe  70.5     9.5 0.00024   19.2   6.0  115   13-152    43-178 (277)
 56 pfam01884 PcrB PcrB family. Th  69.6     5.6 0.00014   20.7   3.3   53   46-100    19-78  (231)
 57 PRK05096 guanosine 5'-monophos  69.1      10 0.00026   19.0   5.6   41   16-63    136-176 (347)
 58 PRK01659 consensus              69.0      10 0.00026   19.0   5.9   80    4-91     47-131 (252)
 59 COG1407 Predicted ICC-like pho  68.8      10 0.00026   19.0   6.0   56   14-69     47-108 (235)
 60 CHL00200 trpA tryptophan synth  68.6      10 0.00027   19.0   5.9   23   45-67     28-50  (263)
 61 PRK00994 F420-dependent methyl  68.2      11 0.00027   18.9   5.5  112   14-151    44-176 (276)
 62 PRK13129 consensus              64.8      12 0.00031   18.5   5.9   47   17-67      5-54  (267)
 63 PRK06256 biotin synthase; Vali  64.6      12  0.0003   18.6   4.1   41   16-63    125-165 (325)
 64 PRK06512 thiamine-phosphate py  63.4     5.5 0.00014   20.7   2.3   22   55-76     35-57  (221)
 65 cd03823 GT1_ExpE7_like This fa  63.3      13 0.00033   18.3   5.2   40   19-63     85-124 (359)
 66 PHA02239 putative protein phos  62.8      13 0.00034   18.3   6.9   77    1-83      1-82  (235)
 67 TIGR00078 nadC nicotinate-nucl  61.3     7.7  0.0002   19.8   2.7   44   17-67    219-262 (276)
 68 COG0287 TyrA Prephenate dehydr  60.4      15 0.00038   18.0   6.6  133   47-204    14-148 (279)
 69 cd04732 HisA HisA.  Phosphorib  59.7      15 0.00039   17.9   6.3   81    3-91     45-130 (234)
 70 TIGR00040 yfcE phosphodiestera  59.0      16  0.0004   17.8   5.7   64    1-68      1-65  (170)
 71 COG1411 Uncharacterized protei  58.2      16 0.00041   17.8   5.4  132    1-160     1-166 (229)
 72 PRK13790 phosphoribosylamine--  58.0      16 0.00041   17.7   4.9   86   11-101    33-155 (415)
 73 cd02922 FCB2_FMN Flavocytochro  57.3      17 0.00042   17.7   4.8   16   45-60    130-145 (344)
 74 TIGR01768 GGGP-family geranylg  57.0     9.3 0.00024   19.3   2.5   32   44-75    201-233 (242)
 75 TIGR01788 Glu-decarb-GAD gluta  56.8      11 0.00029   18.7   2.9   51  107-159   200-251 (493)
 76 TIGR01421 gluta_reduc_1 glutat  56.7      14 0.00035   18.2   3.3   65    2-69    320-399 (475)
 77 PRK13426 F0F1 ATP synthase sub  56.0       4  0.0001   21.7   0.5   14  127-140    93-106 (289)
 78 pfam01935 DUF87 Domain of unkn  54.4      15 0.00037   18.0   3.2   15   49-63     41-56  (218)
 79 PRK04128 1-(5-phosphoribosyl)-  54.2      19 0.00047   17.3   5.8  125    3-160    45-171 (228)
 80 PRK05621 F0F1 ATP synthase sub  52.9     6.1 0.00015   20.5   1.0   14  127-140    93-106 (287)
 81 PRK07695 transcriptional regul  52.5     7.9  0.0002   19.8   1.5  147   50-224    18-170 (202)
 82 PRK13422 F0F1 ATP synthase sub  51.8     5.8 0.00015   20.6   0.8   19  163-181   159-177 (298)
 83 TIGR03323 alt_F1F0_F1_gam alte  51.4     6.4 0.00016   20.3   0.9   13  128-140    90-102 (285)
 84 PRK04169 geranylgeranylglycery  51.1      13 0.00033   18.4   2.5   70   52-138    24-99  (229)
 85 PRK13131 consensus              51.0      21 0.00053   17.0   5.8  158   46-223    25-195 (257)
 86 TIGR02183 GRXA Glutaredoxin, G  50.4      21 0.00053   17.0   3.4   41  116-160     4-44  (86)
 87 COG1069 AraB Ribulose kinase [  50.1     7.2 0.00018   20.0   1.0   51  148-210   251-302 (544)
 88 cd00564 TMP_TenI Thiamine mono  50.1      22 0.00055   16.9   4.0  150   49-224    15-171 (196)
 89 cd02812 PcrB_like PcrB_like pr  49.9      14 0.00035   18.2   2.4   70   53-139    19-95  (219)
 90 TIGR01146 ATPsyn_F1gamma ATP s  49.5     4.8 0.00012   21.1   0.1   27  192-225    81-110 (330)
 91 PRK13427 F0F1 ATP synthase sub  48.7     9.2 0.00023   19.3   1.4   14  128-141    95-108 (286)
 92 PRK13425 F0F1 ATP synthase sub  48.6     6.6 0.00017   20.2   0.7   19  163-181   160-178 (291)
 93 pfam00231 ATP-synt ATP synthas  48.6     7.3 0.00019   20.0   0.9   14  127-140    93-106 (288)
 94 PRK13126 consensus              47.8      23  0.0006   16.7   5.6   72  128-206    78-161 (237)
 95 KOG0685 consensus               47.4      11 0.00029   18.7   1.7   67    2-74     23-91  (498)
 96 pfam10150 RNase_E_G Ribonuclea  47.1      22 0.00056   16.9   3.1  149   14-167    55-240 (271)
 97 cd04962 GT1_like_5 This family  47.0      24 0.00061   16.6   5.2   19   19-37     73-91  (371)
 98 pfam02702 KdpD Osmosensitive K  46.6      18 0.00047   17.4   2.6   28   53-80     27-54  (211)
 99 TIGR02624 rhamnu_1P_ald rhamnu  46.5      22 0.00056   16.9   3.0   43   50-92     15-59  (273)
100 PRK13424 F0F1 ATP synthase sub  46.4     7.8  0.0002   19.8   0.7   13  164-176   158-170 (291)
101 cd04723 HisA_HisF Phosphoribos  46.3      25 0.00063   16.5   5.2   71    3-81     51-122 (233)
102 PRK08618 ornithine cyclodeamin  45.5      21 0.00054   17.0   2.8   11  104-114    91-101 (325)
103 PRK00346 surE stationary phase  44.8      26 0.00066   16.4   3.6   47    1-50      1-48  (246)
104 PRK09454 ugpQ cytoplasmic glyc  44.7      20 0.00052   17.1   2.7   94   48-154    24-117 (249)
105 COG1433 Uncharacterized conser  44.7      26 0.00066   16.4   4.9   37   22-66     57-93  (121)
106 COG0157 NadC Nicotinate-nucleo  44.6      22 0.00057   16.8   2.9   15  213-227   173-187 (280)
107 KOG0566 consensus               44.6      13 0.00034   18.3   1.7   43   13-56    293-335 (1080)
108 PRK05784 phosphoribosylamine--  44.3      26 0.00067   16.4   5.2   80   20-102    59-162 (485)
109 COG1646 Predicted phosphate-bi  44.0      20 0.00051   17.2   2.5   76   21-100     7-89  (240)
110 PRK05742 nicotinate-nucleotide  43.8      24 0.00061   16.6   2.9   26  202-227   156-189 (277)
111 PRK06543 nicotinate-nucleotide  43.7      25 0.00063   16.5   2.9   14  214-227   179-192 (281)
112 PRK06079 enoyl-(acyl carrier p  43.4      22 0.00056   16.9   2.7   28   41-68     15-42  (252)
113 PRK13934 stationary phase surv  43.3      27  0.0007   16.3   3.8  174    1-198     1-209 (266)
114 cd02202 FtsZ_type2 FtsZ is a G  43.1      24  0.0006   16.7   2.8   38    1-40      1-41  (349)
115 pfam04309 G3P_antiterm Glycero  43.0      28 0.00071   16.2   5.1   26   42-67    144-169 (174)
116 PRK05848 nicotinate-nucleotide  42.8      26 0.00065   16.4   2.9   13  214-226   167-179 (272)
117 PRK13423 F0F1 ATP synthase sub  42.2      11 0.00028   18.9   0.9   15  127-141    93-107 (286)
118 PRK13585 1-(5-phosphoribosyl)-  41.9      29 0.00073   16.1   5.4   81    3-91     47-132 (240)
119 KOG2872 consensus               41.8      29 0.00074   16.1   4.3   66   15-92    237-302 (359)
120 PRK08385 nicotinate-nucleotide  41.5      28  0.0007   16.2   2.9   11  216-226   172-182 (279)
121 COG1060 ThiH Thiamine biosynth  41.2      29 0.00075   16.0   3.7   66    2-68    109-180 (370)
122 cd03794 GT1_wbuB_like This fam  41.0      30 0.00076   16.0   7.3   45  214-258   313-361 (394)
123 LOAD_HisDeac1 consensus         40.6      30 0.00077   16.0   5.2   65  126-203   139-206 (295)
124 PRK06559 nicotinate-nucleotide  40.5      29 0.00074   16.1   2.9   42   51-94     41-82  (290)
125 PRK06106 nicotinate-nucleotide  40.3      30 0.00076   16.0   2.9   13  214-226   178-190 (281)
126 PRK06978 nicotinate-nucleotide  40.1      30 0.00077   16.0   2.9   12  202-213   166-177 (288)
127 PRK08159 enoyl-(acyl carrier p  40.0      27 0.00068   16.3   2.7   52   41-92     18-70  (272)
128 pfam00850 Hist_deacetyl Histon  40.0      31 0.00078   15.9   5.1   84  127-225   131-223 (302)
129 PRK07533 enoyl-(acyl carrier p  39.9      31 0.00079   15.9   3.4   52   41-92     14-66  (254)
130 PRK07428 nicotinate-nucleotide  39.9      31 0.00078   15.9   3.0   14  214-227   179-192 (285)
131 COG1089 Gmd GDP-D-mannose dehy  39.7      18 0.00045   17.5   1.7   22  113-134    82-103 (345)
132 PRK11148 cyclic 3',5'-adenosin  39.7      31 0.00079   15.9   4.9  216    1-260    15-262 (275)
133 cd01572 QPRTase Quinolinate ph  39.5      31  0.0008   15.9   3.0   13  214-226   168-180 (268)
134 PRK07896 nicotinate-nucleotide  39.4      31  0.0008   15.9   2.9   14  214-227   185-198 (288)
135 pfam09347 DUF1989 Domain of un  39.4      31  0.0008   15.9   2.9   92   96-219     6-97  (167)
136 PRK07107 inositol-5-monophosph  38.9      32 0.00081   15.8   4.9   32   50-81    245-279 (497)
137 cd01143 YvrC Periplasmic bindi  38.8      32 0.00082   15.8   4.5   39   26-71     56-95  (195)
138 pfam02844 GARS_N Phosphoribosy  38.5      32 0.00083   15.8   4.1   15   26-40     57-71  (99)
139 PRK09016 quinolinate phosphori  38.4      32 0.00082   15.8   2.9   13  214-226   195-207 (296)
140 TIGR00580 mfd transcription-re  38.1      33 0.00084   15.7   5.4   95  109-224   562-660 (997)
141 PRK08255 salicylyl-CoA 5-hydro  37.7      33 0.00085   15.7   2.9   45    1-48      1-45  (770)
142 PRK00087 4-hydroxy-3-methylbut  37.7      24 0.00061   16.6   2.1  127   43-180    73-217 (670)
143 cd01568 QPRTase_NadC Quinolina  37.3      34 0.00086   15.7   3.3   13  214-226   167-179 (269)
144 TIGR01743 purR_Bsub pur operon  37.2     6.4 0.00016   20.3  -0.9   28  184-211    90-117 (269)
145 PRK13122 consensus              37.2      34 0.00087   15.6   5.4   88  128-222    85-182 (242)
146 cd03822 GT1_ecORF704_like This  37.1      34 0.00087   15.6   5.6   73  116-191   190-274 (366)
147 PRK13931 stationary phase surv  36.7      29 0.00074   16.1   2.4  206    1-227     1-243 (261)
148 TIGR03425 urea_degr_2 urea car  36.6      16 0.00042   17.7   1.1   94   93-217     5-98  (233)
149 pfam00478 IMPDH IMP dehydrogen  36.4      35 0.00089   15.6   5.3   33   49-81    225-260 (467)
150 cd06070 H2MP_like-2 Putative [  36.3      35 0.00089   15.6   3.1   52   43-99     13-65  (140)
151 PRK09213 purine operon repress  36.3      11 0.00028   18.9   0.2   10  189-198    97-106 (274)
152 cd00851 MTH1175 This uncharact  35.9      35 0.00091   15.5   4.9   34   24-65     57-90  (103)
153 pfam10761 DUF2590 Protein of u  35.8      17 0.00043   17.6   1.1   17  184-201    65-81  (103)
154 PRK09140 2-dehydro-3-deoxy-6-p  35.6      36 0.00092   15.5   3.7  129   19-179    49-181 (206)
155 PRK13935 stationary phase surv  35.5      36 0.00092   15.5   3.1  202    1-226     1-231 (255)
156 PRK05458 guanosine 5'-monophos  35.2      36 0.00093   15.4   6.0   15   48-62    150-164 (326)
157 cd02930 DCR_FMN 2,4-dienoyl-Co  35.2      37 0.00093   15.4   6.4   52   14-66    186-244 (353)
158 cd04724 Tryptophan_synthase_al  34.9      37 0.00094   15.4   5.6  150   19-178    65-216 (242)
159 COG0224 AtpG F0F1-type ATP syn  34.8      13 0.00033   18.4   0.3   37   94-142    69-105 (287)
160 TIGR02253 CTE7 HAD superfamily  34.6      37 0.00095   15.4   3.4   57   18-83    118-180 (244)
161 PRK10490 sensor protein KdpD;   34.5      34 0.00086   15.7   2.5   51   29-79    101-157 (895)
162 TIGR01422 phosphonatase phosph  33.9      38 0.00097   15.3   2.8   38   26-63    136-173 (199)
163 PRK00043 thiE thiamine-phospha  33.6      39 0.00099   15.3   4.0   42   49-90     23-64  (210)
164 COG1409 Icc Predicted phosphoh  33.6      39 0.00099   15.3   5.4  171    1-185     1-195 (301)
165 TIGR01800 cit_synth_II 2-methy  33.4      14 0.00037   18.1   0.4   15   75-89    355-369 (386)
166 PRK12330 oxaloacetate decarbox  33.2      39   0.001   15.2   5.3   65    3-69    171-235 (499)
167 PRK08594 enoyl-(acyl carrier p  33.2      33 0.00084   15.7   2.2   53   41-93     14-69  (256)
168 CHL00076 chlB photochlorophyll  33.2      39   0.001   15.2   3.9   69    5-76     60-133 (510)
169 PRK08072 nicotinate-nucleotide  33.2      39   0.001   15.2   2.9   12  214-225   174-185 (277)
170 PRK00216 ubiE ubiquinone/menaq  32.9      17 0.00043   17.6   0.7   21   60-80     28-48  (239)
171 pfam08267 Meth_synt_1 Cobalami  32.6      25 0.00064   16.5   1.6   32   41-72     34-66  (310)
172 KOG3669 consensus               32.5      40   0.001   15.2   3.5  141   54-220   477-629 (705)
173 pfam01729 QRPTase_C Quinolinat  32.0      41   0.001   15.1   5.9   56   18-81     66-123 (169)
174 TIGR02683 upstrm_HI1419 probab  32.0      38 0.00097   15.3   2.4   22   96-118    54-75  (95)
175 cd03786 GT1_UDP-GlcNAc_2-Epime  31.9      41   0.001   15.1   2.9   48   23-73     81-128 (363)
176 PRK02910 light-independent pro  31.8      38 0.00098   15.3   2.4   59    7-76     62-131 (524)
177 cd01573 modD_like ModD; Quinol  31.4      42  0.0011   15.1   2.9   16  212-227   168-183 (272)
178 PRK07455 keto-hydroxyglutarate  31.4      42  0.0011   15.0   2.7  126   20-179    53-183 (210)
179 COG2205 KdpD Osmosensitive K+   31.3      35  0.0009   15.5   2.1  136   30-177   100-284 (890)
180 PRK13125 trpA tryptophan synth  31.2      42  0.0011   15.0   5.9  161    9-223    12-184 (247)
181 pfam02593 DUF166 Uncharacteriz  30.8      43  0.0011   15.0   4.7   99  111-224    24-126 (215)
182 KOG0884 consensus               30.4      44  0.0011   14.9   5.6   74   65-145    62-139 (161)
183 TIGR01704 MTA/SAH-Nsdase MTA/S  30.2      33 0.00085   15.7   1.9   50   23-82     59-108 (229)
184 PRK13587 1-(5-phosphoribosyl)-  29.9      44  0.0011   14.9   3.0   70    4-81     49-120 (234)
185 PRK06505 enoyl-(acyl carrier p  29.5      38 0.00096   15.3   2.0   53   41-93     15-68  (271)
186 PRK08415 enoyl-(acyl carrier p  29.0      46  0.0012   14.8   3.5   53   41-93     13-66  (274)
187 PRK13136 consensus              28.7      47  0.0012   14.8   6.3   94  120-221    92-193 (253)
188 cd02933 OYE_like_FMN Old yello  28.7      47  0.0012   14.7   4.8   15  127-141   199-213 (338)
189 PRK13124 consensus              28.4      47  0.0012   14.7   5.3  158   45-222    22-191 (257)
190 cd01494 AAT_I Aspartate aminot  28.3      33 0.00083   15.7   1.5   47   16-67      3-49  (170)
191 COG2720 Uncharacterized vancom  27.9      48  0.0012   14.7   2.7   45   26-70    214-262 (376)
192 pfam10686 DUF2493 Protein of u  27.6      49  0.0012   14.6   5.5   60    1-65      4-63  (71)
193 PRK13530 arsenate reductase; P  27.6      49  0.0012   14.6   6.5   62    2-72      5-66  (133)
194 KOG2738 consensus               27.3      49  0.0012   14.6   2.3   25  250-274   306-331 (369)
195 PRK00005 fmt methionyl-tRNA fo  27.2      49  0.0013   14.6   6.8   89    1-96      1-92  (309)
196 cd02932 OYE_YqiM_FMN Old yello  27.2      49  0.0013   14.6   4.3   43   26-68     42-99  (336)
197 cd01480 vWA_collagen_alpha_1-V  26.8      50  0.0013   14.5   3.7   27    3-29      5-34  (186)
198 PRK07370 enoyl-(acyl carrier p  26.7      37 0.00094   15.4   1.6   25   41-65     15-39  (259)
199 PRK00103 SPOUT methyltransfera  26.6      51  0.0013   14.5   4.6   80    1-81      3-91  (156)
200 PRK08575 5-methyltetrahydropte  26.4      32 0.00082   15.8   1.2   29   43-71     37-65  (320)
201 PRK06523 short chain dehydroge  25.9      39   0.001   15.2   1.6   26   43-68     17-42  (260)
202 PRK12305 thrS threonyl-tRNA sy  25.9      36 0.00092   15.5   1.4   48  214-262   379-428 (576)
203 pfam01209 Ubie_methyltran ubiE  25.8      43  0.0011   15.0   1.8   19   61-79     25-43  (233)
204 cd06323 PBP1_ribose_binding Pe  25.6      53  0.0013   14.4   5.5   45   18-65     17-61  (268)
205 TIGR00643 recG ATP-dependent D  25.6      47  0.0012   14.7   2.0   79   93-183   334-422 (721)
206 cd02809 alpha_hydroxyacid_oxid  25.5      53  0.0014   14.4   5.4   20   71-90     31-50  (299)
207 cd01542 PBP1_TreR_like Ligand-  25.4      53  0.0014   14.4   5.5   83  130-222   134-217 (259)
208 COG0622 Predicted phosphoester  25.2      54  0.0014   14.4   4.4  139    1-208     2-143 (172)
209 pfam07355 GRDB Glycine/sarcosi  25.2      54  0.0014   14.3   5.6   64    4-67     54-119 (349)
210 PRK00910 ribB 3,4-dihydroxy-2-  24.9      54  0.0014   14.3   2.6   49  126-176    10-71  (218)
211 cd03036 ArsC_like Arsenate Red  24.8      55  0.0014   14.3   4.8   77    9-90      3-96  (111)
212 PRK12928 lipoyl synthase; Prov  24.7      55  0.0014   14.3   2.5   37   21-57     94-134 (290)
213 PRK07534 methionine synthase I  24.6      34 0.00087   15.6   1.1   22   47-68     46-67  (335)
214 cd04735 OYE_like_4_FMN Old yel  24.3      56  0.0014   14.2   5.6   12   53-64    242-253 (353)
215 PRK13114 consensus              24.2      56  0.0014   14.2   5.2   22   46-67     27-48  (266)
216 TIGR02928 TIGR02928 orc1/cdc6   24.1      56  0.0014   14.2   2.2   58    9-66     48-116 (383)
217 pfam02635 DrsE DsrE/DsrF-like   24.0      56  0.0014   14.2   3.2   75    2-88     37-119 (119)
218 cd03814 GT1_like_2 This family  23.9      57  0.0014   14.2   4.8   42   19-65     72-113 (364)
219 pfam00737 PsbH Photosystem II   23.9      26 0.00067   16.4   0.4   17   84-100     6-24  (52)
220 PRK12413 phosphomethylpyrimidi  23.9      54  0.0014   14.4   2.0   15   53-67     64-78  (253)
221 cd06906 M14_Nna1 Peptidase M14  23.6      57  0.0015   14.2   2.7   50  114-164   113-168 (278)
222 COG0415 PhrB Deoxyribodipyrimi  23.5      58  0.0015   14.1   2.7   46   19-64     79-124 (461)
223 TIGR02814 pfaD_fam PfaD family  23.5      58  0.0015   14.1   2.9   77   58-139    75-166 (449)
224 cd00381 IMPDH IMPDH: The catal  23.5      58  0.0015   14.1   5.9   15   50-64     97-111 (325)
225 pfam02590 SPOUT_MTase Predicte  23.3      58  0.0015   14.1   4.5   47    2-48      4-50  (155)
226 TIGR02884 spore_pdaA delta-lac  23.3      19 0.00049   17.3  -0.4   76   65-158    92-198 (225)
227 KOG1207 consensus               23.1      59  0.0015   14.1   3.5  196   32-253     6-231 (245)
228 TIGR02109 PQQ_syn_pqqE coenzym  23.1      46  0.0012   14.8   1.5  112   41-156    87-235 (363)
229 PRK03353 ribB 3,4-dihydroxy-2-  23.1      59  0.0015   14.1   4.2   50  125-176     8-70  (217)
230 CHL00066 psbH photosystem II p  23.0      28 0.00072   16.2   0.4   18   84-101    21-40  (73)
231 PRK02624 psbH photosystem II r  23.0      26 0.00066   16.4   0.2   38   84-140     9-48  (64)
232 TIGR00433 bioB biotin synthase  22.8      57  0.0015   14.2   1.9   35   21-62    143-179 (350)
233 pfam01293 PEPCK_ATP Phosphoeno  22.7      60  0.0015   14.0   3.7   75  128-220   183-271 (451)
234 cd06290 PBP1_LacI_like_9 Ligan  22.4      61  0.0015   14.0   7.6   51   13-66     12-62  (265)
235 cd01149 HutB Hemin binding pro  22.4      61  0.0016   14.0   3.6   39   26-70     54-93  (235)
236 PRK09206 pyruvate kinase; Prov  22.2      61  0.0016   14.0   3.8   29   47-75     15-47  (470)
237 PRK05481 lipoyl synthase; Prov  22.1      61  0.0016   14.0   2.5   11   26-36     91-101 (289)
238 PRK06096 molybdenum transport   22.1      62  0.0016   14.0   3.0   13  215-227   177-189 (284)
239 cd02940 DHPD_FMN Dihydropyrimi  22.0      62  0.0016   14.0   4.3   31   40-70     17-47  (299)
240 KOG0910 consensus               22.0      40   0.001   15.2   1.0   86  130-224    50-146 (150)
241 cd06291 PBP1_Qymf_like Ligand   22.0      62  0.0016   14.0   4.9  183   13-217    12-213 (265)
242 COG0352 ThiE Thiamine monophos  21.9      53  0.0014   14.4   1.6   19   49-67     24-42  (211)
243 KOG2550 consensus               21.7      63  0.0016   13.9   4.4   37   44-81    248-288 (503)
244 PRK13625 bis(5'-nucleosyl)-tet  21.5      62  0.0016   13.9   1.9   64    1-68      1-76  (245)
245 CHL00194 ycf39 Ycf39; Provisio  21.5      63  0.0016   13.9   3.5  133    1-153     1-144 (319)
246 COG0394 Wzb Protein-tyrosine-p  21.4      63  0.0016   13.9   6.0   79    1-87      3-82  (139)
247 PRK06603 enoyl-(acyl carrier p  21.4      61  0.0016   14.0   1.9   52   41-92     16-68  (260)
248 TIGR01873 cas_CT1978 CRISPR-as  21.3      64  0.0016   13.9   2.5   42    5-48     29-74  (91)
249 cd02950 TxlA TRX-like protein   21.2      64  0.0016   13.9   3.5   21  205-225    89-109 (142)
250 PRK07831 short chain dehydroge  21.1      64  0.0016   13.8   2.1  180   43-247    25-257 (261)
251 PRK12743 acetoin dehydrogenase  21.1      46  0.0012   14.8   1.2   95   43-138    10-109 (253)
252 CHL00033 ycf3 photosystem I as  21.1      43  0.0011   15.0   1.0   39  126-178     7-46  (165)
253 PRK07984 enoyl-(acyl carrier p  21.0      65  0.0017   13.8   2.6   53   41-93     14-67  (262)
254 KOG1151 consensus               20.9      24 0.00061   16.6  -0.3   51  189-239   602-661 (775)
255 PRK09620 hypothetical protein;  20.6      66  0.0017   13.8   3.2   84  131-224   130-218 (229)
256 pfam03314 DUF273 Protein of un  20.6      20  0.0005   17.2  -0.8   34  173-208   161-194 (222)
257 COG0502 BioB Biotin synthase a  20.6      66  0.0017   13.8   2.3   43   16-65    118-160 (335)
258 TIGR00504 pyro_pdase pyrrolido  20.5      66  0.0017   13.8   2.6   50    8-59     39-89  (220)
259 PRK10605 N-ethylmaleimide redu  20.5      66  0.0017   13.8   5.2   46   24-69     42-102 (362)
260 PRK12939 short chain dehydroge  20.3      65  0.0017   13.8   1.8  107   43-149    15-139 (250)
261 cd06286 PBP1_CcpB_like Ligand-  20.3      67  0.0017   13.7   7.3  190   11-216    10-214 (260)
262 TIGR00250 TIGR00250 conserved   20.2      67  0.0017   13.7   2.3   37  131-171    41-84  (133)
263 PRK13132 consensus              20.2      67  0.0017   13.7   5.5  136   46-221    25-190 (246)
264 cd06282 PBP1_GntR_like_2 Ligan  20.2      67  0.0017   13.7   6.6  184   12-215    11-214 (266)
265 PRK05717 oxidoreductase; Valid  20.1      68  0.0017   13.7   2.4   49   43-92     18-66  (255)
266 PRK03379 vitamin B12-transport  20.1      68  0.0017   13.7   4.3   40   26-71     73-112 (265)

No 1  
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=100.00  E-value=0  Score=809.36  Aligned_cols=266  Identities=58%  Similarity=0.977  Sum_probs=260.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      ||+||||||||+|||++|+++||.||++|++|||||||||||+|||||+|+|++|+++|+||||+|||+|||||+++|++
T Consensus         1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~   80 (266)
T COG1692           1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFID   80 (266)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHH
T ss_conf             94899822247312899998707778750673899857304577677799999999858878962663334457787763


Q ss_pred             HCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf             18938975007988875407999848992899999600005883325989999999863413689988999625762289
Q gi|254780659|r   81 RHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE  160 (274)
Q Consensus        81 ~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE  160 (274)
                      ++++||||+|||.++||+||++|. .||+|++|+|||||+||.+.+||||+++|++++++++  .+++||||||||||||
T Consensus        81 ~~~~ilRP~N~p~~~~G~G~~~f~-~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~--~~~~iiVDFHAEtTSE  157 (266)
T COG1692          81 NADRILRPANYPDGTPGKGSRIFK-INGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKL--GTDLIIVDFHAETTSE  157 (266)
T ss_pred             CCCCEECCCCCCCCCCCCEEEEEE-ECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEEECCCCCHHH
T ss_conf             344254357788899863479999-6892899998431335860017978999999974746--8964999812652155


Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf             99999760895779980697624654564036728984056013712103547467898885168865411157871999
Q gi|254780659|r  161 KQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC  240 (274)
Q Consensus       161 K~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~  240 (274)
                      |+|||||||||||||+||||||||||+||||+|||||||+||||||||||||+||++|+||++++| .||++++|+++||
T Consensus       158 K~a~g~yldGrvsavvGTHTHV~TaD~rIL~~GTayiTDvGMtG~~dSviG~~~e~~i~rFl~~~p-~rfeva~g~~~l~  236 (266)
T COG1692         158 KNAFGWYLDGRVSAVVGTHTHVPTADERILPKGTAYITDVGMTGPYDSVIGMNPEEPIKRFLTGLP-QRFEVASGPAQLN  236 (266)
T ss_pred             HHHHHEEECCEEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCEEE
T ss_conf             520106886728899854676556411405798489866744456642026783689999974798-6467558983788


Q ss_pred             EEEEEEECCCCCEEEEEEEEECCCCCCCCC
Q ss_conf             999998479986746789987683165787
Q gi|254780659|r  241 GICAEISDVTGLAEKIAPIRIGPRLSETRP  270 (274)
Q Consensus       241 gv~ieid~~tG~a~~I~ri~igg~L~e~~p  270 (274)
                      ||+||+|++||+|.+|||||+++.++++.|
T Consensus       237 GV~ieid~~Tg~a~kie~Iri~~~~~~~~~  266 (266)
T COG1692         237 GVLIEIDDRTGKAVKIERIRIGEDLEFTLP  266 (266)
T ss_pred             EEEEEECCCCCCEEEEEEEEECCCCCCCCC
T ss_conf             999996178896388887785377623379


No 2  
>TIGR00282 TIGR00282 conserved hypothetical protein TIGR00282; InterPro: IPR005235   This family of conserved hypothetical proteins has no known function..
Probab=100.00  E-value=0  Score=444.41  Aligned_cols=257  Identities=43%  Similarity=0.721  Sum_probs=248.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      +++||+||++|++||+.+..++|.++.+|++|++|+|+||+++|+|+++++++.|+..|+|++|+|||+|+++++.+++.
T Consensus         1 ~~~~~~gd~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~l~~~g~~~~~~g~~~w~~~~~~~~~~   80 (272)
T TIGR00282         1 IKVLFLGDVYGKAGRKIVKENLPKLKNKYKPDLVIANGENTTNGKGLTPKHYNNLKQSGVDYITLGNHTWFKKEDLDLLD   80 (272)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             90688621116520256776665542100220588716644456655478888887606543440652011345556541


Q ss_pred             HCCCEEEECCCCCCCC----CCCEEEEECCCCCEEEEEEEEHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             1893897500798887----5407999848992899999600005883-3259899999998634136899889996257
Q gi|254780659|r   81 RHCKFLRPANYPPNTP----GNGSGLYCAKNGSNVLVANIMGRVFMNP-LLDDPFRTADKILATCPLKEQADVIVFDFHA  155 (274)
Q Consensus        81 ~~~~ilRP~N~p~~~P----G~G~~i~~~~~g~ki~Vinl~Gr~fM~~-~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa  155 (274)
                      +.+.++||+|++...|    |+|+..+.. ++.+++++|++|+.+.-| .+++||...+++....  .++++.+++||||
T Consensus        81 ~~~~~~~p~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~--~~~~~~~~~d~~~  157 (272)
T TIGR00282        81 NQPDLLRPLNFPDGFPFFNLGKGSCFLKL-NGEKLAVTNLLGTSLNLPFALTNPFLKLKELVPEL--SKDCDLHFVDFHA  157 (272)
T ss_pred             CCHHHHCCCCCCCCCCHHHCCCCEEEEEE-CCCEEEEEEECCCEECCCCCCCCHHHHHHHHHHHH--HHCCCEEEEEECC
T ss_conf             20012024554111321122562179975-47435765411420036520024145677766655--3036536885022


Q ss_pred             CCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC-HHHCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             62289999997608957799806976246545640367289840560137-12103547467898885168865411157
Q gi|254780659|r  156 ETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIAN  234 (274)
Q Consensus       156 EaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~-~~SVIG~~~~~~i~rf~t~~p~~r~~~a~  234 (274)
                      |+|+||.+++|++||++++++||||||||+|.||+|+||+|+||+||||| ++|++|++++..+++|.++.|. +|++++
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~d~~~~~~g~~~~~d~g~~g~g~~~~~g~~~~~~~~~~~~~~~~-~~~~~~  236 (272)
T TIGR00282       158 ETTSEKNAFGWFFDGYVTAVVGTHTHVPTADLRILPKGTAYITDVGMTGPGFGSVLGANPETSLKLFCTGLPL-RFEVSE  236 (272)
T ss_pred             CCCCCHHHHEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC-EEEEEC
T ss_conf             2231001110001450123320211122322201435623554223457764431146725666666504530-255513


Q ss_pred             CCEEEEEEEEEEECCCCCEEEEEEEEE
Q ss_conf             871999999998479986746789987
Q gi|254780659|r  235 GPATLCGICAEISDVTGLAEKIAPIRI  261 (274)
Q Consensus       235 g~~~l~gv~ieid~~tG~a~~I~ri~i  261 (274)
                      +..+++|++++++.+++++.+++++++
T Consensus       237 ~~~~l~g~~~~~~~~~~~~~~~~~~~~  263 (272)
T TIGR00282       237 CGTTLNGVFFEVDLKTKKALKIERIRI  263 (272)
T ss_pred             CCCEEEEEEEEEECCCCCEEHHHHHHH
T ss_conf             660330158985045552000222222


No 3  
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=99.11  E-value=1.6e-08  Score=76.03  Aligned_cols=180  Identities=18%  Similarity=0.225  Sum_probs=123.6

Q ss_pred             EEEEEEECCCH--------HHHHHHHHHHHHHHHHC---CCCEEEECCEECCCCCCCC-----HHHHHHHHHCCCCEEEE
Q ss_conf             26999720276--------88999999808988860---9989999170047886789-----99999998379989993
Q gi|254780659|r    2 RLLFLGDIVGK--------TGRSIVYEMLPRLIRDF---QLDFVIANGENSAGGFGIT-----EKIFCEMMETGIDVITT   65 (274)
Q Consensus         2 kiLfiGDIvG~--------~Gr~~v~~~Lp~l~~~~---~~DfvIaNgENaa~G~Git-----~~~~~~l~~~GvDviT~   65 (274)
                      +||-+-|+-|+        .|.-.+...+.++|+++   +++.+.+++--.-.|-=.+     .-.++-|-.+|.|+.|.
T Consensus        36 tilhtnD~Hg~~~~~~~~~~G~a~~at~i~~~R~e~~a~~~n~llldaGD~~qGt~~s~l~~g~p~i~~mN~lgyDa~tl  115 (551)
T PRK09558         36 TVLHTNDHHGHFWRNEYGEYGLAARKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAV  115 (551)
T ss_pred             EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHCCCCHHHHHHHCCCCCEEEE
T ss_conf             99984555567767667885799999999999999852599879995885556774604228807999986189888977


Q ss_pred             CHHHHCCC--CHHHHHHHCCCEEEECCCCC---CCCC-CCEEEEECCCCCEEEEEEEEHHHCC---CC------CCCCHH
Q ss_conf             42653022--20475421893897500798---8875-4079998489928999996000058---83------325989
Q gi|254780659|r   66 GNHVWDKR--EALVFSQRHCKFLRPANYPP---NTPG-NGSGLYCAKNGSNVLVANIMGRVFM---NP------LLDDPF  130 (274)
Q Consensus        66 GNH~wd~k--ei~~~i~~~~~ilRP~N~p~---~~PG-~G~~i~~~~~g~ki~Vinl~Gr~fM---~~------~~d~PF  130 (274)
                      |||=||.-  .+..+++..+.=+=-+|.-.   +.|- +-|.|++ .+|.||+||-+.-.--.   +|      .+.+|.
T Consensus       116 GNHEFD~G~~~l~~~~~~a~fP~LsANi~~~~~g~~~~~py~I~e-~~G~kVGiIGl~t~~t~~~~~p~~~~~~~f~d~v  194 (551)
T PRK09558        116 GNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYKIFD-VQGLKIAVIGLTTEDTAKIGNPEYITDLEFRDPA  194 (551)
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEE-ECCEEEEEEECCCCCCCCCCCCCCCCCCEECCHH
T ss_conf             754455787899999852799779866567788981557769999-7996999997156563012584555895572899


Q ss_pred             HHHHHHHHHCCCCCCCCEEEEECCC---------CCHHHHHHHHHHHCC-CEEEEEECCCCC
Q ss_conf             9999998634136899889996257---------622899999976089-577998069762
Q gi|254780659|r  131 RTADKILATCPLKEQADVIVFDFHA---------ETTSEKQCFAHFVDS-RASLVVGTHTHI  182 (274)
Q Consensus       131 ~~~d~~l~~~~~~~~~~~i~VDfHa---------EaTSEK~A~g~~lDG-rVsaVvGTHTHV  182 (274)
                      +++.+.+++++..+.+|+|++=.|.         +..++..+++..++. .|.+|+|=|||-
T Consensus       195 e~~~~~v~~Lr~~~g~DiII~L~H~G~~~d~~~~~~~~~d~~lA~~~~~~gIDvIigGHsH~  256 (551)
T PRK09558        195 EEAKKVIPELKQTEKPDIIIALTHMGHYADGEHGSNAPGDVTMARALPAGSLDMIIGGHSQD  256 (551)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             99999999998538999899995566446655455673169999747756850998078775


No 4  
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=99.09  E-value=1.7e-08  Score=76.00  Aligned_cols=181  Identities=21%  Similarity=0.219  Sum_probs=110.0

Q ss_pred             EEEEEEECCCHHHHHHH--------HHHHHHHHHHC-CCCEEEECCEECCCCC----------CCCHHHHHHHHHCCCCE
Q ss_conf             26999720276889999--------99808988860-9989999170047886----------78999999998379989
Q gi|254780659|r    2 RLLFLGDIVGKTGRSIV--------YEMLPRLIRDF-QLDFVIANGENSAGGF----------GITEKIFCEMMETGIDV   62 (274)
Q Consensus         2 kiLfiGDIvG~~Gr~~v--------~~~Lp~l~~~~-~~DfvIaNgENaa~G~----------Git~~~~~~l~~~GvDv   62 (274)
                      +|.|.|||+  .||..-        ...+..++.-. +.|++|+|-|..-.+.          --.++.++.|.++|+|+
T Consensus         1 tl~f~GDi~--l~~~~~~~~~~~d~~~~~~~v~~~l~~aD~~i~NlE~~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~   78 (237)
T pfam09587         1 TLAFVGDVM--LGRGLDQIAPPYDFDYPFADVKPLLRAADLAIGNLETPITDSGEPYSGKPAFRAPPENAEALKAAGFDV   78 (237)
T ss_pred             CEEEEEEEC--CCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCE
T ss_conf             969986461--688456651048807889999999861998699811365488987899815779999999999849999


Q ss_pred             EEECH-HHHCCCC-----HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC--------CCCC
Q ss_conf             99342-6530222-----04754218938975007988875407999848992899999600005883--------3259
Q gi|254780659|r   63 ITTGN-HVWDKRE-----ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNP--------LLDD  128 (274)
Q Consensus        63 iT~GN-H~wd~ke-----i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~--------~~d~  128 (274)
                      +++.| |++|+-+     .++.+++.. |.--==......-+-..+++ .+|.||+++...-...=..        ...+
T Consensus        79 vslANNH~~D~G~~G~~~T~~~L~~~g-i~~~G~g~~~~~a~~p~~~~-~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~  156 (237)
T pfam09587        79 VSLANNHSLDYGEEGLLDTLDALDRAG-IAHAGAGRNLEEARRPAILE-VNGIRIAFLAYTYGTNGWGAGPYRPGVNPLD  156 (237)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCHHHCCCCEEEE-ECCCEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             995776433257799999999999879-96058889946627808999-7993899999875878756788887557569


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEECCC------CCHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHH
Q ss_conf             899999998634136899889996257------6228999999760-895779980697624654564
Q gi|254780659|r  129 PFRTADKILATCPLKEQADVIVFDFHA------ETTSEKQCFAHFV-DSRASLVVGTHTHIPTADAQI  189 (274)
Q Consensus       129 PF~~~d~~l~~~~~~~~~~~i~VDfHa------EaTSEK~A~g~~l-DGrVsaVvGTHTHV~TaD~rI  189 (274)
                      + ..+.+.+++.  ++++|+++|=+|.      +-+++...+++.| |--|.+|+|+|.||.-.=|++
T Consensus       157 ~-~~i~~~i~~~--k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lidaGaDlIiGhHpHv~q~iE~y  221 (237)
T pfam09587       157 E-EKIKADIRRA--KKKADIVIVSLHWGVEYQYEPTPEQRELAHALIDAGADLVIGHHPHVLQPIEVY  221 (237)
T ss_pred             H-HHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf             9-9999999987--507999999877566787699999999999999779999991899878874999


No 5  
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=99.09  E-value=1.9e-08  Score=75.64  Aligned_cols=174  Identities=22%  Similarity=0.277  Sum_probs=107.8

Q ss_pred             EEEEEEECCCHH-----HHHHHHHHHHHHHHHCCCCEEEECCEECCCCC------------CCCHHHHHHHHHCCCCEEE
Q ss_conf             269997202768-----89999998089888609989999170047886------------7899999999837998999
Q gi|254780659|r    2 RLLFLGDIVGKT-----GRSIVYEMLPRLIRDFQLDFVIANGENSAGGF------------GITEKIFCEMMETGIDVIT   64 (274)
Q Consensus         2 kiLfiGDIvG~~-----Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~------------Git~~~~~~l~~~GvDviT   64 (274)
                      ++.|.|||+-..     +-..+-+.+..+-+  +.|++|+|=|..-...            --.++.++.|.++|+|+++
T Consensus         1 tl~f~GDi~~~~~~~~~~~~~~~~~v~~~~~--~aD~~~~NlE~~i~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~~s   78 (239)
T smart00854        1 TLSFVGDVMLGRGVYKADFSPPFAGVKPLLR--AADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVS   78 (239)
T ss_pred             CEEEEEEECCCCCCCCCCCHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCEEE
T ss_conf             9699977614897455783578999999997--49999996402662899878777661202999999999982999899


Q ss_pred             ECH-HHHCCC-----CHHHHHHHCCCEEEECCCCCCCCCC--------CEEEEECCCCCEEEEEEEEHHHCC--CCCCC-
Q ss_conf             342-653022-----2047542189389750079888754--------079998489928999996000058--83325-
Q gi|254780659|r   65 TGN-HVWDKR-----EALVFSQRHCKFLRPANYPPNTPGN--------GSGLYCAKNGSNVLVANIMGRVFM--NPLLD-  127 (274)
Q Consensus        65 ~GN-H~wd~k-----ei~~~i~~~~~ilRP~N~p~~~PG~--------G~~i~~~~~g~ki~Vinl~Gr~fM--~~~~d-  127 (274)
                      +.| |++|+-     +.++.+++.       +..  ..|.        -..+++ .+|.||++++..-...-  ...-+ 
T Consensus        79 lANNH~~D~G~~Gl~~Ti~~L~~~-------gi~--~~G~g~~~~~a~~p~~~~-~~g~~va~l~~t~~~~~~~~~~~~~  148 (239)
T smart00854       79 LANNHSLDYGEEGLLDTLAALDAA-------GIA--HVGAGRNLAEARKPAIVE-VKGIKIALLAYTYGTNNGWAASKDR  148 (239)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHC-------CCC--CCCCCCCHHHCCCCEEEE-ECCEEEEEEEEECCCCCCCCCCCCC
T ss_conf             317634312089999999999986-------996--158989957737828999-8998999999870778864377899


Q ss_pred             ------CHH--HHHHHHHHHCCCCCCCCEEEEECCC------CCHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHH
Q ss_conf             ------989--9999998634136899889996257------6228999999760-895779980697624654564
Q gi|254780659|r  128 ------DPF--RTADKILATCPLKEQADVIVFDFHA------ETTSEKQCFAHFV-DSRASLVVGTHTHIPTADAQI  189 (274)
Q Consensus       128 ------~PF--~~~d~~l~~~~~~~~~~~i~VDfHa------EaTSEK~A~g~~l-DGrVsaVvGTHTHV~TaD~rI  189 (274)
                            +++  ..+.+.+++  +++++|+++|=+|.      +-+++-+.+++.| |--|.+|+|+|.||+-.=|.+
T Consensus       149 ~~~~~~~~~~~~~i~~~i~~--~k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lid~GaD~IiGhHpHv~q~~E~y  223 (239)
T smart00854      149 PGVALLPDLDREKILADIAR--ARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQPIEIY  223 (239)
T ss_pred             CCCCCCCCCCHHHHHHHHHH--HHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf             87121570179999999998--8527999999930157787799999999999999769999992899878874999


No 6  
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.70  E-value=2.6e-06  Score=61.72  Aligned_cols=194  Identities=20%  Similarity=0.226  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCC-CC----CCCHHHHHHHHHCCCCEEEECHHHHCCCC--HHHHHHHCCCE
Q ss_conf             8899999980898886099899991700478-86----78999999998379989993426530222--04754218938
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAG-GF----GITEKIFCEMMETGIDVITTGNHVWDKRE--ALVFSQRHCKF   85 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~-G~----Git~~~~~~l~~~GvDviT~GNH~wd~ke--i~~~i~~~~~i   85 (274)
                      -|.-.+...+.++|++.+-.+++=+|..-.+ ..    +-.....+-|-.+|-|+.|.|||=||.-.  +..+++....-
T Consensus        52 ~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~yDa~tiGNHEFd~g~~~l~~~~~~~~fp  131 (517)
T COG0737          52 GGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGYDAMTLGNHEFDYGLEALARLLDEAKFP  131 (517)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf             77899999999998647984999278757884501136678758999864698789513533345789999987405787


Q ss_pred             EEECCCCCC----CCC-CCEEEEECCCCCEEEEEEEEHHHCC---C------CCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             975007988----875-4079998489928999996000058---8------3325989999999863413689988999
Q gi|254780659|r   86 LRPANYPPN----TPG-NGSGLYCAKNGSNVLVANIMGRVFM---N------PLLDDPFRTADKILATCPLKEQADVIVF  151 (274)
Q Consensus        86 lRP~N~p~~----~PG-~G~~i~~~~~g~ki~Vinl~Gr~fM---~------~~~d~PF~~~d~~l~~~~~~~~~~~i~V  151 (274)
                      +=-+|+-..    .|. +-|.|++. +|.||+++=+-...-+   .      -.+.+|..++++.+++++.+ ++|.|++
T Consensus       132 ~l~aNv~~~~~~~~~~~~Py~I~~~-~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~-~vD~iI~  209 (517)
T COG0737         132 VLSANVYDKNSTGPPFFKPYAIKEV-GGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGE-GVDVIIA  209 (517)
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEE-CCEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHC-CCCEEEE
T ss_conf             7986786358777677787699961-9879999985145432344656557816667999999999998735-7989999


Q ss_pred             ECCCCCHHHHHHHHHHHCCC-------EEEEEECCCCC--CCCHHHHCCCCEEEEECCCCCCCHHHCC
Q ss_conf             62576228999999760895-------77998069762--4654564036728984056013712103
Q gi|254780659|r  152 DFHAETTSEKQCFAHFVDSR-------ASLVVGTHTHI--PTADAQILDGGTGYITDLGMCGDYNSSI  210 (274)
Q Consensus       152 DfHaEaTSEK~A~g~~lDGr-------VsaVvGTHTHV--~TaD~rILp~GTayiTDvGMtG~~~SVI  210 (274)
                      =-|.-...+.+ .+.-..+-       +.++++-|+|.  +..+.....+||. +.-.|.-|-+=+++
T Consensus       210 LsH~G~~~d~~-~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~-ivqag~~gk~vG~~  275 (517)
T COG0737         210 LSHLGIEDDLE-LASEVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTP-IVQAGEYGKYVGVL  275 (517)
T ss_pred             CCCCCCCCHHH-HHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEE-EEECCCCCCEEEEE
T ss_conf             12678663345-54226652023556675588357774446775457658889-99668777579999


No 7  
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.66  E-value=5.3e-06  Score=59.78  Aligned_cols=186  Identities=18%  Similarity=0.188  Sum_probs=123.3

Q ss_pred             CEEEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-----CHHHHHHHHHCCCCEEEECHHHHCCC-
Q ss_conf             926999720276-88999999808988860998999917004788678-----99999999837998999342653022-
Q gi|254780659|r    1 MRLLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-----TEKIFCEMMETGIDVITTGNHVWDKR-   73 (274)
Q Consensus         1 MkiLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-----t~~~~~~l~~~GvDviT~GNH~wd~k-   73 (274)
                      ++||-.-|+-|+ .|---....+.++|.+.. ..++..+--+-+|-=+     ....++-+=.+|.|+.|.|||=||.- 
T Consensus       666 l~v~htND~H~~l~~~ak~~~~IKe~Raenp-NtLlLdAGD~fqGtl~snl~kGea~~e~MN~mGyDAmtvGNHEFD~G~  744 (1260)
T PRK09419        666 LTVMHTNDTHAHLDGAARRVGKIKEVREENP-NTILLDAGDVFSGDLYFTKWKGLADLKMMNMMGYDAMTFGNHEFDKGP  744 (1260)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCEEEEHHHCCHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf             7888604542434427889999999874399-759996775677604011208989999987339778811555666777


Q ss_pred             -CHHHHHH---------------HCCCEEEECCCC-CC--CC---------------C----CCEEEEECCCCCEEEEEE
Q ss_conf             -2047542---------------189389750079-88--87---------------5----407999848992899999
Q gi|254780659|r   74 -EALVFSQ---------------RHCKFLRPANYP-PN--TP---------------G----NGSGLYCAKNGSNVLVAN  115 (274)
Q Consensus        74 -ei~~~i~---------------~~~~ilRP~N~p-~~--~P---------------G----~G~~i~~~~~g~ki~Vin  115 (274)
                       ++..|+.               ..++=+--+|.- ..  .|               .    .-|.|++ ++|.||+|+-
T Consensus       745 ~~L~~f~~g~~~~~d~~~~~~~~~a~FPvLsANv~~~~t~~l~~~~k~~~~~~a~~~~~~~i~PY~I~E-v~G~KIGIIG  823 (1260)
T PRK09419        745 DVLPDFLKGGYSAVDPLNRHQFEKPEFPFVSSNVDVSKEGKLVSWAKKPATFTAGKKKEAGIYPYILLD-VNGEKVGVFG  823 (1260)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEE-ECCEEEEEEE
T ss_conf             899998734665554322222223689889888653688751000014443333333445669838999-8999999998


Q ss_pred             EEHHHC--C-CC----CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHH
Q ss_conf             600005--8-83----3259899999998634136899889996257622899999976089577998069762465456
Q gi|254780659|r  116 IMGRVF--M-NP----LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQ  188 (274)
Q Consensus       116 l~Gr~f--M-~~----~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~r  188 (274)
                      |.-.--  + .|    .+.+|-.++.+.+++++.++.++.|++=-|.-...+ +.++.-++| |.+|+|=|+|....+..
T Consensus       824 ltT~eT~~~ssP~~~v~F~D~vetaq~~V~eLk~~~GVd~II~LsHlG~~~D-~~lA~~V~G-IDVIIgGHSHTll~~~~  901 (1260)
T PRK09419        824 LTTEDTAYTSSPGKNIEFKDAYESAEKTVKELQEKEKVNKIIALTHIGSNRD-LELAEKVKG-IDLIIGGHTHTLVDKLK  901 (1260)
T ss_pred             ECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-HHHHHHCCC-CCEEECCCCCCCCCCCC
T ss_conf             5268875566899996673799999999999986369998999967886323-999970899-98897288887778763


Q ss_pred             HC
Q ss_conf             40
Q gi|254780659|r  189 IL  190 (274)
Q Consensus       189 IL  190 (274)
                      ..
T Consensus       902 ~v  903 (1260)
T PRK09419        902 VV  903 (1260)
T ss_pred             CC
T ss_conf             14


No 8  
>pfam00149 Metallophos Calcineurin-like phosphoesterase. This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues.
Probab=98.24  E-value=3e-05  Score=54.92  Aligned_cols=170  Identities=21%  Similarity=0.210  Sum_probs=104.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHH---HHHH-CCCCEEEECHHHHCCCCHH
Q ss_conf             92699972027688999999808988860998999917004788678999999---9983-7998999342653022204
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFC---EMME-TGIDVITTGNHVWDKREAL   76 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~---~l~~-~GvDviT~GNH~wd~kei~   76 (274)
                      |||++++|+=+..........+.++..+.++|+||.-|.++..|.-.......   +..+ ..-.+++.|||=|....-.
T Consensus         1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~   80 (186)
T pfam00149         1 MRILVIGDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKAPGPVYLVRGNHDFDSGNSV   80 (186)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf             97999958968836799999999972899998899836744468641899999998863079857996178733345566


Q ss_pred             HHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf             75421893897500798887540799984899289999960000588332598999999986341368998899962576
Q gi|254780659|r   77 VFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAE  156 (274)
Q Consensus        77 ~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaE  156 (274)
                      ........ ..+.+.......         .................. .  ..................+..++-.|+-
T Consensus        81 ~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~H~p  147 (186)
T pfam00149        81 LGFYLECA-GLPYVLGNGDVS---------NGTVEIVGLSSLYGKGGG-L--VWEEFLELLDLLLLAALVDGKILLVHGP  147 (186)
T ss_pred             HHHHHHCC-CCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCH-H--HHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf             50355402-333334322122---------343221244432346877-9--9999999985181115568859998799


Q ss_pred             CHH------------HHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             228------------999999760895779980697624
Q gi|254780659|r  157 TTS------------EKQCFAHFVDSRASLVVGTHTHIP  183 (274)
Q Consensus       157 aTS------------EK~A~g~~lDGrVsaVvGTHTHV~  183 (274)
                      ..+            .....-...+..+..|+.-|+|.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GH~H~~  186 (186)
T pfam00149       148 LSPSLDSGDDIYLFGEEALEDLLKDNGVDLVLRGHTHVP  186 (186)
T ss_pred             CCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEECCEECC
T ss_conf             888655577405549999999999779989997958477


No 9  
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.54  E-value=0.0075  Score=39.34  Aligned_cols=168  Identities=18%  Similarity=0.131  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCCC----------------CCCCHHHHHHHHHCCCCEEEECHHHHCC-CC-
Q ss_conf             88999999808988860998999917004788----------------6789999999983799899934265302-22-
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGG----------------FGITEKIFCEMMETGIDVITTGNHVWDK-RE-   74 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G----------------~Git~~~~~~l~~~GvDviT~GNH~wd~-ke-   74 (274)
                      -|..-+...+.+.|+|..=-+.+=||.-.-|-                -|-+--.++.+-.+|-|+.|+|||=|+- -+ 
T Consensus        69 ~GLar~AtLI~~~R~e~~NtlLvDNGD~iQGtPl~dy~a~~~~~~~~~~~~~HPmi~AMN~LgYDa~tLGNHEFNYGLd~  148 (1260)
T PRK09419         69 FGLAQTATLIEKARKENPNTLLVDNGDLIQGNPLGEYAVKYEKDNIIFGNKTHPIILVMNALGYDAGTLGNHEFNYGLDF  148 (1260)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCHHH
T ss_conf             68999999999999648984999688512677067888751545556789978899997650887632446542157899


Q ss_pred             HHHHHHHCCCEEEECCCCCCCCC----CCEEEEEC--------CCCCEEEEEEEEHHHCC---------CCCCCCHHHHH
Q ss_conf             04754218938975007988875----40799984--------89928999996000058---------83325989999
Q gi|254780659|r   75 ALVFSQRHCKFLRPANYPPNTPG----NGSGLYCA--------KNGSNVLVANIMGRVFM---------NPLLDDPFRTA  133 (274)
Q Consensus        75 i~~~i~~~~~ilRP~N~p~~~PG----~G~~i~~~--------~~g~ki~Vinl~Gr~fM---------~~~~d~PF~~~  133 (274)
                      +-..+.+.+.=+-.+|.-.. -|    +.|.|.+.        ..+.||+|+-+.----|         +-.+++|-+++
T Consensus       149 L~~~i~~a~fPvl~ANv~~~-~g~~~f~PY~I~er~~~d~~g~~~~vKVGiiG~vpPqI~~WDk~~L~Gkv~~~Dive~A  227 (1260)
T PRK09419        149 LDGTIKGANLPIVNANLKTL-DGKRVYTPYTIKDKTLTDENGRKHGVKVGYIGFVPPQIMTWDKKNLKGQYEVKDITESA  227 (1260)
T ss_pred             HHHHHHCCCCCEEEEEEECC-CCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCEEECCHHHHH
T ss_conf             99998559998896565648-99875488799988762588872554999993279986535587755857977999999


Q ss_pred             HHHHHHCCCCCCCCEEEEECCCCCHHHH-----HHHHHHHCC---CEEEEEECCCCC
Q ss_conf             9998634136899889996257622899-----999976089---577998069762
Q gi|254780659|r  134 DKILATCPLKEQADVIVFDFHAETTSEK-----QCFAHFVDS---RASLVVGTHTHI  182 (274)
Q Consensus       134 d~~l~~~~~~~~~~~i~VDfHaEaTSEK-----~A~g~~lDG---rVsaVvGTHTHV  182 (274)
                      .+.+.+.+ .+.+|+|++=.|.=-.+|.     .-.+++|.-   -+.||+.=|+|.
T Consensus       228 ~~~Vp~mk-~~GADvVIalaHsGi~~~~~~~g~ENa~~~LA~~v~GIDAIv~GHsH~  283 (1260)
T PRK09419        228 KETIPEMK-EGGADVYIALAHSGIEKEAQSYGAENSAFDLAEKNPGIDAIVSGHQHG  283 (1260)
T ss_pred             HHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCC
T ss_conf             99999998-759998999526577888777776408999986299976798077560


No 10 
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.51  E-value=0.0023  Score=42.67  Aligned_cols=131  Identities=18%  Similarity=0.116  Sum_probs=86.6

Q ss_pred             HHHHHHHHCCCCEEEECHHHHCC--CCHHHHHHHCCCEEEECCCCC---CCC-CCCEEEEE----CCCC----CEEEEEE
Q ss_conf             99999983799899934265302--220475421893897500798---887-54079998----4899----2899999
Q gi|254780659|r   50 KIFCEMMETGIDVITTGNHVWDK--REALVFSQRHCKFLRPANYPP---NTP-GNGSGLYC----AKNG----SNVLVAN  115 (274)
Q Consensus        50 ~~~~~l~~~GvDviT~GNH~wd~--kei~~~i~~~~~ilRP~N~p~---~~P-G~G~~i~~----~~~g----~ki~Vin  115 (274)
                      -.++-+-.+|-|+.|+|||=|+-  .-+-..+.+.+.=+-.+|.-.   +.| -+.|.|.+    ..+|    .||+|+-
T Consensus        30 Pm~~aMN~lgYDa~tLGNHEFNyGld~L~~~i~~a~fPvl~ANv~~~~~g~~~f~PY~I~er~v~d~~G~~~~vKVGiiG  109 (578)
T PRK09420         30 PVYKAMNTLDYDVGNLGNHEFNYGLDFLKKALAGAKFPYVNANVIDAKTGEPLFTPYLIKEKEVKDKDGKEHTLKIGYIG  109 (578)
T ss_pred             HHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             89999872098886214555556899999999648998997642217889834476599987886179967535999996


Q ss_pred             EEHHHCC---------CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC-------HHHHHH--HHHHHCCCEEEEEE
Q ss_conf             6000058---------83325989999999863413689988999625762-------289999--99760895779980
Q gi|254780659|r  116 IMGRVFM---------NPLLDDPFRTADKILATCPLKEQADVIVFDFHAET-------TSEKQC--FAHFVDSRASLVVG  177 (274)
Q Consensus       116 l~Gr~fM---------~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa-------TSEK~A--~g~~lDGrVsaVvG  177 (274)
                      +.--.-|         +-.+++|.+++.+.+++++ .+.+|+|++=.|.=-       ..|-.+  ++ -++| +.|++.
T Consensus       110 ~~tP~I~~Wd~~~L~G~v~~~D~ve~Akk~Vp~lk-~~GaDvVIal~HsG~~~~~~~~~~EN~~~~La-~v~G-IDaIi~  186 (578)
T PRK09420        110 FVPPQIMVWDKANLEGKVTVNDIVETARKYVPEMK-EKGADIVVAIPHSGISADPYKEMAENSVYYLS-EVPG-IDAIMF  186 (578)
T ss_pred             CCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCHHHHHHH-CCCC-CCEEEE
T ss_conf             47866565564324271797378999999999998-64999999971666577888887426889986-5899-988980


Q ss_pred             CCCCCC
Q ss_conf             697624
Q gi|254780659|r  178 THTHIP  183 (274)
Q Consensus       178 THTHV~  183 (274)
                      =|+|..
T Consensus       187 GHsH~~  192 (578)
T PRK09420        187 GHSHAV  192 (578)
T ss_pred             CCCCCC
T ss_conf             886754


No 11 
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.18  E-value=0.026  Score=35.88  Aligned_cols=187  Identities=19%  Similarity=0.203  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCC--------------CCCC----CHHHHHHHHHCCCCEEEECHHHHCC-C
Q ss_conf             8899999980898886099899991700478--------------8678----9999999983799899934265302-2
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAG--------------GFGI----TEKIFCEMMETGIDVITTGNHVWDK-R   73 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~--------------G~Gi----t~~~~~~l~~~GvDviT~GNH~wd~-k   73 (274)
                      -|..-+...+.+.|++..=-+.+=||.-.-|              ..|+    +--.+..+-.+|-|+.|+|||=|+- -
T Consensus        66 ~GLar~ATLIk~aRaE~~NslLvDNGD~IQGtPlgdy~A~~~~~~~~~~~~g~~HPmi~AMN~LgYDA~tLGNHEFNYGL  145 (780)
T PRK09418         66 VGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSYTHPLYRLMNLMKYDVISLGNHEFNYGL  145 (780)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCH
T ss_conf             67999999999999648982999687301587078999763234446777777688999987539877514465543688


Q ss_pred             C-HHHHHHHCCCEEEECCCCC----------CCCCCCEEEEEC--------CCCCEEEEEEEE-------------HHHC
Q ss_conf             2-0475421893897500798----------887540799984--------899289999960-------------0005
Q gi|254780659|r   74 E-ALVFSQRHCKFLRPANYPP----------NTPGNGSGLYCA--------KNGSNVLVANIM-------------GRVF  121 (274)
Q Consensus        74 e-i~~~i~~~~~ilRP~N~p~----------~~PG~G~~i~~~--------~~g~ki~Vinl~-------------Gr~f  121 (274)
                      + +...+.+.+.=+-.+|.-.          ...-+-|.|++.        +.+.||+||-+.             |++.
T Consensus       146 d~L~k~l~~a~fPvl~ANV~k~d~~~~~~~~~~~f~PY~Ilek~v~d~~G~~~~VKIGIIG~vpPqI~~WDk~~L~GkV~  225 (780)
T PRK09418        146 DYLNKVISKTEFPVINSNVYKDDKDNNEENDQNYFKPYHVFEKEVEDESGQKQKVKIGVMGFVPPQVMNWDKANLEGKVK  225 (780)
T ss_pred             HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEE
T ss_conf             99999985599988975642056666655687354887999988754889712258999944787652224434457379


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-----HHHHHHHHCC--CEEEEEECCCCCCCCHHHHCCCCE
Q ss_conf             883325989999999863413689988999625762289-----9999976089--577998069762465456403672
Q gi|254780659|r  122 MNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE-----KQCFAHFVDS--RASLVVGTHTHIPTADAQILDGGT  194 (274)
Q Consensus       122 M~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE-----K~A~g~~lDG--rVsaVvGTHTHV~TaD~rILp~GT  194 (274)
                          ..++-+++.+.+.+++ .+.+|+|++=.|.=--++     -.-.+++|..  -+.||+.=|+|.--.+ .  -+|.
T Consensus       226 ----~~DiVEtAkk~Vp~mk-~~GADvIValaHsGi~~~~~~~g~ENa~~~La~VpGIDAIv~GHsH~~~~~-t--inGv  297 (780)
T PRK09418        226 ----AKDIVETAKKMVPKMK-AEGADVIVALAHSGVDKSGYNVGMENASYYLTEVPGVDAVLMGHSHTEVKD-V--FNGV  297 (780)
T ss_pred             ----ECCHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCC-C--CCCE
T ss_conf             ----6689999999999998-749999999434566777887651079999863998758983344500247-6--5884


Q ss_pred             EEEECCCCCCCHHHCCC
Q ss_conf             89840560137121035
Q gi|254780659|r  195 GYITDLGMCGDYNSSIG  211 (274)
Q Consensus       195 ayiTDvGMtG~~~SVIG  211 (274)
                      .    +=|-|.|.|-+|
T Consensus       298 p----vVmPG~wGshLG  310 (780)
T PRK09418        298 P----VVMPGVFGSNLG  310 (780)
T ss_pred             E----EECCCHHHCEEE
T ss_conf             7----756665666244


No 12 
>KOG4419 consensus
Probab=97.01  E-value=0.018  Score=36.86  Aligned_cols=200  Identities=16%  Similarity=0.200  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCH------HHHHHHHHCCC-CEEEECHHHHCCCCHHHHHH-------
Q ss_conf             99999980898886099899991700478867899------99999983799-89993426530222047542-------
Q gi|254780659|r   15 RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITE------KIFCEMMETGI-DVITTGNHVWDKREALVFSQ-------   80 (274)
Q Consensus        15 r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~------~~~~~l~~~Gv-DviT~GNH~wd~kei~~~i~-------   80 (274)
                      -.++...+.++-++-.+|.+.++.--..+|-|++.      .-.+.|+++== |.+|+|||-+|+-++....+       
T Consensus        71 f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~~~yD~l~lGNHEl~~~~ve~l~~~~f~~~~  150 (602)
T KOG4419          71 FAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKMMPYDILTLGNHELYQANVENLTEEYFLPAW  150 (602)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHH
T ss_conf             79999999998741699879973544468843122047825778888742852222204214444342023335556540


Q ss_pred             HCCCEEEECCCCCC----CC-CCCEEEEECCCCCEEEEEEEEHHHCCC---CCCCCHHHHH---HHHHHHCCCCCCCCEE
Q ss_conf             18938975007988----87-540799984899289999960000588---3325989999---9998634136899889
Q gi|254780659|r   81 RHCKFLRPANYPPN----TP-GNGSGLYCAKNGSNVLVANIMGRVFMN---PLLDDPFRTA---DKILATCPLKEQADVI  149 (274)
Q Consensus        81 ~~~~ilRP~N~p~~----~P-G~G~~i~~~~~g~ki~Vinl~Gr~fM~---~~~d~PF~~~---d~~l~~~~~~~~~~~i  149 (274)
                      +.+.+.-|++.-..    .| |.-+..|..+.++++.++--..-.|=.   +..+-|-+.+   ++--..++ ..+.|+|
T Consensus       151 k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG~~~~~f~~~~n~~~v~~veei~~~~~~~~m~~-~~~idli  229 (602)
T KOG4419         151 KGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVGFLCASFSGAANRTVVVPVEEITQSEWEQDMVN-TTDIDLI  229 (602)
T ss_pred             CCCEEECCEEEECCCHHHCCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCHHHHHHH-CCCCCEE
T ss_conf             464661114874581110525666358842675389988786223556678763351898752426888851-5686489


Q ss_pred             EEECCCCCHH------HHHHHHHHHCCCEEEEEECCCCCCCC---HHH--HCCCCEEEEECCC-------------CCCC
Q ss_conf             9962576228------99999976089577998069762465---456--4036728984056-------------0137
Q gi|254780659|r  150 VFDFHAETTS------EKQCFAHFVDSRASLVVGTHTHIPTA---DAQ--ILDGGTGYITDLG-------------MCGD  205 (274)
Q Consensus       150 ~VDfHaEaTS------EK~A~g~~lDGrVsaVvGTHTHV~Ta---D~r--ILp~GTayiTDvG-------------MtG~  205 (274)
                      ++=-|--.+-      |-.-..-+.++-.--|+|-|+|+---   |+.  =|+.| -|-.+||             |++.
T Consensus       230 i~lgH~~~~~~~e~~~~~~~ir~~~p~t~IqviGGHshird~a~~d~~s~~l~~G-rypetV~~~s~~~v~v~~~~a~~~  308 (602)
T KOG4419         230 IALGHSPVRDDDEWKSLHAEIRKVHPNTPIQVIGGHSHIRDFAVYDEKSVELESG-RYPETVGWLSINKVGVVQANATRK  308 (602)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEECCCCCEEEEEEEEE
T ss_conf             9965566554066666788876207998508987610545532037764113468-876345563046754033411212


Q ss_pred             HHHCCCCCHHH
Q ss_conf             12103547467
Q gi|254780659|r  206 YNSSIGLDKEE  216 (274)
Q Consensus       206 ~~SVIG~~~~~  216 (274)
                      |.|+|-.+.++
T Consensus       309 y~g~i~~e~d~  319 (602)
T KOG4419         309 YLGPITIEFDQ  319 (602)
T ss_pred             EEEEEEEEHHH
T ss_conf             55457864110


No 13 
>TIGR01530 nadN NAD nucleotidase; InterPro: IPR006420    This family describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5-nucleotidases and has NMN 5-nucleotidase activity for NMN, AMP, etc.; GO: 0008253 5'-nucleotidase activity.
Probab=96.47  E-value=0.019  Score=36.69  Aligned_cols=165  Identities=18%  Similarity=0.252  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH----------HCCCCEEEECHHHHCC--CCHHHHHH
Q ss_conf             88999999808988860998999917004788678999999998----------3799899934265302--22047542
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM----------ETGIDVITTGNHVWDK--REALVFSQ   80 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~----------~~GvDviT~GNH~wd~--kei~~~i~   80 (274)
                      -|-.||...|.+||++++=-+|.--|      =-|+-..|.-||          .+|-|.+|+|||-||.  .-+..+++
T Consensus        32 GGy~A~~~~~~~LR~~~KN~LVLHAG------DA~~GTLY~TLF~G~ADA~~MN~~~F~yFTLGNHEFD~GNEGL~~lL~  105 (550)
T TIGR01530        32 GGYAALVAKLNKLRKKYKNALVLHAG------DALIGTLYFTLFRGRADAVLMNAANFDYFTLGNHEFDAGNEGLKKLLE  105 (550)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEECC------HHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf             30678899999988860786376110------357888887631774212200047965032476233554558998644


Q ss_pred             HCCC-EEEECCCCCCCC------CCCEEEEECCCCCEEEEEEEEHH---HCC-CC----CCCCHHHHHHHHHHHCCCCCC
Q ss_conf             1893-897500798887------54079998489928999996000---058-83----325989999999863413689
Q gi|254780659|r   81 RHCK-FLRPANYPPNTP------GNGSGLYCAKNGSNVLVANIMGR---VFM-NP----LLDDPFRTADKILATCPLKEQ  145 (274)
Q Consensus        81 ~~~~-ilRP~N~p~~~P------G~G~~i~~~~~g~ki~Vinl~Gr---~fM-~~----~~d~PF~~~d~~l~~~~~~~~  145 (274)
                      --+= +| -||.-|..-      =+-|.|++. .|+||+||-|=--   |-- .|    .+-+-..++..+-.+.+ +..
T Consensus       106 ~L~~PVL-SANV~P~~~S~L~~~WKP~~I~~~-~GE~I~~IGLDTV~KTV~SSSPGKD~~F~DEI~~~~~~~~~l~-QQG  182 (550)
T TIGR01530       106 YLKVPVL-SANVVPDKASILYNKWKPYDIVEV-DGEKIAVIGLDTVKKTVESSSPGKDVKFIDEIEAVRIAAVELK-QQG  182 (550)
T ss_pred             HHCCCEE-EECCCCCCCCHHHCCCCCCCEEEE-CCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCC
T ss_conf             4157635-532577720011025785100353-7858999830343210235877886515657899999999876-378


Q ss_pred             CCEEEEECCCCCHHHHHH-HHHHHCCCEEEEEECCCCCCCCHHHH
Q ss_conf             988999625762289999-99760895779980697624654564
Q gi|254780659|r  146 ADVIVFDFHAETTSEKQC-FAHFVDSRASLVVGTHTHIPTADAQI  189 (274)
Q Consensus       146 ~~~i~VDfHaEaTSEK~A-~g~~lDGrVsaVvGTHTHV~TaD~rI  189 (274)
                      .+-||+==||  =|||+. .|.-..| +..+|---||----|+.+
T Consensus       183 ~NKIILLSHA--G~EKN~EIAQ~~~~-IDVIV~GD~HYL~G~~~L  224 (550)
T TIGR01530       183 VNKIILLSHA--GFEKNIEIAQKVSD-IDVIVSGDSHYLLGDDEL  224 (550)
T ss_pred             CCEEEEEECC--CCCCCCHHHCCCCC-EEEEEECCEEEECCCCCC
T ss_conf             4346653117--86224020014266-007985770245255331


No 14 
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.66  E-value=0.22  Score=29.84  Aligned_cols=218  Identities=18%  Similarity=0.247  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCEECCC---------CC----CCCHHHHHHHHHCCCCEEEECHHHHCCC-C-HH
Q ss_conf             68899999980898886099899991700478---------86----7899999999837998999342653022-2-04
Q gi|254780659|r   12 KTGRSIVYEMLPRLIRDFQLDFVIANGENSAG---------GF----GITEKIFCEMMETGIDVITTGNHVWDKR-E-AL   76 (274)
Q Consensus        12 ~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~---------G~----Git~~~~~~l~~~GvDviT~GNH~wd~k-e-i~   76 (274)
                      +-|..-....+.+.|+|..--+.+=||.-.-|         ..    |-.--.++.+-.+|-|+.|+|||-|+-- | +.
T Consensus       141 ~~GLaRtAtLI~~aR~E~~NslLvDNGD~iQGsPLgDY~A~~~~~~~g~~HP~~~AMN~LgYDA~tLGNHEFNYGLdfL~  220 (810)
T PRK11907        141 TLGLAKTAVLIEEAKKENPNTVLVDNGDTIQGTPLGTYKAIVDPVAEGEQHPMYAALEALGYDAGTLGNHEFNYGLDYLK  220 (810)
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHH
T ss_conf             63478999999999863687499847840167720546753067777875879999875087520245554334789999


Q ss_pred             HHHHHCCCEEEECCCCCCCCC----CCEEEEEC----CCC----CEEEEE-------------EEEHHHCCCCCCCCHHH
Q ss_conf             754218938975007988875----40799984----899----289999-------------96000058833259899
Q gi|254780659|r   77 VFSQRHCKFLRPANYPPNTPG----NGSGLYCA----KNG----SNVLVA-------------NIMGRVFMNPLLDDPFR  131 (274)
Q Consensus        77 ~~i~~~~~ilRP~N~p~~~PG----~G~~i~~~----~~g----~ki~Vi-------------nl~Gr~fM~~~~d~PF~  131 (274)
                      ..+...+.=+-.+|.-...-|    +-|.|.+.    .+|    .||++|             ||.|+|-    .++.-+
T Consensus       221 ~~l~~A~FPvV~ANV~d~~t~~p~f~PY~Iler~v~D~~G~~~~lKIGvIGfvPPQIm~WDk~~LeGkV~----~~DIVe  296 (810)
T PRK11907        221 KVIATANMPIVNANVLDPKTGDFVYKPYKIITKTFTDTTGRKVTLNIGITGIVPPQILNWDKANLEGKVI----VRDSVE  296 (810)
T ss_pred             HHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCEEECHHHCCCCEE----ECCHHH
T ss_conf             9985599988844123588898154776999988776899874378999962597421531857639769----556899


Q ss_pred             HHHHHHHHCCCCCCCCEEEEECCCCC-----HHHHHHHHHHHCC--CEEEEEECCCCC--CCCH-----HHH----CCCC
Q ss_conf             99999863413689988999625762-----2899999976089--577998069762--4654-----564----0367
Q gi|254780659|r  132 TADKILATCPLKEQADVIVFDFHAET-----TSEKQCFAHFVDS--RASLVVGTHTHI--PTAD-----AQI----LDGG  193 (274)
Q Consensus       132 ~~d~~l~~~~~~~~~~~i~VDfHaEa-----TSEK~A~g~~lDG--rVsaVvGTHTHV--~TaD-----~rI----Lp~G  193 (274)
                      ++.+.+.+.+ .+.+|+|++=-|.--     ..-..-.+++|..  -+.||+--|+|-  |..|     +.+    ..+|
T Consensus       297 tA~~~VP~Mk-a~GADvIIALaHSGi~~~~~~~~~ENa~~~LA~V~GIDAIl~GHsH~vFPs~~~~~~~~~~~gvD~~kG  375 (810)
T PRK11907        297 AIRDIVPTMR-AAGADIILVLSHSGIGDDRYEKGEENVGYQIASIKGVDAVVTGHSHAEFPSGNGTGFYEKYPGVDGING  375 (810)
T ss_pred             HHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999998-748989999236577788777420245677633898657971665412679866530014677642236


Q ss_pred             EEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE
Q ss_conf             28984056013712103547467898885168865411157871999
Q gi|254780659|r  194 TGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC  240 (274)
Q Consensus       194 TayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~  240 (274)
                      |--=.-+=|-|.|.|-+|.=     .=.|.... .+..+..+.+.+-
T Consensus       376 tinGvPaVMpG~wGsHLGvI-----DL~L~~~~-g~W~V~~~~a~~r  416 (810)
T PRK11907        376 KINGTPVTMAGKYGDHLGII-----DLKLSYTD-GKWKVTESKAKIR  416 (810)
T ss_pred             CCCCCCEECCCCCCCEEEEE-----EEEEEECC-CEEEEECCEEEEE
T ss_conf             38876405676422502148-----77889729-9789924651476


No 15 
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=93.20  E-value=0.81  Score=26.16  Aligned_cols=98  Identities=13%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             EEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf             99972027-688999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r    4 LFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR   81 (274)
Q Consensus         4 LfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~   81 (274)
                      |.+=|+.+ +.||....+.+.++.++..+-+.+        |-|| |.+.+++++++|+|-+..|..++.+++++.-+.+
T Consensus        47 l~ivDld~s~~~~~~~~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~i~~~~~  118 (253)
T PRK02083         47 LVFLDITASSEGRDTMKDVVERVAEQVFIPLTV--------GGGIRSVEDARRLLRAGADKVSINSAAVADPELITELAD  118 (253)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHH
T ss_conf             999956266457741799999999863987785--------176213898768987798789999846538535578897


Q ss_pred             -C--CCEEEECCCCCCCCCCCEEEEECCCCCE
Q ss_conf             -8--9389750079888754079998489928
Q gi|254780659|r   82 -H--CKFLRPANYPPNTPGNGSGLYCAKNGSN  110 (274)
Q Consensus        82 -~--~~ilRP~N~p~~~PG~G~~i~~~~~g~k  110 (274)
                       .  ..|+--+++-.+.-..+|.+++. ++++
T Consensus       119 ~~G~q~Iv~siD~~~~~~~~~~~v~~~-~~~~  149 (253)
T PRK02083        119 RFGSQCIVVAIDAKRDGEPGRWEVFTH-GGRK  149 (253)
T ss_pred             HCCCEEEEEEEEEEECCCCCEEEEEEC-CCCC
T ss_conf             469835999999887376871899980-7841


No 16 
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.67  E-value=0.61  Score=26.95  Aligned_cols=59  Identities=22%  Similarity=0.394  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH---HCCCEEEEEECCCCCCCCHHHHCC
Q ss_conf             3259899999998634136899889996257622899999976---089577998069762465456403
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHF---VDSRASLVVGTHTHIPTADAQILD  191 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~---lDGrVsaVvGTHTHV~TaD~rILp  191 (274)
                      ..++|...++.+.+.     .++.|  -||.||+..-..+-.+   ..-++..++.-.|.+..-. .+|+
T Consensus        69 Mv~~P~~~i~~~~~~-----g~d~I--~~H~Ea~~~~~~~i~~ik~~g~k~Glalnp~T~~~~l~-~~l~  130 (220)
T PRK05581         69 MVENPDRYVPDFAKA-----GADII--TFHVEASEHIHRLLQLIKEAGIKAGLVLNPATPLEYLE-YVLP  130 (220)
T ss_pred             EEECHHHHHHHHHHC-----CCCEE--EECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HHHH
T ss_conf             971888879999973-----99889--98167502799999999974997046766999989999-9987


No 17 
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=92.00  E-value=0.32  Score=28.75  Aligned_cols=55  Identities=11%  Similarity=0.128  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHC------------CCEEEEEECCCCCCCCH
Q ss_conf             325989999999863413689988999625762289999997608------------95779980697624654
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVD------------SRASLVVGTHTHIPTAD  186 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lD------------GrVsaVvGTHTHV~TaD  186 (274)
                      ...+|...++.+.+.     .+|.  +-||.|||..-...--++.            =++...+--+|-+..-.
T Consensus        76 MV~~P~~~i~~~~~a-----Gad~--it~H~Ea~~~~~~~i~~i~~~~~~~~~~~~~~~~GlAlnP~Tpve~l~  142 (235)
T PRK08091         76 MVADQWTVAKACVKA-----GAHC--ITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVLRGISLCPATPLDVLI  142 (235)
T ss_pred             EECCHHHHHHHHHHC-----CCCE--EEECCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf             338889999999975-----9989--997545555889999999983420222220750138979999889999


No 18 
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.01  E-value=1.5  Score=24.50  Aligned_cols=94  Identities=17%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-+ +.|+..-.+.+.++.++..+-+.+        |-|| |.+.+++++++|+|-|..|..++.+++++.-+-
T Consensus        46 ~lhivDld~a~~~~~~n~~~I~~i~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~~p~~~~~~~  117 (232)
T TIGR03572        46 ELIVLDIDASKRGREPLFELISNLAEECFMPLTV--------GGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAA  117 (232)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------EECEEEHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHH
T ss_conf             9999968764348821799999999972985899--------71330389999999769968993454521935778999


Q ss_pred             H-C--CCEEEECCCCCCCCCCCEEEEE
Q ss_conf             1-8--9389750079888754079998
Q gi|254780659|r   81 R-H--CKFLRPANYPPNTPGNGSGLYC  104 (274)
Q Consensus        81 ~-~--~~ilRP~N~p~~~PG~G~~i~~  104 (274)
                      + .  .+|+--+.+-.+..+..|.++.
T Consensus       118 ~~~G~q~ivvsiD~k~~~~~~~~~v~~  144 (232)
T TIGR03572       118 RRFGSQCVVVSIDVKKELDGSDYKVYS  144 (232)
T ss_pred             HHCCCCCEEEEEEEECCCCCCCEEEEE
T ss_conf             986994589999984167787279996


No 19 
>PRK02621 consensus
Probab=90.87  E-value=1.5  Score=24.42  Aligned_cols=95  Identities=16%  Similarity=0.251  Sum_probs=71.1

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+....+.+.++.++-.+-+.+        |-|| |.+.+++++++|+|-+..|..++.+++++.-+-
T Consensus        46 ~lhivDld~a~~~~~~~~~~I~~i~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkVii~s~a~~np~~~~~~~  117 (254)
T PRK02621         46 ELVFLDITATHEGRATLIDVVYRTAEQVFIPLTV--------GGGISSLEGIKELLRAGADKVSLNSAAVRDPDLVRQAS  117 (254)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEEEHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHH
T ss_conf             9999826676567542899999999867985899--------63353579999999749998999886764735445568


Q ss_pred             HC---CCEEEECCCCCCCCC-CCEEEEEC
Q ss_conf             18---938975007988875-40799984
Q gi|254780659|r   81 RH---CKFLRPANYPPNTPG-NGSGLYCA  105 (274)
Q Consensus        81 ~~---~~ilRP~N~p~~~PG-~G~~i~~~  105 (274)
                      +.   ..|+--+.+-.+... .||.+|..
T Consensus       118 ~~fG~q~Iv~siD~k~~~~~~~gw~~~~~  146 (254)
T PRK02621        118 DRFGSQCIVVAIDARRRKPDNPGWDVYVR  146 (254)
T ss_pred             HHCCCCCEEEEEEEECCCCCCCCEEEEEC
T ss_conf             75698433999995535347886289966


No 20 
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=90.58  E-value=0.64  Score=26.81  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH---HHHCCCEEEEEECCCCCC
Q ss_conf             32598999999986341368998899962576228999999---760895779980697624
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFA---HFVDSRASLVVGTHTHIP  183 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g---~~lDGrVsaVvGTHTHV~  183 (274)
                      ...+|...++.+.+.     .++.|  -||.||+..-..+-   ....-|+..++--.|-+-
T Consensus        66 Mv~~P~~~i~~~~~~-----g~d~i--t~H~Ea~~~~~~~i~~Ik~~g~k~GlAlnP~T~i~  120 (210)
T PRK08005         66 MVSSPQRWLPWLAAI-----RPGWI--FIHAESVQNPSEILADIRAIGAKAGLALNPATPLL  120 (210)
T ss_pred             EECCHHHHHHHHHHC-----CCCEE--EEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf             868889999999972-----99859--99356776999999999974980788837999879


No 21 
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=90.02  E-value=1.8  Score=23.95  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=73.9

Q ss_pred             CEEEEEEECC-CH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHH----HHHHHH-CCCCEEEECHHHH---
Q ss_conf             9269997202-76-889999998089888609989999170047886789999----999983-7998999342653---
Q gi|254780659|r    1 MRLLFLGDIV-GK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKI----FCEMME-TGIDVITTGNHVW---   70 (274)
Q Consensus         1 MkiLfiGDIv-G~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~----~~~l~~-~GvDviT~GNH~w---   70 (274)
                      +||+++-|+= |. .+.+.+++.+..+. +.+||+|+.-|.............    .++|.+ +|+ ...+|||=+   
T Consensus        49 lrI~~lSDlH~g~~~~~~~l~~~v~~~n-~~~PDlVv~tGD~vd~~~~~~~~~~~~~l~~L~~~~gv-yaVlGNHD~~~~  126 (270)
T PRK11340         49 FKILFLADLHYSRFVPLSLISDAIALGI-EQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPT-FACFGNHDRPVG  126 (270)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCE-EEECCCCCCCCC
T ss_conf             5899992566889889899999999987-12999999867634477721079999998740133885-997378642245


Q ss_pred             -CCCC-HHHHHHHCC-CEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             -0222-047542189-3897500798887540799984899289999960000588332598999999986341368998
Q gi|254780659|r   71 -DKRE-ALVFSQRHC-KFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQAD  147 (274)
Q Consensus        71 -d~ke-i~~~i~~~~-~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~  147 (274)
                       ++.+ +.+.+++.. ++|+=-         . ..+.. +|.+   +++.|.-       ++...-......  +.++.+
T Consensus       127 ~~~~~~i~~~l~~~Gi~vL~N~---------~-~~i~~-~~~~---~~l~Gv~-------D~~~~~~~~~~~--~~~~~p  183 (270)
T PRK11340        127 TEKNHLIGETLKSAGITVLFNQ---------A-TVIAT-PNRQ---FELVGTG-------DLWAGQCKPPPA--SEANLP  183 (270)
T ss_pred             CCCHHHHHHHHHHCCCEEEECC---------E-EEEEE-CCEE---EEEEECC-------CHHHCCCCCCCC--CCCCCC
T ss_conf             4206999999997799892088---------2-99975-9939---9999627-------646555667612--146898


Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             899962576228999999760895779980697624
Q gi|254780659|r  148 VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIP  183 (274)
Q Consensus       148 ~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~  183 (274)
                      .|+++ |.=...|.     .-+..+..++-=|||=-
T Consensus       184 ~IlL~-H~P~~~~~-----~~~~~~dL~LSGHTHGG  213 (270)
T PRK11340        184 RLVLA-HNPDSKEV-----MRDEPWDLMLCGHTHGG  213 (270)
T ss_pred             EEEEE-ECCCCHHH-----CCCCCCCEEEEECCCCC
T ss_conf             69998-18982344-----35568557997237788


No 22 
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=90.01  E-value=1  Score=25.52  Aligned_cols=54  Identities=17%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH-HHH-HH--HHHHCCCEEEEEECCCCCCCCH
Q ss_conf             2598999999986341368998899962576228-999-99--9760895779980697624654
Q gi|254780659|r  126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTS-EKQ-CF--AHFVDSRASLVVGTHTHIPTAD  186 (274)
Q Consensus       126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTS-EK~-A~--g~~lDGrVsaVvGTHTHV~TaD  186 (274)
                      ..+|...++++.+.     .++.  +-||.||++ ... .+  -.-..-|+..++--.|-+.+-+
T Consensus        66 v~~P~~~i~~~~~~-----gad~--It~H~Ea~~~~~~~~i~~Ik~~g~k~GlAlnP~Tpi~~i~  123 (227)
T PRK09722         66 VTRPQDYIAQLADA-----GADF--ITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVEAIK  123 (227)
T ss_pred             ECCHHHHHHHHHHC-----CCCE--EEECHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf             65888889999854-----9989--9956565056599999999986997223338999866887


No 23 
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=89.53  E-value=1.6  Score=24.28  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=36.9

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH---HHHHHHCCCEEEEEECCCCCCCCHHHHCC
Q ss_conf             2598999999986341368998899962576228999---99976089577998069762465456403
Q gi|254780659|r  126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQ---CFAHFVDSRASLVVGTHTHIPTADAQILD  191 (274)
Q Consensus       126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~---A~g~~lDGrVsaVvGTHTHV~TaD~rILp  191 (274)
                      .++|.+.++.+.+.     .+|.  |=||+|||..-.   ..-.-..-++..++.-.|-+..-+ .+|+
T Consensus        67 v~~P~~~i~~~~~a-----Gad~--I~~H~Ea~~~~~~~i~~Ik~~g~k~GlalnP~T~~~~l~-~~l~  127 (220)
T PRK08883         67 VKPVDRIIPDFAKA-----GASM--ITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLAHLE-YIMD  127 (220)
T ss_pred             ECCHHHHHHHHHHC-----CCCE--EEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HHHH
T ss_conf             33888889999975-----9988--998577654999999999985996688847999879999-9997


No 24 
>PRK02747 consensus
Probab=89.12  E-value=2.1  Score=23.52  Aligned_cols=99  Identities=12%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             EEEEEECCCHH-HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             69997202768-8999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGKT-GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~~-Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+.|.. |+....+.+.++.++-.+-+.+        |-|| +.+.+++++++|+|-+..|-.++.+++++.-+-
T Consensus        46 elh~vDl~~a~~~~~~~~~lI~~i~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~np~l~~~~~  117 (257)
T PRK02747         46 ELCFLDITASHENRGTMLDVVARTAEQCFMPLTV--------GGGVRTVDDIRKLLLAGADKVSINSAAVARPEFVAEAA  117 (257)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHH
T ss_conf             8999947677567552899999999866998898--------48820738878998769968983444654834777788


Q ss_pred             H-CC--CEEEECCCCCC---CCCCCEEEEECCCCCE
Q ss_conf             1-89--38975007988---8754079998489928
Q gi|254780659|r   81 R-HC--KFLRPANYPPN---TPGNGSGLYCAKNGSN  110 (274)
Q Consensus        81 ~-~~--~ilRP~N~p~~---~PG~G~~i~~~~~g~k  110 (274)
                      + ..  .|+--+++-..   .-..+|.+++. ++++
T Consensus       118 ~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~-~~~~  152 (257)
T PRK02747        118 DKFGSQCIVVAIDAKRVSPAGENDRWEIFTH-GGRK  152 (257)
T ss_pred             HHCCCEEEEEEEEEEECCCCCCCCCEEEEEC-CCCE
T ss_conf             7559657999998775157677873899988-9846


No 25 
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=88.72  E-value=2.1  Score=23.50  Aligned_cols=53  Identities=17%  Similarity=0.189  Sum_probs=33.6

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH-H--HHHCCCEEEEEECCCCCCCC
Q ss_conf             259899999998634136899889996257622899999-9--76089577998069762465
Q gi|254780659|r  126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCF-A--HFVDSRASLVVGTHTHIPTA  185 (274)
Q Consensus       126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~-g--~~lDGrVsaVvGTHTHV~Ta  185 (274)
                      .++|.+.++.+.+.     .+|.  |=||+|||..-..+ .  .-..=++..++.-.|.+..-
T Consensus        71 v~~P~~~i~~~~~a-----Gad~--i~~H~Ea~~~~~~~i~~ik~~g~k~GlalnP~T~~~~l  126 (223)
T PRK08745         71 VEPVDRIVPDFADA-----GATT--ISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDIL  126 (223)
T ss_pred             ECCHHHHHHHHHHC-----CCCE--EEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf             33989999999973-----9978--99960644299999999998398446774699987999


No 26 
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=88.69  E-value=2.2  Score=23.33  Aligned_cols=178  Identities=21%  Similarity=0.274  Sum_probs=101.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEC--CCCCCCCHHH---HHHHHHCCCCEEE-ECHHHHCCCC
Q ss_conf             92699972027688999999808988860998999917004--7886789999---9999837998999-3426530222
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENS--AGGFGITEKI---FCEMMETGIDVIT-TGNHVWDKRE   74 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENa--a~G~Git~~~---~~~l~~~GvDviT-~GNH~wd~ke   74 (274)
                      ||+||+-|+-|+-.   ..+.+-..+.+.++|++|+-|.=+  .-|.+.-.+.   .++|...++-|+. .||  -|.++
T Consensus         4 mkil~vtDlHg~~~---~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGN--cD~~~   78 (226)
T COG2129           4 MKILAVTDLHGSED---SLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGN--CDPPE   78 (226)
T ss_pred             CEEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEECCEEHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCC--CCHHH
T ss_conf             05999840333357---89999998760368889995335213238637877666788887459708997588--98378


Q ss_pred             HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEE-----
Q ss_conf             047542189389750079888754079998489928999996000058833259899999998634136899889-----
Q gi|254780659|r   75 ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVI-----  149 (274)
Q Consensus        75 i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i-----  149 (274)
                      +...+.+...-+         -|   .+.+. ++  +.++- +|-..-.| .+.|++.-+..+... ++.-.+.+     
T Consensus        79 v~~~l~~~~~~v---------~~---~v~~i-~~--~~~~G-~Ggsn~tp-~nt~~e~~E~~I~s~-l~~~v~~~~~~~~  140 (226)
T COG2129          79 VIDVLKNAGVNV---------HG---RVVEI-GG--YGFVG-FGGSNPTP-FNTPREFSEDEIYSK-LKSLVKKADNPVN  140 (226)
T ss_pred             HHHHHHHCCCCC---------CC---CEEEE-CC--CEEEE-ECCCCCCC-CCCCCCCCHHHHHHH-HHHHHHCCCCCCE
T ss_conf             889998636520---------13---16885-58--08997-55628998-888001579999998-9988751367406


Q ss_pred             EEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCH
Q ss_conf             99625762289999997608957799806976246545640367289840560137121035474
Q gi|254780659|r  150 VFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDK  214 (274)
Q Consensus       150 ~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~  214 (274)
                      ++-|||----++      +|    ...| -+||....-|=+-  .-+|--++.||--+--=|+|+
T Consensus       141 Il~~HaPP~gt~------~d----~~~g-~~hvGS~~vr~~i--eefqP~l~i~GHIHEs~G~d~  192 (226)
T COG2129         141 ILLTHAPPYGTL------LD----TPSG-YVHVGSKAVRKLI--EEFQPLLGLHGHIHESRGIDK  192 (226)
T ss_pred             EEEECCCCCCCC------CC----CCCC-CCCCCHHHHHHHH--HHHCCCEEEEEEECCCCCCCC
T ss_conf             999537998865------46----7777-6544609999999--974975689710003556333


No 27 
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.55  E-value=1.7  Score=24.11  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=7.2

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             8678999999998379989993
Q gi|254780659|r   44 GFGITEKIFCEMMETGIDVITT   65 (274)
Q Consensus        44 G~Git~~~~~~l~~~GvDviT~   65 (274)
                      |+|++++.+..|.++||+.|-.
T Consensus       195 G~Gis~e~a~~l~~~Gv~~IdV  216 (351)
T PRK05437        195 GFGISKETAKRLADAGVKAIDV  216 (351)
T ss_pred             CCCCCHHHHHHHHHCCCCEEEE
T ss_conf             5788999999999679999995


No 28 
>PRK02145 consensus
Probab=87.88  E-value=2.5  Score=23.00  Aligned_cols=93  Identities=11%  Similarity=0.191  Sum_probs=66.5

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+....+.+.++.++..+-+.+        |-|| +.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus        47 elhivDld~a~~~~~~~~~~I~~i~~~~~iPi~v--------GGGIrs~e~~~~ll~~GadkVii~s~a~~np~~v~~~~  118 (257)
T PRK02145         47 ELTFLDITATSDGRDLILPIIEAVASQVFIPLTV--------GGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAA  118 (257)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCCHHHHHH
T ss_conf             8999978887667540899999999656874896--------27730468899999819988984155665930224578


Q ss_pred             H-C--CCEEEECCCCC----CCCCCCEEEEE
Q ss_conf             1-8--93897500798----88754079998
Q gi|254780659|r   81 R-H--CKFLRPANYPP----NTPGNGSGLYC  104 (274)
Q Consensus        81 ~-~--~~ilRP~N~p~----~~PG~G~~i~~  104 (274)
                      + .  .+|+--+++-.    ..|+ .|.+++
T Consensus       119 ~~fG~q~Iv~siD~k~~~~~~~~~-~~~v~~  148 (257)
T PRK02145        119 DKYGSQCIVVAIDAKRVSADGEPP-RWEVFT  148 (257)
T ss_pred             HHCCCCCEEEEEEEEECCCCCCCC-EEEEEE
T ss_conf             766983449999987336777775-089997


No 29 
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=87.72  E-value=1.8  Score=23.96  Aligned_cols=18  Identities=22%  Similarity=0.521  Sum_probs=5.6

Q ss_pred             CCCHHHHHHHHHCCCCEE
Q ss_conf             789999999983799899
Q gi|254780659|r   46 GITEKIFCEMMETGIDVI   63 (274)
Q Consensus        46 Git~~~~~~l~~~GvDvi   63 (274)
                      |++++.+..+.++||+.|
T Consensus       189 Gis~eda~~l~~~Gv~~I  206 (326)
T cd02811         189 GISRETAKRLADAGVKAI  206 (326)
T ss_pred             CCCHHHHHHHHHCCCCEE
T ss_conf             999999999996799999


No 30 
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=87.41  E-value=2.4  Score=23.15  Aligned_cols=72  Identities=22%  Similarity=0.188  Sum_probs=48.2

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             2699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r    2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      +|..||||=|.  .+.+.+.|.++.-...-|.+|.-|.-...|-- +.+..+.+.+..+-++ +|||=.   -++++++
T Consensus        18 ~iyvIGDIHGc--~d~L~~lL~~i~~~~~~D~LI~lGDlIDRGPd-S~~vl~ll~~~~~~~v-~GNHE~---mll~~~~   89 (218)
T PRK11439         18 HIWLVGDIHGC--FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQ-SLRCLQLLREHWVRAV-RGNHEQ---MALDALA   89 (218)
T ss_pred             EEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEECCCEECCCCC-HHHHHHHHHHCCCEEE-ECCHHH---HHHHHHH
T ss_conf             69999646589--99999999963899546789985860178978-7999999982898497-614799---9998764


No 31 
>PRK03220 consensus
Probab=87.17  E-value=2.7  Score=22.75  Aligned_cols=132  Identities=14%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+....+.+.++.++-.+-+.+        |-|| +.+.++++|++|+|-|..|..++.+++.+.-+-
T Consensus        47 ~lhivDld~a~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~~~~~~  118 (257)
T PRK03220         47 ELTFLDVTASSSGRATMLDVVRRTAEQVFIPLTV--------GGGVRTVEDVDSLLRAGADKVSVNTAAIARPELLAELA  118 (257)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEECHHHHHHCCHHHHHHH
T ss_conf             8999908887567630799999998506964898--------47858799999999819750872066775947778999


Q ss_pred             H-C--CCEEEECCCCCCC-----CCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             1-8--9389750079888-----754079998489928999996000058833259899999998634136899889996
Q gi|254780659|r   81 R-H--CKFLRPANYPPNT-----PGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFD  152 (274)
Q Consensus        81 ~-~--~~ilRP~N~p~~~-----PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VD  152 (274)
                      + .  ..++--+.+-...     --.||.+++. ++++-.             --+|+..++++.+.    .-..+++-|
T Consensus       119 ~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~-g~~~~t-------------~~~~~~~i~~~~~~----g~geil~td  180 (257)
T PRK03220        119 RRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTH-GGRRGT-------------GIDAVEWAARGAEL----GVGEILLNS  180 (257)
T ss_pred             HHCCCEEEEEEEEEEECCCCCCCCCCCEEEEEC-CCEEEC-------------CCCHHHHHHHHHHC----CCCEEEEEE
T ss_conf             870986699999988625677434687499972-882602-------------87599999998626----988899998


Q ss_pred             CCCCCHHH
Q ss_conf             25762289
Q gi|254780659|r  153 FHAETTSE  160 (274)
Q Consensus       153 fHaEaTSE  160 (274)
                      ..-+-|.+
T Consensus       181 I~rDGt~~  188 (257)
T PRK03220        181 MDADGTKA  188 (257)
T ss_pred             ECCCCCCC
T ss_conf             86866023


No 32 
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=87.03  E-value=1.9  Score=23.81  Aligned_cols=55  Identities=22%  Similarity=0.406  Sum_probs=35.4

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHC---CCEEEEEECCCCCCCCH
Q ss_conf             325989999999863413689988999625762289999997608---95779980697624654
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVD---SRASLVVGTHTHIPTAD  186 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lD---GrVsaVvGTHTHV~TaD  186 (274)
                      .+++|...++.+.+.     .++.|.  ||.|+++.-..+-.+..   =++..++.-.|.+..-.
T Consensus        65 Mv~~P~~~i~~~~~~-----g~d~I~--~H~E~~~~~~~~i~~ik~~g~~~Glal~p~T~~~~l~  122 (211)
T cd00429          65 MVENPERYIEAFAKA-----GADIIT--FHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLE  122 (211)
T ss_pred             EECCHHHHHHHHHHH-----CCCEEE--ECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHH
T ss_conf             871887769999970-----998899--8643220899999999973987235754899989999


No 33 
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.76  E-value=2.2  Score=23.38  Aligned_cols=125  Identities=14%  Similarity=0.072  Sum_probs=78.4

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH-H
Q ss_conf             699972027688999999808988860998999917004788678-99999999837998999342653022204754-2
Q gi|254780659|r    3 LLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFS-Q   80 (274)
Q Consensus         3 iLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i-~   80 (274)
                      -|.+=|+-|.-|+..-.+.+.++.++..+-+.+        |-|| |.+.+++++++|+|-+..|..++.+++.+.-+ +
T Consensus        45 ~lhvvDLdaa~g~~~N~~~I~~i~~~~~~piqv--------GGGIrs~e~~~~~l~~Ga~kViigS~a~~np~~~~~~~~  116 (231)
T PRK13586         45 SIHVVDLDAAEGKGDNEEYIKRICKIGFSWIQV--------GGGIRDVEKAERLLSYDCSAIVMSTLPFTNPDTFRRIVA  116 (231)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHH
T ss_conf             899996715689984399999999745985798--------567176999999997799889976888769599999999


Q ss_pred             HC--CCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf             18--9389750079888754079998489928999996000058833259899999998634136899889996257622
Q gi|254780659|r   81 RH--CKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETT  158 (274)
Q Consensus        81 ~~--~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT  158 (274)
                      +.  .+++=-+.+..    .|+          +.+   -|..-  .. -++...++++.+.    .-..+++-|..-+-|
T Consensus       117 ~~G~~~iv~siD~~~----~~~----------v~~---~Gw~~--~~-~~~~~~i~~~~~~----g~~~ii~TdI~~DGt  172 (231)
T PRK13586        117 GIGENRVLVSVDYDD----RKY----------VLI---KGWKE--KS-MKVEDAISHVNSL----ESLGVIFTYVCNEGT  172 (231)
T ss_pred             HHCCCCEEEEEEECC----CCE----------EEE---ECCCC--CC-CCHHHHHHHHHHC----CCCEEEEEEECCHHC
T ss_conf             849966899999758----968----------998---48726--88-6699999999975----998899976451120


Q ss_pred             H
Q ss_conf             8
Q gi|254780659|r  159 S  159 (274)
Q Consensus       159 S  159 (274)
                      -
T Consensus       173 ~  173 (231)
T PRK13586        173 K  173 (231)
T ss_pred             C
T ss_conf             3


No 34 
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=86.17  E-value=2.4  Score=23.12  Aligned_cols=93  Identities=16%  Similarity=0.269  Sum_probs=66.5

Q ss_pred             EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-| +.|+..-.+.|.++.++..+-+.+        |-|| +.+.+++++++|+|-+..|..++.+++++.-+-
T Consensus        43 elhivDld~a~~g~~~n~~~i~~i~~~~~~pi~v--------GGGIrs~~~~~~~l~~GadkVvigs~~~~n~~~~~~~~  114 (243)
T cd04731          43 ELVFLDITASSEGRETMLDVVERVAEEVFIPLTV--------GGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIA  114 (243)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEE--------EEEEEEHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
T ss_conf             9999706732037700799999999867986899--------85066479999999779978998984423771435788


Q ss_pred             H-C--CCEEEECCCCCCCCCCCEEEEE
Q ss_conf             1-8--9389750079888754079998
Q gi|254780659|r   81 R-H--CKFLRPANYPPNTPGNGSGLYC  104 (274)
Q Consensus        81 ~-~--~~ilRP~N~p~~~PG~G~~i~~  104 (274)
                      + .  .+|+=.+.+-....+ .|.++.
T Consensus       115 ~~~Gsq~Iv~siD~k~~~~~-~~~v~~  140 (243)
T cd04731         115 KRFGSQCVVVSIDAKRRGDG-GYEVYT  140 (243)
T ss_pred             HHCCCCCEEEEEEEEECCCC-CEEEEE
T ss_conf             75699309999997653789-628984


No 35 
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=85.99  E-value=3.2  Score=22.34  Aligned_cols=71  Identities=18%  Similarity=0.339  Sum_probs=57.4

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+..-.+.+.++.++..+-+.+        |-|| |.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus        45 ~lhvvDLd~A~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~~l~~GadkVvigS~a~~n~~~i~~~~  116 (241)
T PRK00748         45 WLHLVDLDGAFAGRPVNLELIEAIVAAVDIPVQL--------GGGIRDLETVEAYLDAGVARVIIGTAAVKNPELVKEAC  116 (241)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCHHHHHHHH
T ss_conf             8999978542028820799999999867999998--------27707499999999769775886471033968999998


Q ss_pred             H
Q ss_conf             1
Q gi|254780659|r   81 R   81 (274)
Q Consensus        81 ~   81 (274)
                      +
T Consensus       117 ~  117 (241)
T PRK00748        117 K  117 (241)
T ss_pred             H
T ss_conf             6


No 36 
>KOG3111 consensus
Probab=85.54  E-value=1.5  Score=24.52  Aligned_cols=54  Identities=17%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHH---CCCEEEEEECCCCCCCC
Q ss_conf             32598999999986341368998899962576228999999760---89577998069762465
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFV---DSRASLVVGTHTHIPTA  185 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~l---DGrVsaVvGTHTHV~Ta  185 (274)
                      ...+|-+.++.+.+.       -..++-||.|+|-+-..+.-++   -=+|...+--.|-|.-.
T Consensus        72 MV~~Peq~v~~~a~a-------gas~~tfH~E~~q~~~~lv~~ir~~gmk~G~alkPgT~Ve~~  128 (224)
T KOG3111          72 MVENPEQWVDQMAKA-------GASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDL  128 (224)
T ss_pred             EECCHHHHHHHHHHC-------CCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf             646988876799864-------775699986432578999999997497566874899958999


No 37 
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=85.31  E-value=2.9  Score=22.60  Aligned_cols=65  Identities=23%  Similarity=0.219  Sum_probs=47.9

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCC--CCEEEECHHH
Q ss_conf             92699972027688999999808988860998999917004788678999999998379--9899934265
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETG--IDVITTGNHV   69 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~G--vDviT~GNH~   69 (274)
                      |.-.+||||=|-  .+.+++.|.++.-.-+-|.+|.=|.=...|-- +.+..+.+.+++  +-++ +|||=
T Consensus         1 m~tyvIGDIHGc--~~el~~LL~ki~~~~~~D~lvflGDlVdRGP~-S~~vl~~v~~l~~~~~~V-lGNHE   67 (275)
T PRK00166          1 MATYAIGDIQGC--YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPD-SLETLRFVKSLGDSAVVV-LGNHD   67 (275)
T ss_pred             CCCEEEEECCCC--HHHHHHHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHHHCCCCEEE-CCCHH
T ss_conf             984488775469--99999999962899778889995635689988-299999999712670798-56437


No 38 
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=84.50  E-value=2.5  Score=22.95  Aligned_cols=59  Identities=24%  Similarity=0.419  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH-HH--HHHCCCEEEEEECCCCCCCCHHHHCC
Q ss_conf             325989999999863413689988999625762289999-99--76089577998069762465456403
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQC-FA--HFVDSRASLVVGTHTHIPTADAQILD  191 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A-~g--~~lDGrVsaVvGTHTHV~TaD~rILp  191 (274)
                      ..++|.+.++.+.+.     .+|.  +=||+|++..-.. +-  ....-|+..++--.|.+-.- +.+|+
T Consensus        65 Mv~~P~~~i~~~~~~-----g~d~--i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~~~~l-~~~l~  126 (201)
T pfam00834        65 MVEEPDRIIPDFAEA-----GADI--ISFHAEASDHPHRTIQLIKEAGAKAGLVLNPATPLDAI-EYLLD  126 (201)
T ss_pred             EEECHHHHHHHHHHC-----CCCE--EEECHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCHHH-HHHHH
T ss_conf             983776639999873-----9988--99754441379999999986497268885699860288-87674


No 39 
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=84.32  E-value=3.8  Score=21.85  Aligned_cols=87  Identities=16%  Similarity=0.227  Sum_probs=65.1

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+..-.+.+.++.++-.+-+.+        |-|| +.+.+++|+++|+|-+..|..++.+++.+.-+-
T Consensus        46 elhivDld~a~~g~~~n~~~I~~I~~~~~ipi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~~p~~i~~~~  117 (253)
T PRK01033         46 ELIVLDIDASRKGREPNYELIENLASECFMPLCY--------GGGIKTVEQAKRIFSLGVEKVSISTAALEDPKLITEAA  117 (253)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHH
T ss_conf             8999947454248801699999999876998898--------68812168889998679866999987863741657899


Q ss_pred             H-C--CCEEEECCCCCCCCC
Q ss_conf             1-8--938975007988875
Q gi|254780659|r   81 R-H--CKFLRPANYPPNTPG   97 (274)
Q Consensus        81 ~-~--~~ilRP~N~p~~~PG   97 (274)
                      + .  .+|+--+.+-.+..+
T Consensus       118 ~~fG~q~IvvsiD~k~~~~~  137 (253)
T PRK01033        118 EIYGSQSVVVSIDVKKRLFG  137 (253)
T ss_pred             HHCCCCCEEEEEEEECCCCC
T ss_conf             87799769999998248778


No 40 
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=83.29  E-value=1.1  Score=25.18  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH---HCCCEEEEEECCCCCCCCHHHH
Q ss_conf             3259899999998634136899889996257622899999976---0895779980697624654564
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHF---VDSRASLVVGTHTHIPTADAQI  189 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~---lDGrVsaVvGTHTHV~TaD~rI  189 (274)
                      ...+|...++.+.+.     .++.|.  ||.|++..-..+-.+   ..=++..++--.|.+-+-..-+
T Consensus        71 Mv~~P~~~i~~~~~~-----gad~I~--~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~i~~l~~~l  131 (224)
T PTZ00170         71 MVSDPERWVDSFAKA-----GASQFT--FHIEATEDPKAVARKIRAAGMQVGVALKPKTPAEELFPLI  131 (224)
T ss_pred             EECCHHHHHHHHHHC-----CCCEEE--ECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
T ss_conf             863888879999862-----896799--8500133999999999971476455607999879999997


No 41 
>PRK09453 phosphodiesterase; Provisional
Probab=83.26  E-value=4.1  Score=21.57  Aligned_cols=96  Identities=18%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCC------CCCH-HHHHHHHHCCCCEE-EECHHHHCC
Q ss_conf             926999720276889999998089888609989999170047886------7899-99999983799899-934265302
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGF------GITE-KIFCEMMETGIDVI-TTGNHVWDK   72 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~------Git~-~~~~~l~~~GvDvi-T~GNH~wd~   72 (274)
                      |||++|-|+=|.  ..++++.+..+++ .++|.||--|.-...|-      |-+| ..++.|.+.+..++ ..|||=++-
T Consensus         1 MkI~vISDtHgn--~~ale~vl~~~~~-~~vD~iih~GDiv~~Gp~~~~~~~y~p~~v~e~l~~~~~~~~~V~GN~D~~v   77 (183)
T PRK09453          1 MKLGFASDIHGS--LPATEKALELFKQ-SGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSEV   77 (183)
T ss_pred             CEEEEEEECCCC--HHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf             989999867899--6999999999875-5998999998625557776564447869999999851886899757881777


Q ss_pred             CCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEE
Q ss_conf             2204754218938975007988875407999848992899999
Q gi|254780659|r   73 REALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVAN  115 (274)
Q Consensus        73 kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vin  115 (274)
                      .+.            -+++|. .|...+  ++. .|+|+.++.
T Consensus        78 d~~------------~~~~~~-~~~~~~--~~~-~g~ri~l~H  104 (183)
T PRK09453         78 DQM------------LLHFPI-MAPYQQ--VLL-EGKRLFLTH  104 (183)
T ss_pred             HHH------------HHCCCC-CCCCEE--EEE-CCEEEEEEC
T ss_conf             465------------335876-898269--988-998999987


No 42 
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179   This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=80.61  E-value=1.4  Score=24.65  Aligned_cols=44  Identities=16%  Similarity=0.400  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             9998089888609989999170047886789999999983799899934
Q gi|254780659|r   18 VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG   66 (274)
Q Consensus        18 v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G   66 (274)
                      +.+.|.++-+...+=.||==     =||||+++.+++|.+.||+.|=.+
T Consensus       176 ~l~~i~~~~~~~~vPVIvKE-----vG~G~S~e~a~~L~~~Gv~aiDv~  219 (349)
T TIGR02151       176 WLEKIAEICSAVSVPVIVKE-----VGFGISKEVAKLLADAGVKAIDVS  219 (349)
T ss_pred             HHHHHHHHHHHCCCCEEEEE-----CCCCCCHHHHHHHHHCCEEEEEEC
T ss_conf             89999999965289879982-----157998899999987890088707


No 43 
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=79.23  E-value=5.7  Score=20.67  Aligned_cols=81  Identities=14%  Similarity=0.196  Sum_probs=61.0

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC-HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-889999998089888609989999170047886789-99999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT-EKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git-~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+....+.+.++.++-.+-+.+        |-||. .+.+++++++|+|-+..|..++.+++++.-+-
T Consensus        47 ~lhlvDld~a~~~~~~n~~~I~~i~~~~~vpiqv--------GGGIrs~e~~~~ll~~GadkViigS~a~~np~~i~~~~  118 (252)
T PRK13597         47 ELVFLDISATHEERAILLDVVARVAERVFIPLTV--------GGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELA  118 (252)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHH
T ss_conf             9999956466668663799999998626982898--------47713089999998569877983266674937899999


Q ss_pred             H-C--CCEEEECCC
Q ss_conf             1-8--938975007
Q gi|254780659|r   81 R-H--CKFLRPANY   91 (274)
Q Consensus        81 ~-~--~~ilRP~N~   91 (274)
                      + .  .+++=-+.+
T Consensus       119 ~~fG~q~Iv~~iD~  132 (252)
T PRK13597        119 DHFGAQAVVLAIDA  132 (252)
T ss_pred             HHCCCCCEEEEEEE
T ss_conf             87499652999988


No 44 
>pfam00875 DNA_photolyase DNA photolyase. This domain binds a light harvesting cofactor.
Probab=78.18  E-value=1.6  Score=24.17  Aligned_cols=49  Identities=22%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             HHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf             9808988860998999917004788678999999998379989993426
Q gi|254780659|r   20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNH   68 (274)
Q Consensus        20 ~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH   68 (274)
                      +.|++|.++++++-|.+|-|-...+.-.-.++.+.|.+.||.+.+--+|
T Consensus        78 ~~l~~l~~~~~i~~v~~n~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~  126 (164)
T pfam00875        78 EVLPELAKELGASAVYWNRDYEPYERRRDAAVKEALREAGIEVHSFDDH  126 (164)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCE
T ss_conf             9999999967999999916789899999999999998547469997895


No 45 
>PRK04281 consensus
Probab=77.75  E-value=6.3  Score=20.39  Aligned_cols=93  Identities=11%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             EEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH-H
Q ss_conf             999720276-88999999808988860998999917004788678-99999999837998999342653022204754-2
Q gi|254780659|r    4 LFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFS-Q   80 (274)
Q Consensus         4 LfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i-~   80 (274)
                      |.+=|+-|. .|+....+.+.++.++-.+-+.+        |-|| +.+.+++++++|+|-+..|..++.+++++.-+ +
T Consensus        47 lhivDld~a~~~~~~~~~~I~~i~~~~~vpi~v--------GGGIrs~e~~~~ll~~GadkViigs~a~~np~~l~~~~~  118 (254)
T PRK04281         47 LTFLDITASSDNRDTILHIIEEVAGQVFIPLTV--------GGGVRTVADIRRLLNAGADKVSINTAAVTRPDLIDEAAG  118 (254)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEEECHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHH
T ss_conf             999968898777530899999998507962899--------777545188999997699889977767649267676787


Q ss_pred             HC--CCEEEECCCCCCCCC-CCEEEEE
Q ss_conf             18--938975007988875-4079998
Q gi|254780659|r   81 RH--CKFLRPANYPPNTPG-NGSGLYC  104 (274)
Q Consensus        81 ~~--~~ilRP~N~p~~~PG-~G~~i~~  104 (274)
                      ..  ..|+--+.+-..... .+|.++.
T Consensus       119 ~fG~q~Iv~siD~k~~~~~~~~~~i~~  145 (254)
T PRK04281        119 FFGSQAIVAAVDAKAVNPENTRWEIFT  145 (254)
T ss_pred             HCCCEEEEEEEEEEEECCCCCCEEEEE
T ss_conf             559821799998885024688459997


No 46 
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=77.21  E-value=2.8  Score=22.70  Aligned_cols=36  Identities=19%  Similarity=0.420  Sum_probs=27.4

Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHH
Q ss_conf             7899999999837998999342653022--20475421
Q gi|254780659|r   46 GITEKIFCEMMETGIDVITTGNHVWDKR--EALVFSQR   81 (274)
Q Consensus        46 Git~~~~~~l~~~GvDviT~GNH~wd~k--ei~~~i~~   81 (274)
                      |++.+.+.++.++|+|++=+|==+|.++  +..+-|+.
T Consensus       177 Gv~~~ni~~~~~AGAD~~VaGSaiF~~~s~d~~~~i~~  214 (216)
T TIGR01163       177 GVNEDNIAEVAEAGADILVAGSAIFGADSLDYKEAIRS  214 (216)
T ss_pred             CCCHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH
T ss_conf             98976799999758989998310208886687999973


No 47 
>PRK13127 consensus
Probab=76.97  E-value=6.6  Score=20.25  Aligned_cols=48  Identities=19%  Similarity=0.222  Sum_probs=18.2

Q ss_pred             HHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             0898886099899991700478867899999999837998999342653
Q gi|254780659|r   22 LPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVW   70 (274)
Q Consensus        22 Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~w   70 (274)
                      +.++|++.+.-+|+----|.---+|+ .+-++++.++|||-+-.=+--+
T Consensus        79 ~~~~r~~~~~pivlM~Y~N~i~~~G~-e~F~~~~~~~GvdGlIipDLP~  126 (262)
T PRK13127         79 VKELRVDSSVPLVLMTYYNPVYRYGV-EKFVKKAAEAGVSGLIIPDLPV  126 (262)
T ss_pred             HHHHHCCCCCCEEEEECCHHHHHCCH-HHHHHHHHHCCCCEEEECCCCH
T ss_conf             99974569988799966138876089-9999999875997699669997


No 48 
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=76.19  E-value=6.9  Score=20.11  Aligned_cols=81  Identities=14%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-+. .|+..-.+.+.++.++..+.+.+        |-|| +.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus        45 ~i~ivDLda~~~~~~~n~~~i~~i~~~~~~pi~v--------gGGIrs~e~~~~~l~~Ga~kvvigs~~~~~~~~~~~~~  116 (229)
T pfam00977        45 ELHFVDLDAAKEGRPVNLDLIEEIAEEVFIPVQV--------GGGIRSLEDAERLLSAGADKVIIGTAAVKNPELIKEAA  116 (229)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEEEHHHHHHHHHCCCCEEEECCCHHHCHHHHHHHH
T ss_conf             8999968663026810699999999866987899--------64561189999999769989995860430937899999


Q ss_pred             HC---CCEEEECCC
Q ss_conf             18---938975007
Q gi|254780659|r   81 RH---CKFLRPANY   91 (274)
Q Consensus        81 ~~---~~ilRP~N~   91 (274)
                      +.   .+++=-+.+
T Consensus       117 ~~~g~q~iv~siD~  130 (229)
T pfam00977       117 EKFGSQCIVVAIDA  130 (229)
T ss_pred             HHCCCCCEEEEEEE
T ss_conf             98098647999987


No 49 
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=74.08  E-value=7.9  Score=19.76  Aligned_cols=115  Identities=25%  Similarity=0.299  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH-HCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCC
Q ss_conf             88999999808988860998999917004788678999999998-37998999342653022204754218938975007
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM-ETGIDVITTGNHVWDKREALVFSQRHCKFLRPANY   91 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~-~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~   91 (274)
                      -+..-+.+..++.-++|++||+|+-+-|++-   -.|+-++|++ +.|+-+|--|+-.--+  ..+-++           
T Consensus        42 m~pe~~e~~~~~~l~~~~pDf~i~isPN~a~---PGP~~ARE~l~~~giP~IvI~D~p~~K--~kd~l~-----------  105 (276)
T pfam01993        42 MDPECVEEVVLDMLEEFEPDFVIYISPNPAA---PGPKKAREMLSDSGYPAVIIGDAPGLK--VKDEME-----------  105 (276)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEECCCCCC---CCCHHHHHHHHHCCCCEEEECCCCCHH--HHHHHH-----------
T ss_conf             7988899999999986189989997899889---995679999975699879983786332--589998-----------


Q ss_pred             CCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC--------------CCHHH----HHHHHHHHCCCCCCC--CEEEE
Q ss_conf             98887540799984899289999960000588332--------------59899----999998634136899--88999
Q gi|254780659|r   92 PPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL--------------DDPFR----TADKILATCPLKEQA--DVIVF  151 (274)
Q Consensus        92 p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~--------------d~PF~----~~d~~l~~~~~~~~~--~~i~V  151 (274)
                         ..|.||.++...  -.|+    --|-|++|.-              ---|+    .+|++++.++.+++.  +-|++
T Consensus       106 ---~~g~GYIivk~D--~MIG----ARREFLDP~EMa~fNaD~~kVLa~tG~~RlvQ~eiD~vi~~v~~Gk~~~LPkiv~  176 (276)
T pfam01993       106 ---EQGLGYILVKAD--PMIG----ARREFLDPTEMALFNADVIKVLAATGAFRVVQEAIDKMIEDVKAGKEPELPQIVI  176 (276)
T ss_pred             ---HCCCCEEEEECC--CCCC----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             ---659847998367--6443----1232038799987402599999863189999999999999986589777873887


Q ss_pred             E
Q ss_conf             6
Q gi|254780659|r  152 D  152 (274)
Q Consensus       152 D  152 (274)
                      +
T Consensus       177 t  177 (276)
T pfam01993       177 D  177 (276)
T ss_pred             C
T ss_conf             4


No 50 
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=73.74  E-value=8  Score=19.71  Aligned_cols=64  Identities=22%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             26999720276889999998089888609989999170047886789999999983799899934265
Q gi|254780659|r    2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHV   69 (274)
Q Consensus         2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~   69 (274)
                      ||.+||||=|.  .+.+++.|.++.-.-..|.+|.=|.-.--|-- +.+..+-|..-.+ +.-.|||=
T Consensus        16 ~iyvVGDIHGc--~~~L~~lL~~i~~~p~~D~Lv~lGDlIDRGpd-S~~Vl~ll~~~~~-~~v~GNHE   79 (218)
T PRK09968         16 HIWVVGDIHGC--YQLLQSRLHQLSFCPETDLLISVGDNIDRGPE-SLNVLRLLNQPWF-ISVKGNHE   79 (218)
T ss_pred             EEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEEECCEECCCCC-CHHHHHHHHCCCC-EEECCHHH
T ss_conf             07999647679--89999999964788456889980664257888-2999999844798-79727479


No 51 
>pfam01522 Polysacc_deac_1 Polysaccharide deacetylase. This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan.
Probab=73.69  E-value=8  Score=19.71  Aligned_cols=54  Identities=17%  Similarity=0.269  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHCCCCEE-EECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
Q ss_conf             99999980898886099899-991700478867899999999837998999342653022204
Q gi|254780659|r   15 RSIVYEMLPRLIRDFQLDFV-IANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREAL   76 (274)
Q Consensus        15 r~~v~~~Lp~l~~~~~~Dfv-IaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~   76 (274)
                      +....+.||-|++ |++-++ -+++.+.    +-.++..+++.+.|   ...|||+|++..+.
T Consensus        17 ~~~~~~~l~~L~~-~~i~aTfFv~~~~i----~~~~~~~~~l~~~G---~eig~Ht~~H~~~~   71 (123)
T pfam01522        17 PDNTPRILDVLKK-YGVPATFFVIGGNA----ETYPELVRRMVAEG---HEIGNHTYSHPDLT   71 (123)
T ss_pred             HHHHHHHHHHHHH-CCCCEEEEECCCCC----CCCHHHHHHHHHCC---CEEEECCCCCHHHH
T ss_conf             3519999999998-29986997247645----36899999999879---98742104564155


No 52 
>PRK00830 consensus
Probab=73.23  E-value=7.4  Score=19.93  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=61.2

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+.|. .|+....+.+.++.++-.+-+.+        |-|| +.+.+++++++|+|-+..|..+..+++++.-+-
T Consensus        50 elhivDld~a~~g~~~~~~~I~~i~~~~~~pi~v--------GGGIrs~e~~~~ll~~GadkVvIgS~a~~np~~v~~~~  121 (273)
T PRK00830         50 ELVFLDITASHEGRATMIDVIERTAEEVFIPLTV--------GGGIRSIEDIRQILRAGADKVSVNTAAVKNPEFIREAS  121 (273)
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCEEECCCHHHHHHCCCCEEECHHHHHHCCHHHHHHH
T ss_conf             8999953246468842799999999866995896--------08843773289999769863983798985907789999


Q ss_pred             H-C--CCEEEECCC
Q ss_conf             1-8--938975007
Q gi|254780659|r   81 R-H--CKFLRPANY   91 (274)
Q Consensus        81 ~-~--~~ilRP~N~   91 (274)
                      + .  ..|+--+.+
T Consensus       122 ~~fGsq~IvvsiD~  135 (273)
T PRK00830        122 DIFGSQCIVVAIDC  135 (273)
T ss_pred             HHCCCCEEEEEEEE
T ss_conf             87699059999984


No 53 
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=71.29  E-value=4.1  Score=21.57  Aligned_cols=55  Identities=25%  Similarity=0.408  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH---HHHHHHHHHHCCCEEEEEECCCCCCCCH
Q ss_conf             3259899999998634136899889996257622---8999999760895779980697624654
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETT---SEKQCFAHFVDSRASLVVGTHTHIPTAD  186 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT---SEK~A~g~~lDGrVsaVvGTHTHV~TaD  186 (274)
                      .+++|.+.++.+.+.     .++.|  -||+|+|   .+-...-.-+.=++..++--+|.+..-+
T Consensus        69 MV~~p~~~i~~fa~a-----gad~I--t~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~  126 (220)
T COG0036          69 MVENPDRYIEAFAKA-----GADII--TFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALE  126 (220)
T ss_pred             ECCCHHHHHHHHHHH-----CCCEE--EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf             328989999999981-----99989--99712776899999999975985779978999778999


No 54 
>PRK05211 consensus
Probab=70.79  E-value=9.3  Score=19.28  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=61.1

Q ss_pred             EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-| +.|+..-.+.+.++.++-.+-+.+        |-|| +.+.+++|+++|+|-+..|..++.+++++.-+-
T Consensus        37 elhivDld~a~~g~~~n~~~I~~i~~~~~~Pl~v--------GGGIrs~~~i~~ll~~GadkViigs~a~~np~li~~~~  108 (248)
T PRK05211         37 ELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCV--------AGGIKSVEDAREILSFGADKISINSPALADPTLITRLA  108 (248)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHH
T ss_conf             8999978677678721499999999767985896--------27801389999999879988998976761961899999


Q ss_pred             H-CC--CEEEECC
Q ss_conf             1-89--3897500
Q gi|254780659|r   81 R-HC--KFLRPAN   90 (274)
Q Consensus        81 ~-~~--~ilRP~N   90 (274)
                      + ..  .|+--++
T Consensus       109 ~~fG~q~IvvsiD  121 (248)
T PRK05211        109 DRFGVQCIVVGID  121 (248)
T ss_pred             HHCCCCEEEEEEE
T ss_conf             8579936999997


No 55 
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=70.54  E-value=9.5  Score=19.24  Aligned_cols=115  Identities=21%  Similarity=0.282  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCC
Q ss_conf             889999998089888609989999170047886789999999983-7998999342653022204754218938975007
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGIDVITTGNHVWDKREALVFSQRHCKFLRPANY   91 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~   91 (274)
                      -+-..+....+..-+++++||||.-+-|+|.   ..|+-+.|+++ +++-+|--|+--  .++..+-+++          
T Consensus        43 M~Pe~veaav~~~~e~~~pDfvi~isPNpaa---PGP~kARE~l~~s~~PaiiigDaP--g~~vkdelee----------  107 (277)
T COG1927          43 MDPECVEAAVTEMLEEFNPDFVIYISPNPAA---PGPKKAREILSDSDVPAIIIGDAP--GLKVKDELEE----------  107 (277)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCHHHHHHHHHCCCCEEEECCCC--CCHHHHHHHH----------
T ss_conf             5868888877999985189889995799899---994689998743599779966886--3136789986----------


Q ss_pred             CCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC--------------CCHH----HHHHHHHHHCCCCCCCC--EEEE
Q ss_conf             98887540799984899289999960000588332--------------5989----99999986341368998--8999
Q gi|254780659|r   92 PPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL--------------DDPF----RTADKILATCPLKEQAD--VIVF  151 (274)
Q Consensus        92 p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~--------------d~PF----~~~d~~l~~~~~~~~~~--~i~V  151 (274)
                          .|.||.++.. + -.|+    .-|-|++|.-              --.|    .++|++++..+.+++.+  -|++
T Consensus       108 ----qGlGYIivk~-D-pmiG----ArREFLDPvEMA~fNaDv~kVLa~tGa~R~vQeaiD~~ie~vk~gk~~eLP~ivi  177 (277)
T COG1927         108 ----QGLGYIIVKA-D-PMIG----ARREFLDPVEMASFNADVMKVLAATGAFRLVQEAIDKVIEDVKEGKEPELPKIVI  177 (277)
T ss_pred             ----CCCEEEEECC-C-CCCC----HHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             ----5870799627-7-5443----2343048898875006899999840079999999999999985578767872675


Q ss_pred             E
Q ss_conf             6
Q gi|254780659|r  152 D  152 (274)
Q Consensus       152 D  152 (274)
                      |
T Consensus       178 ~  178 (277)
T COG1927         178 D  178 (277)
T ss_pred             C
T ss_conf             4


No 56 
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=69.57  E-value=5.6  Score=20.73  Aligned_cols=53  Identities=21%  Similarity=0.212  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHCCCCEEEECHH----HHCCCCHHHHHHH---CCCEEEECCCCCCCCCCCE
Q ss_conf             78999999998379989993426----5302220475421---8938975007988875407
Q gi|254780659|r   46 GITEKIFCEMMETGIDVITTGNH----VWDKREALVFSQR---HCKFLRPANYPPNTPGNGS  100 (274)
Q Consensus        46 Git~~~~~~l~~~GvDviT~GNH----~wd~kei~~~i~~---~~~ilRP~N~p~~~PG~G~  100 (274)
                      =++.+..+.+.++|.|.|--|--    +.|  +.+..+.+   -|-+|-|-|-..-+|+.-+
T Consensus        19 ~~~~~~~~~~~~sgtDaI~VGGS~~~~~~d--~~v~~ik~~~~lPviLfPg~~~~vs~~aDa   78 (231)
T pfam01884        19 TNPEEIIEIVAESGTDAIMIGGSTGGVTLD--NVVRLIKKVYGLPIILFPGNPSGVSRYADA   78 (231)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCCCCHH--HHHHHHHHHCCCCEEEECCCHHHCCCCCCE
T ss_conf             996999999997499999988988885689--999999985399989956986765867784


No 57 
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=69.07  E-value=10  Score=19.04  Aligned_cols=41  Identities=15%  Similarity=0.276  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             999998089888609989999170047886789999999983799899
Q gi|254780659|r   16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI   63 (274)
Q Consensus        16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi   63 (274)
                      ..+.+.+.++|+++.-..+||       |.=-|++.+++|.++|+|+|
T Consensus       136 ~~~~~~i~~ik~~~~~~~iia-------GNvaT~e~~~~L~~~GaD~v  176 (347)
T PRK05096        136 EHFVQFVAKAREAWPDKTICA-------GNVVTGEMVEELILSGADIV  176 (347)
T ss_pred             HHHHHHHHHHHHHCCCCEEEC-------CCHHHHHHHHHHHHCCCCEE
T ss_conf             889999999998789980881-------43123999999997378899


No 58 
>PRK01659 consensus
Probab=68.95  E-value=10  Score=19.03  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=59.3

Q ss_pred             EEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf             999720276-88999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r    4 LFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR   81 (274)
Q Consensus         4 LfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~   81 (274)
                      |.+=|+-|. .|+....+.+.++.++..+-+.+        |-|| +.+.+++++++|+|-+..|..++.+++++.-+-+
T Consensus        47 ihivDld~a~~g~~~n~~~I~~i~~~~~ipi~v--------GGGIrs~e~~~~~l~~GadkViigs~a~~n~~~i~~~~~  118 (252)
T PRK01659         47 LVFLDITATHEGRKTMVDVVEKVAAKVFIPLTV--------GGGISSVKDMKRLLRAGADKVSINSAAVLRPELITEGAD  118 (252)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE--------ECCEECHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHH
T ss_conf             999946766568864899999999756974799--------633200688889874488559831777529153214676


Q ss_pred             -C--CCEEEECCC
Q ss_conf             -8--938975007
Q gi|254780659|r   82 -H--CKFLRPANY   91 (274)
Q Consensus        82 -~--~~ilRP~N~   91 (274)
                       .  .+|+--+.+
T Consensus       119 ~~G~q~IvvsiD~  131 (252)
T PRK01659        119 HFGSQCIVVAIDA  131 (252)
T ss_pred             HCCCEEEEEEEEE
T ss_conf             4686326999998


No 59 
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=68.77  E-value=10  Score=19.00  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCH---HHHHHHHHCCCC---EEEECHHH
Q ss_conf             899999980898886099899991700478867899---999999837998---99934265
Q gi|254780659|r   14 GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITE---KIFCEMMETGID---VITTGNHV   69 (274)
Q Consensus        14 Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~---~~~~~l~~~GvD---viT~GNH~   69 (274)
                      =++.+.+.|.++.++|+++-+|.||.+-....+..+   .-..+|+++=-+   .+.-|||-
T Consensus        47 ~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~evi~i~GNHD  108 (235)
T COG1407          47 QTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDEREVIIIRGNHD  108 (235)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             58999999999998609877999075344367544232899999999741386899956677


No 60 
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.56  E-value=10  Score=18.98  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=16.0

Q ss_pred             CCCCHHHHHHHHHCCCCEEEECH
Q ss_conf             67899999999837998999342
Q gi|254780659|r   45 FGITEKIFCEMMETGIDVITTGN   67 (274)
Q Consensus        45 ~Git~~~~~~l~~~GvDviT~GN   67 (274)
                      .--|.+..+.|-+.|+|+|-.|=
T Consensus        28 ~e~s~~~~~~l~~~GaDiiElGi   50 (263)
T CHL00200         28 IVITKKALKILDKKGADIIELGI   50 (263)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECC
T ss_conf             78999999999976999999789


No 61 
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=68.17  E-value=11  Score=18.93  Aligned_cols=112  Identities=22%  Similarity=0.338  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCC
Q ss_conf             89999998089888609989999170047886789999999983-79989993426530222047542189389750079
Q gi|254780659|r   14 GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP   92 (274)
Q Consensus        14 Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p   92 (274)
                      +..-+.+.++++ ++|++||+|+-+-|++-   -.|+-++|+++ +|+-+|--|+-.--+++  +-++            
T Consensus        44 ~pe~~~~v~~~~-~~~~pDf~i~isPN~a~---PGP~~ARE~l~~~~iP~IvI~D~p~~k~k--d~l~------------  105 (276)
T PRK00994         44 GPEEVERVVKKM-KEWKPDFIIVISPNPAA---PGPTKAREILSAAGIPCIVIGDAPGKKKK--DAME------------  105 (276)
T ss_pred             CHHHHHHHHHHH-HHHCCCEEEEECCCCCC---CCCHHHHHHHHHCCCCEEEECCCCCHHHH--HHHH------------
T ss_conf             978999999998-84089989997899889---99567999997569988997488533148--8998------------


Q ss_pred             CCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC--------------CCHHH----HHHHHHHHCCCCCCC--CEEEE
Q ss_conf             8887540799984899289999960000588332--------------59899----999998634136899--88999
Q gi|254780659|r   93 PNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL--------------DDPFR----TADKILATCPLKEQA--DVIVF  151 (274)
Q Consensus        93 ~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~--------------d~PF~----~~d~~l~~~~~~~~~--~~i~V  151 (274)
                        ..|.||.++...  -.|+    --|-|++|.-              ---|+    .+|++++.++.+++.  +-|++
T Consensus       106 --~~g~GYIivk~D--~MIG----ARREFLDP~EMa~fNaD~~kVLa~tG~~RlvQ~elD~vi~~v~~Gke~~LPkiv~  176 (276)
T PRK00994        106 --EQGFGYIIVKAD--PMIG----ARREFLDPVEMASFNADVIKVLAGTGAFRLVQEALDKVIDQVKAGKEIELPKIVI  176 (276)
T ss_pred             --HCCCCEEEEECC--CCCC----HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             --649847998367--5443----1232038799987402699999852089999999999999986689877873787


No 62 
>PRK13129 consensus
Probab=64.77  E-value=12  Score=18.50  Aligned_cols=47  Identities=19%  Similarity=0.257  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCEECCCC---CCCCHHHHHHHHHCCCCEEEECH
Q ss_conf             9999808988860998999917004788---67899999999837998999342
Q gi|254780659|r   17 IVYEMLPRLIRDFQLDFVIANGENSAGG---FGITEKIFCEMMETGIDVITTGN   67 (274)
Q Consensus        17 ~v~~~Lp~l~~~~~~DfvIaNgENaa~G---~Git~~~~~~l~~~GvDviT~GN   67 (274)
                      -+++...++|++-+.-|+-    -.+.|   .-.|.+..+.|-+.|+|+|-.|=
T Consensus         5 ri~~~F~~~k~~~~~ali~----yitaG~P~~e~s~~~~~~l~~~GaDiiEiGi   54 (267)
T PRK13129          5 AISECFEQLKKEGRCALMP----FLMAGDPDLETTAEALLILQENGADLIELGI   54 (267)
T ss_pred             HHHHHHHHHHHCCCCEEEE----EEECCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             9999999999769955898----8707189989999999999977999999799


No 63 
>PRK06256 biotin synthase; Validated
Probab=64.58  E-value=12  Score=18.60  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             999998089888609989999170047886789999999983799899
Q gi|254780659|r   16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI   63 (274)
Q Consensus        16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi   63 (274)
                      +.+.+.+..+|+++.+...      ++-|. ++++.+++|+++|+|-+
T Consensus       125 e~v~~~i~~Ik~~~~l~i~------~slG~-l~~e~~~~LkeAGvd~y  165 (325)
T PRK06256        125 DQVIEAVKAIKEETDLEIC------ACLGL-LTEEQAERLKEAGVDRY  165 (325)
T ss_pred             HHHHHHHHHHHHCCCEEEE------EECCC-CCHHHHHHHHHCCCCEE
T ss_conf             9999999998622893688------73488-99999999998699888


No 64 
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=63.40  E-value=5.5  Score=20.75  Aligned_cols=22  Identities=9%  Similarity=0.101  Sum_probs=7.9

Q ss_pred             HHHCC-CCEEEECHHHHCCCCHH
Q ss_conf             98379-98999342653022204
Q gi|254780659|r   55 MMETG-IDVITTGNHVWDKREAL   76 (274)
Q Consensus        55 l~~~G-vDviT~GNH~wd~kei~   76 (274)
                      .++.| |.++-+-....|..++.
T Consensus        35 aL~~g~Va~vqlR~k~~d~~~~~   57 (221)
T PRK06512         35 ALSGGDVASVILPDYGLDEATFQ   57 (221)
T ss_pred             HHCCCCEEEEEEECCCCCHHHHH
T ss_conf             98469855999757999999999


No 65 
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=63.34  E-value=13  Score=18.33  Aligned_cols=40  Identities=25%  Similarity=0.376  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             998089888609989999170047886789999999983799899
Q gi|254780659|r   19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI   63 (274)
Q Consensus        19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi   63 (274)
                      ...+.++.+++++|.|.++.     ..+++......+...++-++
T Consensus        85 ~~~~~~~~~~~~pDivh~h~-----~~~~~~~~~~~~~~~~~p~v  124 (359)
T cd03823          85 VAEFARLLEDFRPDVVHFHH-----LQGLGVSILRAARDRGIPIV  124 (359)
T ss_pred             HHHHHHHHHHCCCCEEEECC-----CHHHHHHHHHHHHHCCCCEE
T ss_conf             99999999874999999888-----31767999999998499899


No 66 
>PHA02239 putative protein phosphatase
Probab=62.80  E-value=13  Score=18.27  Aligned_cols=77  Identities=14%  Similarity=0.241  Sum_probs=46.5

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CEEEECCEECCCCCCCCHHHHHHHHH---CCCCEE-EECHHHHCCCCH
Q ss_conf             9269997202768899999980898886099-89999170047886789999999983---799899-934265302220
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQL-DFVIANGENSAGGFGITEKIFCEMME---TGIDVI-TTGNHVWDKREA   75 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~-DfvIaNgENaa~G~Git~~~~~~l~~---~GvDvi-T~GNH~wd~kei   75 (274)
                      |||..||||=|+  .+.+.+.|.++..+.++ |.+|-=|.-.--|-- ++...+.|++   .+-+++ -.|||=   .-+
T Consensus         1 m~IYaigDIHG~--~d~l~~ll~~i~~~~~~~~~lv~lGDyiDRGp~-S~~vi~~l~~l~~~~~~~~~L~GNHE---~ml   74 (235)
T PHA02239          1 MAIYVVPDIHGE--YQKLLTIMDKINNERKPEETIVFLGDYVDRGKR-SKDVVNYIFDLMSNDDNVVTLLGNHD---DEF   74 (235)
T ss_pred             CCEEEEEECCCC--HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCHH---HHH
T ss_conf             965898624789--999999999987437977669995331068956-29999999987536997499107289---999


Q ss_pred             HHHHHHCC
Q ss_conf             47542189
Q gi|254780659|r   76 LVFSQRHC   83 (274)
Q Consensus        76 ~~~i~~~~   83 (274)
                      +.++++.+
T Consensus        75 L~~L~~~~   82 (235)
T PHA02239         75 YNIMENVD   82 (235)
T ss_pred             HHHHHCCC
T ss_conf             99884832


No 67 
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393   Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , .   Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=61.33  E-value=7.7  Score=19.84  Aligned_cols=44  Identities=34%  Similarity=0.479  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf             999980898886099899991700478867899999999837998999342
Q gi|254780659|r   17 IVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN   67 (274)
Q Consensus        17 ~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN   67 (274)
                      -+++.+..|+.+.. .+++   | |+ | |||.+...++-..|||+|.+|=
T Consensus       219 ~~~~av~~~~~~~p-~~~~---E-aS-G-Gitl~n~~~ya~~gVD~IS~G~  262 (276)
T TIGR00078       219 EIKEAVELLKGRNP-NVLV---E-AS-G-GITLDNIEEYAETGVDVISSGA  262 (276)
T ss_pred             HHHHHHHHHHHCCC-EEEE---E-EE-C-CCCHHHHHHHHHCCCCEEECCC
T ss_conf             99999999970299-0899---9-83-6-9987899998408975883274


No 68 
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=60.37  E-value=15  Score=17.99  Aligned_cols=133  Identities=14%  Similarity=0.166  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHCCCCEEEECHHHHCCCCHHHH-HHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCC
Q ss_conf             89999999983799899934265302220475-42189389750079888754079998489928999996000058833
Q gi|254780659|r   47 ITEKIFCEMMETGIDVITTGNHVWDKREALVF-SQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPL  125 (274)
Q Consensus        47 it~~~~~~l~~~GvDviT~GNH~wd~kei~~~-i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~  125 (274)
                      |....+..|...|-.+...|-..|....-... ++-.....  -|        +.  ......--+.|            
T Consensus        14 iG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~--~~--------~~--~~~~~~aDlVi------------   69 (279)
T COG0287          14 MGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELT--VA--------GL--AEAAAEADLVI------------   69 (279)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHC--CC--------HH--HHHCCCCCEEE------------
T ss_conf             77999999997698479972477467787766358530100--11--------55--54135699899------------


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC-CHHHHCCCCEEEEECCCCCC
Q ss_conf             25989999999863413689988999625762289999997608957799806976246-54564036728984056013
Q gi|254780659|r  126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPT-ADAQILDGGTGYITDLGMCG  204 (274)
Q Consensus       126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~T-aD~rILp~GTayiTDvGMtG  204 (274)
                      +--|.....++++++.-.-..+.++.|+-..-++...||--++.+.+ .++|+|-=--| ++.-.+.+..-.+|+...+.
T Consensus        70 vavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~  148 (279)
T COG0287          70 VAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE  148 (279)
T ss_pred             EECCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-EEEECCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf             95778899999998630379998897364201789999997466777-07821899987431123379679994799987


No 69 
>cd04732 HisA HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=59.67  E-value=15  Score=17.92  Aligned_cols=81  Identities=15%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             EEEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             699972027-688999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-+ ..|+..-...+.++.++..+-+.+        |-|| +.+.+++++++|+|-+..|.-++.+.+.+.-+-
T Consensus        45 ~l~i~DLdaa~~~~~~n~~~I~~I~~~~~~pi~v--------GGGIrs~~~~~~l~~~Ga~kvvi~s~~~~~~~~~~~~~  116 (234)
T cd04732          45 WLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQV--------GGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELL  116 (234)
T ss_pred             EEEEEECCCHHHCCCCHHHHHHHHHHHCCCCEEE--------CCCCCCHHHHHHHHHCCCCEEEECCCHHHCHHHHHHHH
T ss_conf             8999967530308911599999999767956897--------37717599999998648871897140110827899999


Q ss_pred             H-C--CCEEEECCC
Q ss_conf             1-8--938975007
Q gi|254780659|r   81 R-H--CKFLRPANY   91 (274)
Q Consensus        81 ~-~--~~ilRP~N~   91 (274)
                      + .  .+++=-+.+
T Consensus       117 ~~~G~q~iv~slD~  130 (234)
T cd04732         117 KEYGGERIVVGLDA  130 (234)
T ss_pred             HHCCCCCEEEEEEE
T ss_conf             98297646999997


No 70 
>TIGR00040 yfcE phosphodiesterase, MJ0936 family; InterPro: IPR000979   Members of this largely uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterised archaeal putative phosphoesterases. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown  to act on model phosphodiesterase substrates; a divalent cation was required. The following uncharacterised proteins are members of the fsmily: Escherichia coli hypothetical protein yfcE; Bacillus subtilis hypothetical protein ysnB; Mycoplasma genitalium and Mycoplasma pneumoniae hypothetical protein MG207; and M. jannaschii hypothetical proteins MJ0623 and MJ0936. .
Probab=59.04  E-value=16  Score=17.85  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=51.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCC-CEEEECHH
Q ss_conf             926999720276889999998089888609989999170047886789999999983799-89993426
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI-DVITTGNH   68 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~Gv-DviT~GNH   68 (274)
                      ||||++.|.=+.  -+|++....-+.++.++|+||-=|--.-+  --++++++++-+... =.+.-||+
T Consensus         1 m~il~~SDtH~~--~~A~e~~~~~~~~~~~~D~viH~GD~~N~--~~s~~~l~~~~~~~~~~~aV~GN~   65 (170)
T TIGR00040         1 MLILVISDTHIP--LRATELPVEAFDKESNVDLVIHAGDLTNS--YKSPFVLKEFEDLAAKVIAVRGNN   65 (170)
T ss_pred             CEEEEEEECCCC--CCCCHHHHHHHHHHCCCCEEEEECCCCCC--CCCHHHHHHHHHCCCCEEEEECCC
T ss_conf             958999620897--53315799999875188799992143235--578789998863138589996789


No 71 
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=58.19  E-value=16  Score=17.76  Aligned_cols=132  Identities=23%  Similarity=0.294  Sum_probs=74.5

Q ss_pred             CEEEEEEEC------CCHHHHHH--------------HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHH-----
Q ss_conf             926999720------27688999--------------99980898886099899991700478867899999999-----
Q gi|254780659|r    1 MRLLFLGDI------VGKTGRSI--------------VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEM-----   55 (274)
Q Consensus         1 MkiLfiGDI------vG~~Gr~~--------------v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l-----   55 (274)
                      |+|.|.=||      +||.|-+-              --+....||+++ .+||-+--=|+--|.|.+-....++     
T Consensus         1 m~vi~viDik~g~vV~gKsg~re~Y~Pis~~~~~s~dP~eia~~lr~rg-ar~vYiADLdaI~g~g~n~d~i~~l~~~~~   79 (229)
T COG1411           1 MKVIFVIDIKDGKVVVGKSGEREEYRPISSRYCLSDDPLEIAEALRERG-ARFVYIADLDAILGGGDNADTIRELSSLEK   79 (229)
T ss_pred             CCEEEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCC-CCEEEEEEHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9528999804683786468874444673103359998699999976544-746886103788668974899999876543


Q ss_pred             --HHCCCCEEEECHHHHCC-------CCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC
Q ss_conf             --83799899934265302-------220475421893897500798887540799984899289999960000588332
Q gi|254780659|r   56 --METGIDVITTGNHVWDK-------REALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL  126 (274)
Q Consensus        56 --~~~GvDviT~GNH~wd~-------kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~  126 (274)
                        .++|+-.+-+=.|.-..       .|.++.++...            -|+-+.....+++      +|     .++.+
T Consensus        80 ~ivD~Gv~dL~s~~~~l~~~~~~vv~TEt~e~~e~~e------------~~r~vvslD~k~~------~L-----l~~~~  136 (229)
T COG1411          80 VIVDVGVRDLESHAHRLIPAETAVVGTETLEDTEEDE------------EGRIVVSLDVKGG------EL-----LGPWL  136 (229)
T ss_pred             HEEECCCCCCCCHHHHCCCCCCEEECCCHHHHHHHHH------------CCCEEEEEECCCC------EE-----CCCCC
T ss_conf             5001133336478886077764353112033556633------------0666999964788------42-----37771


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf             5989999999863413689988999625762289
Q gi|254780659|r  127 DDPFRTADKILATCPLKEQADVIVFDFHAETTSE  160 (274)
Q Consensus       127 d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE  160 (274)
                      +++|.++..+...    .+.+.|++|.||=-|++
T Consensus       137 ed~le~Vk~l~~~----~~~~lIvLDi~aVGt~~  166 (229)
T COG1411         137 EDFLETVKDLNYR----RDPGLIVLDIGAVGTKS  166 (229)
T ss_pred             HHHHHHHHHHHCC----CCCCEEEEECCCCCCCC
T ss_conf             0489999987525----78884999755433466


No 72 
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=58.00  E-value=16  Score=17.74  Aligned_cols=86  Identities=17%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             CHHHHHHHHH-----------HHHHHHHHCCCCEEEECCEEC-CC------------CCCCCHHHH---------HHHH-
Q ss_conf             7688999999-----------808988860998999917004-78------------867899999---------9998-
Q gi|254780659|r   11 GKTGRSIVYE-----------MLPRLIRDFQLDFVIANGENS-AG------------GFGITEKIF---------CEMM-   56 (274)
Q Consensus        11 G~~Gr~~v~~-----------~Lp~l~~~~~~DfvIaNgENa-a~------------G~Git~~~~---------~~l~-   56 (274)
                      |.+|..-+.+           .|-.+-+++++|+||+--|.- +.            =||.|++.|         ++|+ 
T Consensus        33 GN~g~~~~a~~~~~i~~~d~~~i~~~a~~~~iDLvvvGPE~PL~~GivD~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~  112 (415)
T PRK13790         33 GNEAMTPIAEVHTEISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIME  112 (415)
T ss_pred             CCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHH
T ss_conf             95576522302467685589999999998199999989607866348888643897598949799515126999999999


Q ss_pred             HCCCCEEEECHHHH-CCCCHHHHHHHCC--CEEEECCCCCCCCCCCEE
Q ss_conf             37998999342653-0222047542189--389750079888754079
Q gi|254780659|r   57 ETGIDVITTGNHVW-DKREALVFSQRHC--KFLRPANYPPNTPGNGSG  101 (274)
Q Consensus        57 ~~GvDviT~GNH~w-d~kei~~~i~~~~--~ilRP~N~p~~~PG~G~~  101 (274)
                      ++||-  |.--.+| |..|...|+++.+  -+|++--.   +.|+|..
T Consensus       113 ~~~IP--Ta~~~~f~~~~~A~~~l~~~~~p~VIKaDGL---AaGKGV~  155 (415)
T PRK13790        113 KYNIP--TADYKEVERKKDALTYIENCELPVVVKKDGL---AAGKGVI  155 (415)
T ss_pred             HCCCC--CCCEEEECCHHHHHHHHHHCCCCEEEECCCC---CCCCCEE
T ss_conf             82979--7772550879999999861799889966866---7899569


No 73 
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain.  FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2  is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=57.32  E-value=17  Score=17.66  Aligned_cols=16  Identities=19%  Similarity=0.133  Sum_probs=6.6

Q ss_pred             CCCCHHHHHHHHHCCC
Q ss_conf             6789999999983799
Q gi|254780659|r   45 FGITEKIFCEMMETGI   60 (274)
Q Consensus        45 ~Git~~~~~~l~~~Gv   60 (274)
                      ..++.+..++-.++|.
T Consensus       130 r~~~~~li~RA~~aG~  145 (344)
T cd02922         130 RTKTEELLKRAEKLGA  145 (344)
T ss_pred             HHHHHHHHHHHHHCCC
T ss_conf             7999999999998699


No 74 
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205   This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=57.04  E-value=9.3  Score=19.29  Aligned_cols=32  Identities=31%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             CCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             8678-9999999983799899934265302220
Q gi|254780659|r   44 GFGI-TEKIFCEMMETGIDVITTGNHVWDKREA   75 (274)
Q Consensus        44 G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei   75 (274)
                      |=|| |++.|++|..+|+|+|-+||=++++..+
T Consensus       201 GGGIRs~E~A~~~a~AgAD~~VtGnvie~~~nv  233 (242)
T TIGR01768       201 GGGIRSVEKARKLAEAGADVVVTGNVIEEDDNV  233 (242)
T ss_pred             ECCCCCHHHHHHHHHCCCCEEEEEEEEECCHHH
T ss_conf             076478899999953459899984687516378


No 75 
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase; InterPro: IPR010107   This entry represents Glutamate decarboxylase (gad;) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms .   Gad has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, GAD65 and GAD67, both active at neutral pH . Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium  and Gram-positive bacterium .   A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae, Gad expression is required for normal oxidative stress tolerance . In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.; GO: 0004351 glutamate decarboxylase activity, 0030170 pyridoxal phosphate binding, 0006536 glutamate metabolic process.
Probab=56.85  E-value=11  Score=18.70  Aligned_cols=51  Identities=16%  Similarity=0.277  Sum_probs=35.9

Q ss_pred             CCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCC-CCCEEEEECCCCCHH
Q ss_conf             99289999960000588332598999999986341368-998899962576228
Q gi|254780659|r  107 NGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKE-QADVIVFDFHAETTS  159 (274)
Q Consensus       107 ~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~-~~~~i~VDfHaEaTS  159 (274)
                      +...|+|+-++|-+|=.. +|++ +.+..+|+++..+. +-.-+=|++|.-|-|
T Consensus       200 DENTIGV~~ILG~TyTG~-yE~v-~~lnD~L~~~~~~~PDWsg~d~PiHvDAAS  251 (493)
T TIGR01788       200 DENTIGVVAILGTTYTGE-YEDV-KALNDLLEELNAKTPDWSGWDIPIHVDAAS  251 (493)
T ss_pred             CCCCCEEEEECCCCCCCC-CCCH-HHHHHHHHHHHCCCCCCCCCCCCEEEECCC
T ss_conf             767524888747232587-0888-999999999742788747787664774467


No 76 
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=56.70  E-value=14  Score=18.19  Aligned_cols=65  Identities=29%  Similarity=0.406  Sum_probs=47.5

Q ss_pred             EEEEEEECCCH---------HHHHHHHHHHHHHH--HHCCCCE----EEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             26999720276---------88999999808988--8609989----999170047886789999999983799899934
Q gi|254780659|r    2 RLLFLGDIVGK---------TGRSIVYEMLPRLI--RDFQLDF----VIANGENSAGGFGITEKIFCEMMETGIDVITTG   66 (274)
Q Consensus         2 kiLfiGDIvG~---------~Gr~~v~~~Lp~l~--~~~~~Df----vIaNgENaa~G~Git~~~~~~l~~~GvDviT~G   66 (274)
                      .|--+|||+|+         +||+ |.+.|=.-+  +..++|+    .|+=.-=..+--|||.+.|  |.++|.|=|=.=
T Consensus       320 gIYAlGDV~Gk~~LTPVAIaAGR~-LS~RLF~~~kf~~~kLDY~~vPtVvFsHP~iGtvGLtE~~A--i~~YG~e~vKvY  396 (475)
T TIGR01421       320 GIYALGDVVGKVELTPVAIAAGRK-LSERLFNGKKFTDAKLDYNNVPTVVFSHPPIGTVGLTEKEA--IEKYGKENVKVY  396 (475)
T ss_pred             CEEEECCEEECCCCCHHHHHHHHH-HHHHCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCHHHH--HHHCCCCCEEEE
T ss_conf             858722268110077378773036-78763687300013465024880387377843003787899--986087544374


Q ss_pred             HHH
Q ss_conf             265
Q gi|254780659|r   67 NHV   69 (274)
Q Consensus        67 NH~   69 (274)
                      +=.
T Consensus       397 ~ss  399 (475)
T TIGR01421       397 KSS  399 (475)
T ss_pred             ECC
T ss_conf             046


No 77 
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=56.04  E-value=4  Score=21.67  Aligned_cols=14  Identities=0%  Similarity=0.022  Sum_probs=7.9

Q ss_pred             CCHHHHHHHHHHHC
Q ss_conf             59899999998634
Q gi|254780659|r  127 DDPFRTADKILATC  140 (274)
Q Consensus       127 d~PF~~~d~~l~~~  140 (274)
                      .+-|+.+.+.+++.
T Consensus        93 s~i~k~~~~~i~~~  106 (289)
T PRK13426         93 ANIIKMLLQTIGEY  106 (289)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             89999999999999


No 78 
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=54.37  E-value=15  Score=18.00  Aligned_cols=15  Identities=20%  Similarity=0.503  Sum_probs=5.7

Q ss_pred             HHHHHHHH-HCCCCEE
Q ss_conf             99999998-3799899
Q gi|254780659|r   49 EKIFCEMM-ETGIDVI   63 (274)
Q Consensus        49 ~~~~~~l~-~~GvDvi   63 (274)
                      ..+.++|. +.++.++
T Consensus        41 ~vLl~~l~~~~~~~vl   56 (218)
T pfam01935        41 AVLLEELLEKKGATVL   56 (218)
T ss_pred             HHHHHHHHHCCCCCEE
T ss_conf             9999999854799789


No 79 
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.25  E-value=19  Score=17.34  Aligned_cols=125  Identities=15%  Similarity=0.194  Sum_probs=73.7

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+..-.+.+.++.++..+-+-+        |-|| +.+.+++++++|+|-+..|--+.+. +.+.-+-
T Consensus        45 ~lhivDLd~a~~g~~~n~~~I~~i~~~~~~piqv--------GGGIrs~e~i~~~l~~Ga~kViigt~a~~~-~~l~~~~  115 (228)
T PRK04128         45 KIHVVDLDGAFEGKPKNLDVVKNIIEETGLKVQV--------GGGFRTYESIKDAYEIGVENVIIGTKAFDI-EFLEKIT  115 (228)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEE--------CCCCCCHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHH
T ss_conf             8999988030149832699999998654962897--------386077999999996899769814512580-8999999


Q ss_pred             HCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf             18938975007988875407999848992899999600005883325989999999863413689988999625762289
Q gi|254780659|r   81 RHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE  160 (274)
Q Consensus        81 ~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE  160 (274)
                      +        +|+.     =...++.++| +++     .+-+....--.|...++ .+++.    -..+++-|...+-|..
T Consensus       116 ~--------~~~~-----ivvslD~k~~-~v~-----~~gw~~~~~~~~~~~~~-~~~~~----~~~ii~tdI~~dGt~~  171 (228)
T PRK04128        116 S--------EFNG-----ITVSLDVKGG-RIA-----TKGWLEESSIKVEDAYK-MLRNY----VNRFIYTSIERDGTLT  171 (228)
T ss_pred             H--------HCCC-----CCEEEECCCC-EEE-----CCCCEECCCCCHHHHHH-HHHHH----CCCEEEEEECCCCCCC
T ss_conf             7--------2647-----6368871378-685-----26848889988999999-99863----8453763126543003


No 80 
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=52.90  E-value=6.1  Score=20.50  Aligned_cols=14  Identities=0%  Similarity=0.116  Sum_probs=6.8

Q ss_pred             CCHHHHHHHHHHHC
Q ss_conf             59899999998634
Q gi|254780659|r  127 DDPFRTADKILATC  140 (274)
Q Consensus       127 d~PF~~~d~~l~~~  140 (274)
                      .+-++.+...+++.
T Consensus        93 s~i~k~~~~~~~~~  106 (287)
T PRK05621         93 SNIIKKVLELIKEL  106 (287)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999987


No 81 
>PRK07695 transcriptional regulator TenI; Provisional
Probab=52.54  E-value=7.9  Score=19.76  Aligned_cols=147  Identities=10%  Similarity=0.045  Sum_probs=69.2

Q ss_pred             HHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCH
Q ss_conf             99999983799899934265302220475421893897500798887540799984899289999960000588332598
Q gi|254780659|r   50 KIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDP  129 (274)
Q Consensus        50 ~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~P  129 (274)
                      ...++.++.|||+|-.=.-..+.+|++...+.-    +.+..+    .. ..+++.  ...++..-=...+.+. .-|.|
T Consensus        18 ~~v~~al~~Gv~~iQlR~K~~s~~e~~~~~~~l----~~~~~~----~~-~lIIND--~~dlA~~~~adGVHLG-q~D~~   85 (202)
T PRK07695         18 VAVAMQIESEVDYIHIREREKSAKELYEGVESL----LKKGVP----AS-KLIIND--RVDIALLLNIHRVQLG-YRSFD   85 (202)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH----HHHCCC----CC-EEEEEC--CHHHHHHCCCCEEEEC-HHHCC
T ss_conf             999999987999999889997999999999999----984899----99-899979--1999988499989218-21219


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC----EEEEEECCCCCCCCHHHHCCCCEEEEECCCC-C-
Q ss_conf             999999986341368998899962576228999999760895----7799806976246545640367289840560-1-
Q gi|254780659|r  130 FRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSR----ASLVVGTHTHIPTADAQILDGGTGYITDLGM-C-  203 (274)
Q Consensus       130 F~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGr----VsaVvGTHTHV~TaD~rILp~GTayiTDvGM-t-  203 (274)
                      ...+.+.+...       .|=+--|.  -.|  +.--.-.|-    ++.++-|-||- ...    |-|...+..+-- + 
T Consensus        86 ~~~~R~~~~~~-------~IG~S~h~--~~e--~~~a~~~gaDYi~~Gpif~T~tK~-~~~----~~G~~~l~~~~~~~~  149 (202)
T PRK07695         86 VKSVREKFPYL-------HVGYSVHS--LEE--AIQAEKNGADYVVYGHVFPTDCKK-GVP----ARGLEELSEIARALS  149 (202)
T ss_pred             HHHHHHHCCCC-------EEEEECCC--HHH--HHHHHHCCCCEEEECCCCCCCCCC-CCC----CCCHHHHHHHHHHCC
T ss_conf             99999877998-------99995799--999--999977699969972541268888-988----789999999998679


Q ss_pred             CCHHHCCCCCHHHHHHHHHHC
Q ss_conf             371210354746789888516
Q gi|254780659|r  204 GDYNSSIGLDKEEPINRFITQ  224 (274)
Q Consensus       204 G~~~SVIG~~~~~~i~rf~t~  224 (274)
                      =|.--+-|++++.+-+=+.+|
T Consensus       150 iPvvAIGGI~~~ni~~v~~~G  170 (202)
T PRK07695        150 IPVIAIGGITPENTRDVLAAG  170 (202)
T ss_pred             CCEEEECCCCHHHHHHHHHCC
T ss_conf             998998698999999999829


No 82 
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=51.82  E-value=5.8  Score=20.63  Aligned_cols=19  Identities=5%  Similarity=0.118  Sum_probs=9.8

Q ss_pred             HHHHHHCCCEEEEEECCCC
Q ss_conf             9997608957799806976
Q gi|254780659|r  163 CFAHFVDSRASLVVGTHTH  181 (274)
Q Consensus       163 A~g~~lDGrVsaVvGTHTH  181 (274)
                      .+-.|.+|.+..|.=-.||
T Consensus       159 ~~~~~~~~~~d~v~iiyn~  177 (298)
T PRK13422        159 MLDKFTAGEIDRLYMSSNQ  177 (298)
T ss_pred             HHHHHHCCCCCEEEEEECE
T ss_conf             9999866888889997220


No 83 
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=51.40  E-value=6.4  Score=20.33  Aligned_cols=13  Identities=23%  Similarity=-0.013  Sum_probs=6.2

Q ss_pred             CHHHHHHHHHHHC
Q ss_conf             9899999998634
Q gi|254780659|r  128 DPFRTADKILATC  140 (274)
Q Consensus       128 ~PF~~~d~~l~~~  140 (274)
                      +-|+.+.+.+++.
T Consensus        90 ~v~k~~~~~~~~~  102 (285)
T TIGR03323        90 VILTFAAEELARL  102 (285)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999856


No 84 
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=51.12  E-value=13  Score=18.36  Aligned_cols=70  Identities=20%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             HHHHHHCCCCEEEECHHH-HCCCCH---HHHHHH--CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCC
Q ss_conf             999983799899934265-302220---475421--89389750079888754079998489928999996000058833
Q gi|254780659|r   52 FCEMMETGIDVITTGNHV-WDKREA---LVFSQR--HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPL  125 (274)
Q Consensus        52 ~~~l~~~GvDviT~GNH~-wd~kei---~~~i~~--~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~  125 (274)
                      ++++.++|.|.|--|--. -+...+   +..+.+  -|-+|-|-|-..-+|+.-          -+.++.||-       
T Consensus        24 ~~~~~~sgtDaI~VGGS~~vt~~~~~~~~~~ik~~~lPviLfPg~~~~vs~~aD----------a~lf~slln-------   86 (229)
T PRK04169         24 DLAICESGTDAIMIGGSDGVTEENVDELVSRIKRYDLPVILFPGNVEGISPGAD----------AYLFPSVLN-------   86 (229)
T ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCC----------EEEEEEEEC-------
T ss_conf             999986299999988866568699999999986139898994598877485778----------688676534-------


Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             2598999999986
Q gi|254780659|r  126 LDDPFRTADKILA  138 (274)
Q Consensus       126 ~d~PF~~~d~~l~  138 (274)
                      -.||...+..-.+
T Consensus        87 s~np~~lig~~~~   99 (229)
T PRK04169         87 SRDPYWIIGAQVE   99 (229)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             8991366789998


No 85 
>PRK13131 consensus
Probab=51.01  E-value=21  Score=17.02  Aligned_cols=158  Identities=13%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH-CCCEEEECCCCCCCCCCCEEEE-ECCC-CCEEEEEEEEHHHCC
Q ss_conf             789999999983799899934265302220475421-8938975007988875407999-8489-928999996000058
Q gi|254780659|r   46 GITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR-HCKFLRPANYPPNTPGNGSGLY-CAKN-GSNVLVANIMGRVFM  122 (274)
Q Consensus        46 Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~-~~~ilRP~N~p~~~PG~G~~i~-~~~~-g~ki~Vinl~Gr~fM  122 (274)
                      -.|.+..+.|-+.|+|+|-.|=--=|---==+.|++ ..|-|+-.|.     -+...++ ..++ ..++-+      ++|
T Consensus        25 e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~-----~~~~~~~~~~r~~~~~~pi------vlM   93 (257)
T PRK13131         25 ELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASM-----AKNFQLLKKIRDYNHHIPI------GLL   93 (257)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHCCCCCCE------EEE
T ss_conf             89999999999779999997899888554559999999999978988-----9999999998704999888------999


Q ss_pred             CCCCCCHHHH--HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHHC---CCCEE
Q ss_conf             8332598999--999986341368998-8999625762289999997608-957799806976246545640---36728
Q gi|254780659|r  123 NPLLDDPFRT--ADKILATCPLKEQAD-VIVFDFHAETTSEKQCFAHFVD-SRASLVVGTHTHIPTADAQIL---DGGTG  195 (274)
Q Consensus       123 ~~~~d~PF~~--~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A~g~~lD-GrVsaVvGTHTHV~TaD~rIL---p~GTa  195 (274)
                      .  .-||+..  .++++++++. ...| .|++|.--|-..|=...+.-.+ ..+..|  |-   .|.++||-   ...++
T Consensus        94 ~--Y~N~i~~yG~e~F~~~~~~-~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lv--aP---tt~~~Ri~~i~~~s~G  165 (257)
T PRK13131         94 A--YANLIFSYGVDGFYAQAKE-CGVDSVLIADMPLIEKELVIKSAQKHQIKQIFIA--SP---NASVKDLEQVATHSQG  165 (257)
T ss_pred             C--CHHHHHHHCHHHHHHHHHH-CCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEE--CC---CCCHHHHHHHHHCCCC
T ss_conf             2--7689998579999999986-5998565589996788999999997798479972--89---9988999999835897


Q ss_pred             ---EEECCCCCCCHHHCCCCCHHHHHHHHHH
Q ss_conf             ---9840560137121035474678988851
Q gi|254780659|r  196 ---YITDLGMCGDYNSSIGLDKEEPINRFIT  223 (274)
Q Consensus       196 ---yiTDvGMtG~~~SVIG~~~~~~i~rf~t  223 (274)
                         |++=.|-||...+. --+....++|.+.
T Consensus       166 FiY~vs~~GvTG~~~~~-~~~~~~~i~~ik~  195 (257)
T PRK13131        166 YIYTLARSGVTGASHTL-ENDASAIIKTLKT  195 (257)
T ss_pred             EEEEEECCCCCCCCCCC-CHHHHHHHHHHHH
T ss_conf             49998457677986434-0769999999996


No 86 
>TIGR02183 GRXA Glutaredoxin, GrxA family; InterPro: IPR011902   Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system .    Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond.   Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed  that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro.    This entry includes the Escherichia coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase .; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=50.43  E-value=21  Score=17.03  Aligned_cols=41  Identities=27%  Similarity=0.292  Sum_probs=24.2

Q ss_pred             EEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
Q ss_conf             600005883325989999999863413689988999625762289
Q gi|254780659|r  116 IMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE  160 (274)
Q Consensus       116 l~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE  160 (274)
                      +-||..= |++=-.-+.++++..+.   .+-++-+||+|||--|-
T Consensus         4 IfGr~gC-~YCVRA~~LaEkl~~~~---~DF~fry~Di~AEGI~K   44 (86)
T TIGR02183         4 IFGRPGC-PYCVRAKQLAEKLAEEL---ADFEFRYIDIHAEGISK   44 (86)
T ss_pred             EECCCCC-CHHHHHHHHHHHHHHHC---CCCCCEEEEEEECCCCH
T ss_conf             7327998-40233688899988640---35562058887458871


No 87 
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=50.13  E-value=7.2  Score=20.02  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=34.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCC-CCCCCHHHHCCCCEEEEECCCCCCCHHHCC
Q ss_conf             899962576228999999760895779980697-624654564036728984056013712103
Q gi|254780659|r  148 VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT-HIPTADAQILDGGTGYITDLGMCGDYNSSI  210 (274)
Q Consensus       148 ~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHT-HV~TaD~rILp~GTayiTDvGMtG~~~SVI  210 (274)
                      .-++|-||-+-.---+.    +++...|.||-| |+.+++..        .-=-||||||++.+
T Consensus       251 ~g~IDAhag~~Gv~~~~----~~~l~~I~GTStC~m~~s~~~--------~~v~GvwGpy~~ai  302 (544)
T COG1069         251 AGIIDAHAGAVGVGGAQ----PGSLAMIAGTSTCHMLLSEKP--------RFVPGVWGPYDGAV  302 (544)
T ss_pred             CCCEECCCCCCCCCCCC----CCEEEEEEECCEEEEEECCCC--------EECCCCCCCCCCCC
T ss_conf             23030014531025578----872799960555899706776--------01586401565432


No 88 
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=50.13  E-value=22  Score=16.93  Aligned_cols=150  Identities=15%  Similarity=0.108  Sum_probs=66.9

Q ss_pred             HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEE-EEEEEHHHCCCCCCC
Q ss_conf             9999999837998999342653022204754218938975007988875407999848992899-999600005883325
Q gi|254780659|r   49 EKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVL-VANIMGRVFMNPLLD  127 (274)
Q Consensus        49 ~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~-Vinl~Gr~fM~~~~d  127 (274)
                      .+..+++++.|+++|-.=.-..+..+......+-..+.+..|-         .++-. +-..++ -++.-| +.+. .-|
T Consensus        15 ~~~l~~~l~~gv~~iqlR~k~~~~~~~~~~a~~~~~~~~~~~~---------~liIn-d~~~lA~~~~~dG-vHl~-~~d   82 (196)
T cd00564          15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGV---------PLIIN-DRVDLALAVGADG-VHLG-QDD   82 (196)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCC---------EEEEC-CHHHHHHHHCCCE-EECC-CCC
T ss_conf             9999999985999999867998999999999999999998099---------79978-8699999739987-9558-466


Q ss_pred             CHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHC-CC--EEEEEECCCCCCC---CHHHHCCCCEEEEECCC
Q ss_conf             989999999863413689988999625762289999997608-95--7799806976246---54564036728984056
Q gi|254780659|r  128 DPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVD-SR--ASLVVGTHTHIPT---ADAQILDGGTGYITDLG  201 (274)
Q Consensus       128 ~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lD-Gr--VsaVvGTHTHV~T---aD~rILp~GTayiTDvG  201 (274)
                      .|...+.+.+..      ..+|=+--|.   .|-...+..+. .-  ++.|+-|-||-..   .....+..=.. .+   
T Consensus        83 ~~~~~~r~~~~~------~~iiG~S~h~---~~e~~~a~~~g~DYi~~gpvf~T~tK~~~~~~~g~~~l~~~~~-~~---  149 (196)
T cd00564          83 LPVAEARALLGP------DLIIGVSTHS---LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAE-LV---  149 (196)
T ss_pred             CCHHHHHHHHCC------CCEEEECCCC---HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH-HC---
T ss_conf             899999987288------9758824788---9999998870999388646557898888778778899999998-67---


Q ss_pred             CCCCHHHCCCCCHHHHHHHHHHC
Q ss_conf             01371210354746789888516
Q gi|254780659|r  202 MCGDYNSSIGLDKEEPINRFITQ  224 (274)
Q Consensus       202 MtG~~~SVIG~~~~~~i~rf~t~  224 (274)
                       --|.--+-|++++.+-+-..+|
T Consensus       150 -~~Pv~AiGGI~~~ni~~~~~~G  171 (196)
T cd00564         150 -EIPVVAIGGITPENAAEVLAAG  171 (196)
T ss_pred             -CCCEEEECCCCHHHHHHHHHCC
T ss_conf             -9998998589999999999809


No 89 
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=49.94  E-value=14  Score=18.19  Aligned_cols=70  Identities=20%  Similarity=0.258  Sum_probs=31.0

Q ss_pred             HHHHHCCCCEEEECHHHHCCC---CHHHHHHH----CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCC
Q ss_conf             999837998999342653022---20475421----89389750079888754079998489928999996000058833
Q gi|254780659|r   53 CEMMETGIDVITTGNHVWDKR---EALVFSQR----HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPL  125 (274)
Q Consensus        53 ~~l~~~GvDviT~GNH~wd~k---ei~~~i~~----~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~  125 (274)
                      +...++|.|.|--|--.--+.   +.+..+.+    -|-+|-|-|-..-+|+.-+          +.++.||.       
T Consensus        19 ~~~~~sgtDai~VGGS~~~~~~~~~~v~~ik~~~~~~PvilfPg~~~~is~~aDa----------~lf~sllN-------   81 (219)
T cd02812          19 KLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPEAVSPGADA----------YLFPSVLN-------   81 (219)
T ss_pred             HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCE----------EEEEEEEC-------
T ss_conf             9999769999999375574477999999999737899989957986656867786----------88687533-------


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             25989999999863
Q gi|254780659|r  126 LDDPFRTADKILAT  139 (274)
Q Consensus       126 ~d~PF~~~d~~l~~  139 (274)
                      -.||...+..-++.
T Consensus        82 s~n~~~lig~~~~a   95 (219)
T cd02812          82 SGDPYWIIGAQAEA   95 (219)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             89923677889999


No 90 
>TIGR01146 ATPsyn_F1gamma ATP synthase F1, gamma subunit; InterPro: IPR000131   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient.   The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex . The best-conserved region of the gamma subunit is its C-terminus, which seems to be essential for assembly and catalysis.   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016020 membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=49.46  E-value=4.8  Score=21.13  Aligned_cols=27  Identities=33%  Similarity=0.708  Sum_probs=18.3

Q ss_pred             CCEEEE---ECCCCCCCHHHCCCCCHHHHHHHHHHCC
Q ss_conf             672898---4056013712103547467898885168
Q gi|254780659|r  192 GGTGYI---TDLGMCGDYNSSIGLDKEEPINRFITQI  225 (274)
Q Consensus       192 ~GTayi---TDvGMtG~~~SVIG~~~~~~i~rf~t~~  225 (274)
                      +-++|+   ||=|+||.|||       .++++....+
T Consensus        81 Kk~~~~v~tsDrGLCGg~N~-------n~~k~~~~~~  110 (330)
T TIGR01146        81 KKVGLLVITSDRGLCGGYNS-------NILKRVEQRA  110 (330)
T ss_pred             CEEEEEEEECCCCCHHHHHH-------HHHHHHHHHH
T ss_conf             72799987058630457889-------9999999998


No 91 
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=48.75  E-value=9.2  Score=19.32  Aligned_cols=14  Identities=14%  Similarity=0.071  Sum_probs=7.1

Q ss_pred             CHHHHHHHHHHHCC
Q ss_conf             98999999986341
Q gi|254780659|r  128 DPFRTADKILATCP  141 (274)
Q Consensus       128 ~PF~~~d~~l~~~~  141 (274)
                      +-++.+.+.+++.+
T Consensus        95 ni~k~~~~~i~~~~  108 (286)
T PRK13427         95 NVNRMAKAKIEEWK  108 (286)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999987


No 92 
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=48.64  E-value=6.6  Score=20.24  Aligned_cols=19  Identities=11%  Similarity=0.090  Sum_probs=8.3

Q ss_pred             HHHHHHCCCEEEEEECCCC
Q ss_conf             9997608957799806976
Q gi|254780659|r  163 CFAHFVDSRASLVVGTHTH  181 (274)
Q Consensus       163 A~g~~lDGrVsaVvGTHTH  181 (274)
                      .+..|+.|.++.|.=-|||
T Consensus       160 ~~~~~~~g~~d~v~iiyn~  178 (291)
T PRK13425        160 ASGMYLRGEVDKVVVVYNE  178 (291)
T ss_pred             HHHHHHCCCCCEEEEEEEC
T ss_conf             9998854898738997222


No 93 
>pfam00231 ATP-synt ATP synthase.
Probab=48.64  E-value=7.3  Score=19.97  Aligned_cols=14  Identities=7%  Similarity=0.202  Sum_probs=7.7

Q ss_pred             CCHHHHHHHHHHHC
Q ss_conf             59899999998634
Q gi|254780659|r  127 DDPFRTADKILATC  140 (274)
Q Consensus       127 d~PF~~~d~~l~~~  140 (274)
                      .+-|+.+.+.+++.
T Consensus        93 ~~i~k~~~~~~~~~  106 (288)
T pfam00231        93 SNVIKAALELIKEL  106 (288)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             89999999999975


No 94 
>PRK13126 consensus
Probab=47.83  E-value=23  Score=16.70  Aligned_cols=72  Identities=10%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             CHHHH-HHHHHHHCCCCCCCC-EEEEECCCCCHHHH---HHHHHHH-CCCEEEEEECCCCCCC-CHHHH-----CCCCEE
Q ss_conf             98999-999986341368998-89996257622899---9999760-8957799806976246-54564-----036728
Q gi|254780659|r  128 DPFRT-ADKILATCPLKEQAD-VIVFDFHAETTSEK---QCFAHFV-DSRASLVVGTHTHIPT-ADAQI-----LDGGTG  195 (274)
Q Consensus       128 ~PF~~-~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK---~A~g~~l-DGrVsaVvGTHTHV~T-aD~rI-----Lp~GTa  195 (274)
                      |||.. .++++++... ...+ .|+.|.--|-.-|-   ...+.-. --.+-.+  +    || .|+|+     ..+|--
T Consensus        78 N~~~~g~~~f~~~~~~-aGvdGlIipDLP~e~~ee~~~~~~~~~~~gl~~I~lv--~----ptt~~~ri~~i~~~s~gfi  150 (237)
T PRK13126         78 EDYAGSPAELFETAAE-VGARGVLAPDLLIDFPGDLERYLELSREYGLAPSFFI--P----SKFPHRLLRRLASLEPDFI  150 (237)
T ss_pred             HHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEE--C----CCCHHHHHHHHHHHCCCEE
T ss_conf             8776569999999987-4997388368887781778999999997699779973--8----9983999999998589879


Q ss_pred             EEECCCCCCCH
Q ss_conf             98405601371
Q gi|254780659|r  196 YITDLGMCGDY  206 (274)
Q Consensus       196 yiTDvGMtG~~  206 (274)
                      |++=.|-||..
T Consensus       151 Yvs~~gvTG~~  161 (237)
T PRK13126        151 YLGLYAATGIE  161 (237)
T ss_pred             EEEEECCCCCC
T ss_conf             99865266764


No 95 
>KOG0685 consensus
Probab=47.40  E-value=11  Score=18.72  Aligned_cols=67  Identities=22%  Similarity=0.355  Sum_probs=56.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE--CHHHHCCCC
Q ss_conf             2699972027688999999808988860998999917004788678999999998379989993--426530222
Q gi|254780659|r    2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT--GNHVWDKRE   74 (274)
Q Consensus         2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~--GNH~wd~ke   74 (274)
                      ||..||  -|-+|..+-++.|    +.--.|+.|.-|++-.||+=-|-.-++..+++|+.-|-+  ||-+|+.-+
T Consensus        23 kIvIIG--AG~AGLaAA~rLl----e~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~   91 (498)
T KOG0685          23 KIVIIG--AGIAGLAAATRLL----ENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAK   91 (498)
T ss_pred             EEEEEC--CCHHHHHHHHHHH----HHCCCEEEEEEECCCCCCEEEEEECCCCEEEECCEEECCCCCCHHHHHHH
T ss_conf             499989--8567799999999----82896489997046667557668727873762466633778873999998


No 96 
>pfam10150 RNase_E_G Ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs.
Probab=47.10  E-value=22  Score=16.88  Aligned_cols=149  Identities=11%  Similarity=0.142  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCEECC------CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH-CC---
Q ss_conf             89999998089888609989999170047------886789999999983799899934265302220475421-89---
Q gi|254780659|r   14 GRSIVYEMLPRLIRDFQLDFVIANGENSA------GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR-HC---   83 (274)
Q Consensus        14 Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa------~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~-~~---   83 (274)
                      ....+.+.+..|+++|  +-+.-+.+++.      ....+..+...++++..++-|..-+.-.. +++.+|+.. .|   
T Consensus        55 ~~e~l~~e~~~L~~~w--~~i~~~~~~~~~p~ll~~~~~~~~~~lrD~~~~~~~~IivDd~~~~-~~~~~~~~~~~p~~~  131 (271)
T pfam10150        55 SEEELAADLEYLLKLW--EEILKKAKSAKAPSLLYEELDLVLRALRDLLNPDVDEIIVDDREAY-EKLKEFLKEFAPELA  131 (271)
T ss_pred             CHHHHHHHHHHHHHHH--HHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHH-HHHHHHHHHHCCCHH
T ss_conf             9999999999999999--9999998459998598838858999999726533509995688999-999999998681111


Q ss_pred             CEEEECC----------C----------CCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC-C-----CCCHHHHHHHHH
Q ss_conf             3897500----------7----------988875407999848992899999600005883-3-----259899999998
Q gi|254780659|r   84 KFLRPAN----------Y----------PPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNP-L-----LDDPFRTADKIL  137 (274)
Q Consensus        84 ~ilRP~N----------~----------p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~-~-----~d~PF~~~d~~l  137 (274)
                      ..++-.+          .          --..|+=||-+++..  .-+.||-+=---|... .     +.-=..++.++-
T Consensus       132 ~~v~~~~~~~~lF~~~~ie~~i~~~~~~~V~L~sGG~lvIe~T--EAlt~IDVNSG~~~~~~~~e~t~l~~NleAa~EIa  209 (271)
T pfam10150       132 KKVELYEGERPLFDLYGIEEQIEKALSRKVWLKSGGYLVIEQT--EALTAIDVNSGKFTGKRNLEETALKTNLEAAKEIA  209 (271)
T ss_pred             HHHHHHCCCCCHHHHCCHHHHHHHHHCCCEEECCCCEEEEECC--CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             1210214788867645859999998448589189977999425--14789850466555667778889999999999999


Q ss_pred             HHCCCCCCCCEEEEECCC-CCHHHHHHHHHH
Q ss_conf             634136899889996257-622899999976
Q gi|254780659|r  138 ATCPLKEQADVIVFDFHA-ETTSEKQCFAHF  167 (274)
Q Consensus       138 ~~~~~~~~~~~i~VDfHa-EaTSEK~A~g~~  167 (274)
                      .++.|++-.-+|+|||=- ...+.+.++--.
T Consensus       210 rQlrLRni~GiIvIDFIdm~~~~~~~~v~~~  240 (271)
T pfam10150       210 RQLRLRNLGGIIVIDFIDMEDEEHRRQVLRA  240 (271)
T ss_pred             HHHHHCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             9998568888399977888987889999999


No 97 
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=47.03  E-value=24  Score=16.62  Aligned_cols=19  Identities=11%  Similarity=0.382  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHCCCCEEEEC
Q ss_conf             9980898886099899991
Q gi|254780659|r   19 YEMLPRLIRDFQLDFVIAN   37 (274)
Q Consensus        19 ~~~Lp~l~~~~~~DfvIaN   37 (274)
                      ...+.++.+++++|.|-++
T Consensus        73 ~~~l~~~~~~~~~DvvH~h   91 (371)
T cd04962          73 ASKIAEVAKRYKLDLLHVH   91 (371)
T ss_pred             HHHHHHHHHHCCCCEEEEC
T ss_conf             9999999997399889972


No 98 
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=46.57  E-value=18  Score=17.38  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=9.9

Q ss_pred             HHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             9998379989993426530222047542
Q gi|254780659|r   53 CEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus        53 ~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      .++.+.|+||+-+==.+..++|....++
T Consensus        27 ~~l~~~G~DVViG~vEthgR~eT~~l~~   54 (211)
T pfam02702        27 HELLERGVDVVIGYVETHGRAETAALLE   54 (211)
T ss_pred             HHHHHCCCCEEEEEECCCCCHHHHHHHC
T ss_conf             9999789956999953799789999976


No 99 
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase; InterPro: IPR013447    Proteins in this entry match the enzyme RhaD, rhamnulose-1-phosphate aldolase (4.1.2.19 from EC).; GO: 0008994 rhamnulose-1-phosphate aldolase activity.
Probab=46.45  E-value=22  Score=16.87  Aligned_cols=43  Identities=19%  Similarity=0.198  Sum_probs=36.7

Q ss_pred             HHHHHHHHCCCCEEEECHHHH--CCCCHHHHHHHCCCEEEECCCC
Q ss_conf             999999837998999342653--0222047542189389750079
Q gi|254780659|r   50 KIFCEMMETGIDVITTGNHVW--DKREALVFSQRHCKFLRPANYP   92 (274)
Q Consensus        50 ~~~~~l~~~GvDviT~GNH~w--d~kei~~~i~~~~~ilRP~N~p   92 (274)
                      |.-.+|...|=|=-=+||=++  +++|+.+|.++..+++|-..+.
T Consensus        15 ktT~dly~~GWDERNGGNisl~L~~eEv~~Y~~~~~q~~R~Ipl~   59 (273)
T TIGR02624        15 KTTSDLYRLGWDERNGGNISLRLKEEEVEPYLDDFKQVLRKIPLK   59 (273)
T ss_pred             HHHHHHHHCCCCEECCCCCEECCCHHHHHHHHCCCCCCEEEEECC
T ss_conf             988999863882205752200157678988614624110367314


No 100
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=46.39  E-value=7.8  Score=19.78  Aligned_cols=13  Identities=15%  Similarity=0.281  Sum_probs=5.9

Q ss_pred             HHHHHCCCEEEEE
Q ss_conf             9976089577998
Q gi|254780659|r  164 FAHFVDSRASLVV  176 (274)
Q Consensus       164 ~g~~lDGrVsaVv  176 (274)
                      +-+|++|.+..|.
T Consensus       158 ~~~~~~~~~d~v~  170 (291)
T PRK13424        158 INAYLTGELDEVV  170 (291)
T ss_pred             HHHHHCCCCCEEE
T ss_conf             9987558987389


No 101
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=46.32  E-value=25  Score=16.55  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf             699972027688999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r    3 LLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR   81 (274)
Q Consensus         3 iLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~   81 (274)
                      -|.+=|+-+..|+..-.+.+.++.++..+-+.+        |-|| +.+.+++++++|+|-+..|..++..+.+.+.+.+
T Consensus        51 ~lhivDLda~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~~~~~~~l~~Gadkvvigs~~~~~~~~~~~~~~  122 (233)
T cd04723          51 GLYIADLDAIMGRGDNDEAIRELAAAWPLGLWV--------DGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAA  122 (233)
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEECCCHHCCCHHHHHHHHH
T ss_conf             899997865469975399999999878998899--------702276999999986072015245100499899999999


No 102
>PRK08618 ornithine cyclodeaminase; Validated
Probab=45.49  E-value=21  Score=16.97  Aligned_cols=11  Identities=9%  Similarity=0.102  Sum_probs=4.3

Q ss_pred             ECCCCCEEEEE
Q ss_conf             84899289999
Q gi|254780659|r  104 CAKNGSNVLVA  114 (274)
Q Consensus       104 ~~~~g~ki~Vi  114 (274)
                      ...+|..++++
T Consensus        91 d~~TG~p~ail  101 (325)
T PRK08618         91 DFETGEVLAIL  101 (325)
T ss_pred             ECCCCCEEEEE
T ss_conf             88989789998


No 103
>PRK00346 surE stationary phase survival protein SurE; Provisional
Probab=44.77  E-value=26  Score=16.40  Aligned_cols=47  Identities=26%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHH
Q ss_conf             926999-72027688999999808988860998999917004788678999
Q gi|254780659|r    1 MRLLFL-GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEK   50 (274)
Q Consensus         1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~   50 (274)
                      ||||.- -|=+-.||.+++.+.|.++   +++-.|--..|.|+-|..||-.
T Consensus         1 M~ILlTNDDGi~a~Gl~~L~~~l~~~---~~V~VvAP~~~~Sg~g~sit~~   48 (246)
T PRK00346          1 MRILLTNDDGIHAPGIAALAEALREL---ADVTVVAPDRERSGASHSLTLT   48 (246)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCC
T ss_conf             95999707888987899999999756---9899991388875664554468


No 104
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=44.68  E-value=20  Score=17.07  Aligned_cols=94  Identities=13%  Similarity=0.131  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCC
Q ss_conf             99999999837998999342653022204754218938975007988875407999848992899999600005883325
Q gi|254780659|r   48 TEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLD  127 (274)
Q Consensus        48 t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d  127 (274)
                      |-..++.-.+.|+|.|-+==|  --||=...+-.++.+-|..|-      .|. +-+. .-..+.-++ .|.-|-.....
T Consensus        24 Tl~Af~~A~~~G~d~iE~DV~--lTkDg~~Vv~HD~~l~Rtt~~------~~~-v~~~-t~~eL~~ld-~g~~~~~~~~~   92 (249)
T PRK09454         24 TLAAIDVGARYGHKMIEFDAK--LSADGVIFLLHDDTLERTSNG------WGV-AGEL-TWQDLARLD-AGSWYSAAFAG   92 (249)
T ss_pred             HHHHHHHHHHCCCCEEEEEEE--ECCCCCEEEECCCCCCCCCCC------CCE-EECC-CHHHHHHCC-CCCCCCCCCCC
T ss_conf             499999999849999999856--968999999769866544799------513-4315-466642102-34544776799


Q ss_pred             CHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             989999999863413689988999625
Q gi|254780659|r  128 DPFRTADKILATCPLKEQADVIVFDFH  154 (274)
Q Consensus       128 ~PF~~~d~~l~~~~~~~~~~~i~VDfH  154 (274)
                      -+..+++++|+.++  ..--.+.|+.-
T Consensus        93 e~iPtL~evl~~~~--~~~~~l~iEiK  117 (249)
T PRK09454         93 EPLPTLSQVAARCR--AHGMAANIEIK  117 (249)
T ss_pred             CCCCCHHHHHHHHH--HCCCEEEEEEC
T ss_conf             86980999999877--53947988733


No 105
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=44.67  E-value=26  Score=16.39  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             HHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             089888609989999170047886789999999983799899934
Q gi|254780659|r   22 LPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG   66 (274)
Q Consensus        22 Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G   66 (274)
                      ++++..++++|.||+        .+|.++-++.|.++||+++..=
T Consensus        57 ~a~~l~~~gvdvvi~--------~~iG~~a~~~l~~~GIkv~~~~   93 (121)
T COG1433          57 IAELLVDEGVDVVIA--------SNIGPNAYNALKAAGIKVYVAP   93 (121)
T ss_pred             HHHHHHHCCCCEEEE--------CCCCHHHHHHHHHCCCEEEECC
T ss_conf             999999769989997--------7669779999997495799659


No 106
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=44.60  E-value=22  Score=16.81  Aligned_cols=15  Identities=20%  Similarity=0.215  Sum_probs=9.7

Q ss_pred             CHHHHHHHHHHCCCC
Q ss_conf             746789888516886
Q gi|254780659|r  213 DKEEPINRFITQIPR  227 (274)
Q Consensus       213 ~~~~~i~rf~t~~p~  227 (274)
                      ..+.+++|.+...|.
T Consensus       173 ~i~~Av~~aR~~~~~  187 (280)
T COG0157         173 SITEAVRRARAAAPF  187 (280)
T ss_pred             CHHHHHHHHHHHCCC
T ss_conf             599999999975899


No 107
>KOG0566 consensus
Probab=44.56  E-value=13  Score=18.29  Aligned_cols=43  Identities=12%  Similarity=0.109  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH
Q ss_conf             88999999808988860998999917004788678999999998
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM   56 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~   56 (274)
                      +-..+..+|..+|+++|++ +.|+|==-.-+|-----+.|++.+
T Consensus       293 asq~aFdrHf~~L~~~YG~-v~IVNLLgtk~gE~~Ls~~fk~hl  335 (1080)
T KOG0566         293 ASQPAFDRHFSKLREKYGP-VYIVNLLGTKEGEESLSEAFKRHL  335 (1080)
T ss_pred             HHHHHHHHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             3057899999999986196-899985668615899999999998


No 108
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=44.32  E-value=26  Score=16.35  Aligned_cols=80  Identities=18%  Similarity=0.202  Sum_probs=42.6

Q ss_pred             HHHHHHHHHCCCCEEEECCEEC-CC------------CCCCCHHHH---------HHH-HHCCCCEEEECHHHHC-CCCH
Q ss_conf             9808988860998999917004-78------------867899999---------999-8379989993426530-2220
Q gi|254780659|r   20 EMLPRLIRDFQLDFVIANGENS-AG------------GFGITEKIF---------CEM-METGIDVITTGNHVWD-KREA   75 (274)
Q Consensus        20 ~~Lp~l~~~~~~DfvIaNgENa-a~------------G~Git~~~~---------~~l-~~~GvDviT~GNH~wd-~kei   75 (274)
                      +.|-.+-++.++|+||+--|.- +.            =||.+++-|         ++| .++||-. |.--.+|+ ..+.
T Consensus        59 ~~i~~fa~~~~IDLvvVGPE~PL~~Gi~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPt-ta~~~~f~~~~~A  137 (485)
T PRK05784         59 GEVVKAAEEVSPDLVVIGPEEPLFAGVADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPG-RLRYGVFKDVEEA  137 (485)
T ss_pred             HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCC-CCCCCCCCCHHHH
T ss_conf             999999998199999989738876125899973799078968899414127889999999728996-6401213899999


Q ss_pred             HHHHHHCCCEEEECCCCCCCCCCCEEE
Q ss_conf             475421893897500798887540799
Q gi|254780659|r   76 LVFSQRHCKFLRPANYPPNTPGNGSGL  102 (274)
Q Consensus        76 ~~~i~~~~~ilRP~N~p~~~PG~G~~i  102 (274)
                      ..|++..+.++--+.=  -+-|+|..|
T Consensus       138 ~~~l~~~~piVIKaDG--LAaGKGV~V  162 (485)
T PRK05784        138 YSFAEYGGSVAIKPAR--QAGGKGVKV  162 (485)
T ss_pred             HHHHHHCCCEEEECCH--HCCCCCEEE
T ss_conf             9998648984992113--306785188


No 109
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.97  E-value=20  Score=17.15  Aligned_cols=76  Identities=14%  Similarity=0.137  Sum_probs=45.8

Q ss_pred             HHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH---HHHCCC-CHHHHHH---HCCCEEEECCCCC
Q ss_conf             80898886099899991700478867899999999837998999342---653022-2047542---1893897500798
Q gi|254780659|r   21 MLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN---HVWDKR-EALVFSQ---RHCKFLRPANYPP   93 (274)
Q Consensus        21 ~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN---H~wd~k-ei~~~i~---~~~~ilRP~N~p~   93 (274)
                      .+..++.+-...|+-.--+-.    ....++++.+..+|.|.|--|-   ++.++- +.+.-|.   +-|-+|-|-|-..
T Consensus         7 l~~~~~~~~~~H~tliDP~k~----~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~   82 (240)
T COG1646           7 LLEKLDWRGKRHLTLIDPDKT----EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSG   82 (240)
T ss_pred             HHHHHHHCCCEEEEEECCCCC----CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHC
T ss_conf             999851136158997476323----4528999999973998899778556447999999999975069988993588100


Q ss_pred             CCCCCCE
Q ss_conf             8875407
Q gi|254780659|r   94 NTPGNGS  100 (274)
Q Consensus        94 ~~PG~G~  100 (274)
                      -+|+.-.
T Consensus        83 is~~aDa   89 (240)
T COG1646          83 ISPYADA   89 (240)
T ss_pred             CCCCCCE
T ss_conf             5725776


No 110
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.79  E-value=24  Score=16.61  Aligned_cols=26  Identities=12%  Similarity=0.146  Sum_probs=12.4

Q ss_pred             CCCCHHHCCCCCH--------HHHHHHHHHCCCC
Q ss_conf             0137121035474--------6789888516886
Q gi|254780659|r  202 MCGDYNSSIGLDK--------EEPINRFITQIPR  227 (274)
Q Consensus       202 MtG~~~SVIG~~~--------~~~i~rf~t~~p~  227 (274)
                      ..|-+|+|+-.+-        +..++++....|.
T Consensus       156 R~gLsd~iLiKdNHi~~~g~i~~~v~~~~~~~~~  189 (277)
T PRK05742        156 RIGLYDAFLIKENHIAACGGIAQAVAAAHRIAPG  189 (277)
T ss_pred             CCCCCCEEEEECCHHHHCCCHHHHHHHHHHHCCC
T ss_conf             5887635897454655506799999999984899


No 111
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.66  E-value=25  Score=16.54  Aligned_cols=14  Identities=14%  Similarity=0.197  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             46789888516886
Q gi|254780659|r  214 KEEPINRFITQIPR  227 (274)
Q Consensus       214 ~~~~i~rf~t~~p~  227 (274)
                      -...+.+++...|.
T Consensus       179 ~~~~i~~~r~~~~~  192 (281)
T PRK06543        179 LTEALRHVRAQLGH  192 (281)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999975899


No 112
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.44  E-value=22  Score=16.86  Aligned_cols=28  Identities=21%  Similarity=0.083  Sum_probs=23.9

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf             4788678999999998379989993426
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNH   68 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH   68 (274)
                      +|++.||...+++.|.+.|.+|+-.+..
T Consensus        15 aag~~GIG~a~A~~la~~Ga~Vv~~~~~   42 (252)
T PRK06079         15 VANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9998779999999999869999998488


No 113
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=43.35  E-value=27  Score=16.26  Aligned_cols=174  Identities=20%  Similarity=0.242  Sum_probs=87.1

Q ss_pred             CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH---CC----------CCEEEEC
Q ss_conf             926999-720276889999998089888609989999170047886789999999983---79----------9899934
Q gi|254780659|r    1 MRLLFL-GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME---TG----------IDVITTG   66 (274)
Q Consensus         1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~---~G----------vDviT~G   66 (274)
                      ||||.- -|=+-.||.+++.+.|.++   ..+-.|--..|.|+-|.+||-..--++.+   .|          +||+-+|
T Consensus         1 MrILlTNDDGi~a~Gi~~L~~~l~~~---g~V~VVAP~~~~Sg~g~siTl~~Plr~~~~~~~g~~~yav~GTPaDCV~la   77 (266)
T PRK13934          1 MKILVTNDDGVHSPGLRLLYEFVSPL---GEVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLA   77 (266)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCHHHHHHHH
T ss_conf             96999807998988899999999847---999999548998677577037997067885268851799779889999999


Q ss_pred             HHHHCCCCHHHHHHHCCC-EEEECCCCCCCCCCCEEEEEC----------CCCC-EEEEEEEEHH--HCCCCCCCCHHHH
Q ss_conf             265302220475421893-897500798887540799984----------8992-8999996000--0588332598999
Q gi|254780659|r   67 NHVWDKREALVFSQRHCK-FLRPANYPPNTPGNGSGLYCA----------KNGS-NVLVANIMGR--VFMNPLLDDPFRT  132 (274)
Q Consensus        67 NH~wd~kei~~~i~~~~~-ilRP~N~p~~~PG~G~~i~~~----------~~g~-ki~Vinl~Gr--~fM~~~~d~PF~~  132 (274)
                      =|.++         +.|. +|-=.|.-.+. |.-. +|-+          --|. -|++-.....  -+...  ...|..
T Consensus        78 l~~l~---------~~PDLVvSGIN~G~Nl-G~dv-i~ySGTV~AA~Eg~~~GiPsIA~S~~~~~~~~~~~~--~~~~~~  144 (266)
T PRK13934         78 TYGLG---------RKYDLVLSGINLGDNT-SLQV-ILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLED--GEALEI  144 (266)
T ss_pred             HHCCC---------CCCCEEEECCCCCCCC-CCCC-EECCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC--HHHHHH
T ss_conf             86337---------8988899677578866-7240-151458899999985699859998432782100230--689999


Q ss_pred             HHHH----HHHC---CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEE
Q ss_conf             9999----8634---1368998899962576228999999760895779980697624654564036728984
Q gi|254780659|r  133 ADKI----LATC---PLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYIT  198 (274)
Q Consensus       133 ~d~~----l~~~---~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiT  198 (274)
                      +..+    ++.+   .+.+.+++.=|-|=.-...|.       .++++ -.|.+-.....+.|+=|.|.-|--
T Consensus       145 ~~~~~~~i~~~~l~~~~P~~~~lLNVN~P~~~~~~i-------k~~vt-r~g~~~~~~~~~~r~dprG~~yyW  209 (266)
T PRK13934        145 MKAVVRATAEYVLKRGMPKGVDVISVNFPRRLRRGV-------KAKLV-KAAKLRFAQQVERRVDPRGRAYYW  209 (266)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHCC-------EEEEE-EECCCCCCCCEEEEECCCCCEEEC
T ss_conf             999999999999864899877445336898853217-------08999-705744567614758879984675


No 114
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=43.12  E-value=24  Score=16.66  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=25.8

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHH---CCCCEEEECCEE
Q ss_conf             9269997202768899999980898886---099899991700
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRD---FQLDFVIANGEN   40 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~---~~~DfvIaNgEN   40 (274)
                      |||++||  ||..|.+++...+..=.+.   +..+++-+|-..
T Consensus         1 Mri~vIG--vGgAG~nivd~l~~~~~~~~~~~~~~~iAvNTd~   41 (349)
T cd02202           1 MRVLIIG--VGQAGGRIVDALNRHDKRSGFGYCVGALAINTAK   41 (349)
T ss_pred             CEEEEEE--ECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCH
T ss_conf             9599998--4560289999999837656766517899998889


No 115
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=42.95  E-value=28  Score=16.22  Aligned_cols=26  Identities=35%  Similarity=0.450  Sum_probs=13.2

Q ss_pred             CCCCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf             78867899999999837998999342
Q gi|254780659|r   42 AGGFGITEKIFCEMMETGIDVITTGN   67 (274)
Q Consensus        42 a~G~Git~~~~~~l~~~GvDviT~GN   67 (274)
                      |||+=-+++...+.+++|++.+|+.|
T Consensus       144 AGGLI~~~edv~~aL~aGA~aVSTS~  169 (174)
T pfam04309       144 AGGLIRTEEEVREALKAGAVAVSTSN  169 (174)
T ss_pred             EECCCCCHHHHHHHHHCCCEEEECCC
T ss_conf             76783889999999984996998788


No 116
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.77  E-value=26  Score=16.43  Aligned_cols=13  Identities=23%  Similarity=0.220  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             4678988851688
Q gi|254780659|r  214 KEEPINRFITQIP  226 (274)
Q Consensus       214 ~~~~i~rf~t~~p  226 (274)
                      .++.+++.+...|
T Consensus       167 ~~~ai~~~r~~~~  179 (272)
T PRK05848        167 LKSFIQHARKNIP  179 (272)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998589


No 117
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=42.16  E-value=11  Score=18.87  Aligned_cols=15  Identities=7%  Similarity=0.220  Sum_probs=8.7

Q ss_pred             CCHHHHHHHHHHHCC
Q ss_conf             598999999986341
Q gi|254780659|r  127 DDPFRTADKILATCP  141 (274)
Q Consensus       127 d~PF~~~d~~l~~~~  141 (274)
                      .+-++.+.+.+++.+
T Consensus        93 s~i~k~~~~~i~~~~  107 (286)
T PRK13423         93 ANLCKAAERFIKENG  107 (286)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999876


No 118
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.93  E-value=29  Score=16.12  Aligned_cols=81  Identities=15%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             EEEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             6999720276-88999999808988860998999917004788678-999999998379989993426530222047542
Q gi|254780659|r    3 LLFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         3 iLfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      -|.+=|+-|. .|+..-.+.+.++.++..+-+.+        |-|| +.+.+++++++|+|-+..|..++.+++.+.-+-
T Consensus        47 ~lhivDLd~a~~g~~~n~~~I~~i~~~~~~pi~v--------GGGIrs~~~i~~~l~~Ga~kvvigs~~~~~~~~~~~i~  118 (240)
T PRK13585         47 TLHLVDLDGAFEGSRKNADIIEKIVEATDVSIQL--------GGGIRSVEDAASLLDLGVDRVILGTAAIENPELVRELS  118 (240)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHH
T ss_conf             7999989772118944499999999737977899--------78858799999999769989993981131842889999


Q ss_pred             H---CCCEEEECCC
Q ss_conf             1---8938975007
Q gi|254780659|r   81 R---HCKFLRPANY   91 (274)
Q Consensus        81 ~---~~~ilRP~N~   91 (274)
                      +   ..+++=-+.+
T Consensus       119 ~~~G~~~ivvsiD~  132 (240)
T PRK13585        119 DEFGSERVMVSLDA  132 (240)
T ss_pred             HHHCCCEEEEEEEE
T ss_conf             87397217999993


No 119
>KOG2872 consensus
Probab=41.76  E-value=29  Score=16.10  Aligned_cols=66  Identities=23%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCC
Q ss_conf             999999808988860998999917004788678999999998379989993426530222047542189389750079
Q gi|254780659|r   15 RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP   92 (274)
Q Consensus        15 r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p   92 (274)
                      +++|++.||++...--|=.+-|+|--         -..++|-..|.|||-+ +++||-+|-.....+.  +----|..
T Consensus       237 ~~~Vk~rl~~~~~~~vPmi~fakG~g---------~~Le~l~~tG~DVvgL-DWTvdp~ear~~~g~~--VtlQGNlD  302 (359)
T KOG2872         237 AEAVKKRLPELGLAPVPMILFAKGSG---------GALEELAQTGYDVVGL-DWTVDPAEARRRVGNR--VTLQGNLD  302 (359)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCC---------HHHHHHHHCCCCEEEE-CCCCCHHHHHHHHCCC--EEEECCCC
T ss_conf             99999861540477776699976860---------6899987348747752-0202678998751783--47756778


No 120
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.53  E-value=28  Score=16.24  Aligned_cols=11  Identities=27%  Similarity=0.069  Sum_probs=4.4

Q ss_pred             HHHHHHHHCCC
Q ss_conf             78988851688
Q gi|254780659|r  216 EPINRFITQIP  226 (274)
Q Consensus       216 ~~i~rf~t~~p  226 (274)
                      ..+++.+...|
T Consensus       172 ~av~~~r~~~~  182 (279)
T PRK08385        172 EAIRRAKEFSV  182 (279)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998489


No 121
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=41.22  E-value=29  Score=16.05  Aligned_cols=66  Identities=18%  Similarity=0.255  Sum_probs=47.2

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEE-----CCCCCCCCHHH-HHHHHHCCCCEEEECHH
Q ss_conf             269997202768899999980898886099899991700-----47886789999-99998379989993426
Q gi|254780659|r    2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGEN-----SAGGFGITEKI-FCEMMETGIDVITTGNH   68 (274)
Q Consensus         2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgEN-----aa~G~Git~~~-~~~l~~~GvDviT~GNH   68 (274)
                      .|||.|-..-.-+-.+....++.+|++|. |..|--=++     .+.-.+++.+- +++|.++|.|.++.|--
T Consensus       109 Evli~gG~~p~~~~~y~~~~~~~ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~a  180 (370)
T COG1060         109 EVLIVGGEHPELSLEYYEELFRTIKEEFP-DLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGA  180 (370)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHCC-CHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCE
T ss_conf             99980576877436799999999988573-0343016788867987436888999999999769876747541


No 122
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen.  It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=41.02  E-value=30  Score=16.03  Aligned_cols=45  Identities=16%  Similarity=0.076  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCEE---EEEEEEEEECCCCCEEEEEE
Q ss_conf             4678988851688654111-578719---99999998479986746789
Q gi|254780659|r  214 KEEPINRFITQIPRNRFVI-ANGPAT---LCGICAEISDVTGLAEKIAP  258 (274)
Q Consensus       214 ~~~~i~rf~t~~p~~r~~~-a~g~~~---l~gv~ieid~~tG~a~~I~r  258 (274)
                      |-..++-+-.|.|.--..+ ...+..   -+|.+++-++....|..|+.
T Consensus       313 P~kllEAma~G~PVV~s~~gg~~e~i~~~~~G~l~~~~d~~~la~~i~~  361 (394)
T cd03794         313 PSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILE  361 (394)
T ss_pred             HHHHHHHHHCCCCEEEECCCCHHHHEECCCEEEEECCCCHHHHHHHHHH
T ss_conf             6899999984997999589980776121880899779999999999999


No 123
>LOAD_HisDeac1 consensus
Probab=40.59  E-value=30  Score=15.99  Aligned_cols=65  Identities=26%  Similarity=0.407  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCC
Q ss_conf             2598999999986341368998899962---5762289999997608957799806976246545640367289840560
Q gi|254780659|r  126 LDDPFRTADKILATCPLKEQADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGM  202 (274)
Q Consensus       126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGM  202 (274)
                      ++|.=-++..++++..   ...+.+|||   |+.-|.|-    +|-|.+|- .+-.|-+    +....| ||.+..|.|.
T Consensus       139 ~NnvAiaa~~~~~~~~---~~rv~iiD~DvHhGnGt~~i----f~~d~~V~-~~SiH~~----~~~~yP-~tg~~~~~g~  205 (295)
T LOAD_HisDeac1   139 FNNIAIAAKYLLKYHG---RIRVLIIDFDVHHGNGTQEA----FYDDDRVL-TVSLHQY----GQGFFP-GTGDIEEIGE  205 (295)
T ss_pred             ECHHHHHHHHHHHHCC---CCCEEEECCCCCCCHHHHHH----HCCCCCEE-EEEECCC----CCCCCC-CCCCHHHHCC
T ss_conf             5789999999998669---98536841788997016698----64899867-7630477----887899-9898887087


Q ss_pred             C
Q ss_conf             1
Q gi|254780659|r  203 C  203 (274)
Q Consensus       203 t  203 (274)
                      -
T Consensus       206 ~  206 (295)
T LOAD_HisDeac1   206 G  206 (295)
T ss_pred             C
T ss_conf             7


No 124
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.46  E-value=29  Score=16.10  Aligned_cols=42  Identities=10%  Similarity=0.128  Sum_probs=17.4

Q ss_pred             HHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCC
Q ss_conf             99999837998999342653022204754218938975007988
Q gi|254780659|r   51 IFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPN   94 (274)
Q Consensus        51 ~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~   94 (274)
                      .++--+-+--|.+-.|-...  ++++..++.+..+..|.++.+|
T Consensus        41 ~~~~~~~are~gi~~G~~~~--~~if~~~~~~~~~~~~~~~~dG   82 (290)
T PRK06559         41 QAKVSLFAKEAGVLAGLTVF--QRVFTLFDAEVTFQNPHQFKDG   82 (290)
T ss_pred             EEEEEEEECCCEEEECHHHH--HHHHHHHCCCEEEEEECCCCCC
T ss_conf             79999997899899669999--9999985995499982336889


No 125
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.34  E-value=30  Score=16.01  Aligned_cols=13  Identities=23%  Similarity=0.207  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             4678988851688
Q gi|254780659|r  214 KEEPINRFITQIP  226 (274)
Q Consensus       214 ~~~~i~rf~t~~p  226 (274)
                      .++++++.+...|
T Consensus       178 i~~av~~~r~~~~  190 (281)
T PRK06106        178 VREAIRRARAGVG  190 (281)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999997579


No 126
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.06  E-value=30  Score=15.99  Aligned_cols=12  Identities=8%  Similarity=0.025  Sum_probs=4.9

Q ss_pred             CCCCHHHCCCCC
Q ss_conf             013712103547
Q gi|254780659|r  202 MCGDYNSSIGLD  213 (274)
Q Consensus       202 MtG~~~SVIG~~  213 (274)
                      ..|-+|+|+-.|
T Consensus       166 R~gL~D~iLIKd  177 (288)
T PRK06978        166 RLALYDGILIKE  177 (288)
T ss_pred             CCCCHHHHEEEH
T ss_conf             688412410303


No 127
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.99  E-value=27  Score=16.31  Aligned_cols=52  Identities=12%  Similarity=-0.049  Sum_probs=32.8

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCC
Q ss_conf             478867899999999837998999342653022204754218-9389750079
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYP   92 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p   92 (274)
                      +++++||...+++.|.+.|.+|+-.++.-..++.+.+...+. ..++.++...
T Consensus        18 aag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvt   70 (272)
T PRK08159         18 VANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVVGHCDVT   70 (272)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             99986899999999998699999974866899999999986498189983789


No 128
>pfam00850 Hist_deacetyl Histone deacetylase domain. Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins.
Probab=39.95  E-value=31  Score=15.92  Aligned_cols=84  Identities=23%  Similarity=0.373  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCC
Q ss_conf             598999999986341368998899962---57622899999976089577998069762465456403672898405601
Q gi|254780659|r  127 DDPFRTADKILATCPLKEQADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMC  203 (274)
Q Consensus       127 d~PF~~~d~~l~~~~~~~~~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMt  203 (274)
                      +|.=-++..++++..   --.+.+|||   |+.-|.|-    +|-|.+|-- +-.|-+    +  ..| ||++..|.|.-
T Consensus       131 NdvAiaa~~l~~~~~---~~rV~iiD~DvHhGnGtq~i----f~~~~~V~~-~SiH~~----~--~yP-~tG~~~~~G~~  195 (302)
T pfam00850       131 NNVAIAARYLLKRYG---LKRVLIVDFDVHHGNGTQEI----FYDDPRVLT-ISIHQD----P--FYP-GTGFADEIGEG  195 (302)
T ss_pred             HHHHHHHHHHHHHCC---CCEEEEEECCCCCCHHHHHH----HHCCCCEEE-EECCCC----C--CCC-CCCCCCCCCCC
T ss_conf             589999999998627---76499984789887227999----816998699-833568----8--889-98871314766


Q ss_pred             CCHHHCC------CCCHHHHHHHHHHCC
Q ss_conf             3712103------547467898885168
Q gi|254780659|r  204 GDYNSSI------GLDKEEPINRFITQI  225 (274)
Q Consensus       204 G~~~SVI------G~~~~~~i~rf~t~~  225 (274)
                      -...+.+      |..-+.-+..|...+
T Consensus       196 ~~~g~~~Nipl~~g~~d~~y~~~~~~~l  223 (302)
T pfam00850       196 RGEGYTLNVPLPPGTGDEEYLAAFEEIL  223 (302)
T ss_pred             CCCCCEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             6778610235799998299999999999


No 129
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.90  E-value=31  Score=15.92  Aligned_cols=52  Identities=12%  Similarity=-0.031  Sum_probs=32.4

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC-CEEEECCCC
Q ss_conf             4788678999999998379989993426530222047542189-389750079
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC-KFLRPANYP   92 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~-~ilRP~N~p   92 (274)
                      +|+|.||...+++.|-+.|.+|+-.+..--..+++.+..++.. .+.-|++..
T Consensus        14 aa~g~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvt   66 (254)
T PRK07533         14 IANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPLLMPLDVR   66 (254)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             88980899999999998799999982887789999999974598189991699


No 130
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.88  E-value=31  Score=15.92  Aligned_cols=14  Identities=43%  Similarity=0.508  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             46789888516886
Q gi|254780659|r  214 KEEPINRFITQIPR  227 (274)
Q Consensus       214 ~~~~i~rf~t~~p~  227 (274)
                      .+.++++.+...|.
T Consensus       179 i~~ai~~~r~~~~~  192 (285)
T PRK07428        179 IGEAITRIRQQIPY  192 (285)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999974899


No 131
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=39.74  E-value=18  Score=17.47  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=8.9

Q ss_pred             EEEEEHHHCCCCCCCCHHHHHH
Q ss_conf             9996000058833259899999
Q gi|254780659|r  113 VANIMGRVFMNPLLDDPFRTAD  134 (274)
Q Consensus       113 Vinl~Gr~fM~~~~d~PF~~~d  134 (274)
                      |-||-.+.|..-+++.|-.+++
T Consensus        82 IYNLaAQS~V~vSFe~P~~T~~  103 (345)
T COG1089          82 IYNLAAQSHVGVSFEQPEYTAD  103 (345)
T ss_pred             HEECCCCCCCCCCCCCCCEEEE
T ss_conf             3303432345530358640253


No 132
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=39.71  E-value=31  Score=15.90  Aligned_cols=216  Identities=13%  Similarity=0.171  Sum_probs=108.7

Q ss_pred             CEEEEEEECC--CH--------HHHHHHHHHHHHHHHHC-CCCEEEECCEECCCCCCCCHHHHHHHH----HCCCCEE-E
Q ss_conf             9269997202--76--------88999999808988860-998999917004788678999999998----3799899-9
Q gi|254780659|r    1 MRLLFLGDIV--GK--------TGRSIVYEMLPRLIRDF-QLDFVIANGENSAGGFGITEKIFCEMM----ETGIDVI-T   64 (274)
Q Consensus         1 MkiLfiGDIv--G~--------~Gr~~v~~~Lp~l~~~~-~~DfvIaNgENaa~G~Git~~~~~~l~----~~GvDvi-T   64 (274)
                      |||+-|-|.=  ..        .-.+.+++-|..+++.. .+|+||+.|.=+-.|.   ++.|+.|.    +.++-++ .
T Consensus        15 mkiiQISD~HL~~~~~~~~~g~dt~~~l~~vl~~i~~~~~~~D~viiTGDLs~dgs---~esY~~l~~~L~~l~~P~~~l   91 (275)
T PRK11148         15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAEQHEFDLIVATGDLAQDHS---AEAYQHFAEGIAPLRKPCVWL   91 (275)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHHCCCCEEEE
T ss_conf             79999836775878876352769899999999999845999889997640258999---999999999997269998995


Q ss_pred             ECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEE--EHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             3426530222047542189389750079888754079998489928999996--00005883325989999999863413
Q gi|254780659|r   65 TGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANI--MGRVFMNPLLDDPFRTADKILATCPL  142 (274)
Q Consensus        65 ~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl--~Gr~fM~~~~d~PF~~~d~~l~~~~~  142 (274)
                      .|||= ++..+..++...+ + .|.         .+ ++.. .+.++..++=  -|+.. ....+.-+.-.++.|++.+ 
T Consensus        92 PGNHD-~~~~m~~~l~~~~-~-~~~---------~~-v~~~-~~w~iI~LDS~~~g~~~-G~L~~~qL~wL~~~L~~~~-  155 (275)
T PRK11148         92 PGNHD-FQPAMYSALQDAG-I-SPA---------KH-VLIG-EHWQILLLDSQVFGVPH-GELSEFQLEWLERKLADAP-  155 (275)
T ss_pred             CCCCC-CHHHHHHHHCCCC-C-CCC---------CE-EEEC-CCEEEEEEECCCCCCCC-CEECHHHHHHHHHHHHHCC-
T ss_conf             88762-3899998603266-7-865---------32-7964-98799999799999777-0839999999999997478-


Q ss_pred             CCCCCEEEEECCCC------------CHHHHHHHHHHHC--CCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             68998899962576------------2289999997608--957799806976246545640367289840560137121
Q gi|254780659|r  143 KEQADVIVFDFHAE------------TTSEKQCFAHFVD--SRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNS  208 (274)
Q Consensus       143 ~~~~~~i~VDfHaE------------aTSEK~A~g~~lD--GrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~S  208 (274)
                        +.. .+|=+|=-            .-....+|.--++  .+|-+|+-=|.|=+-.  ... +|.-|.+     -|.-+
T Consensus       156 --~~~-~lV~lHHpPv~ig~~wmD~~~L~N~~~l~~il~~~~~Vk~v~~GHvHq~~~--~~~-~gi~~~~-----tPSTc  224 (275)
T PRK11148        156 --ERH-TLVLLHHHPLPAGSAWLDQHSLRNAHELAQVLAKFPNVKAILCGHIHQELD--LDW-NGRRLLA-----TPSTC  224 (275)
T ss_pred             --CCC-EEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHH--HEE-CCEEEEE-----CCCCC
T ss_conf             --998-799992798457983200111879999999997489904999626575677--069-9999997-----48721


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             0354746789888516886541115787199999999847998674678998
Q gi|254780659|r  209 SIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGLAEKIAPIR  260 (274)
Q Consensus       209 VIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~gv~ieid~~tG~a~~I~ri~  260 (274)
                      +          -|.-+.  ..|.+.....-  -=++++.+.+.-.+.++|+-
T Consensus       225 ~----------QF~p~s--~~f~~d~~~PG--yR~l~L~~dG~~~t~V~Rv~  262 (275)
T PRK11148        225 V----------QFKPHC--DNFTLDTIAPG--WRELELHADGSLETEVHRLA  262 (275)
T ss_pred             E----------EECCCC--CCCCCCCCCCC--EEEEEECCCCCEEEEEEECC
T ss_conf             1----------146799--87540488997--07999748995898999826


No 133
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=39.47  E-value=31  Score=15.87  Aligned_cols=13  Identities=23%  Similarity=0.317  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             4678988851688
Q gi|254780659|r  214 KEEPINRFITQIP  226 (274)
Q Consensus       214 ~~~~i~rf~t~~p  226 (274)
                      .+..+++++...|
T Consensus       168 i~~av~~~r~~~~  180 (268)
T cd01572         168 ITEAVRRARAAAP  180 (268)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998679


No 134
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.40  E-value=31  Score=15.88  Aligned_cols=14  Identities=7%  Similarity=0.093  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             46789888516886
Q gi|254780659|r  214 KEEPINRFITQIPR  227 (274)
Q Consensus       214 ~~~~i~rf~t~~p~  227 (274)
                      ...++++.+...|.
T Consensus       185 i~~ai~~~r~~~~~  198 (288)
T PRK07896        185 VVAALRAVRAAAPD  198 (288)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999985899


No 135
>pfam09347 DUF1989 Domain of unknown function (DUF1989). This family of proteins are functionally uncharacterized.
Probab=39.37  E-value=31  Score=15.88  Aligned_cols=92  Identities=17%  Similarity=0.245  Sum_probs=64.8

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             75407999848992899999600005883325989999999863413689988999625762289999997608957799
Q gi|254780659|r   96 PGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLV  175 (274)
Q Consensus        96 PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaV  175 (274)
                      ||.|| .+..+.|..+.|+++.|+.--                        |  ++=|.|+-++|...|++-++-.=++-
T Consensus         6 ~g~~~-a~~v~~Gq~lri~d~~G~Q~v------------------------D--~~~~na~d~~Er~s~~~T~~~~~~~~   58 (167)
T pfam09347         6 AGSGW-SFRVKRGQVLRIIDLEGNQVV------------------------D--LLAYNADDPSERYSAADTRKAQGTAY   58 (167)
T ss_pred             CCCEE-EEEECCCCEEEEEECCCCCEE------------------------E--EEEEECCCCCCCCCHHHHHHHHCCCC
T ss_conf             99717-999899988999968999278------------------------7--89970678655659899998744511


Q ss_pred             EECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHH
Q ss_conf             80697624654564036728984056013712103547467898
Q gi|254780659|r  176 VGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPIN  219 (274)
Q Consensus       176 vGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~  219 (274)
                      +++....-+..-|.|-  | .+-|-  +|-.|.++|.--....+
T Consensus        59 l~~G~~L~S~~~rpm~--t-Iv~Dt--~G~HDtl~~~C~~~~~~   97 (167)
T pfam09347        59 LTTGDVLYSNMGRPML--T-IVEDT--VGRHDTLGGACSAESNT   97 (167)
T ss_pred             CCCCCEEECCCCCEEE--E-EECCC--CCCCCCCCCCCCHHHHH
T ss_conf             4789886818997689--9-98568--98602456668989999


No 136
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=38.88  E-value=32  Score=15.82  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=15.5

Q ss_pred             HHHHHHHHCCCCEEEEC---HHHHCCCCHHHHHHH
Q ss_conf             99999983799899934---265302220475421
Q gi|254780659|r   50 KIFCEMMETGIDVITTG---NHVWDKREALVFSQR   81 (274)
Q Consensus        50 ~~~~~l~~~GvDviT~G---NH~wd~kei~~~i~~   81 (274)
                      +-++.|.++|+|+|..-   -|.-...+.+.++.+
T Consensus       245 eRa~~Lv~aGvD~lviD~AhGhs~~v~~~ik~ik~  279 (497)
T PRK07107        245 ERVPALVEAGADVLCIDSSDGYSEWQKRTLDYIKE  279 (497)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99999998599999803435352999999999998


No 137
>cd01143 YvrC Periplasmic binding protein YvrC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=38.84  E-value=32  Score=15.81  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=27.5

Q ss_pred             HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH-HHHC
Q ss_conf             886099899991700478867899999999837998999342-6530
Q gi|254780659|r   26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN-HVWD   71 (274)
Q Consensus        26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN-H~wd   71 (274)
                      .-..+||+||+..       +...+..++|.++|+.++.... +.|+
T Consensus        56 i~~l~PDLVi~~~-------~~~~~~~~~L~~~gi~v~~~~~~~~~~   95 (195)
T cd01143          56 IVALKPDLVIVSS-------SSLAELLEKLKDAGIPVVVLPAASSLD   95 (195)
T ss_pred             HHCCCCCEEEEEC-------CCCHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf             9616999999827-------874779999864188599975899999


No 138
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=38.45  E-value=32  Score=15.77  Aligned_cols=15  Identities=20%  Similarity=0.437  Sum_probs=5.5

Q ss_pred             HHHCCCCEEEECCEE
Q ss_conf             886099899991700
Q gi|254780659|r   26 IRDFQLDFVIANGEN   40 (274)
Q Consensus        26 ~~~~~~DfvIaNgEN   40 (274)
                      -+++++||||+--|+
T Consensus        57 ~~~~~idlviiGPE~   71 (99)
T pfam02844        57 AKEENIDLVVVGPEA   71 (99)
T ss_pred             HHHCCCCEEEECCCH
T ss_conf             998197499989606


No 139
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=38.44  E-value=32  Score=15.79  Aligned_cols=13  Identities=8%  Similarity=0.156  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             4678988851688
Q gi|254780659|r  214 KEEPINRFITQIP  226 (274)
Q Consensus       214 ~~~~i~rf~t~~p  226 (274)
                      ..+++++.+...|
T Consensus       195 i~~av~~ar~~~~  207 (296)
T PRK09016        195 IRQAVEKAFWLHP  207 (296)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998689


No 140
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=38.14  E-value=33  Score=15.74  Aligned_cols=95  Identities=20%  Similarity=0.401  Sum_probs=59.2

Q ss_pred             CEEEEEEEEHHHCCCCC---CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             28999996000058833---259899999998634136899889996257622899999976089577998069762465
Q gi|254780659|r  109 SNVLVANIMGRVFMNPL---LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTA  185 (274)
Q Consensus       109 ~ki~Vinl~Gr~fM~~~---~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~Ta  185 (274)
                      +.++|+-        |.   ++==|.++.+=.+.+|    ..+=.++==..+.-.|.-+.---.|+|..|+|||      
T Consensus       562 KQVavLV--------PTT~LA~QHf~tf~~RF~~fP----v~I~~LSRF~~~~E~~~iL~~la~G~iDI~IGTH------  623 (997)
T TIGR00580       562 KQVAVLV--------PTTILAQQHFETFKERFANFP----VTIELLSRFRSAKEKKEILKELASGKIDILIGTH------  623 (997)
T ss_pred             CEEEEEC--------CHHHHHHHHHHHHHHHHCCCC----EEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCH------
T ss_conf             1168962--------704427778899999737898----1687527756737899999997559422663010------


Q ss_pred             HHHHCCCCEEEEECCCCCC-CHHHCCCCCHHHHHHHHHHC
Q ss_conf             4564036728984056013-71210354746789888516
Q gi|254780659|r  186 DAQILDGGTGYITDLGMCG-DYNSSIGLDKEEPINRFITQ  224 (274)
Q Consensus       186 D~rILp~GTayiTDvGMtG-~~~SVIG~~~~~~i~rf~t~  224 (274)
                        |||.+.+.| =|+|.-= +-.===|++-.+.|+..++.
T Consensus       624 --~lL~k~v~F-KdLGLlIiDEEQRFGV~~KE~lK~~~~~  660 (997)
T TIGR00580       624 --KLLQKDVKF-KDLGLLIIDEEQRFGVKQKEKLKELKTS  660 (997)
T ss_pred             --HHHCCCEEE-ECCCCEEEECCCCCCCCHHHHHCCCCCC
T ss_conf             --412785468-6386469831434883115553001567


No 141
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=37.70  E-value=33  Score=15.70  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC
Q ss_conf             926999720276889999998089888609989999170047886789
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT   48 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git   48 (274)
                      |||.+||   |-|+=-+..-.+++....+.++.+=-|-+.++-|||..
T Consensus         1 MkI~~iG---GGPaGLYfailmK~~~P~~eI~V~ErN~~~dTfGwGVV   45 (770)
T PRK08255          1 MRIVCIG---GGPAGLYFGLLMKLRDPAHEVTVVERNRPYDTFGWGVV   45 (770)
T ss_pred             CEEEEEC---CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEE
T ss_conf             9499977---87589999999986589997479842799995244687


No 142
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=37.67  E-value=24  Score=16.62  Aligned_cols=127  Identities=17%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             CCCCCCHHHHHHHHHCCCCEEEECH-HHH-CCCCHHHHHHHCCC--EEEECCCCC------CCCCCCEEEEECC------
Q ss_conf             8867899999999837998999342-653-02220475421893--897500798------8875407999848------
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVITTGN-HVW-DKREALVFSQRHCK--FLRPANYPP------NTPGNGSGLYCAK------  106 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDviT~GN-H~w-d~kei~~~i~~~~~--ilRP~N~p~------~~PG~G~~i~~~~------  106 (274)
                      .-.|++|+.++++.+.|..++-.-= ++- -|+.+..+-++--.  |+=-.|-|+      .+++..+ ++...      
T Consensus        73 rAHGv~p~v~~~~~~~g~~vvDATCP~V~Kvh~~~~~~~~~Gy~iviiG~~~HpEV~Gi~g~~~~~~~-vi~~~e~~~~l  151 (670)
T PRK00087         73 RSHGVPPEVLEKLKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAI-ISKDGEEAANL  151 (670)
T ss_pred             ECCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHEEECCCCCCEEE-EECCHHHHHCC
T ss_conf             28999989999999879959967882628999999999978798999879999541572444698179-98079998348


Q ss_pred             CCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEE--EECCC
Q ss_conf             992899999600005883325989999999863413689988999625762289999997608957799--80697
Q gi|254780659|r  107 NGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLV--VGTHT  180 (274)
Q Consensus       107 ~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaV--vGTHT  180 (274)
                      ...+++|   .-|+-|..  +. |..+-..|.+    .-.++.+.|-=|.||++.|.-+.-|..+|.++  +|-+.
T Consensus       152 ~~~kv~v---vsQTT~~~--~~-~~~iv~~lk~----~~~e~~v~nTIC~AT~~RQ~a~~~LA~~vD~miVVGG~n  217 (670)
T PRK00087        152 PYPKVCV---VSQTTEKQ--EN-FEKVLKELKK----KGKEVKVFNTICNATAVRQEAAEKLAKKVDVMIVVGGKN  217 (670)
T ss_pred             CCCCEEE---EECCCCCH--HH-HHHHHHHHHH----HCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             8767899---98998988--99-9999999998----788876789854426889999999986599999989989


No 143
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=37.34  E-value=34  Score=15.66  Aligned_cols=13  Identities=23%  Similarity=0.330  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             4678988851688
Q gi|254780659|r  214 KEEPINRFITQIP  226 (274)
Q Consensus       214 ~~~~i~rf~t~~p  226 (274)
                      .+.++++++...|
T Consensus       167 ~~~av~~~r~~~~  179 (269)
T cd01568         167 ITEAVKRARAAAP  179 (269)
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999998689


No 144
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078   This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=37.23  E-value=6.4  Score=20.35  Aligned_cols=28  Identities=39%  Similarity=0.497  Sum_probs=19.8

Q ss_pred             CCHHHHCCCCEEEEECCCCCCCHHHCCC
Q ss_conf             6545640367289840560137121035
Q gi|254780659|r  184 TADAQILDGGTGYITDLGMCGDYNSSIG  211 (274)
Q Consensus       184 TaD~rILp~GTayiTDvGMtG~~~SVIG  211 (274)
                      ..-+||||||=-|+||+=.+=+-=|=||
T Consensus        90 ~~s~Ri~PGgflY~~Dll~~Psi~ski~  117 (269)
T TIGR01743        90 SESERILPGGFLYLTDLLFKPSILSKIG  117 (269)
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             2888403774755534541781577788


No 145
>PRK13122 consensus
Probab=37.18  E-value=34  Score=15.65  Aligned_cols=88  Identities=19%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             CHHHH--HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHH-HHHHHCCCEEEEEECCCCCCCCHHHHC-----CCCEEE-E
Q ss_conf             98999--999986341368998-8999625762289999-997608957799806976246545640-----367289-8
Q gi|254780659|r  128 DPFRT--ADKILATCPLKEQAD-VIVFDFHAETTSEKQC-FAHFVDSRASLVVGTHTHIPTADAQIL-----DGGTGY-I  197 (274)
Q Consensus       128 ~PF~~--~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A-~g~~lDGrVsaVvGTHTHV~TaD~rIL-----p~GTay-i  197 (274)
                      ||+..  .+++++++.. ...| .|++|+--|...|=.. +.-+-=--+..|  +-   .|.|+||-     ..|=-| +
T Consensus        85 N~i~~~G~~~F~~~~~~-~GvdGvIipDLP~ee~~~~~~~~~~~gi~~I~lv--aP---tt~~~Ri~~i~~~s~GFiY~v  158 (242)
T PRK13122         85 NIICHYGEQAFFEKCRD-TGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLV--AM---TTDDKRIKDIVSHAEGFIYTV  158 (242)
T ss_pred             HHHHHHCHHHHHHHHHH-CCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEE--CC---CCCHHHHHHHHHHCCCCEEEE
T ss_conf             69887279999999987-6998677789987889999999986798689871--89---998999999998299966987


Q ss_pred             ECCCCCCCHHHCCCCCHHHHHHHHH
Q ss_conf             4056013712103547467898885
Q gi|254780659|r  198 TDLGMCGDYNSSIGLDKEEPINRFI  222 (274)
Q Consensus       198 TDvGMtG~~~SVIG~~~~~~i~rf~  222 (274)
                      +=.|-||..... --+-+..+++.+
T Consensus       159 s~~GvTG~~~~~-~~~~~~~i~~ik  182 (242)
T PRK13122        159 TMNATTGQNGAF-HPELKRKIESIK  182 (242)
T ss_pred             ECCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf             335435765556-588999999999


No 146
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=37.07  E-value=34  Score=15.63  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=34.0

Q ss_pred             EEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE-ECCCCC---HHHHHHHHHH--HCCCEEEEEE--CC----CCCC
Q ss_conf             600005883325989999999863413689988999-625762---2899999976--0895779980--69----7624
Q gi|254780659|r  116 IMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVF-DFHAET---TSEKQCFAHF--VDSRASLVVG--TH----THIP  183 (274)
Q Consensus       116 l~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~V-DfHaEa---TSEK~A~g~~--lDGrVsaVvG--TH----THV~  183 (274)
                      -.||.-=.+.++.-.+++.++.++.+   +..++++ +.|...   ..|..+...-  +.++|..+-|  ++    ....
T Consensus       190 ~~Grl~~~Kg~~~li~A~~~l~~~~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~lgl~~~V~f~~g~v~~~~~~~~~~  266 (366)
T cd03822         190 TFGLLRPYKGLELLLEALPLLVAKHP---DVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFS  266 (366)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf             98534055485999999999887689---859999958987426678999999997399765532478889999999999


Q ss_pred             CCHHHHCC
Q ss_conf             65456403
Q gi|254780659|r  184 TADAQILD  191 (274)
Q Consensus       184 TaD~rILp  191 (274)
                      .||.-++|
T Consensus       267 ~adv~v~P  274 (366)
T cd03822         267 AADVVVLP  274 (366)
T ss_pred             HCCCCCCC
T ss_conf             55703055


No 147
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=36.72  E-value=29  Score=16.09  Aligned_cols=206  Identities=19%  Similarity=0.227  Sum_probs=95.0

Q ss_pred             CEEEEE-EECCCHHHHHHHHHHHHHHHH-HCCCCEEEECCEECCCCCCCCHHHHHHHHHCC----------CCEEEEC-H
Q ss_conf             926999-720276889999998089888-60998999917004788678999999998379----------9899934-2
Q gi|254780659|r    1 MRLLFL-GDIVGKTGRSIVYEMLPRLIR-DFQLDFVIANGENSAGGFGITEKIFCEMMETG----------IDVITTG-N   67 (274)
Q Consensus         1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~-~~~~DfvIaNgENaa~G~Git~~~~~~l~~~G----------vDviT~G-N   67 (274)
                      ||||.- -|=+-.||.+++.+.+.++.. .+.+-.|--..|.|+-|..||-..--.+.+.|          +||+.+| +
T Consensus         1 MrILiTNDDGi~a~Gi~aL~~~~~~~~~~~~~V~VvAP~~~~Sg~s~ait~~~pl~~~~~~~~~y~v~GTPaDCV~lal~   80 (261)
T PRK13931          1 MRILITNDDGINAPGLEVLEQIATELAGPGGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRRFAAEGSPADCVLAALH   80 (261)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHH
T ss_conf             96999817999981799999999987328985999805999744542757899856776178736547882899999986


Q ss_pred             HHHCCCCHHHHHHHC-CCEEEECCCCCCCCCCCEEEEEC-----------CCCCEEEEEEEEHHHCCCCCCCCHHHHHHH
Q ss_conf             653022204754218-93897500798887540799984-----------899289999960000588332598999999
Q gi|254780659|r   68 HVWDKREALVFSQRH-CKFLRPANYPPNTPGNGSGLYCA-----------KNGSNVLVANIMGRVFMNPLLDDPFRTADK  135 (274)
Q Consensus        68 H~wd~kei~~~i~~~-~~ilRP~N~p~~~PG~G~~i~~~-----------~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~  135 (274)
                      |.+.        +.. +-++==.|.-... |  .-++-+           .+=.-|+|-+..+.-.-  ..++||..+.+
T Consensus        81 ~l~~--------~~~PDLVvSGIN~G~Nl-G--~dv~ySGTVgAA~Eg~~~gipsIAvS~~~~~~~~--~~~~~~~~a~~  147 (261)
T PRK13931         81 DVMK--------DAPPDLVLSGVNRGNNS-A--ENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNE--GLDDPFEAART  147 (261)
T ss_pred             HHCC--------CCCCCEEEECCCCCCCC-E--EEEECHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CCCCHHHHHHH
T ss_conf             4334--------89988899676588765-4--5143318889999999839995788710266544--54450899999


Q ss_pred             --------HHHHCCCCCCCC---EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCC-CCHHHHCCCCEEEEECCCCC
Q ss_conf             --------986341368998---899962576228999999760895779980697624-65456403672898405601
Q gi|254780659|r  136 --------ILATCPLKEQAD---VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIP-TADAQILDGGTGYITDLGMC  203 (274)
Q Consensus       136 --------~l~~~~~~~~~~---~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~-TaD~rILp~GTayiTDvGMt  203 (274)
                              +++... ....+   ++=|.|=....+|       ..|..-+-.|-..+.. ..+.++-|.|--|--=.|..
T Consensus       148 ~~~~ii~~ll~~~~-~~~~~~~~~lNVN~P~~~~~~-------~kg~k~t~~g~r~~~~~~~~~~~~p~g~~~yw~~g~~  219 (261)
T PRK13931        148 HGARVVRKLLAAGP-WEDEDYRLFYNVNFPPVPAAD-------VKGIRVAAQGFREGTRFGVEPHMSPSGRRFLWIKGGA  219 (261)
T ss_pred             HHHHHHHHHHHCCC-CCCCCCCEEEECCCCCCCCCC-------CEEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCC
T ss_conf             99999999996014-237874548834579898556-------4038997712334666315642379997678845787


Q ss_pred             CCHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf             371210354746789888516886
Q gi|254780659|r  204 GDYNSSIGLDKEEPINRFITQIPR  227 (274)
Q Consensus       204 G~~~SVIG~~~~~~i~rf~t~~p~  227 (274)
                      -..++--|-|....-+.+.+=.|-
T Consensus       220 ~~~~~~~~tD~~al~~gyISVTPL  243 (261)
T PRK13931        220 QQVPTAPGTDAAVNLDGYISVTPM  243 (261)
T ss_pred             CCCCCCCCCHHHHHHCCEEEECCC
T ss_conf             787899897999997990897315


No 148
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=36.60  E-value=16  Score=17.71  Aligned_cols=94  Identities=13%  Similarity=0.205  Sum_probs=56.8

Q ss_pred             CCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCE
Q ss_conf             88875407999848992899999600005883325989999999863413689988999625762289999997608957
Q gi|254780659|r   93 PNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRA  172 (274)
Q Consensus        93 ~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrV  172 (274)
                      +-.||..+..+..+.|..|.|+++.|+.--                          -++=|.|+..+|+..|+.-++-.-
T Consensus         5 etvp~g~~~s~~v~~Gq~lrI~d~~G~q~~--------------------------d~~~~na~d~~Er~~~~~T~k~q~   58 (233)
T TIGR03425         5 ETVPGGGYWSKVLRRGTRLRLTDLEGGANV--------------------------SLLLYNADAPLERYNMADTLKVQW   58 (233)
T ss_pred             EEECCCCCEEEEECCCCEEEEEECCCCEEE--------------------------EEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             785799867899999988999918989477--------------------------898981799863305678887744


Q ss_pred             EEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHH
Q ss_conf             799806976246545640367289840560137121035474678
Q gi|254780659|r  173 SLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEP  217 (274)
Q Consensus       173 saVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~  217 (274)
                      ++-+++..-.-+..-|+|-  | -+-|-  ||-+|.++|.--...
T Consensus        59 ~~~l~~G~~L~Sd~gR~m~--t-Iv~DT--~G~HDtl~g~c~~~~   98 (233)
T TIGR03425        59 TAYLTKGHVLLSDMGRVLA--S-IVEDT--SGWHDALCGTSNAAL   98 (233)
T ss_pred             CCCCCCCCEEEECCCCEEE--E-EECCC--CCCCCCCCCCCCHHH
T ss_conf             6115799985879997269--9-96567--767454576578778


No 149
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=36.37  E-value=35  Score=15.56  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=17.0

Q ss_pred             HHHHHHHHHCCCCEEEEC---HHHHCCCCHHHHHHH
Q ss_conf             999999983799899934---265302220475421
Q gi|254780659|r   49 EKIFCEMMETGIDVITTG---NHVWDKREALVFSQR   81 (274)
Q Consensus        49 ~~~~~~l~~~GvDviT~G---NH~wd~kei~~~i~~   81 (274)
                      .+-++.|.++|+|+|..-   -|.=...|.+.++.+
T Consensus       225 ~eRa~~Lv~aGvDvivIDtAhGhs~~vi~~ik~ik~  260 (467)
T pfam00478       225 LERAEALVEAGVDVIVIDSAHGHSEYVLEMIKWIKK  260 (467)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             999999987699889973445441889999999874


No 150
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved  in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=36.30  E-value=35  Score=15.56  Aligned_cols=52  Identities=15%  Similarity=0.110  Sum_probs=37.8

Q ss_pred             CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEE-ECCCCCCCCCCC
Q ss_conf             886789999999983799899934265302220475421893897-500798887540
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLR-PANYPPNTPGNG   99 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilR-P~N~p~~~PG~G   99 (274)
                      .|+|  +..+++|.+.+++++..|-+.++   +..+++..++++- =|=.....||.-
T Consensus        13 DGvG--~~vv~~L~~~~v~viD~Gt~g~~---l~~~l~~~d~vIiVDAv~~g~~pG~i   65 (140)
T cd06070          13 DGFG--SCLAEALEQCGAPVFDGGLDGFG---LLSHLENYDIVIFIDVAVIDEDVGVF   65 (140)
T ss_pred             CCHH--HHHHHHHHHCCCEEEEECCCHHH---HHHHHHCCCEEEEEEEECCCCCCCEE
T ss_conf             8689--99999998639859992585899---99998279989999511168998279


No 151
>PRK09213 purine operon repressor; Provisional
Probab=36.29  E-value=11  Score=18.86  Aligned_cols=10  Identities=50%  Similarity=0.876  Sum_probs=3.1

Q ss_pred             HCCCCEEEEE
Q ss_conf             4036728984
Q gi|254780659|r  189 ILDGGTGYIT  198 (274)
Q Consensus       189 ILp~GTayiT  198 (274)
                      |||||--|.|
T Consensus        97 iLPGGylYms  106 (274)
T PRK09213         97 ILPGGYLYLS  106 (274)
T ss_pred             CCCCCCEEHH
T ss_conf             7667402102


No 152
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme.  This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily.  This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=35.93  E-value=35  Score=15.52  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=16.9

Q ss_pred             HHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             988860998999917004788678999999998379989993
Q gi|254780659|r   24 RLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT   65 (274)
Q Consensus        24 ~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~   65 (274)
                      ++-.++++|.||+.        |+.++.++.|.++|+.++++
T Consensus        57 ~~l~~~gv~~vI~~--------~iG~~a~~~L~~~GI~v~~~   90 (103)
T cd00851          57 EFLADEGVDVVIVG--------GIGPRALNKLRNAGIKVYKG   90 (103)
T ss_pred             HHHHHCCCCEEEEC--------CCCHHHHHHHHHCCCEEEEE
T ss_conf             99986599899978--------75988999999889999996


No 153
>pfam10761 DUF2590 Protein of unknown function (DUF2590). This family of proteins has no known function.
Probab=35.84  E-value=17  Score=17.60  Aligned_cols=17  Identities=29%  Similarity=0.399  Sum_probs=12.8

Q ss_pred             CCHHHHCCCCEEEEECCC
Q ss_conf             654564036728984056
Q gi|254780659|r  184 TADAQILDGGTGYITDLG  201 (274)
Q Consensus       184 TaD~rILp~GTayiTDvG  201 (274)
                      -.|+||.| ||+.++...
T Consensus        65 E~D~RivP-GTv~i~e~~   81 (103)
T pfam10761        65 EDDVRLVP-GTVKITEES   81 (103)
T ss_pred             ECCCCCCC-CEEEEEECC
T ss_conf             03664168-648999625


No 154
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=35.58  E-value=36  Score=15.48  Aligned_cols=129  Identities=15%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCC----
Q ss_conf             9980898886099899991700478867899999999837998999342653022204754218938975007988----
Q gi|254780659|r   19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----   94 (274)
Q Consensus        19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~----   94 (274)
                      .+.+..|+++|.-++.|-      -|-=+|.+.+++..++|++.|-+=+   -..|+.++-.+..-..-|-=+.+.    
T Consensus        49 ~~~I~~l~~~~~~~~~iG------AGTVlt~e~~~~ai~aGA~FiVSP~---~~~~vi~~a~~~~i~~iPG~~TPsEi~~  119 (206)
T PRK09140         49 FDSIAALVKALGDDALIG------AGTVLSPEQVDRLADAGGRLIVTPN---IDPEVIRRAVAYGMTVMPGVATPTEAFA  119 (206)
T ss_pred             HHHHHHHHHHCCCCEEEE------EEECCCHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             999999999679865998------6204679999999985999999999---9899999999829965278599999999


Q ss_pred             CCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             87540799984899289999960000588332598999999986341368998899962576228999999760895779
Q gi|254780659|r   95 TPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASL  174 (274)
Q Consensus        95 ~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsa  174 (274)
                      +--.|+.+      .|+-=.+.+|-.|++ .+.-||-            .+.  -|+---  --+.-++--|.-.|-+..
T Consensus       120 A~~~Ga~~------vKlFPA~~~Gp~~ik-al~~p~P------------~~~--~~~ptG--GV~~~N~~~~l~aGa~av  176 (206)
T PRK09140        120 ALRAGADA------LKLFPASQLGPAGIK-ALRAVLP------------PDV--PVFAVG--GVTPENLAPYLAAGAAGF  176 (206)
T ss_pred             HHHCCCCE------EEECCHHCCCHHHHH-HHHCCCC------------CCC--EEEECC--CCCHHHHHHHHHCCCCEE
T ss_conf             99859871------565751105999999-9864389------------999--899537--988888999998699199


Q ss_pred             EEECC
Q ss_conf             98069
Q gi|254780659|r  175 VVGTH  179 (274)
Q Consensus       175 VvGTH  179 (274)
                      -+|+-
T Consensus       177 G~Gs~  181 (206)
T PRK09140        177 GLGSA  181 (206)
T ss_pred             EECHH
T ss_conf             96065


No 155
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=35.55  E-value=36  Score=15.48  Aligned_cols=202  Identities=16%  Similarity=0.175  Sum_probs=90.2

Q ss_pred             CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH--------------CCCCEEEE
Q ss_conf             926999-720276889999998089888609989999170047886789999999983--------------79989993
Q gi|254780659|r    1 MRLLFL-GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME--------------TGIDVITT   65 (274)
Q Consensus         1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~--------------~GvDviT~   65 (274)
                      ||||.- -|=+-.+|.+++.+.|.+   .+.+-.|--.-|.|+-|..||-..--++.+              .-+||+.+
T Consensus         1 M~ILlTNDDGi~a~Gi~~L~~~l~~---~~~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~~~~~~y~v~GTPaDCV~l   77 (255)
T PRK13935          1 MNILVTNDDGVTSKGILCLARYLSK---KHEVFVVAPEKEQSATGHAITLRVPLWAKKVDINERFEIYAVTGTPADCVKI   77 (255)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHHH
T ss_conf             9699970799897789999999852---9939999279987678656424887047874048884189936984899999


Q ss_pred             CHHHHCCCCHHHHHHHCCC-EEEECCCCCCCCCCCEEEEECC----------CCC-EEEEEEEEHHHCCCCCCCCHHHHH
Q ss_conf             4265302220475421893-8975007988875407999848----------992-899999600005883325989999
Q gi|254780659|r   66 GNHVWDKREALVFSQRHCK-FLRPANYPPNTPGNGSGLYCAK----------NGS-NVLVANIMGRVFMNPLLDDPFRTA  133 (274)
Q Consensus        66 GNH~wd~kei~~~i~~~~~-ilRP~N~p~~~PG~G~~i~~~~----------~g~-ki~Vinl~Gr~fM~~~~d~PF~~~  133 (274)
                      |=|.        ++++.|. +|-=.|+-... |.-  ++-+-          .|. -||+-. .  .+-++..+.-=+.+
T Consensus        78 al~~--------l~~~~pDLVvSGIN~G~Nl-G~d--v~YSGTVgAA~Eg~l~GipsIAvS~-~--~~~~~~~~~a~~~~  143 (255)
T PRK13935         78 GYDV--------IMKKKPDLVISGINRGPNL-GTD--VLYSGTVSGALEGAIAGVPSIAISS-A--NFENPDYETAARFL  143 (255)
T ss_pred             HHHH--------HCCCCCCEEEECCCCCCCC-CCC--EEECCHHHHHHHHHHCCCCEEEEEC-C--CCCCCCHHHHHHHH
T ss_conf             9864--------0589998899687488777-713--7720036778989754998699965-6--67887878999999


Q ss_pred             HHHHHHCCCCC--CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCC
Q ss_conf             99986341368--9988999625762289999997608957799806976246545640367289840560137121035
Q gi|254780659|r  134 DKILATCPLKE--QADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIG  211 (274)
Q Consensus       134 d~~l~~~~~~~--~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG  211 (274)
                      -++++++..+.  ...+.=|-|-+....|       +.|---+-.|....-..-+.|+=|.|--|--=.|-.-..++--+
T Consensus       144 ~~ii~~~~~~~~p~~~~lNVN~P~~~~~~-------ikG~k~t~~g~r~~~~~~~~~~dp~g~~yyw~~g~~~~~~~~~~  216 (255)
T PRK13935        144 LNFLEEFDFSLLPPFTALNINVPSVPYGE-------IKGWKLTRQSRRRYNDYFEERVDPFGNKYYWMMGEIIEDDPDDD  216 (255)
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCC-------CCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf             99999998617984506864279997235-------88549966665336765057357999878986477677789989


Q ss_pred             CCHHHHHHHHHHCCC
Q ss_conf             474678988851688
Q gi|254780659|r  212 LDKEEPINRFITQIP  226 (274)
Q Consensus       212 ~~~~~~i~rf~t~~p  226 (274)
                      -|....-+.|.+=.|
T Consensus       217 tD~~al~~gyISITP  231 (255)
T PRK13935        217 ADYKAVREGYVSVTP  231 (255)
T ss_pred             CHHHHHHCCEEEEEE
T ss_conf             379999799099832


No 156
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=35.19  E-value=36  Score=15.44  Aligned_cols=15  Identities=27%  Similarity=0.375  Sum_probs=5.4

Q ss_pred             CHHHHHHHHHCCCCE
Q ss_conf             999999998379989
Q gi|254780659|r   48 TEKIFCEMMETGIDV   62 (274)
Q Consensus        48 t~~~~~~l~~~GvDv   62 (274)
                      |++.+++|.++|+|.
T Consensus       150 T~e~~~~L~~~Gad~  164 (326)
T PRK05458        150 TPEAVRELENAGADA  164 (326)
T ss_pred             CHHHHHHHHHCCCCE
T ss_conf             899999999749999


No 157
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain.  DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=35.16  E-value=37  Score=15.44  Aligned_cols=52  Identities=21%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE---CCEECCCCCCCCHH----HHHHHHHCCCCEEEEC
Q ss_conf             89999998089888609989999---17004788678999----9999983799899934
Q gi|254780659|r   14 GRSIVYEMLPRLIRDFQLDFVIA---NGENSAGGFGITEK----IFCEMMETGIDVITTG   66 (274)
Q Consensus        14 Gr~~v~~~Lp~l~~~~~~DfvIa---NgENaa~G~Git~~----~~~~l~~~GvDviT~G   66 (274)
                      -.+.+.+.+..+|++...||+|.   |++.-..| |+|.+    ++++|-++|+|.+-.+
T Consensus       186 R~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~~~-G~~~~e~~~~~~~l~~~GvD~i~vs  244 (353)
T cd02930         186 RMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG-GSTWEEVVALAKALEAAGADILNTG  244 (353)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             8799999999999970998749997360126899-9899999999999998199999963


No 158
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=34.91  E-value=37  Score=15.41  Aligned_cols=150  Identities=16%  Similarity=0.194  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCC-CHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf             9980898886099899991700478867899999999837998999342653022-204754218938975007988875
Q gi|254780659|r   19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKR-EALVFSQRHCKFLRPANYPPNTPG   97 (274)
Q Consensus        19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~k-ei~~~i~~~~~ilRP~N~p~~~PG   97 (274)
                      .+.+.++|++++..+++----|.---+|+ .+-++++.++|+|-+-.=+=-|+.. ++.+...+..-=+-++= ++.+|-
T Consensus        65 ~~~~~~~r~~~~~pivlM~Y~N~i~~~G~-e~F~~~~~~~Gv~GviipDLP~ee~~~~~~~~~~~~i~~I~lv-sPtt~~  142 (242)
T cd04724          65 LELVKEIRKKNTIPIVLMGYYNPILQYGL-ERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLV-APTTPD  142 (242)
T ss_pred             HHHHHHHHHCCCCCEEEEEECHHHHHHCH-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCH
T ss_conf             99999987347988899984457665289-9999999975997587069995784689999986598388996-898878


Q ss_pred             CCE-EEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf             407-9998489928999996000058833259899999998634136899889996257622899999976089577998
Q gi|254780659|r   98 NGS-GLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV  176 (274)
Q Consensus        98 ~G~-~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVv  176 (274)
                      .-. .+.....| =+-++..+|.+..+..+  + ..+.+.+++++.-.+.+ +.|-|-=-....-..+.-+.||   +|+
T Consensus       143 ~ri~~i~~~s~g-fiY~vs~~GvTG~~~~~--~-~~~~~~i~~ik~~t~~P-v~vGFGI~~~e~v~~~~~~aDG---vIV  214 (242)
T cd04724         143 ERIKKIAELASG-FIYYVSRTGVTGARTEL--P-DDLKELIKRIRKYTDLP-IAVGFGISTPEQAAEVAKYADG---VIV  214 (242)
T ss_pred             HHHHHHHHHCCC-EEEEEECCCCCCCCCCC--H-HHHHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHCCE---EEE
T ss_conf             999999974798-49998577777877556--4-99999999998716897-4874387999999999965999---998


Q ss_pred             EC
Q ss_conf             06
Q gi|254780659|r  177 GT  178 (274)
Q Consensus       177 GT  178 (274)
                      ||
T Consensus       215 GS  216 (242)
T cd04724         215 GS  216 (242)
T ss_pred             CH
T ss_conf             78


No 159
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=34.84  E-value=13  Score=18.39  Aligned_cols=37  Identities=8%  Similarity=0.141  Sum_probs=20.0

Q ss_pred             CCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             8875407999848992899999600005883325989999999863413
Q gi|254780659|r   94 NTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPL  142 (274)
Q Consensus        94 ~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~  142 (274)
                      ..+..||.++++..|       |+|.     ...+-|+.+.+.+++.+-
T Consensus        69 e~kr~~~iviTSDrG-------LcG~-----~Nsni~k~~~~~i~~~~~  105 (287)
T COG0224          69 EVKRVLYIVITSDRG-------LCGG-----FNSNIFKKVENLIKELKN  105 (287)
T ss_pred             CCCCEEEEEEECCCC-------HHHH-----HHHHHHHHHHHHHHHHHC
T ss_conf             788269999956853-------0100-----029999999999975032


No 160
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950    This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=34.56  E-value=37  Score=15.38  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHH-CCCCEEEECCEECCCCCCCCHHHHHHHHHCCCC-----EEEECHHHHCCCCHHHHHHHCC
Q ss_conf             99980898886-099899991700478867899999999837998-----9993426530222047542189
Q gi|254780659|r   18 VYEMLPRLIRD-FQLDFVIANGENSAGGFGITEKIFCEMMETGID-----VITTGNHVWDKREALVFSQRHC   83 (274)
Q Consensus        18 v~~~Lp~l~~~-~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvD-----viT~GNH~wd~kei~~~i~~~~   83 (274)
                      +.+.|-+||+. |++-.|         =-|.+.+.-+.|..+||+     |||++++-|.|+--.=|+.-..
T Consensus       118 ~~~~L~~LR~~Gy~Lg~i---------T~G~~~~Q~eKl~~lg~~~fFD~V~~s~e~g~~KPhP~IF~~Al~  180 (244)
T TIGR02253       118 VVDTLMELRESGYRLGLI---------TDGLTVKQWEKLERLGIRDFFDAVITSEELGVEKPHPKIFYAALR  180 (244)
T ss_pred             HHHHHHHHHHCCCEEEEE---------ECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             889999998647788998---------668778999999982775357705722444776978589999999


No 161
>PRK10490 sensor protein KdpD; Provisional
Probab=34.48  E-value=34  Score=15.66  Aligned_cols=51  Identities=24%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CCCCEEEECC---EECCCCCCC-CHHHHHHHHHCCCCEEEECH--HHHCCCCHHHHH
Q ss_conf             0998999917---004788678-99999999837998999342--653022204754
Q gi|254780659|r   29 FQLDFVIANG---ENSAGGFGI-TEKIFCEMMETGIDVITTGN--HVWDKREALVFS   79 (274)
Q Consensus        29 ~~~DfvIaNg---ENaa~G~Gi-t~~~~~~l~~~GvDviT~GN--H~wd~kei~~~i   79 (274)
                      .+|+.+++--   -|+.|-+-- -.+..+||+++||||+|+=|  |+=.-.|++.-|
T Consensus       101 r~P~~~lvDelahtn~pgsrh~kR~qdv~ell~aGi~V~tt~nvqhlesl~d~v~~i  157 (895)
T PRK10490        101 RRPALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGV  157 (895)
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             399889973345669998877640764999997798385510156566567899986


No 162
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323   These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=33.91  E-value=38  Score=15.31  Aligned_cols=38  Identities=21%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             88609989999170047886789999999983799899
Q gi|254780659|r   26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI   63 (274)
Q Consensus        26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi   63 (274)
                      .+-|++|||++-=|=+-+|+=-=-..++...++||+=+
T Consensus       136 ~~GY~pD~vVatDdvpq~GRP~P~~alkNvieLGv~dv  173 (199)
T TIGR01422       136 LQGYKPDFVVATDDVPQAGRPYPFMALKNVIELGVDDV  173 (199)
T ss_pred             HCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             47897664246622467889747899998987075221


No 163
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.59  E-value=39  Score=15.28  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=32.4

Q ss_pred             HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECC
Q ss_conf             999999983799899934265302220475421893897500
Q gi|254780659|r   49 EKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPAN   90 (274)
Q Consensus        49 ~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N   90 (274)
                      .+..+++++.||+++-.=....+.+|......+-..+.+..|
T Consensus        23 ~~~~~~~l~~Gv~~vQlR~K~~~~~~~~~~a~~l~~i~~~~~   64 (210)
T PRK00043         23 LEVVEAALAGGVTLVQLREKGADARERLELARALKALCRRYG   64 (210)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             999999998699999992699899999999999999999809


No 164
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=33.59  E-value=39  Score=15.28  Aligned_cols=171  Identities=16%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             CEEEEEEECCC----HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH--CCC--CEEEECHHHHCC
Q ss_conf             92699972027----6889999998089888609989999170047886789999999983--799--899934265302
Q gi|254780659|r    1 MRLLFLGDIVG----KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME--TGI--DVITTGNHVWDK   72 (274)
Q Consensus         1 MkiLfiGDIvG----~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~--~Gv--DviT~GNH~wd~   72 (274)
                      |||.-|-|+=-    .-....+...++.++ ...+|++|+.|.=+-.|.-.....+.+++.  ..-  -.+..|||--.-
T Consensus         1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~-~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~   79 (301)
T COG1409           1 MRIAHISDLHLGALGVDSEELLEALLAAIE-QLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARV   79 (301)
T ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf             968998168877455655899999999736-6799989988746566665899999999974677887586389854544


Q ss_pred             CCHHHHHHHCCCEEEECCCCCCCCC-CCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             2204754218938975007988875-407999848992899999600005883325989999999863413689988999
Q gi|254780659|r   73 REALVFSQRHCKFLRPANYPPNTPG-NGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVF  151 (274)
Q Consensus        73 kei~~~i~~~~~ilRP~N~p~~~PG-~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~V  151 (274)
                      ..-..+. +..........  .... .++.+....... ..  .-.|+     .-+.-|.-+++.+++.+..  ....+|
T Consensus        80 ~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~d~~~-~~--~~~G~-----~~~~q~~~l~~~l~~~~~~--~~~~~v  146 (301)
T COG1409          80 VNGEAFS-DQFFNRYAVLV--GACSSGGWRVIGLDSSV-PG--VPLGR-----LGAEQLDWLEEALAAAPER--AKDTVV  146 (301)
T ss_pred             CCCHHHH-HHCCCCCHHHC--CCCCCCCEEEEEECCCC-CC--CCCCE-----ECHHHHHHHHHHHHHHHCC--CCCEEE
T ss_conf             4432231-10145530101--02237866999731565-67--76877-----3588899999997752012--564069


Q ss_pred             ECCCC--------------CHHHHHHHHHHHCCC-EEEEEECCCCCCCC
Q ss_conf             62576--------------228999999760895-77998069762465
Q gi|254780659|r  152 DFHAE--------------TTSEKQCFAHFVDSR-ASLVVGTHTHIPTA  185 (274)
Q Consensus       152 DfHaE--------------aTSEK~A~g~~lDGr-VsaVvGTHTHV~Ta  185 (274)
                      .+|=+              ..+....-..-.-++ |.+|+--|.|.+..
T Consensus       147 ~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~  195 (301)
T COG1409         147 VLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQ  195 (301)
T ss_pred             EEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf             9844787777764013443243344567764478414999697445541


No 165
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II; InterPro: IPR011278   Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA).    Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH .   This entry represents type I homodimeric citrate synthase enzymes (predominantly from Gram-positive bacteria and archaea), as well as 2-methylcitrate synthase; some enzyme in this entry may be bifunctional citrate synthase/2-methylcitrate synthase enzymes. Members of this family appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesise 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme . 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive . ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process, 0005737 cytoplasm.
Probab=33.40  E-value=14  Score=18.07  Aligned_cols=15  Identities=13%  Similarity=0.363  Sum_probs=8.8

Q ss_pred             HHHHHHHCCCEEEEC
Q ss_conf             047542189389750
Q gi|254780659|r   75 ALVFSQRHCKFLRPA   89 (274)
Q Consensus        75 i~~~i~~~~~ilRP~   89 (274)
                      |+++.++++|||||-
T Consensus       355 ~~Eq~~e~NRLIRPr  369 (386)
T TIGR01800       355 IIEQYEENNRLIRPR  369 (386)
T ss_pred             HHHHHHHCCCCCCCC
T ss_conf             454132056311775


No 166
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=33.24  E-value=39  Score=15.24  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             6999720276889999998089888609989999170047886789999999983799899934265
Q gi|254780659|r    3 LLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHV   69 (274)
Q Consensus         3 iLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~   69 (274)
                      +|+|-|--|---=....+.++.||+++.+|.-|-=  -+....|+..-.|-+-.++|||+|-+.-..
T Consensus       171 ~i~IKDmAGll~P~~a~~LV~~lk~~~g~d~pI~~--HtH~T~G~~~~~~l~AieAGvDivD~A~~~  235 (499)
T PRK12330        171 SICIKDMAALLKPQPAYDLVKGIKEACGPDTRVHV--HAHATTGVTLVSLMKAIEAGVDVVDTAISS  235 (499)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEE--ECCCCCCHHHHHHHHHHHCCCCEECCCCCC
T ss_conf             89984753467889999999999986389983798--517887469999999998499887244543


No 167
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.22  E-value=33  Score=15.72  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=32.6

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH---CCCEEEECCCCC
Q ss_conf             47886789999999983799899934265302220475421---893897500798
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR---HCKFLRPANYPP   93 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~---~~~ilRP~N~p~   93 (274)
                      +++.+||...+++.|.+.|.+|+-.+..-=..++..+.+++   ..-+.-+++...
T Consensus        14 aag~rGIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~   69 (256)
T PRK08594         14 VANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELAETLEQQESLVLPCDVTS   69 (256)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99996399999999998799999974880669999999987079947999913899


No 168
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.19  E-value=39  Score=15.24  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHH-----HHHCCCCEEEECHHHHCCCCHH
Q ss_conf             99720276889999998089888609989999170047886789999999-----9837998999342653022204
Q gi|254780659|r    5 FLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCE-----MMETGIDVITTGNHVWDKREAL   76 (274)
Q Consensus         5 fiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~-----l~~~GvDviT~GNH~wd~kei~   76 (274)
                      |=.-+.|+-..+.+++.+.+--+++++|.+|+-.--+|.   |-.+.-..     .+...++||-.-=..|.++|..
T Consensus        60 ~~~~~L~~gt~e~v~~~i~~~~~~~~P~~ilv~~scTs~---liQed~g~la~~a~~~~~~~vi~~~~~~y~~~E~~  133 (510)
T CHL00076         60 VDRHVLARGSQEKVVDNITRKDKEEQPDLILLTPTCTSS---ILQEDLQNFVDRASMDSDSDVILADVNHYRVNELQ  133 (510)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHH---HHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHH
T ss_conf             001223677479999999998523088469975741188---76433455543113578987454567622466777


No 169
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.15  E-value=39  Score=15.23  Aligned_cols=12  Identities=0%  Similarity=0.130  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHCC
Q ss_conf             467898885168
Q gi|254780659|r  214 KEEPINRFITQI  225 (274)
Q Consensus       214 ~~~~i~rf~t~~  225 (274)
                      .+.++++.+...
T Consensus       174 i~~av~~~r~~~  185 (277)
T PRK08072        174 ITKAVTSVREKL  185 (277)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999865


No 170
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=32.87  E-value=17  Score=17.59  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=14.9

Q ss_pred             CCEEEECHHHHCCCCHHHHHH
Q ss_conf             989993426530222047542
Q gi|254780659|r   60 IDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus        60 vDviT~GNH~wd~kei~~~i~   80 (274)
                      -++++.|-|.+=+++.++.+.
T Consensus        28 N~~~S~G~~~~Wr~~~v~~l~   48 (239)
T PRK00216         28 NDLLSFGLHRVWRRKTIKWLG   48 (239)
T ss_pred             HHHHCCCHHHHHHHHHHHHCC
T ss_conf             667507519999999998627


No 171
>pfam08267 Meth_synt_1 Cobalamin-independent synthase, N-terminal domain. The N-terminal domain and C-terminal domains of cobalamin-independent synthases together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilize a loop from the C-terminal domain.
Probab=32.64  E-value=25  Score=16.49  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=25.5

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHH-CC
Q ss_conf             478867899999999837998999342653-02
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVW-DK   72 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~w-d~   72 (274)
                      .+.+.-+..++.+...++|+|.|+.|+-+| |+
T Consensus        34 ~~~a~~lr~~~w~~q~~aGid~Ip~~dFS~YD~   66 (310)
T pfam08267        34 LEVAKELRLKHWKLQKEAGIDLIPVGDFSWYDH   66 (310)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf             999999999999999986998551387515899


No 172
>KOG3669 consensus
Probab=32.48  E-value=40  Score=15.16  Aligned_cols=141  Identities=18%  Similarity=0.169  Sum_probs=77.4

Q ss_pred             HHHHCCCCEEEE------CHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCC
Q ss_conf             998379989993------42653022204754218938975007988875407999848992899999600005883325
Q gi|254780659|r   54 EMMETGIDVITT------GNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLD  127 (274)
Q Consensus        54 ~l~~~GvDviT~------GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d  127 (274)
                      .|-..|-|+|-+      |.--|-.-+.-......---+-.     +..+.-+.  +..+|.++.|-.       +|  +
T Consensus       477 ~l~~~g~d~i~~~~~~~~g~~~Wt~~~lw~c~A~~~~svdc-----gn~~~w~~--~~~sg~~~~v~~-------~p--l  540 (705)
T KOG3669         477 ALDSLGQDFIRTLSKSCPGGMHWTRLDLWQCGAVKLTSVDC-----GNQHIWAC--DSRSGVYFRVGT-------QP--L  540 (705)
T ss_pred             HHHHHCCEEEECCCCCCCCCCEEEECCHHHHHHHHEEEECC-----CCCCCEEE--ECCCCCEEEECC-------CC--C
T ss_conf             67651311786036789776205652355541422367503-----67640676--136871697127-------76--8


Q ss_pred             CHHHHHHH-HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH
Q ss_conf             98999999-98634136899889996257622899999976089577998069762465456403672898405601371
Q gi|254780659|r  128 DPFRTADK-ILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY  206 (274)
Q Consensus       128 ~PF~~~d~-~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~  206 (274)
                      +|-...++ ++++.++...+.+ +|.||.   |-|-+|+||+|.|      -.-|+-|.=....+=|+|..+|-|.--..
T Consensus       541 ~~~~ml~~~~~k~~~~Q~~avf-~vs~~s---s~k~~~aw~~d~~------p~~~~~~~ite~~wv~saw~~~~~~~~~s  610 (705)
T KOG3669         541 NPSLMLPAWIMKEPPVQPAAVF-LVSVHS---SPKDQMAWVLDSR------PNVHVRTGITEEMWVGSAWEHVPGLQACS  610 (705)
T ss_pred             CHHHCCHHHHHHCCCCCCCEEE-EEEECC---CCCCCCEEEECCC------CCCCCCCCCCCCEECCCCCCCCCCHHHHH
T ss_conf             7222116677533466520499-999615---8665111000158------99754565221056033124577757752


Q ss_pred             HHCCC-----CCHHHHHHH
Q ss_conf             21035-----474678988
Q gi|254780659|r  207 NSSIG-----LDKEEPINR  220 (274)
Q Consensus       207 ~SVIG-----~~~~~~i~r  220 (274)
                      .+.=+     ..|+....|
T Consensus       611 ~~~d~~t~~~~~p~G~a~r  629 (705)
T KOG3669         611 LALDTRTVWARCPNGDAAR  629 (705)
T ss_pred             CCCCCEEEEEECCCCHHHH
T ss_conf             1567416998678834664


No 173
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=32.04  E-value=41  Score=15.12  Aligned_cols=56  Identities=23%  Similarity=0.181  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHCCCC-EEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHC-CCCHHHHHHH
Q ss_conf             999808988860998-999917004788678999999998379989993426530-2220475421
Q gi|254780659|r   18 VYEMLPRLIRDFQLD-FVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD-KREALVFSQR   81 (274)
Q Consensus        18 v~~~Lp~l~~~~~~D-fvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd-~kei~~~i~~   81 (274)
                      +.+.+..+|+..... .|.+-.||        -+.+.+..++|+|+|-+-|-.-+ =++...++.+
T Consensus        66 ~~~~i~~~~~~~~~~~~I~VEv~t--------l~e~~~a~~~~~d~I~LDn~spe~l~~~v~~l~~  123 (169)
T pfam01729        66 ITEAVRRAREVAPFAVKIEVEVEN--------LEELEEALEAGADIIMLDNFSPEEVREAVEELDE  123 (169)
T ss_pred             HHHHHHHHHHHCCCCCEEEEEEEH--------HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             999999999967999709999601--------9989999846998999779999999999999997


No 174
>TIGR02683 upstrm_HI1419 probable addiction module killer protein; InterPro: IPR014056   Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family IPR001387 from INTERPRO. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module..
Probab=31.97  E-value=38  Score=15.33  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=16.3

Q ss_pred             CCCCEEEEECCCCCEEEEEEEEH
Q ss_conf             75407999848992899999600
Q gi|254780659|r   96 PGNGSGLYCAKNGSNVLVANIMG  118 (274)
Q Consensus        96 PG~G~~i~~~~~g~ki~Vinl~G  118 (274)
                      -|.||+||-...|. ..|+=|.|
T Consensus        54 ~GpGYRvYf~~~G~-~~ilLLcG   75 (95)
T TIGR02683        54 YGPGYRVYFTQRGK-VIILLLCG   75 (95)
T ss_pred             CCCCEEEEEEEECC-EEEEEECC
T ss_conf             69964688764488-88998518


No 175
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=31.90  E-value=41  Score=15.10  Aligned_cols=48  Identities=10%  Similarity=0.245  Sum_probs=25.5

Q ss_pred             HHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             898886099899991700478867899999999837998999342653022
Q gi|254780659|r   23 PRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKR   73 (274)
Q Consensus        23 p~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~k   73 (274)
                      ...-.+.+||+|++-|.-.+-   +...++....+.-+==|-.|..+||..
T Consensus        81 ~~~l~~~kPD~VlV~GDr~e~---la~Alaa~~~~Ipi~HiegG~rs~~~~  128 (363)
T cd03786          81 EAVLLEEKPDLVLVLGDTNET---LAAALAAFKLGIPVAHVEAGLRSFDRG  128 (363)
T ss_pred             HHHHHHHCCCEEEEECCCCHH---HHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf             999997299999994888428---799999998198189962643347679


No 176
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=31.82  E-value=38  Score=15.30  Aligned_cols=59  Identities=20%  Similarity=0.324  Sum_probs=41.0

Q ss_pred             EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCE-----------ECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCH
Q ss_conf             720276889999998089888609989999170-----------047886789999999983799899934265302220
Q gi|254780659|r    7 GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGE-----------NSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREA   75 (274)
Q Consensus         7 GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgE-----------Naa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei   75 (274)
                      +-.-|+...+.++..+.+--++++||.+|+-.-           |.+.+.|+           .++||-..=..|..+|.
T Consensus        62 ~rdLgr~t~el~~~~~~~a~~~~~P~~ivv~~SCta~liQedp~~la~~~~l-----------~~~vi~~e~~~y~~~E~  130 (524)
T PRK02910         62 ARDLGRGTAELVKDTIRRADERFQPDLIVVGPSCTAELLQEDPGGLAKGAGL-----------PIPVLVLELNAYRVKEN  130 (524)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC-----------CCCEEECCCCCCCHHHH
T ss_conf             4440565078889999998544298579985400698875461122334699-----------98644555772105678


Q ss_pred             H
Q ss_conf             4
Q gi|254780659|r   76 L   76 (274)
Q Consensus        76 ~   76 (274)
                      .
T Consensus       131 ~  131 (524)
T PRK02910        131 W  131 (524)
T ss_pred             H
T ss_conf             8


No 177
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=31.41  E-value=42  Score=15.05  Aligned_cols=16  Identities=13%  Similarity=0.274  Sum_probs=8.4

Q ss_pred             CCHHHHHHHHHHCCCC
Q ss_conf             4746789888516886
Q gi|254780659|r  212 LDKEEPINRFITQIPR  227 (274)
Q Consensus       212 ~~~~~~i~rf~t~~p~  227 (274)
                      .+....+.+++...|.
T Consensus       168 ~~~~~~v~~~k~~~~~  183 (272)
T cd01573         168 PEPLKALARLRATAPE  183 (272)
T ss_pred             CHHHHHHHHHHHHCCC
T ss_conf             3299999999862999


No 178
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.41  E-value=42  Score=15.05  Aligned_cols=126  Identities=13%  Similarity=0.173  Sum_probs=66.5

Q ss_pred             HHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCC----C
Q ss_conf             980898886099899991700478867899999999837998999342653022204754218938975007988----8
Q gi|254780659|r   20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----T   95 (274)
Q Consensus        20 ~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~----~   95 (274)
                      +.+.+++++| +|++|-      -|-=+|.+.+++..++|++.|-+=+   -.+|+..+-.+..-..-|-=+.+.    +
T Consensus        53 ~~I~~l~~~~-p~~~iG------aGTV~~~e~~~~a~~aGA~FiVSP~---~~~~vi~~a~~~~i~~iPGv~TpsEi~~A  122 (210)
T PRK07455         53 ELISQLREKL-PECIIG------TGTLLTLEDLEEAIAAGAQFCFTPH---VDLELIQAAVAADIPIIPGALTPTEIVTA  122 (210)
T ss_pred             HHHHHHHHHC-CCCEEE------EEECCCHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCCEECCCCCHHHHHHH
T ss_conf             9999999878-996898------8818789999999986999998688---88999999998299765886999999999


Q ss_pred             CCCCEEEEECCCCCEEEEEEEE-HHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             7540799984899289999960-000588332598999999986341368998899962576228999999760895779
Q gi|254780659|r   96 PGNGSGLYCAKNGSNVLVANIM-GRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASL  174 (274)
Q Consensus        96 PG~G~~i~~~~~g~ki~Vinl~-Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsa  174 (274)
                      --.|+.+      .|+-=.+.+ |--|++ .+.-||..+             +  |+=- +-- +..++-.|.-.|-+.+
T Consensus       123 ~~~G~~~------vKlFPA~~~GG~~ylk-al~~p~p~i-------------~--~~pt-GGV-~~~n~~~yl~ag~~~v  178 (210)
T PRK07455        123 WQAGASC------VKVFPVQAVGGADYIK-SLQGPLGHI-------------P--LIPT-GGV-TLENAQAFIQAGAIAV  178 (210)
T ss_pred             HHCCCCE------EEECCCHHCCCHHHHH-HHHCCCCCC-------------C--EEEC-CCC-CHHHHHHHHHCCCEEE
T ss_conf             9869984------7750513206799999-986548999-------------3--8878-998-9888999996899799


Q ss_pred             EEECC
Q ss_conf             98069
Q gi|254780659|r  175 VVGTH  179 (274)
Q Consensus       175 VvGTH  179 (274)
                      .+|+-
T Consensus       179 g~Gs~  183 (210)
T PRK07455        179 GLSSQ  183 (210)
T ss_pred             EECHH
T ss_conf             98846


No 179
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=31.30  E-value=35  Score=15.54  Aligned_cols=136  Identities=21%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             CCCEEEECC---EECCCCCCC-CHHHHHHHHHCCCCEEEECH--HHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEE
Q ss_conf             998999917---004788678-99999999837998999342--653022204754218938975007988875407999
Q gi|254780659|r   30 QLDFVIANG---ENSAGGFGI-TEKIFCEMMETGIDVITTGN--HVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLY  103 (274)
Q Consensus        30 ~~DfvIaNg---ENaa~G~Gi-t~~~~~~l~~~GvDviT~GN--H~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~  103 (274)
                      +|.+|.+.-   -|+.+-+-- -.+..+||+++|+||.|+=|  |.=.=.|++.-|-.   +---    +..|-+   +|
T Consensus       100 ~P~lvLvDELAHTNa~gsrh~KR~qDiEelL~aGIDV~TT~NvQHlESLnDvV~~iTg---v~Vr----E~VPD~---v~  169 (890)
T COG2205         100 RPALVLVDELAHTNAPGSRHPKRWQDIEELLAAGIDVYTTVNVQHLESLNDVVAGITG---VRVR----ETVPDR---VF  169 (890)
T ss_pred             CCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCC---EEEE----EECCHH---HH
T ss_conf             9978985143304898888830354099999769806774005557678889986367---0774----027806---75


Q ss_pred             ECCCCCEEEEEEE----------EHHHCCC----CCCCCHHH--------------HHHHHHHHCC---C-------CCC
Q ss_conf             8489928999996----------0000588----33259899--------------9999986341---3-------689
Q gi|254780659|r  104 CAKNGSNVLVANI----------MGRVFMN----PLLDDPFR--------------TADKILATCP---L-------KEQ  145 (274)
Q Consensus       104 ~~~~g~ki~Vinl----------~Gr~fM~----~~~d~PF~--------------~~d~~l~~~~---~-------~~~  145 (274)
                      ...+  .+-++-+          -|.++..    ..++|-|+              ++|++=++..   .       +.-
T Consensus       170 d~AD--~v~lVDi~P~~L~~RL~~GKVY~~~~a~~A~~nFF~~~NL~aLRElALRr~AdrVd~~~~~~~~~~~~~~~~~~  247 (890)
T COG2205         170 DEAD--EVELVDIPPDDLRERLKEGKVYAPEQAERALENFFRKGNLTALRELALRRTADRVDDQLRAYRRHKGIEGVWAA  247 (890)
T ss_pred             CCCC--EEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             6457--17996188799999997588237789999999763203079999999999999886889987632455465566


Q ss_pred             CCEEEEECCCCCHHHHH-----HHHHHHCCCEEEEEE
Q ss_conf             98899962576228999-----999760895779980
Q gi|254780659|r  146 ADVIVFDFHAETTSEKQ-----CFAHFVDSRASLVVG  177 (274)
Q Consensus       146 ~~~i~VDfHaEaTSEK~-----A~g~~lDGrVsaVvG  177 (274)
                      .+-|+|-+-+...|||.     -++..+.++-+||+=
T Consensus       248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v  284 (890)
T COG2205         248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYV  284 (890)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             5618999789986389999999999972897699998


No 180
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.20  E-value=42  Score=15.03  Aligned_cols=161  Identities=19%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEC---CEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCE
Q ss_conf             02768899999980898886099899991---700478867899999999837998999342653022204754218938
Q gi|254780659|r    9 IVGKTGRSIVYEMLPRLIRDFQLDFVIAN---GENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKF   85 (274)
Q Consensus         9 IvG~~Gr~~v~~~Lp~l~~~~~~DfvIaN---gENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~i   85 (274)
                      ..|-|..+.-.+.|..|. +. +|++=.-   .+=.|.|-=| ++..++-++.|.+       .      ..+++.    
T Consensus        12 taG~P~~e~s~~~l~~l~-~~-aDiiElGiPfSDPvADGpvI-q~A~~~Al~~g~~-------~------~~i~~~----   71 (247)
T PRK13125         12 TAGWPNAETFLEAIDGLV-GL-VDFLELGIPPKNPKYDGPVI-RKAHREVSYWGLD-------Y------WSLLEE----   71 (247)
T ss_pred             ECCCCCHHHHHHHHHHHH-HC-CCEEEECCCCCCCCCCHHHH-HHHHHHHHHCCCC-------H------HHHHHH----
T ss_conf             183799899999999986-47-99999799889876660999-9999999876998-------9------999998----


Q ss_pred             EEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHH-HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHH
Q ss_conf             97500798887540799984899289999960000588332598999-999986341368998-8999625762289999
Q gi|254780659|r   86 LRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRT-ADKILATCPLKEQAD-VIVFDFHAETTSEKQC  163 (274)
Q Consensus        86 lRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~-~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A  163 (274)
                      +|-                 +...++        ++|. ++ |||.. .++++++++. ...| +|++|.--|...|..-
T Consensus        72 ~r~-----------------~~~~pi--------vlM~-Y~-N~~~~g~e~F~~~~~~-~GvdGvIipDLP~e~~ee~~~  123 (247)
T PRK13125         72 VRK-----------------KVGVPT--------YIMT-YL-EDYVGSLDDLLNTAKE-VGARGVLFPDLLIDFPDELEK  123 (247)
T ss_pred             HCC-----------------CCCCCE--------EEHH-HH-HHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHHHHH
T ss_conf             505-----------------689988--------9729-88-9999769999999998-599758833888754678999


Q ss_pred             HHHHHC--CCEEEEEECCCCCCCCHHHHC-----CCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHH
Q ss_conf             997608--957799806976246545640-----367289840560137121035474678988851
Q gi|254780659|r  164 FAHFVD--SRASLVVGTHTHIPTADAQIL-----DGGTGYITDLGMCGDYNSSIGLDKEEPINRFIT  223 (274)
Q Consensus       164 ~g~~lD--GrVsaVvGTHTHV~TaD~rIL-----p~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t  223 (274)
                      +.-.+.  |-..--+=+-|   |.++||-     ..|=-|++=.|-||..   .-.+.+..+++.+.
T Consensus       124 ~~~~~~~~gl~~I~lvsPt---t~~~ri~~i~~~s~gFvY~~~~gvTG~~---~~~~~~~~i~~ik~  184 (247)
T PRK13125        124 YVELIRRYGLAPVFFTSPK---FPDRLIRRLSKLSPLFIYLGLYPATGVE---LPVYVERNIKRVRE  184 (247)
T ss_pred             HHHHHHHCCCCEEEEECCC---CCHHHHHHHHHHCCCEEEEEEECCCCCC---CCCCHHHHHHHHHH
T ss_conf             9999997698469995799---8199999999868977999944367887---73259999999998


No 181
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=30.75  E-value=43  Score=14.98  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             EEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE-ECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC---CH
Q ss_conf             99999600005883325989999999863413689988999-625762289999997608957799806976246---54
Q gi|254780659|r  111 VLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVF-DFHAETTSEKQCFAHFVDSRASLVVGTHTHIPT---AD  186 (274)
Q Consensus       111 i~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~V-DfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~T---aD  186 (274)
                      +.+.++-+  .+...+|+|-.    .|+++   .++|+++. -.|-..|.|---.+.- .|--+.+++.++--+.   =.
T Consensus        24 v~~~~~pe--~l~e~Ie~pee----~Lp~~---~~~Dl~i~y~lhPDl~~~l~~~~~e-~g~kalIvp~~~~~g~~~~lk   93 (215)
T pfam02593        24 VIVLEYPE--ELPEFIEDPEE----YLPEI---PEADLVIAYGLHPDLTLELAEIAAE-TGIKALIVPAEAPKGLRKGLK   93 (215)
T ss_pred             EEEEECCC--CCCCCCCCHHH----HCCCC---CCCCEEEEECCCCCHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHH
T ss_conf             99961776--46432368788----65667---7876899943595079999999986-499889974688621289999


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHC
Q ss_conf             56403672898405601371210354746789888516
Q gi|254780659|r  187 AQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQ  224 (274)
Q Consensus       187 ~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~  224 (274)
                      .++-.-|-.+...-=||--.-     ...+.|++|...
T Consensus        94 ~~~e~~g~~~~~P~~~CsL~~-----~~~p~i~~F~~~  126 (215)
T pfam02593        94 EQLEEFGVEVEFPEPFCSLEP-----VGNPVIDEFAER  126 (215)
T ss_pred             HHHHHCCCEEECCCCCCCCCC-----CCCHHHHHHHHH
T ss_conf             999975973877876557889-----888669999998


No 182
>KOG0884 consensus
Probab=30.37  E-value=44  Score=14.94  Aligned_cols=74  Identities=27%  Similarity=0.379  Sum_probs=44.2

Q ss_pred             ECHHHHCCC---CHHHHHHHCCC-EEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf             342653022---20475421893-89750079888754079998489928999996000058833259899999998634
Q gi|254780659|r   65 TGNHVWDKR---EALVFSQRHCK-FLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATC  140 (274)
Q Consensus        65 ~GNH~wd~k---ei~~~i~~~~~-ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~  140 (274)
                      +||-+|-+|   |..+|+...-| ++--+|--+.+-|.-+.|--.+    -.-+.+-=.+|= . +-+-|.+.|+ |+.+
T Consensus        62 gg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~k----q~hldmkytvfg-k-vidg~etlde-le~l  134 (161)
T KOG0884          62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK----QPHLDMKYTVFG-K-VIDGLETLDE-LEKL  134 (161)
T ss_pred             CCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECC----CCCCCEEEEEEE-E-ECCCHHHHHH-HHHC
T ss_conf             8754248743288999875063106871327999887568999357----766430566541-0-0021554778-8525


Q ss_pred             CCCCC
Q ss_conf             13689
Q gi|254780659|r  141 PLKEQ  145 (274)
Q Consensus       141 ~~~~~  145 (274)
                      +..++
T Consensus       135 ~v~~k  139 (161)
T KOG0884         135 PVNEK  139 (161)
T ss_pred             CCCCC
T ss_conf             66753


No 183
>TIGR01704 MTA/SAH-Nsdase MTA/SAH nucleosidase; InterPro: IPR010049   This entry represents the enzyme 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase which acts on its two substrates at the same active site. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulphur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria , ,]. This enzyme is widely distributed in bacteria. ; GO: 0008782 adenosylhomocysteine nucleosidase activity, 0008930 methylthioadenosine nucleosidase activity, 0009164 nucleoside catabolic process, 0019509 methionine salvage.
Probab=30.21  E-value=33  Score=15.69  Aligned_cols=50  Identities=28%  Similarity=0.445  Sum_probs=36.6

Q ss_pred             HHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC
Q ss_conf             898886099899991700478867899999999837998999342653022204754218
Q gi|254780659|r   23 PRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH   82 (274)
Q Consensus        23 p~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~   82 (274)
                      ..|-++|+||+||--|  ||||+--|-+.        =|++-+-+-=|+.-|+-.|==++
T Consensus        59 TLLL~~~KPD~~INTG--SAGGl~~TL~V--------GD~V~S~~~R~HD~DVTAF~YEY  108 (229)
T TIGR01704        59 TLLLDRYKPDVVINTG--SAGGLAHTLKV--------GDVVVSDDVRYHDVDVTAFDYEY  108 (229)
T ss_pred             HHHHHCCCCCEEEECC--CCCCCCCCCCC--------CCEEEECCCEECCCCEEECCCCC
T ss_conf             8887507997698588--75442331320--------56787167402143013205544


No 184
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.94  E-value=44  Score=14.89  Aligned_cols=70  Identities=19%  Similarity=0.285  Sum_probs=46.3

Q ss_pred             EEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH
Q ss_conf             999720276-88999999808988860998999917004788678-9999999983799899934265302220475421
Q gi|254780659|r    4 LFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFSQR   81 (274)
Q Consensus         4 LfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~   81 (274)
                      |-+=|.-|. .|+..-.+.+.++++...+.+-+        |-|| +.+.+++++++|+|-+..|--++.+++.+.-+-+
T Consensus        49 lHvVDLdgA~~g~~~n~~~I~~i~~~~~~~iqv--------GGGIRs~e~i~~~l~~G~~rViigT~a~~~~~~l~~~~~  120 (234)
T PRK13587         49 IHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEV--------GGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAH  120 (234)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf             999978764689743799999998437986798--------465475999999997689999988813028699999998


No 185
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.51  E-value=38  Score=15.34  Aligned_cols=53  Identities=11%  Similarity=0.064  Sum_probs=31.8

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCCC
Q ss_conf             478867899999999837998999342653022204754218-93897500798
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYPP   93 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p~   93 (274)
                      ++++.||...+++.|-+.|++|+-..+--=..++..+..++. ..+.-|++...
T Consensus        15 aa~~~GIG~aiA~~La~~GA~V~i~~~~e~~~~~~~~~~~~~g~~~~~~~Dvsd   68 (271)
T PRK06505         15 VANDHSIAWGIAKQLAAQGAELAFTYQGDALGKRVKPLAESLGSDLVLPCDVED   68 (271)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             999854999999999986999999818668899999999964981899837999


No 186
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.04  E-value=46  Score=14.79  Aligned_cols=53  Identities=15%  Similarity=0.038  Sum_probs=31.9

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCCC
Q ss_conf             478867899999999837998999342653022204754218-93897500798
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYPP   93 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p~   93 (274)
                      +|+++||...+++.|.+.|.+|+-....-=.++++.+..++. ...+.+++...
T Consensus        13 aag~~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvs~   66 (274)
T PRK08415         13 VANNKSIAYGIAKACFEQGAELAFTYLNDALKKRVEPIAQELGSPYVYELDVSK   66 (274)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             999837999999999986999999848878999999999862997699902899


No 187
>PRK13136 consensus
Probab=28.70  E-value=47  Score=14.75  Aligned_cols=94  Identities=16%  Similarity=0.273  Sum_probs=41.2

Q ss_pred             HCCCCCCCCHHHHHHHHHHHCCCCCCCC-EEEEECCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHH---CCCCE
Q ss_conf             0588332598999999986341368998-8999625762289999997608-95779980697624654564---03672
Q gi|254780659|r  120 VFMNPLLDDPFRTADKILATCPLKEQAD-VIVFDFHAETTSEKQCFAHFVD-SRASLVVGTHTHIPTADAQI---LDGGT  194 (274)
Q Consensus       120 ~fM~~~~d~PF~~~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A~g~~lD-GrVsaVvGTHTHV~TaD~rI---Lp~GT  194 (274)
                      ++|. +++.-|+.-++++++.+. ...| .|++|+--|...|=.....-.+ -.+..|  +-   .|.|+||   ....+
T Consensus        92 vlM~-Y~N~i~~~G~~f~~~~~~-~GvdGlIipDLP~eE~~~~~~~~~~~~i~~I~li--aP---tt~~eRi~~i~~~a~  164 (253)
T PRK13136         92 ILFT-YFNPLLAAGDKIYQQMKS-AGVDGCLVVDLPVEEAAPHLTACKTAKIAPILLI--SP---STTQERLKKINEHGE  164 (253)
T ss_pred             EEEC-CCHHHHHHHHHHHHHHHH-CCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEE--CC---CCCHHHHHHHHHCCC
T ss_conf             9986-517999979999999997-4987200678997776999999997588712552--68---998899999996089


Q ss_pred             E---EEECCCCCCCHHHCCCCCHHHHHHHH
Q ss_conf             8---98405601371210354746789888
Q gi|254780659|r  195 G---YITDLGMCGDYNSSIGLDKEEPINRF  221 (274)
Q Consensus       195 a---yiTDvGMtG~~~SVIG~~~~~~i~rf  221 (274)
                      +   |++=.|-||..... -.+-+..+++.
T Consensus       165 gFiY~vs~~GvTG~~~~~-~~~~~~~i~~i  193 (253)
T PRK13136        165 GMLYYVCRPGTTGVRATL-PENFPAKMNQI  193 (253)
T ss_pred             CEEEEEECCCCCCCCCCC-HHHHHHHHHHH
T ss_conf             819998555236876446-38899999999


No 188
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=28.65  E-value=47  Score=14.75  Aligned_cols=15  Identities=7%  Similarity=0.129  Sum_probs=6.9

Q ss_pred             CCHHHHHHHHHHHCC
Q ss_conf             598999999986341
Q gi|254780659|r  127 DDPFRTADKILATCP  141 (274)
Q Consensus       127 d~PF~~~d~~l~~~~  141 (274)
                      +|-.+-+-++++.+.
T Consensus       199 eNR~Rf~~Eii~aIR  213 (338)
T cd02933         199 ENRARFLLEVVDAVA  213 (338)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999899999999999


No 189
>PRK13124 consensus
Probab=28.38  E-value=47  Score=14.72  Aligned_cols=158  Identities=20%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCC----CEEEEECCCCCEEEEEEEEHHH
Q ss_conf             678999999998379989993426530222047542189389750079888754----0799984899289999960000
Q gi|254780659|r   45 FGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGN----GSGLYCAKNGSNVLVANIMGRV  120 (274)
Q Consensus        45 ~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~----G~~i~~~~~g~ki~Vinl~Gr~  120 (274)
                      .-.|.+.++.|.+.|+|+|-.|=--=|-.-      +-| +++-++.-.-.-|.    -+.+...-. .+.-    .--+
T Consensus        22 ~e~s~~~~~~l~~~GaDiiElGiPfSDP~A------DGp-vIq~A~~~AL~~G~~~~~~~~~~~~~r-~~~~----~piv   89 (257)
T PRK13124         22 PETTIDLVLALEEAGADILELGIPYSDPLA------DGP-VIQRASKRALNGGMNIVKAMELVGKMR-KKVT----IPIV   89 (257)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCC------CCH-HHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCC----CCEE
T ss_conf             899999999999769999997898888776------579-999999999976996899999999852-4478----8889


Q ss_pred             CCCCCCCCHH--HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHC---CC--C
Q ss_conf             5883325989--999999863413689988999625762289999997608957799806976246545640---36--7
Q gi|254780659|r  121 FMNPLLDDPF--RTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQIL---DG--G  193 (274)
Q Consensus       121 fM~~~~d~PF--~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rIL---p~--G  193 (274)
                      +|. + -||+  .-.++++++.....-.-.|++|+--|-..|=...+.-.+=..--.+ +    ||.|+||-   ..  |
T Consensus        90 lM~-Y-~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lv-a----PTs~~Ri~~i~~~s~g  162 (257)
T PRK13124         90 YFT-Y-YNPVLQYGLEKFFALARENGIDGLLIPDLPLEESGELQEICDKYGIYLIPLV-A----PTSKERIKKIAEQAEG  162 (257)
T ss_pred             EEE-H-HHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEE-C----CCCHHHHHHHHHCCCC
T ss_conf             975-0-0789875799999999975998477789997999999999986687357884-7----9967999999854898


Q ss_pred             EEE-EECCCCCCCHHHCCCCCHHHHHHHHH
Q ss_conf             289-84056013712103547467898885
Q gi|254780659|r  194 TGY-ITDLGMCGDYNSSIGLDKEEPINRFI  222 (274)
Q Consensus       194 Tay-iTDvGMtG~~~SVIG~~~~~~i~rf~  222 (274)
                      =-| ++=.|-||..... ..+-+..+++.+
T Consensus       163 FiY~vs~~GvTG~~~~~-~~~~~~~i~~ik  191 (257)
T PRK13124        163 FVYCVSSLGVTGVREEI-ETDLEEFIRTVK  191 (257)
T ss_pred             CEEEEECCCCCCCCCCC-HHHHHHHHHHHH
T ss_conf             38996246667876556-088999999998


No 190
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of  the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=28.26  E-value=33  Score=15.75  Aligned_cols=47  Identities=26%  Similarity=0.319  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf             9999980898886099899991700478867899999999837998999342
Q gi|254780659|r   16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGN   67 (274)
Q Consensus        16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GN   67 (274)
                      +-+++.|.++-..-.-+.++.++     |.+=..-...-|++.|=.+|+.-+
T Consensus         3 ~e~e~~la~~~~~~~~~~i~~~s-----gt~A~~~~~~~l~~~gd~vi~~~~   49 (170)
T cd01494           3 EELEEKLARLLQPGNDKAVFVPS-----GTGANEAALLALLGPGDEVIVDAN   49 (170)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECH-----HHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             99999999984899898999566-----999999999997279999998268


No 191
>COG2720 Uncharacterized vancomycin resistance protein [Defense mechanisms]
Probab=27.90  E-value=48  Score=14.67  Aligned_cols=45  Identities=27%  Similarity=0.589  Sum_probs=24.1

Q ss_pred             HHHCCCCEEEECCEECCC-CCCCCH---HHHHHHHHCCCCEEEECHHHH
Q ss_conf             886099899991700478-867899---999999837998999342653
Q gi|254780659|r   26 IRDFQLDFVIANGENSAG-GFGITE---KIFCEMMETGIDVITTGNHVW   70 (274)
Q Consensus        26 ~~~~~~DfvIaNgENaa~-G~Git~---~~~~~l~~~GvDviT~GNH~w   70 (274)
                      ++-|..-.+|+|||-+.+ |-||.+   -+++.+..+|.-+++--||++
T Consensus       214 ~~Gfv~g~iI~gg~~~~GvGGGICQvStTlfna~~~AGL~iVeR~~HSy  262 (376)
T COG2720         214 ANGFVEGPIISGGESDSGVGGGICQVSTTLFNAVYQAGLPIVERNNHSY  262 (376)
T ss_pred             HCCCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHHHCCCHHHEECCCCC
T ss_conf             2087434177788160356751205578999998855841311156653


No 192
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=27.65  E-value=49  Score=14.64  Aligned_cols=60  Identities=15%  Similarity=0.211  Sum_probs=32.8

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             92699972027688999999808988860998999917004788678999999998379989993
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT   65 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~   65 (274)
                      +||+|.|---=. -.+.+...|.++++++ +|.|++.|-.+   +|.-.-..+.=.+.||++|.-
T Consensus         4 ~~V~~~Ggrd~~-D~~~i~~~Ld~~~~~~-pd~vlihGG~~---kGad~lA~~WA~~~gv~~i~f   63 (71)
T pfam10686         4 TRVAFSGGRDFN-DHRLIWDALDKVHARH-PDMVLLHGGAP---KGAERIAARWARRRGVPQVAF   63 (71)
T ss_pred             CEEEEEECCCCC-HHHHHHHHHHHHHHHC-CCEEEEECCCC---CCHHHHHHHHHHHCCCCEEEE
T ss_conf             989998089865-0999999999999868-98799977986---337999999999869976976


No 193
>PRK13530 arsenate reductase; Provisional
Probab=27.57  E-value=49  Score=14.63  Aligned_cols=62  Identities=23%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             26999720276889999998089888609989999170047886789999999983799899934265302
Q gi|254780659|r    2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDK   72 (274)
Q Consensus         2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~   72 (274)
                      +|||+  =+|.++|.-+.+.|-  ++...-.|-+.-+--.  ..++.|...+-|.+.|+|.   -+|....
T Consensus         5 ~VLFv--Ct~Ns~RSqmAEal~--~~~~~~~~~v~SAG~~--~~~v~p~ai~vm~e~Gidi---s~~~~k~   66 (133)
T PRK13530          5 TIYFL--CTGNSCRSQMAEGWG--KQYLGDEWNVYSAGIE--AHGVNPNAIKAMKEVGIDI---SNQTSDL   66 (133)
T ss_pred             EEEEE--ECCCCHHHHHHHHHH--HHHCCCCEEEEECCCC--CCCCCHHHHHHHHHCCCCC---CCCCCCC
T ss_conf             79999--599627889999999--9865896699806778--7786989999999869165---5578775


No 194
>KOG2738 consensus
Probab=27.28  E-value=49  Score=14.64  Aligned_cols=25  Identities=40%  Similarity=0.605  Sum_probs=21.0

Q ss_pred             CCCEEEEEEE-EECCCCCCCCCCCCC
Q ss_conf             9867467899-876831657875349
Q gi|254780659|r  250 TGLAEKIAPI-RIGPRLSETRPDFWT  274 (274)
Q Consensus       250 tG~a~~I~ri-~igg~L~e~~p~~~~  274 (274)
                      -|.+..||++ .+|+.-..+|||=||
T Consensus       306 ~G~tFTIEPmit~G~~~d~tWPD~WT  331 (369)
T KOG2738         306 PGQTFTIEPMITIGTWEDITWPDDWT  331 (369)
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCE
T ss_conf             68558863024036655554899863


No 195
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=27.24  E-value=49  Score=14.59  Aligned_cols=89  Identities=20%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCC-CCCCCHH-HHHHHHHCCCCEEEECHHHHCCCCHHHH
Q ss_conf             9269997202768899999980898886099899991700478-8678999-9999983799899934265302220475
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAG-GFGITEK-IFCEMMETGIDVITTGNHVWDKREALVF   78 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~-G~Git~~-~~~~l~~~GvDviT~GNH~wd~kei~~~   78 (274)
                      |||+|+|-  ..-+...++..+   ...|++-.||..-+..+| |.-+.+. +.+.-.+.|+.+++--+  +...|..+.
T Consensus         1 mkI~f~Gt--~~fs~~~L~~L~---~~~~~i~~Vvt~pdk~~gR~~k~~~~~v~~~a~~~~i~~~~p~~--~~~~~~~~~   73 (309)
T PRK00005          1 MRIVFMGT--PEFAVPSLKALL---ESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPES--LRDPEFLAE   73 (309)
T ss_pred             CEEEEECC--CHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCC--CCCHHHHHH
T ss_conf             98999889--889999999999---78994799992999866899979899899999986993883577--999999999


Q ss_pred             HHH-CCCEEEECCCCCCCC
Q ss_conf             421-893897500798887
Q gi|254780659|r   79 SQR-HCKFLRPANYPPNTP   96 (274)
Q Consensus        79 i~~-~~~ilRP~N~p~~~P   96 (274)
                      +.+ .+.++--+.|..-.|
T Consensus        74 l~~~~~Dl~vv~~~g~iip   92 (309)
T PRK00005         74 LAALNADVIVVVAYGQILP   92 (309)
T ss_pred             HHHCCCCEEEEEEHHHHCC
T ss_conf             9841999999975234334


No 196
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis.  Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent.   The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=27.22  E-value=49  Score=14.59  Aligned_cols=43  Identities=16%  Similarity=0.158  Sum_probs=20.5

Q ss_pred             HHHCCCCEEEECCEECC-CC------CCC--------CHHHHHHHHHCCCCEEEECHH
Q ss_conf             88609989999170047-88------678--------999999998379989993426
Q gi|254780659|r   26 IRDFQLDFVIANGENSA-GG------FGI--------TEKIFCEMMETGIDVITTGNH   68 (274)
Q Consensus        26 ~~~~~~DfvIaNgENaa-~G------~Gi--------t~~~~~~l~~~GvDviT~GNH   68 (274)
                      |.+...-+||.-+-..+ .|      .||        -+++++.+.+.|.-++--=+|
T Consensus        42 rA~gG~GlIite~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avh~~G~~i~~QL~H   99 (336)
T cd02932          42 RALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH   99 (336)
T ss_pred             HHCCCCCEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9759973899745586612056998656567999999999999998669879986224


No 197
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far.  Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=26.82  E-value=50  Score=14.54  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=10.6

Q ss_pred             EEEEEECCCH---HHHHHHHHHHHHHHHHC
Q ss_conf             6999720276---88999999808988860
Q gi|254780659|r    3 LLFLGDIVGK---TGRSIVYEMLPRLIRDF   29 (274)
Q Consensus         3 iLfiGDIvG~---~Gr~~v~~~Lp~l~~~~   29 (274)
                      |.|+=|--+.   .--+.+++.+..+.+++
T Consensus         5 lvFllD~S~Sv~~~~F~~~k~Fv~~lv~~f   34 (186)
T cd01480           5 ITFVLDSSESVGLQNFDITKNFVKRVAERF   34 (186)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999996889878789999999999999998


No 198
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=26.66  E-value=37  Score=15.42  Aligned_cols=25  Identities=20%  Similarity=0.117  Sum_probs=20.9

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             4788678999999998379989993
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITT   65 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~   65 (274)
                      +++++||...++++|-+.|.+|+-.
T Consensus        15 aag~~GiG~aia~~la~~GA~V~i~   39 (259)
T PRK07370         15 IANNRSIAWGIAQQLHAAGAELGIT   39 (259)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             8998579999999999869999999


No 199
>PRK00103 SPOUT methyltransferase superfamily protein; Provisional
Probab=26.59  E-value=51  Score=14.52  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHH---HHHHC---CCCEEEE---CHHHHC
Q ss_conf             92699972027688999999808988860998999917004788678999999---99837---9989993---426530
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFC---EMMET---GIDVITT---GNHVWD   71 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~---~l~~~---GvDviT~---GNH~wd   71 (274)
                      ++|+.+|..--.+=++++.+++.+|.+-.+++++-...++.+....+.....+   .+++.   +--+|-+   |- .++
T Consensus         3 i~ii~iGK~~~~~~~~~i~~Y~kRl~~~~~i~~~el~~~~~~~~~~~~~~~~~E~~~il~~~~~~~~~I~LDe~Gk-~~s   81 (156)
T PRK00103          3 IQLIAVGKLMPKWVKEGFAEYAKRLPRDCKLELIEIPDEKRGKNADIERIKAKEGERILAAIPKGARVVALDIRGK-PWT   81 (156)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CCC
T ss_conf             9999970769679999999999971742588558947877767589999999999999984799998999917998-057


Q ss_pred             CCCHHHHHHH
Q ss_conf             2220475421
Q gi|254780659|r   72 KREALVFSQR   81 (274)
Q Consensus        72 ~kei~~~i~~   81 (274)
                      -.+...+|++
T Consensus        82 S~~fa~~l~~   91 (156)
T PRK00103         82 SEQFAKELER   91 (156)
T ss_pred             HHHHHHHHHH
T ss_conf             6999999999


No 200
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=26.42  E-value=32  Score=15.80  Aligned_cols=29  Identities=28%  Similarity=0.371  Sum_probs=22.8

Q ss_pred             CCCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             88678999999998379989993426530
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVITTGNHVWD   71 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd   71 (274)
                      -..-.+.++.+.-.++|+|+||-|.-.||
T Consensus        37 ~~~~~~~~~~~~Q~~aGidiitdGe~~~~   65 (320)
T PRK08575         37 AIREYTRRAFELLKDAGIKYTTDGLYRWD   65 (320)
T ss_pred             HHHHHHHHHHHHHHHCCCCEECCCCCHHH
T ss_conf             99999999999999749945256851088


No 201
>PRK06523 short chain dehydrogenase; Provisional
Probab=25.93  E-value=39  Score=15.24  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CCCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf             88678999999998379989993426
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVITTGNH   68 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDviT~GNH   68 (274)
                      ++.||.+.++++|.+.|++|+..+..
T Consensus        17 ~s~GIG~aia~~la~~Ga~V~~~~r~   42 (260)
T PRK06523         17 GTKGIGAATVARFREAGARVVTTARS   42 (260)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             57699999999999879999999488


No 202
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=25.87  E-value=36  Score=15.48  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEEEC
Q ss_conf             4678988851688654111578719999999984--799867467899876
Q gi|254780659|r  214 KEEPINRFITQIPRNRFVIANGPATLCGICAEIS--DVTGLAEKIAPIRIG  262 (274)
Q Consensus       214 ~~~~i~rf~t~~p~~r~~~a~g~~~l~gv~ieid--~~tG~a~~I~ri~ig  262 (274)
                      .+..++.-+...- ..|+...|++.|-|--|++.  +.-||.-....||+.
T Consensus       379 Ae~~L~~al~~~g-~~y~~~~GegAFYGPKID~~v~DalgR~wq~~TIQlD  428 (576)
T PRK12305        379 AEADLKKMLKDNK-INYKEMIGEAAFYGPKIDFQVKTVLNKEITVSTIQLD  428 (576)
T ss_pred             HHHHHHHHHHHCC-CCCEECCCCCCEECCCCCEEEECCCCCEEEEEEEEEE
T ss_conf             9999999999749-9714230650105676346985067867874245666


No 203
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=25.80  E-value=43  Score=14.99  Aligned_cols=19  Identities=32%  Similarity=0.209  Sum_probs=8.7

Q ss_pred             CEEEECHHHHCCCCHHHHH
Q ss_conf             8999342653022204754
Q gi|254780659|r   61 DVITTGNHVWDKREALVFS   79 (274)
Q Consensus        61 DviT~GNH~wd~kei~~~i   79 (274)
                      ++++.|-|..=++.+...+
T Consensus        25 ~~~S~G~~~~WR~~~v~~~   43 (233)
T pfam01209        25 DVISFGIHRLWKDFTMKCM   43 (233)
T ss_pred             HHHCCCHHHHHHHHHHHHC
T ss_conf             7860734999999999861


No 204
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=25.60  E-value=53  Score=14.40  Aligned_cols=45  Identities=11%  Similarity=0.271  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             999808988860998999917004788678999999998379989993
Q gi|254780659|r   18 VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT   65 (274)
Q Consensus        18 v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~   65 (274)
                      +.+.+.+--++++.+++|.|.++..   ---.+..++|.+.++|.|-.
T Consensus        17 ~~~gi~~~a~~~Gy~~~i~~s~~~~---~~e~~~i~~l~~~~vdgiI~   61 (268)
T cd06323          17 LKDGAQKEAKELGYELTVLDAQNDA---AKQLNDIEDLITRGVDAIII   61 (268)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999759989998199999---99999999999649998997


No 205
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=25.59  E-value=47  Score=14.71  Aligned_cols=79  Identities=24%  Similarity=0.383  Sum_probs=41.7

Q ss_pred             CCCCCCCEEEEEC-------CCCCEEEEEEEEHHHCCCCC---CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             8887540799984-------89928999996000058833---2598999999986341368998899962576228999
Q gi|254780659|r   93 PNTPGNGSGLYCA-------KNGSNVLVANIMGRVFMNPL---LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQ  162 (274)
Q Consensus        93 ~~~PG~G~~i~~~-------~~g~ki~Vinl~Gr~fM~~~---~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~  162 (274)
                      .|-=|.|-+++-.       .+|.++|        +|-|.   ..==+..+-++|+.+    ....-+.==---+-.-|.
T Consensus       334 QGDVGSGKT~VA~la~l~~i~~GYQ~A--------LMAPTEiLA~QHy~~~~~~l~p~----~~~vaLLTGs~k~~~r~~  401 (721)
T TIGR00643       334 QGDVGSGKTLVAALAMLAAIESGYQVA--------LMAPTEILAEQHYDSLRNLLAPL----GIEVALLTGSLKGKQRKE  401 (721)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCEEE--------EECCHHHHHHHHHHHHHHHHCCC----CCEEEEEECCCCHHHHHH
T ss_conf             101066389999999999984698099--------91776899999999999962354----857888615667878999


Q ss_pred             HHHHHHCCCEEEEEECCCCCC
Q ss_conf             999760895779980697624
Q gi|254780659|r  163 CFAHFVDSRASLVVGTHTHIP  183 (274)
Q Consensus       163 A~g~~lDGrVsaVvGTHTHV~  183 (274)
                      .+..--.|.+..|||||-=+|
T Consensus       402 ~~e~i~~G~~~~~vGTHALiq  422 (721)
T TIGR00643       402 LLETIASGEIHLVVGTHALIQ  422 (721)
T ss_pred             HHHHHHCCCCEEEEHHHHHHH
T ss_conf             999986395205733135545


No 206
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=25.52  E-value=53  Score=14.39  Aligned_cols=20  Identities=20%  Similarity=0.174  Sum_probs=10.6

Q ss_pred             CCCCHHHHHHHCCCEEEECC
Q ss_conf             02220475421893897500
Q gi|254780659|r   71 DKREALVFSQRHCKFLRPAN   90 (274)
Q Consensus        71 d~kei~~~i~~~~~ilRP~N   90 (274)
                      ++.+.++-+.=.||+||...
T Consensus        31 ~N~~af~~~~l~PRvL~dv~   50 (299)
T cd02809          31 RNRAAFDRIRLRPRVLRDVS   50 (299)
T ss_pred             HHHHHHHHCCEECCCCCCCC
T ss_conf             99999983647740134887


No 207
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=25.43  E-value=53  Score=14.38  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH-HH
Q ss_conf             99999998634136899889996257622899999976089577998069762465456403672898405601371-21
Q gi|254780659|r  130 FRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY-NS  208 (274)
Q Consensus       130 F~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~-~S  208 (274)
                      +....+.+++..+. .......++..|. +.+.+.-+.-..+.+|++-+.      |.--+ +--.+..+.|..=|- =|
T Consensus       134 ~~G~~~al~~~g~~-~~~~~~~~~~~~~-~~~~~~~ll~~~~~~Ai~~~n------D~~A~-g~~~~l~~~g~~vP~Dis  204 (259)
T cd01542         134 KQGYLDALKEHGIC-PPNIVETDFSYES-AYEAAQELLEPQPPDAIVCAT------DTIAL-GAMKYLQELGRRIPEDIS  204 (259)
T ss_pred             HHHHHHHHHHCCCC-CCEEEECCCCHHH-HHHHHHHHHHCCCCCCEEECC------HHHHH-HHHHHHHHCCCCCCCCEE
T ss_conf             99999999976999-6359965787778-999999997457998324345------89999-999999981999999869


Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             03547467898885
Q gi|254780659|r  209 SIGLDKEEPINRFI  222 (274)
Q Consensus       209 VIG~~~~~~i~rf~  222 (274)
                      |+|.|-.. +.+++
T Consensus       205 vigfdd~~-~~~~~  217 (259)
T cd01542         205 VAGFGGYE-LSSVV  217 (259)
T ss_pred             EEEECCHH-HHHHC
T ss_conf             99989829-99826


No 208
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=25.20  E-value=54  Score=14.35  Aligned_cols=139  Identities=18%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHC-CCCE-EEECHHHHCCCCHHHH
Q ss_conf             9269997202768899999980898886099899991700478867899999999837-9989-9934265302220475
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMET-GIDV-ITTGNHVWDKREALVF   78 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~-GvDv-iT~GNH~wd~kei~~~   78 (274)
                      |+||++.|.-+..-  + ....-++....++|+||-.|.-      +++..+.+|-.. ...+ .--||.=.+...    
T Consensus         2 m~ilviSDtH~~~~--~-~~~~~~~~~~~~~d~vih~GD~------~~~~~~~~l~~~~~~~i~~V~GN~D~~~~~----   68 (172)
T COG0622           2 MKILVISDTHGPLR--A-IEKALKIFNLEKVDAVIHAGDS------TSPFTLDALEGGLAAKLIAVRGNCDGEVDQ----   68 (172)
T ss_pred             CEEEEEECCCCCHH--H-HHHHHHHHHHCCCCEEEECCCC------CCCCCHHHHHHCCCCCEEEEECCCCCCCCC----
T ss_conf             48999954678724--6-6699998510599999989975------772337877411366369997778875101----


Q ss_pred             HHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHH-HCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             42189389750079888754079998489928999996000-05883325989999999863413689988999625762
Q gi|254780659|r   79 SQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGR-VFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAET  157 (274)
Q Consensus        79 i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr-~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa  157 (274)
                                    ...|=..  +++. +|.|+.++.  |- ++  + -.++ ...+.+-++    ..            
T Consensus        69 --------------~~~p~~~--~~~~-~g~ki~l~H--Gh~~~--~-~~~~-~~l~~la~~----~~------------  109 (172)
T COG0622          69 --------------EELPEEL--VLEV-GGVKIFLTH--GHLYF--V-KTDL-SLLEYLAKE----LG------------  109 (172)
T ss_pred             --------------CCCCHHH--EEEE-CCEEEEEEC--CCCCC--C-CCCH-HHHHHHHHH----CC------------
T ss_conf             --------------3599658--6898-889999988--98346--6-7688-899999974----69------------


Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             289999997608957799806976246545640367289840560137121
Q gi|254780659|r  158 TSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNS  208 (274)
Q Consensus       158 TSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~S  208 (274)
                                    ++.++==|||+|.+...   +|+-++-==-+|+|..|
T Consensus       110 --------------~Dvli~GHTH~p~~~~~---~~i~~vNPGS~s~pr~~  143 (172)
T COG0622         110 --------------ADVLIFGHTHKPVAEKV---GGILLVNPGSVSGPRGG  143 (172)
T ss_pred             --------------CCEEEECCCCCCEEEEE---CCEEEECCCCCCCCCCC
T ss_conf             --------------98999798675408998---99999849986777889


No 209
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=25.17  E-value=54  Score=14.35  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC-HHHHHHH-HHCCCCEEEECH
Q ss_conf             999720276889999998089888609989999170047886789-9999999-837998999342
Q gi|254780659|r    4 LFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT-EKIFCEM-METGIDVITTGN   67 (274)
Q Consensus         4 LfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git-~~~~~~l-~~~GvDviT~GN   67 (274)
                      .+.||=+=..-.+...+.+-.+.+++++|++||-----||-+|+. ..+|+.. -++||-++|+=+
T Consensus        54 iICGDnYf~en~dea~~~il~mv~~~~pDlfiAGPAFnAGRYGvACG~i~kaV~e~l~IP~vTgMy  119 (349)
T pfam07355        54 VICGDSYFNENIEEAVAEILEMLKEEKPDLFIAGPAFNAGRYGVACGTIAKAVKEELGIPAVTGMY  119 (349)
T ss_pred             EEECCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             996862444099999999999998429998987663256425888999999999986996386415


No 210
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=24.90  E-value=54  Score=14.32  Aligned_cols=49  Identities=18%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEECC-----------CC-CHHHHHHHHH-HHCCCEEEEE
Q ss_conf             25989999999863413689988999625-----------76-2289999997-6089577998
Q gi|254780659|r  126 LDDPFRTADKILATCPLKEQADVIVFDFH-----------AE-TTSEKQCFAH-FVDSRASLVV  176 (274)
Q Consensus       126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfH-----------aE-aTSEK~A~g~-~lDGrVsaVv  176 (274)
                      +-.||..++++++.++  ..-.+|++|..           || +|.|+++|-. |-.|-+-..+
T Consensus        10 ~~~~~s~Ie~Ai~al~--~Gk~Viv~DdedREnEgDlv~aAe~~t~e~i~fm~~~~~GliC~~~   71 (218)
T PRK00910         10 FGDPITRVENALQALR--EGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCL   71 (218)
T ss_pred             HCCCCCHHHHHHHHHH--CCCEEEEEECCCCCCHHCEEEEHHHCCHHHHHHHHHHCCCCEEEEC
T ss_conf             5798452999999998--8995999978998761416867664999999999995997199647


No 211
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=24.82  E-value=55  Score=14.31  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCC---EEEECHH------------HHCC
Q ss_conf             0276889999998089888609989999170047886789999999983-7998---9993426------------5302
Q gi|254780659|r    9 IVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGID---VITTGNH------------VWDK   72 (274)
Q Consensus         9 IvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvD---viT~GNH------------~wd~   72 (274)
                      |+|.|.+...++.+.-|.+ ++++|.+.|--    =.++|++..+++++ .|.+   .|-.---            .+..
T Consensus         3 iY~~~~C~t~rka~~~L~~-~~i~~~~id~~----k~plt~~eL~~~l~~~g~~~~~lin~r~~~~k~l~l~~~~~~ls~   77 (111)
T cd03036           3 FYEYPKCSTCRKAKKWLDE-HGVDYTAIDIV----EEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLSE   77 (111)
T ss_pred             EEECCCCHHHHHHHHHHHH-CCCCEEEEECC----CCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHCCCCCCCCCCCH
T ss_conf             9837998889999999998-59983999614----779599999999999498999986057615455593001313899


Q ss_pred             CCHHHHHHHCCCEE-EECC
Q ss_conf             22047542189389-7500
Q gi|254780659|r   73 REALVFSQRHCKFL-RPAN   90 (274)
Q Consensus        73 kei~~~i~~~~~il-RP~N   90 (274)
                      .|++++|-++|.|| ||.=
T Consensus        78 ~e~~~ll~~~P~LikRPIi   96 (111)
T cd03036          78 EEALELLSSDGMLIKRPFV   96 (111)
T ss_pred             HHHHHHHHHCCCEEECCEE
T ss_conf             9999999859444755789


No 212
>PRK12928 lipoyl synthase; Provisional
Probab=24.68  E-value=55  Score=14.29  Aligned_cols=37  Identities=11%  Similarity=0.201  Sum_probs=16.5

Q ss_pred             HHHHHHHHCCCCEEEECCEE----CCCCCCCCHHHHHHHHH
Q ss_conf             80898886099899991700----47886789999999983
Q gi|254780659|r   21 MLPRLIRDFQLDFVIANGEN----SAGGFGITEKIFCEMME   57 (274)
Q Consensus        21 ~Lp~l~~~~~~DfvIaNgEN----aa~G~Git~~~~~~l~~   57 (274)
                      ++.+-.++.+++.|+.-.=|    ..+|.+.=.+..+++.+
T Consensus        94 rvA~av~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~  134 (290)
T PRK12928         94 RVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRA  134 (290)
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999998389768984123678866452999999999984


No 213
>PRK07534 methionine synthase I; Validated
Probab=24.63  E-value=34  Score=15.64  Aligned_cols=22  Identities=14%  Similarity=0.338  Sum_probs=17.2

Q ss_pred             CCHHHHHHHHHCCCCEEEECHH
Q ss_conf             8999999998379989993426
Q gi|254780659|r   47 ITEKIFCEMMETGIDVITTGNH   68 (274)
Q Consensus        47 it~~~~~~l~~~GvDviT~GNH   68 (274)
                      +-.++-++.+++|+||||+-+-
T Consensus        46 ~V~~iH~dyi~AGAdVI~TNTy   67 (335)
T PRK07534         46 KIRALYQGAVDAGSDIFLTNSF   67 (335)
T ss_pred             HHHHHHHHHHHHCCCEEEECCC
T ss_conf             9999999999965999980776


No 214
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.32  E-value=56  Score=14.25  Aligned_cols=12  Identities=17%  Similarity=0.512  Sum_probs=5.3

Q ss_pred             HHHHHCCCCEEE
Q ss_conf             999837998999
Q gi|254780659|r   53 CEMMETGIDVIT   64 (274)
Q Consensus        53 ~~l~~~GvDviT   64 (274)
                      +.|-++|+|.|-
T Consensus       242 ~~l~~~gvD~l~  253 (353)
T cd04735         242 DKLADKGLDYLH  253 (353)
T ss_pred             HHHHHCCCCEEE
T ss_conf             999847998899


No 215
>PRK13114 consensus
Probab=24.22  E-value=56  Score=14.23  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=15.1

Q ss_pred             CCCHHHHHHHHHCCCCEEEECH
Q ss_conf             7899999999837998999342
Q gi|254780659|r   46 GITEKIFCEMMETGIDVITTGN   67 (274)
Q Consensus        46 Git~~~~~~l~~~GvDviT~GN   67 (274)
                      -.|.++.+.|-+.|+|+|-.|=
T Consensus        27 ~~t~~~i~~l~~~GaDiiEiGi   48 (266)
T PRK13114         27 GDTAANLDALVAGGADVIELGM   48 (266)
T ss_pred             HHHHHHHHHHHHCCCCEEEECC
T ss_conf             9999999999976999999799


No 216
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=24.10  E-value=56  Score=14.22  Aligned_cols=58  Identities=24%  Similarity=0.296  Sum_probs=36.6

Q ss_pred             CCCHHH------HHHHHHHHHHHHHHCCCC-EE--EECCEECCCCCCCCHHHHHHH--HHCCCCEEEEC
Q ss_conf             027688------999999808988860998-99--991700478867899999999--83799899934
Q gi|254780659|r    9 IVGKTG------RSIVYEMLPRLIRDFQLD-FV--IANGENSAGGFGITEKIFCEM--METGIDVITTG   66 (274)
Q Consensus         9 IvG~~G------r~~v~~~Lp~l~~~~~~D-fv--IaNgENaa~G~Git~~~~~~l--~~~GvDviT~G   66 (274)
                      |+|++|      -++|.+.|...-+....+ +.  =+|++....-+=+=.+++++|  -..|.+|=++|
T Consensus        48 iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~ln~~~~~~~vP~tG  116 (383)
T TIGR02928        48 IYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQLNRRGSGEEVPTTG  116 (383)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             878889878899999999999986226997158999778546846999999999851577888898877


No 217
>pfam02635 DrsE DsrE/DsrF-like family. DsrE is a small soluble protein involved in intracellular sulfur reduction. This family also includes DsrF.
Probab=24.04  E-value=56  Score=14.21  Aligned_cols=75  Identities=24%  Similarity=0.302  Sum_probs=47.6

Q ss_pred             EEEEEEECCCH--------HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf             26999720276--------8899999980898886099899991700478867899999999837998999342653022
Q gi|254780659|r    2 RLLFLGDIVGK--------TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKR   73 (274)
Q Consensus         2 kiLfiGDIvG~--------~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~k   73 (274)
                      .++|.||=|--        .+..-+.+.+..|.+ ++  .-+.-++|++..+|++++   +| --|+++..+|.-     
T Consensus        37 ~vv~~g~gV~~~~~~~~~~~~~~~~~~~l~~l~~-~g--v~~~vC~~s~~~~gi~~~---~l-~~~~~~~~~g~~-----  104 (119)
T pfam02635        37 EVFFYGDGVLLLLKDQAPAIDEKPLQELLKALAE-YG--VKLYVCGNSLKARGITED---DL-LPGVDVVPSGLG-----  104 (119)
T ss_pred             EEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHH-CC--CEEEEEHHHHHHCCCCHH---HC-CCCCCEEECCHH-----
T ss_conf             9999753888875479997532109999999996-79--969986899988599967---87-844464785899-----


Q ss_pred             CHHHHHHHCCCEEEE
Q ss_conf             204754218938975
Q gi|254780659|r   74 EALVFSQRHCKFLRP   88 (274)
Q Consensus        74 ei~~~i~~~~~ilRP   88 (274)
                      |+.+++.+..++|+|
T Consensus       105 el~~l~~~g~~~i~f  119 (119)
T pfam02635       105 ELAELQAEGDRVITF  119 (119)
T ss_pred             HHHHHHHHCCEEEEC
T ss_conf             999999835927739


No 218
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.92  E-value=57  Score=14.20  Aligned_cols=42  Identities=24%  Similarity=0.362  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             99808988860998999917004788678999999998379989993
Q gi|254780659|r   19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT   65 (274)
Q Consensus        19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~   65 (274)
                      ...+.++.+++++|.|.++....   .|+.  ........|+.++.+
T Consensus        72 ~~~~~~~~~~~~pDiIh~~~~~~---~~~~--a~~~~~~~~ip~i~~  113 (364)
T cd03814          72 RRRVRRLLDAFAPDVVHIATPGP---LGLA--ALRAARRLGIPVVTS  113 (364)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCH---HHHH--HHHHHHHCCCCEEEE
T ss_conf             99999999865999999878416---7899--999999759978999


No 219
>pfam00737 PsbH Photosystem II 10 kDa phosphoprotein. This protein is phosphorylated in a light dependent reaction.
Probab=23.91  E-value=26  Score=16.38  Aligned_cols=17  Identities=35%  Similarity=0.657  Sum_probs=12.1

Q ss_pred             CEEEECCCC--CCCCCCCE
Q ss_conf             389750079--88875407
Q gi|254780659|r   84 KFLRPANYP--PNTPGNGS  100 (274)
Q Consensus        84 ~ilRP~N~p--~~~PG~G~  100 (274)
                      .+|||+|..  +-+||.|.
T Consensus         6 ~lLkpLNseyGKvapGWGT   24 (52)
T pfam00737         6 DLLKPLNSEYGKVAPGWGT   24 (52)
T ss_pred             HHCCCCCCCCCCCCCCCCC
T ss_conf             2024554434742688667


No 220
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=23.88  E-value=54  Score=14.35  Aligned_cols=15  Identities=13%  Similarity=0.215  Sum_probs=7.7

Q ss_pred             HHHHHCCCCEEEECH
Q ss_conf             999837998999342
Q gi|254780659|r   53 CEMMETGIDVITTGN   67 (274)
Q Consensus        53 ~~l~~~GvDviT~GN   67 (274)
                      +.|.+..+|+|-.|=
T Consensus        64 ~~l~d~~i~aiKiGm   78 (253)
T PRK12413         64 NSLKDVPFSAIKIGL   78 (253)
T ss_pred             HHHHCCCCCEEEEEC
T ss_conf             996589989899916


No 221
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=23.63  E-value=57  Score=14.16  Aligned_cols=50  Identities=16%  Similarity=0.358  Sum_probs=27.9

Q ss_pred             EEEEH----HHCCCCCC--CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf             99600----00588332--59899999998634136899889996257622899999
Q gi|254780659|r  114 ANIMG----RVFMNPLL--DDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCF  164 (274)
Q Consensus       114 inl~G----r~fM~~~~--d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~  164 (274)
                      .|++|    |.+.+|..  ----.++..++......+...++++||||-+. -|.+|
T Consensus       113 ~~l~G~dLNR~w~~p~~~~hP~i~~~K~li~~~~~~~~~~~~y~DlHgHS~-k~n~F  168 (278)
T cd06906         113 CSLSGEDLNRQWQSPNPELHPTIYHTKGLLQYLAAIKRSPLVYCDYHGHSR-KKNVF  168 (278)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCEE
T ss_conf             577788567454788835395999999999999744774079994144445-46746


No 222
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=23.51  E-value=58  Score=14.15  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf             9980898886099899991700478867899999999837998999
Q gi|254780659|r   19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVIT   64 (274)
Q Consensus        19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT   64 (274)
                      .+.||++.+++.++-|+.|-+-.....=.-..+...|.+.|+.+.+
T Consensus        79 ~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~  124 (461)
T COG0415          79 EQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHS  124 (461)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9999999998185068850010563888999999888763954788


No 223
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179   The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=23.49  E-value=58  Score=14.14  Aligned_cols=77  Identities=18%  Similarity=0.315  Sum_probs=33.2

Q ss_pred             CCCCEEEECHHHHCCCCHHH-HHHHCCCEEEECCCCCCCCC------CCEEEEECCCCCEEEEEEEEH--------HHCC
Q ss_conf             79989993426530222047-54218938975007988875------407999848992899999600--------0058
Q gi|254780659|r   58 TGIDVITTGNHVWDKREALV-FSQRHCKFLRPANYPPNTPG------NGSGLYCAKNGSNVLVANIMG--------RVFM  122 (274)
Q Consensus        58 ~GvDviT~GNH~wd~kei~~-~i~~~~~ilRP~N~p~~~PG------~G~~i~~~~~g~ki~Vinl~G--------r~fM  122 (274)
                      +||++|-+=.|.=--+.+++ ||...=++|=-.=|=.-||=      +|... . .+|.=...--|+.        +.||
T Consensus        75 YgvNL~hs~~~p~~E~~~vdL~Lr~gV~~vEAsAFm~lTPalV~YRa~Gl~R-~-~~G~v~~~~R~~AKVSRpEVA~~Fm  152 (449)
T TIGR02814        75 YGVNLIHSPSDPELENGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHR-D-ADGRVVIRNRLIAKVSRPEVAEAFM  152 (449)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCC-C-CCCCEEECCEEEEEECCHHHHHHHC
T ss_conf             0677864777835689999999736996799872020368888885615721-6-8984777455678516679998621


Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             83325989999999863
Q gi|254780659|r  123 NPLLDDPFRTADKILAT  139 (274)
Q Consensus       123 ~~~~d~PF~~~d~~l~~  139 (274)
                      .|.   |=..+++++.+
T Consensus       153 ~PA---P~~~L~~L~a~  166 (449)
T TIGR02814       153 SPA---PAAILQKLLAE  166 (449)
T ss_pred             CCC---HHHHHHHHHHC
T ss_conf             523---48999998533


No 224
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=23.48  E-value=58  Score=14.14  Aligned_cols=15  Identities=33%  Similarity=0.532  Sum_probs=6.2

Q ss_pred             HHHHHHHHCCCCEEE
Q ss_conf             999999837998999
Q gi|254780659|r   50 KIFCEMMETGIDVIT   64 (274)
Q Consensus        50 ~~~~~l~~~GvDviT   64 (274)
                      +.++.|.++|+|+|+
T Consensus        97 ~r~~~l~~ag~d~i~  111 (325)
T cd00381          97 ERAEALVEAGVDVIV  111 (325)
T ss_pred             HHHHHHHHCCCCEEE
T ss_conf             999999976998999


No 225
>pfam02590 SPOUT_MTase Predicted SPOUT methyltransferase. This family of proteins are predicted to be SPOUT methyltransferases.
Probab=23.33  E-value=58  Score=14.13  Aligned_cols=47  Identities=23%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC
Q ss_conf             26999720276889999998089888609989999170047886789
Q gi|254780659|r    2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT   48 (274)
Q Consensus         2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git   48 (274)
                      +|+.+|-.--++-+.++..++.+|.+-.+++++-..-++.++.....
T Consensus         4 ~ii~iGk~~~~~~~~~~~~Y~kRl~~~~~i~~iel~~~~~~~~~~~~   50 (155)
T pfam02590         4 RIIAVGKLKEKYVKDGIAEYLKRLSRYCKLELIELPDEKRPSAADIE   50 (155)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHH
T ss_conf             99997275977999999999998174478857993787787755899


No 226
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase; InterPro: IPR014235    Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores, in the peptidoglycan wall or spore cortex. This entry represents a subset of the larger polysaccharide deacetylase family that is specifically involved in delta-lactam biosynthesis. PdaA from Bacillus subtilis acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the subsequent transpeptidation that leads to lactam ring formation, as heterologous expression in Escherichia coli of CwlD and PdaA together is sufficient for delta-lactam production..
Probab=23.32  E-value=19  Score=17.27  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=41.1

Q ss_pred             ECHHHHCCCCHHHHHHH---------------------CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEH--HHC
Q ss_conf             34265302220475421---------------------8938975007988875407999848992899999600--005
Q gi|254780659|r   65 TGNHVWDKREALVFSQR---------------------HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMG--RVF  121 (274)
Q Consensus        65 ~GNH~wd~kei~~~i~~---------------------~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~G--r~f  121 (274)
                      -|||+|..+++-..+++                     +++-+||   |.|       +|..   ..+...+=||  .||
T Consensus        92 vGNHS~hHPsl~~~~~~ek~~~El~~V~e~~~~vTG~~~~~YlRP---PrG-------~fSE---~tL~~t~~LGY~~vF  158 (225)
T TIGR02884        92 VGNHSVHHPSLTTVLDDEKFKEELDGVEEEFKEVTGKKEMKYLRP---PRG-------KFSE---RTLAYTKELGYKTVF  158 (225)
T ss_pred             ECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEECC---CCC-------CCHH---HHHHHHHHCCCCEEE
T ss_conf             325655775555513488999998889988764057627700078---787-------5405---789999974882110


Q ss_pred             -----CCC---CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf             -----883---3259899999998634136899889996257622
Q gi|254780659|r  122 -----MNP---LLDDPFRTADKILATCPLKEQADVIVFDFHAETT  158 (274)
Q Consensus       122 -----M~~---~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT  158 (274)
                           ++=   ..-.|=.+=+++++++.     +--|+=+||=+-
T Consensus       159 WSlAy~DW~~D~Q~G~~~A~~~im~~~H-----pGai~LLHAVS~  198 (225)
T TIGR02884       159 WSLAYKDWEVDKQKGKEYAYKQIMKKIH-----PGAILLLHAVSK  198 (225)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHCC-----CHHHHHHHCCCH
T ss_conf             0122026776987787778877754157-----024133231474


No 227
>KOG1207 consensus
Probab=23.13  E-value=59  Score=14.10  Aligned_cols=196  Identities=17%  Similarity=0.201  Sum_probs=96.9

Q ss_pred             CEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEE-------
Q ss_conf             8999917004788678999999998379989993426530222047542189389750079888754079998-------
Q gi|254780659|r   32 DFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYC-------  104 (274)
Q Consensus        32 DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~-------  104 (274)
                      +-+|++---  .|.||.+.++..|-++|+-||.--   -.+.++.++..+.|-+|-|.-..-+    +|....       
T Consensus         6 aG~~vlvTg--agaGIG~~~v~~La~aGA~ViAva---R~~a~L~sLV~e~p~~I~Pi~~Dls----~wea~~~~l~~v~   76 (245)
T KOG1207           6 AGVIVLVTG--AGAGIGKEIVLSLAKAGAQVIAVA---RNEANLLSLVKETPSLIIPIVGDLS----AWEALFKLLVPVF   76 (245)
T ss_pred             CCEEEEEEC--CCCCCCHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHCCCC
T ss_conf             661999605--666414999999986688799995---6988999998529764245575133----8999997614657


Q ss_pred             ----CCCCCEEEEEEEEH--------HHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEC-----------CCCCHHHH
Q ss_conf             ----48992899999600--------00588332598999999986341368998899962-----------57622899
Q gi|254780659|r  105 ----AKNGSNVLVANIMG--------RVFMNPLLDDPFRTADKILATCPLKEQADVIVFDF-----------HAETTSEK  161 (274)
Q Consensus       105 ----~~~g~ki~Vinl~G--------r~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDf-----------HaEaTSEK  161 (274)
                          ..|..-++.+.-.|        |.|-- .+.-||..++-+-... +.+..+-.+|..           |.--.|-|
T Consensus        77 pidgLVNNAgvA~~~pf~eiT~q~fDr~F~V-Nvravi~v~Q~var~l-v~R~~~GaIVNvSSqas~R~~~nHtvYcatK  154 (245)
T KOG1207          77 PIDGLVNNAGVATNHPFGEITQQSFDRTFAV-NVRAVILVAQLVARNL-VDRQIKGAIVNVSSQASIRPLDNHTVYCATK  154 (245)
T ss_pred             CHHHHHCCCHHHHCCHHHHHHHHHHCCEEEE-EEEEEEEHHHHHHHHH-HHCCCCCEEEEECCHHCCCCCCCCEEEEECH
T ss_conf             5134303501443163788868763000454-2122210899988766-6405886089740211036668834775138


Q ss_pred             HHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             99997608957799806976246545640367289840560137121035474678988851688654111578719999
Q gi|254780659|r  162 QCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCG  241 (274)
Q Consensus       162 ~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~g  241 (274)
                      .|+-..-. -...-+|.|.----+     -+-|-.+||.|.--  +|    ||+ --++++..+|-.||.+  -+-..++
T Consensus       155 aALDmlTk-~lAlELGp~kIRVNs-----VNPTVVmT~MG~dn--WS----DP~-K~k~mL~riPl~rFaE--V~eVVnA  219 (245)
T KOG1207         155 AALDMLTK-CLALELGPQKIRVNS-----VNPTVVMTDMGRDN--WS----DPD-KKKKMLDRIPLKRFAE--VDEVVNA  219 (245)
T ss_pred             HHHHHHHH-HHHHHHCCCEEEEEC-----CCCEEEEECCCCCC--CC----CCH-HCCCHHHHCCHHHHHH--HHHHHHH
T ss_conf             78999999-988751864157405-----58718881146444--68----910-1053554376555557--9999756


Q ss_pred             EEEEEECCCCCE
Q ss_conf             999984799867
Q gi|254780659|r  242 ICAEISDVTGLA  253 (274)
Q Consensus       242 v~ieid~~tG~a  253 (274)
                      ++.-+.++++-.
T Consensus       220 ~lfLLSd~ssmt  231 (245)
T KOG1207         220 VLFLLSDNSSMT  231 (245)
T ss_pred             HEEEEECCCCCC
T ss_conf             325652576763


No 228
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843    This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=23.10  E-value=46  Score=14.77  Aligned_cols=112  Identities=20%  Similarity=0.287  Sum_probs=61.3

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEE--------------CH-HHHCCC-CHHHHHHHCC------CEEEECCCCCCCCCC
Q ss_conf             4788678999999998379989993--------------42-653022-2047542189------389750079888754
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITT--------------GN-HVWDKR-EALVFSQRHC------KFLRPANYPPNTPGN   98 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~--------------GN-H~wd~k-ei~~~i~~~~------~ilRP~N~p~~~PG~   98 (274)
                      .++|.|||..-.++|.++|+|=|=.              |. ++|.|| ++-..+.+..      .++-=-|.. ..|.-
T Consensus        87 ITSGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~V~HR~Ni~-~i~~~  165 (363)
T TIGR02109        87 ITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTLNFVLHRHNID-QIPEI  165 (363)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHCCCCCHHH-HHHHH
T ss_conf             77634567999999975798578876414787888641250258999999999999618981760200242021-36789


Q ss_pred             -CEE-EEECCCCCEEEEEEEEH-----HHC-CCCCCCCHHHHHHHHHHH--CCCCCC---CCEEEE--ECCCC
Q ss_conf             -079-99848992899999600-----005-883325989999999863--413689---988999--62576
Q gi|254780659|r   99 -GSG-LYCAKNGSNVLVANIMG-----RVF-MNPLLDDPFRTADKILAT--CPLKEQ---ADVIVF--DFHAE  156 (274)
Q Consensus        99 -G~~-i~~~~~g~ki~Vinl~G-----r~f-M~~~~d~PF~~~d~~l~~--~~~~~~---~~~i~V--DfHaE  156 (274)
                       -.. -... +-..||-+|--|     |-. | |. ..=-..+.++.++  -+++..   ..+++|  |+|+|
T Consensus       166 i~La~~L~A-drvE~A~~QyYGWA~~NR~aLl-Pt-~~Ql~~a~r~V~~aRer~~g~~~~~~l~yV~PDYY~~  235 (363)
T TIGR02109       166 IELAIELGA-DRVELATTQYYGWALLNRAALL-PT-REQLEEATRIVEEARERLKGQGNPLSLDYVVPDYYAE  235 (363)
T ss_pred             HHHHHHCCC-CEEEEEEECCHHHHHHHHHHCC-CC-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHC
T ss_conf             999986389-8488874020225677454248-98-8999999999999999986079982367634871210


No 229
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=23.09  E-value=59  Score=14.10  Aligned_cols=50  Identities=22%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCEEEEECCC-----------C-CHHHHHHHHH-HHCCCEEEEE
Q ss_conf             3259899999998634136899889996257-----------6-2289999997-6089577998
Q gi|254780659|r  125 LLDDPFRTADKILATCPLKEQADVIVFDFHA-----------E-TTSEKQCFAH-FVDSRASLVV  176 (274)
Q Consensus       125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa-----------E-aTSEK~A~g~-~lDGrVsaVv  176 (274)
                      .+-.||..+++.++.++  ..-.+|++|-.-           | +|.|+++|-. |-.|-+-+.+
T Consensus         8 ~~~~~f~~Ie~Ai~al~--~G~~Viv~Dd~dREnEgDlv~aAe~~t~e~v~fm~~~~~GliCv~~   70 (217)
T PRK03353          8 SFGTPFERVEAALDALR--EGRGVLVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCL   70 (217)
T ss_pred             HHCCCCCHHHHHHHHHH--CCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECC
T ss_conf             60897215999999998--7995999838998764068978543999999999995799788359


No 230
>CHL00066 psbH photosystem II protein H
Probab=23.05  E-value=28  Score=16.15  Aligned_cols=18  Identities=39%  Similarity=0.759  Sum_probs=13.2

Q ss_pred             CEEEECC--CCCCCCCCCEE
Q ss_conf             3897500--79888754079
Q gi|254780659|r   84 KFLRPAN--YPPNTPGNGSG  101 (274)
Q Consensus        84 ~ilRP~N--~p~~~PG~G~~  101 (274)
                      .+|||+|  |-+-+||.|.+
T Consensus        21 ~~LkplNSeyGKVaPGWGTT   40 (73)
T CHL00066         21 DLLKPLNSEYGKVAPGWGTT   40 (73)
T ss_pred             HHCCCCCCCCCCCCCCCCCC
T ss_conf             31356755456335785651


No 231
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=23.04  E-value=26  Score=16.39  Aligned_cols=38  Identities=34%  Similarity=0.482  Sum_probs=21.9

Q ss_pred             CEEEECCCC--CCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf             389750079--888754079998489928999996000058833259899999998634
Q gi|254780659|r   84 KFLRPANYP--PNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATC  140 (274)
Q Consensus        84 ~ilRP~N~p--~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~  140 (274)
                      .+|||+|..  +-+||.|.+-             +|| +||.  +   |..+--++-++
T Consensus         9 ~~LkplNSeyGKVaPGWGTTp-------------lMg-v~m~--L---f~vfl~iiLei   48 (64)
T PRK02624          9 DLLKPLNSEYGKVVPGWGTTP-------------VMA-VFMV--L---FLVFLLIILQI   48 (64)
T ss_pred             HHCCCCCCCCCCCCCCCCCCH-------------HHH-HHHH--H---HHHHHHHHHHH
T ss_conf             533555554575058866758-------------999-9999--9---99999999999


No 232
>TIGR00433 bioB biotin synthase; InterPro: IPR002684   Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions .    Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine .  ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=22.84  E-value=57  Score=14.19  Aligned_cols=35  Identities=11%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             HHHHHHHH--CCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCE
Q ss_conf             80898886--0998999917004788678999999998379989
Q gi|254780659|r   21 MLPRLIRD--FQLDFVIANGENSAGGFGITEKIFCEMMETGIDV   62 (274)
Q Consensus        21 ~Lp~l~~~--~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDv   62 (274)
                      .+.+.+++  +++..+.+=|+       ++++.+++|.+||+|+
T Consensus       143 ~~~~~~~~ee~GL~~C~~LG~-------l~~eqa~~LKdAGld~  179 (350)
T TIGR00433       143 AVVKIVEEEELGLKTCATLGL-------LDPEQAKQLKDAGLDR  179 (350)
T ss_pred             HHHHHHHHCCCCCHHHHCCCC-------CCHHHHHHHHHCCCCC
T ss_conf             999997520037122320377-------6889999888638861


No 233
>pfam01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase.
Probab=22.67  E-value=60  Score=14.04  Aligned_cols=75  Identities=21%  Similarity=0.288  Sum_probs=37.3

Q ss_pred             CHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEE---CCCCCCCCH---------HHHCCCCEE
Q ss_conf             98999999986341368998899962576228999999760895779980---697624654---------564036728
Q gi|254780659|r  128 DPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVG---THTHIPTAD---------AQILDGGTG  195 (274)
Q Consensus       128 ~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvG---THTHV~TaD---------~rILp~GTa  195 (274)
                      .-|..+.-+|.+.    +    ++-|||-|.--|       ||.++..+|   |..---+||         |+.......
T Consensus       183 ~ifsvmnyllp~~----~----vlpmHcsan~g~-------~gd~alfFGLSGTGKTTLSaDp~R~LIGDDEhgW~~~Gv  247 (451)
T pfam01293       183 SIFSVMNYLLPLK----G----VLPMHCSANVGE-------DGDVALFFGLSGTGKTTLSADPNRRLIGDDEHGWSDNGV  247 (451)
T ss_pred             HHHHHHHHHCHHC----C----EEEEEEECCCCC-------CCCEEEEEECCCCCCEEEECCCCCEEECCCEEEECCCCE
T ss_conf             9999998756114----9----288751101268-------997489982167773345148886066276500268886


Q ss_pred             EEECCCCCCCHHHCCCCCHH--HHHHH
Q ss_conf             98405601371210354746--78988
Q gi|254780659|r  196 YITDLGMCGDYNSSIGLDKE--EPINR  220 (274)
Q Consensus       196 yiTDvGMtG~~~SVIG~~~~--~~i~r  220 (274)
                      |-..   -|+|.-.|+.+++  +.|.+
T Consensus       248 fnfE---GGCYAK~i~Ls~e~EP~I~~  271 (451)
T pfam01293       248 FNFE---GGCYAKTINLSEEKEPEIYN  271 (451)
T ss_pred             EEEC---CCEEEEECCCCCCCCCHHHH
T ss_conf             9945---86463104788334732998


No 234
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.39  E-value=61  Score=14.01  Aligned_cols=51  Identities=10%  Similarity=0.010  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             889999998089888609989999170047886789999999983799899934
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG   66 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G   66 (274)
                      |--..+.+.+...-++++.+.++.|..+..   -.-.+..+.|.+.+||.|-.-
T Consensus        12 pf~~~i~~gie~~~~~~gy~~ll~~s~~~~---~~e~~~i~~l~~~~vdGiIi~   62 (265)
T cd06290          12 PFYGRILKGMERGLNGSGYSPIIATGHWNQ---SRELEALELLKSRRVDALILL   62 (265)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999999999999869989999799997---999999999996599989992


No 235
>cd01149 HutB Hemin binding protein HutB.  These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.36  E-value=61  Score=14.00  Aligned_cols=39  Identities=18%  Similarity=0.288  Sum_probs=26.9

Q ss_pred             HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE-CHHHH
Q ss_conf             8860998999917004788678999999998379989993-42653
Q gi|254780659|r   26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT-GNHVW   70 (274)
Q Consensus        26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~-GNH~w   70 (274)
                      .-..+||+||++...      -.++.+++|.++|+.++.. +...+
T Consensus        54 il~l~PDLVi~~~~~------~~~~~~~~L~~~gi~v~~~~~~~~~   93 (235)
T cd01149          54 VLSLKPTLVIASDEA------GPPEALDQLRAAGVPVVTVPSTPTL   93 (235)
T ss_pred             HHHCCCCEEEEECCC------CHHHHHHHHHHCCCCEEECCCCCCH
T ss_conf             973799889981776------8399999999629907955898887


No 236
>PRK09206 pyruvate kinase; Provisional
Probab=22.18  E-value=61  Score=13.98  Aligned_cols=29  Identities=14%  Similarity=0.417  Sum_probs=21.9

Q ss_pred             CCHHHHHHHHHCCCCEEEE----CHHHHCCCCH
Q ss_conf             8999999998379989993----4265302220
Q gi|254780659|r   47 ITEKIFCEMMETGIDVITT----GNHVWDKREA   75 (274)
Q Consensus        47 it~~~~~~l~~~GvDviT~----GNH~wd~kei   75 (274)
                      -+++..++|+++|+||+-.    |+|-|.++-+
T Consensus        15 ~~~e~L~~li~aG~~v~RiN~SHg~~e~h~~~i   47 (470)
T PRK09206         15 ESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRI   47 (470)
T ss_pred             CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf             999999999986998999979999999999999


No 237
>PRK05481 lipoyl synthase; Provisional
Probab=22.15  E-value=61  Score=13.98  Aligned_cols=11  Identities=18%  Similarity=0.549  Sum_probs=3.9

Q ss_pred             HHHCCCCEEEE
Q ss_conf             88609989999
Q gi|254780659|r   26 IRDFQLDFVIA   36 (274)
Q Consensus        26 ~~~~~~DfvIa   36 (274)
                      .++.++.+|+.
T Consensus        91 v~~m~Lk~vVi  101 (289)
T PRK05481         91 VARMGLKYVVI  101 (289)
T ss_pred             HHHHCCCEEEE
T ss_conf             99828976999


No 238
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=22.08  E-value=62  Score=13.97  Aligned_cols=13  Identities=23%  Similarity=0.432  Sum_probs=7.7

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             6789888516886
Q gi|254780659|r  215 EEPINRFITQIPR  227 (274)
Q Consensus       215 ~~~i~rf~t~~p~  227 (274)
                      ...+++.+...|.
T Consensus       177 ~~ai~~~r~~~p~  189 (284)
T PRK06096        177 SGAINQLRRHAPE  189 (284)
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999975899


No 239
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain.  DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=22.00  E-value=62  Score=13.96  Aligned_cols=31  Identities=10%  Similarity=-0.057  Sum_probs=23.8

Q ss_pred             ECCCCCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf             0478867899999999837998999342653
Q gi|254780659|r   40 NSAGGFGITEKIFCEMMETGIDVITTGNHVW   70 (274)
Q Consensus        40 Naa~G~Git~~~~~~l~~~GvDviT~GNH~w   70 (274)
                      +||+.++-+.+...+++++|.-.++.|-=+.
T Consensus        17 lAAG~~~~~~~~~~~~~~~G~G~vv~ktit~   47 (299)
T cd02940          17 LASAPPTTSYPMIRRAFEAGWGGAVTKTLGL   47 (299)
T ss_pred             ECCCCCCCCHHHHHHHHHCCCCEEECCEECC
T ss_conf             7877899899999999987988899156898


No 240
>KOG0910 consensus
Probab=21.99  E-value=40  Score=15.16  Aligned_cols=86  Identities=17%  Similarity=0.190  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH-------HCCCEE-EEEECCCCCCCCHHH---HCCCCEEEEE
Q ss_conf             99999998634136899889996257622899999976-------089577-998069762465456---4036728984
Q gi|254780659|r  130 FRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHF-------VDSRAS-LVVGTHTHIPTADAQ---ILDGGTGYIT  198 (274)
Q Consensus       130 F~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~-------lDGrVs-aVvGTHTHV~TaD~r---ILp~GTayiT  198 (274)
                      +...+..+.+    .+. -.+||||||=-..=..|.=-       +.|++- +.+-|-+|..+|+.-   -+|  |-.+=
T Consensus        50 ~~~~~~~Vi~----S~~-PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avP--tvlvf  122 (150)
T KOG0910          50 DSEFDDKVIN----SDV-PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVP--TVLVF  122 (150)
T ss_pred             HHHHHHHHHC----CCC-CEEEEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHCCEEEEE--EEEEE
T ss_conf             8899999874----699-8899986575743767469999987753371789997265660137646316502--89998


Q ss_pred             CCCCCCCHHHCCCCCHHHHHHHHHHC
Q ss_conf             05601371210354746789888516
Q gi|254780659|r  199 DLGMCGDYNSSIGLDKEEPINRFITQ  224 (274)
Q Consensus       199 DvGMtG~~~SVIG~~~~~~i~rf~t~  224 (274)
                      +=|+-  .|+++|.-++.-+..++..
T Consensus       123 knGe~--~d~~vG~~~~~~l~~~i~k  146 (150)
T KOG0910         123 KNGEK--VDRFVGAVPKEQLRSLIKK  146 (150)
T ss_pred             ECCEE--EEEECCCCCHHHHHHHHHH
T ss_conf             79988--6622045798999999999


No 241
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=21.97  E-value=62  Score=13.95  Aligned_cols=183  Identities=9%  Similarity=0.024  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH-CCCEEEECCC
Q ss_conf             889999998089888609989999170047886789999999983799899934265302220475421-8938975007
Q gi|254780659|r   13 TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR-HCKFLRPANY   91 (274)
Q Consensus        13 ~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~-~~~ilRP~N~   91 (274)
                      |=-..+.+.+.+.-++++.+++|.|.++...   .-.+..+.|.+.+||.|-...|..+-+   .+.+. -|-++--..+
T Consensus        12 pff~~i~~gi~~~~~~~Gy~l~i~~s~~~~~---~e~~~l~~l~~~~vDGiI~~~~~~~~~---~~~~~~iPvV~~d~~~   85 (265)
T cd06291          12 PFFSELARAVEKELYKKGYKLILCNSDNDPE---KEREYLEMLRQNQVDGIIAGTHNLGIE---EYENIDLPIVSFDRYL   85 (265)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCHH---HHHHCCCCEEEEECCC
T ss_conf             9999999999999998799899996899989---999999999856998587417884099---9997799999970557


Q ss_pred             CCCCCCCCEEEEE-------------CCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
Q ss_conf             9888754079998-------------489928999996000058833259899999998634136899889996257622
Q gi|254780659|r   92 PPNTPGNGSGLYC-------------AKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETT  158 (274)
Q Consensus        92 p~~~PG~G~~i~~-------------~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT  158 (274)
                      .+..|   +...+             ..+-++|+.+.-  ..-.......=+....+.+++..+  ..+.+  .++...+
T Consensus        86 ~~~~~---~V~~Dn~~~~~~a~~~L~~~Ghr~I~~i~~--~~~~~~~~~~R~~Gf~~al~~~g~--~~~~~--~~~~~~~  156 (265)
T cd06291          86 SENIP---IVSSDNYEGGRLAAEELIERGCKHIAHIGG--PNNTVSPTNLRYEGFLDVLKENGL--EVRII--EIQENFD  156 (265)
T ss_pred             CCCCC---EEEECHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCCCHHHHHHHHHHHHHHHCCC--CCEEE--EECCCCC
T ss_conf             99999---899776999999999999739964999966--888874899999999999997699--96089--9768898


Q ss_pred             HH--HHHHHHHHC--CCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH-HHCCCCCHHHH
Q ss_conf             89--999997608--9577998069762465456403672898405601371-21035474678
Q gi|254780659|r  159 SE--KQCFAHFVD--SRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY-NSSIGLDKEEP  217 (274)
Q Consensus       159 SE--K~A~g~~lD--GrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~-~SVIG~~~~~~  217 (274)
                      .+  ..++-.+|.  .+.+||+-+.-.+.-       +--.+..+.|..=|- =||+|.|-.+.
T Consensus       157 ~~~~~~~~~~~l~~~~~~~Ai~~~nD~~A~-------g~~~al~~~g~~vP~disvigfDd~~~  213 (265)
T cd06291         157 DAEKKEEIKELLEEYPDIDGIFASNDLTAI-------LVLKEAQQRGIRVPEDLQIIGYDGTKL  213 (265)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEECCCHHHHH-------HHHHHHHHCCCCCCCCEEEEEECCHHH
T ss_conf             699999999998559998843216689999-------999999981999999869999888099


No 242
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.94  E-value=53  Score=14.38  Aligned_cols=19  Identities=5%  Similarity=0.132  Sum_probs=9.2

Q ss_pred             HHHHHHHHHCCCCEEEECH
Q ss_conf             9999999837998999342
Q gi|254780659|r   49 EKIFCEMMETGIDVITTGN   67 (274)
Q Consensus        49 ~~~~~~l~~~GvDviT~GN   67 (274)
                      -+..++.++.||+.+..=.
T Consensus        24 ~~~ve~al~~Gv~~vQlR~   42 (211)
T COG0352          24 LEWVEAALKGGVTAVQLRE   42 (211)
T ss_pred             HHHHHHHHHCCCEEEEEEC
T ss_conf             9999999967994999802


No 243
>KOG2550 consensus
Probab=21.67  E-value=63  Score=13.91  Aligned_cols=37  Identities=16%  Similarity=0.358  Sum_probs=18.6

Q ss_pred             CCCCCHHHHHHHHHCCCCEEEE----CHHHHCCCCHHHHHHH
Q ss_conf             8678999999998379989993----4265302220475421
Q gi|254780659|r   44 GFGITEKIFCEMMETGIDVITT----GNHVWDKREALVFSQR   81 (274)
Q Consensus        44 G~Git~~~~~~l~~~GvDviT~----GNH~wd~kei~~~i~~   81 (274)
                      -+.-.+.....|-.+|+|||-+    ||-+| |-|++.|+.+
T Consensus       248 Tre~dK~rl~ll~~aGvdvviLDSSqGnS~~-qiemik~iK~  288 (503)
T KOG2550         248 TRDDDKERLDLLVQAGVDVVILDSSQGNSIY-QLEMIKYIKE  288 (503)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHHHHHH
T ss_conf             6630167788866348868999668885045-7999999986


No 244
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=21.52  E-value=62  Score=13.93  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=36.1

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCC--------EEEECCEECCCCCCCCHHHHHHHH---HC-CCCEEEECHH
Q ss_conf             92699972027688999999808988860998--------999917004788678999999998---37-9989993426
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLD--------FVIANGENSAGGFGITEKIFCEMM---ET-GIDVITTGNH   68 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~D--------fvIaNgENaa~G~Git~~~~~~l~---~~-GvDviT~GNH   68 (274)
                      ||...||||=|-  .+.+++.|.++.-..+-|        -+|-=|.=..-|-- +.+..+.+.   +. .+-+ -.|||
T Consensus         1 m~~~VIGDIHGC--~~~L~~LL~ki~f~~~~d~~~~p~~d~LvflGDlVdRGP~-S~~vl~~v~~l~~~~~~~~-v~GNH   76 (245)
T PRK13625          1 MKYDIIGDIHGC--YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPH-SLRMIEIVWELVHKKAAYY-VPGNH   76 (245)
T ss_pred             CCEEEEEECCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHCCCEEE-EECHH
T ss_conf             937899558789--8999999997086623576568887679994653278957-0999999999986598799-95807


No 245
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.47  E-value=63  Score=13.89  Aligned_cols=133  Identities=16%  Similarity=0.200  Sum_probs=72.5

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH
Q ss_conf             92699972027688999999808988860998999917004788678999999998379989993426530222047542
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ   80 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~   80 (274)
                      |+||.+|= -|.-||..+++.|.   +-|++-.++=|           ++.+..|...|++++. ||- -|...+..-++
T Consensus         1 M~ILV~GA-TG~lGr~vVr~Ll~---~G~~Vr~lvRn-----------p~ka~~l~~~Gve~v~-gDl-~dpesl~~Al~   63 (319)
T CHL00194          1 MSLLVIGA-TGTLGRQIVRRALD---EGYQVKCLVRN-----------LRKAAFLKEWGAELVY-GDL-SLPETIPPALE   63 (319)
T ss_pred             CEEEEECC-CCHHHHHHHHHHHH---CCCCEEEEECC-----------HHHHHHHHHCCCEEEE-ECC-CCHHHHHHHHC
T ss_conf             97999899-85899999999996---88908999578-----------6763234215967999-427-88778999965


Q ss_pred             HCCCEEEECCCCCCCCCCCEE--------EEE--CCCCC-EEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             189389750079888754079--------998--48992-8999996000058833259899999998634136899889
Q gi|254780659|r   81 RHCKFLRPANYPPNTPGNGSG--------LYC--AKNGS-NVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVI  149 (274)
Q Consensus        81 ~~~~ilRP~N~p~~~PG~G~~--------i~~--~~~g~-ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i  149 (274)
                      ..+.++-.....+..+..-+.        +++  ...|. ++.-++.+|--   +....|+.......|+.-.....+..
T Consensus        64 GvdaVi~~~~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~---~~~~~p~~~~K~~~E~~L~~Sgl~~T  140 (319)
T CHL00194         64 GITAIIDASTSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAE---QYPQVPLMKIKSDIEEKLKQSGINYT  140 (319)
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf             996799945667788620889889889999999998499889996135666---68875677879999999986799859


Q ss_pred             EEEC
Q ss_conf             9962
Q gi|254780659|r  150 VFDF  153 (274)
Q Consensus       150 ~VDf  153 (274)
                      ++--
T Consensus       141 IlRP  144 (319)
T CHL00194        141 IFRL  144 (319)
T ss_pred             EECC
T ss_conf             9847


No 246
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=21.44  E-value=63  Score=13.88  Aligned_cols=79  Identities=22%  Similarity=0.233  Sum_probs=45.8

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEEC-CCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH
Q ss_conf             92699972027688999999808988860998999917004-78867899999999837998999342653022204754
Q gi|254780659|r    1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENS-AGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFS   79 (274)
Q Consensus         1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENa-a~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i   79 (274)
                      |||||+=  .|...|.-..+.|-+  +....++-|--+--. ..|.++.+...+-|.+.|+|.=  | |.=.|-+-.++ 
T Consensus         3 ~kVLFVC--~gN~cRSpmAE~l~~--~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~--~-~~~k~i~~~~~-   74 (139)
T COG0394           3 MKVLFVC--TGNICRSPMAEALLR--HLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS--G-HRSKQLTEEDF-   74 (139)
T ss_pred             CEEEEEE--CCCCCCCHHHHHHHH--HHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCC--C-CCCCCCCHHHH-
T ss_conf             6699994--997121699999999--75537869987865677889999789999998599967--8-76774765457-


Q ss_pred             HHCCCEEE
Q ss_conf             21893897
Q gi|254780659|r   80 QRHCKFLR   87 (274)
Q Consensus        80 ~~~~~ilR   87 (274)
                      ++.+.||-
T Consensus        75 ~~~DlIit   82 (139)
T COG0394          75 DEFDLIIT   82 (139)
T ss_pred             HHCCEEEE
T ss_conf             44899999


No 247
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.39  E-value=61  Score=13.97  Aligned_cols=52  Identities=13%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHC-CCEEEECCCC
Q ss_conf             478867899999999837998999342653022204754218-9389750079
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRH-CKFLRPANYP   92 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~-~~ilRP~N~p   92 (274)
                      +++|.||...+++.+-+.|++|+-.++--..++.+.+..++. .+.+.+++..
T Consensus        16 aa~g~Gig~aia~~~~~~Ga~V~i~~~~~~~~~~~~~l~~~~g~~~~~~~Dvt   68 (260)
T PRK06603         16 IANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVT   68 (260)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             99966899999999998799999966867999999999984383769865799


No 248
>TIGR01873 cas_CT1978 CRISPR-associated protein Cas2; InterPro: IPR010152   This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element..
Probab=21.32  E-value=64  Score=13.87  Aligned_cols=42  Identities=24%  Similarity=0.446  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHHHH---HHHCCCCEEEECCEECCCC-CCCC
Q ss_conf             997202768899999980898---8860998999917004788-6789
Q gi|254780659|r    5 FLGDIVGKTGRSIVYEMLPRL---IRDFQLDFVIANGENSAGG-FGIT   48 (274)
Q Consensus         5 fiGDIvG~~Gr~~v~~~Lp~l---~~~~~~DfvIaNgENaa~G-~Git   48 (274)
                      |+|-.+-+.=|+-|-+.|.++   .+|-  ..||+|+.|.+.| |++.
T Consensus        29 Yv~P~~~~~vr~~iwd~l~q~yG~~~~g--~~v~~wa~~t~~GG~~~~   74 (91)
T TIGR01873        29 YVGPRVSAKVRERIWDELAQLYGCLEKG--SIVITWASNTESGGFEFA   74 (91)
T ss_pred             EECCCCCHHHHHHHHHHHCCCCCCCCCC--CEEEEECCCCCCCCCEEE
T ss_conf             2357626367888888651222534758--778874487888671233


No 249
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation  of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=21.21  E-value=64  Score=13.85  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=13.1

Q ss_pred             CHHHCCCCCHHHHHHHHHHCC
Q ss_conf             712103547467898885168
Q gi|254780659|r  205 DYNSSIGLDKEEPINRFITQI  225 (274)
Q Consensus       205 ~~~SVIG~~~~~~i~rf~t~~  225 (274)
                      +.+..||..++..++.++..+
T Consensus        89 ~~~~~iG~~pe~~l~~~l~aL  109 (142)
T cd02950          89 EEGQSIGLQPKQVLAQNLDAL  109 (142)
T ss_pred             EEEEECCCCCHHHHHHHHHHH
T ss_conf             910353769889999999999


No 250
>PRK07831 short chain dehydrogenase; Provisional
Probab=21.12  E-value=64  Score=13.84  Aligned_cols=180  Identities=17%  Similarity=0.121  Sum_probs=85.5

Q ss_pred             CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC---CE-EEECCCCCCCCCCCE--EEEECCCCCEEEEEEE
Q ss_conf             88678999999998379989993426530222047542189---38-975007988875407--9998489928999996
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC---KF-LRPANYPPNTPGNGS--GLYCAKNGSNVLVANI  116 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~---~i-lRP~N~p~~~PG~G~--~i~~~~~g~ki~Vinl  116 (274)
                      .|.||...+++.|.+.|.+|+-.+.+.=...|...-+.++.   ++ .-+++.....--.-.  .+...-++.-+.|-| 
T Consensus        25 sg~GIG~a~a~~la~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNN-  103 (261)
T PRK07831         25 AGTGIGSATARRALEEGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVERLGRLDVLVNN-  103 (261)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC-
T ss_conf             9647899999999987998999808777789999999984387728999756899999999999999982998699988-


Q ss_pred             EHHHCCCC---------------CCCCHHHHHHHHHHHCCCCCCCCEEE-E-ECCCCC--------HHHHHH--------
Q ss_conf             00005883---------------32598999999986341368998899-9-625762--------289999--------
Q gi|254780659|r  117 MGRVFMNP---------------LLDDPFRTADKILATCPLKEQADVIV-F-DFHAET--------TSEKQC--------  163 (274)
Q Consensus       117 ~Gr~fM~~---------------~~d~PF~~~d~~l~~~~~~~~~~~i~-V-DfHaEa--------TSEK~A--------  163 (274)
                      -|.....+               .+..+|.+...+++....+..--.|+ + -..+..        .+-|-|        
T Consensus       104 AG~~~~~~~~e~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~gG~IinisS~~~~~~~~~~~~Y~asKaav~~lTk~l  183 (261)
T PRK07831        104 AGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRAAPHGGVIVNNASVLGWRAQHSQAHYAAAKAGVMALTRCS  183 (261)
T ss_pred             CCCCCCCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             86689988144999999998613215199999999999997699978984544030567887436899999999999999


Q ss_pred             -HHHHHCC-CEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCC----------
Q ss_conf             -9976089-5779980697624654564036728984056013712103547467898885168865411----------
Q gi|254780659|r  164 -FAHFVDS-RASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFV----------  231 (274)
Q Consensus       164 -~g~~lDG-rVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~----------  231 (274)
                       .-|--.| ||.+|.-.-+                .|+  |.   +   ...+++.++++....|..|+-          
T Consensus       184 A~e~a~~gIrVNaI~PG~i----------------~t~--~~---~---~~~~~~~~~~~~~~~p~gR~g~pediA~~v~  239 (261)
T PRK07831        184 AIEAAEYGVRINAVAPSIA----------------RHK--FL---K---KVTSAELLDRLASGEAFGRAAEPWEVAAVIA  239 (261)
T ss_pred             HHHHHHCCCEEEEEECCCC----------------CCC--HH---H---CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             9998452908999955876----------------770--22---2---1399999999870799789759999999999


Q ss_pred             --CCCCCEEEEEEEEEEE
Q ss_conf             --1578719999999984
Q gi|254780659|r  232 --IANGPATLCGICAEIS  247 (274)
Q Consensus       232 --~a~g~~~l~gv~ieid  247 (274)
                        .++.-.-+.|.++.+|
T Consensus       240 fLaSd~s~~iTGq~i~V~  257 (261)
T PRK07831        240 FLASDYSSYLTGEVVSVS  257 (261)
T ss_pred             HHHCHHHCCCCCEEEEEC
T ss_conf             995815469757388988


No 251
>PRK12743 acetoin dehydrogenase; Provisional
Probab=21.08  E-value=46  Score=14.76  Aligned_cols=95  Identities=19%  Similarity=0.143  Sum_probs=47.3

Q ss_pred             CCCCCCHHHHHHHHHCCCCEE-EECHHHHCCCCHHHHHHHCCC--EEEECCCCCCCCCCCE--EEEECCCCCEEEEEEEE
Q ss_conf             886789999999983799899-934265302220475421893--8975007988875407--99984899289999960
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVI-TTGNHVWDKREALVFSQRHCK--FLRPANYPPNTPGNGS--GLYCAKNGSNVLVANIM  117 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei~~~i~~~~~--ilRP~N~p~~~PG~G~--~i~~~~~g~ki~Vinl~  117 (274)
                      ++.||.+.++..|.+.|.+|+ +....-=.-++..+.+++...  ....++.....--+-.  .+.+.-++.-+ ++|--
T Consensus        10 gs~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iDi-lVNnA   88 (253)
T PRK12743         10 SDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVVSHGVRAEIVHLDLSNLPEGAQAIEKLIQRLGRLDV-LVNNA   88 (253)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCE-EEECC
T ss_conf             58899999999999879989997489979999999999945991899990489999999999999998199989-99899


Q ss_pred             HHHCCCCCCCCHHHHHHHHHH
Q ss_conf             000588332598999999986
Q gi|254780659|r  118 GRVFMNPLLDDPFRTADKILA  138 (274)
Q Consensus       118 Gr~fM~~~~d~PF~~~d~~l~  138 (274)
                      |-....|..|.+....+++++
T Consensus        89 G~~~~~~~~~~~~~~w~~~~~  109 (253)
T PRK12743         89 GAMTKAPFLDMAFDEWRKIFT  109 (253)
T ss_pred             CCCCCCCCHHCCHHHHHHHHH
T ss_conf             899999800299999999999


No 252
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=21.07  E-value=43  Score=14.96  Aligned_cols=39  Identities=28%  Similarity=0.488  Sum_probs=25.7

Q ss_pred             CCCHHHHHHHHHHH-CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             25989999999863-413689988999625762289999997608957799806
Q gi|254780659|r  126 LDDPFRTADKILAT-CPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGT  178 (274)
Q Consensus       126 ~d~PF~~~d~~l~~-~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGT  178 (274)
                      +|--|..+-.++-+ +|              -+--||.||.||.||-..--.|-
T Consensus         7 idktftv~ad~~~k~~p--------------~~~~~k~af~yyr~GmsaQs~Ge   46 (165)
T CHL00033          7 IDKTFTIVADILLKILP--------------TTSGEKEAFTYYRDGMSAQSEGE   46 (165)
T ss_pred             HHHHHHHHHHHHHHHCC--------------CCCCHHHHHHHHHCCCHHHCCCC
T ss_conf             34578999988999808--------------88422889999981510101353


No 253
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.00  E-value=65  Score=13.83  Aligned_cols=53  Identities=15%  Similarity=0.063  Sum_probs=32.8

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC-CEEEECCCCC
Q ss_conf             4788678999999998379989993426530222047542189-3897500798
Q gi|254780659|r   41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC-KFLRPANYPP   93 (274)
Q Consensus        41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~-~ilRP~N~p~   93 (274)
                      +++|.||...+++.|.+.|++|+-.+.+-=.+....++..+.. .+.-+++...
T Consensus        14 aa~~~GiG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~   67 (262)
T PRK07984         14 VASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE   67 (262)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             999725999999999987999999827778999999999754982899888999


No 254
>KOG1151 consensus
Probab=20.95  E-value=24  Score=16.62  Aligned_cols=51  Identities=29%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             HCCCCEE----EEECCCC----CC-CHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf             4036728----9840560----13-71210354746789888516886541115787199
Q gi|254780659|r  189 ILDGGTG----YITDLGM----CG-DYNSSIGLDKEEPINRFITQIPRNRFVIANGPATL  239 (274)
Q Consensus       189 ILp~GTa----yiTDvGM----tG-~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l  239 (274)
                      +|.+|||    -|||-|.    -| +|+||.||+--.--.--.-.+|-.-|.|.+.+..+
T Consensus       602 LLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKI  661 (775)
T KOG1151         602 LLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKI  661 (775)
T ss_pred             EEECCCCCCEEEEECCCHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCEEECCCCCCCC
T ss_conf             985376334167630422442157765753440221256740464483015447889855


No 255
>PRK09620 hypothetical protein; Provisional
Probab=20.62  E-value=66  Score=13.78  Aligned_cols=84  Identities=14%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEECCCCCHHH-----HHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC
Q ss_conf             999999863413689988999625762289-----999997608957799806976246545640367289840560137
Q gi|254780659|r  131 RTADKILATCPLKEQADVIVFDFHAETTSE-----KQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD  205 (274)
Q Consensus       131 ~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE-----K~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~  205 (274)
                      ....++|+++.. ...+.++|-|-+|+..+     ..|-.-....+..+|+--..+.--+|.     ..+|+-+-.  |.
T Consensus       130 ~~tpdIl~~i~~-~~~~~~lVGFkaEt~~~~e~Li~~A~~kl~~k~~D~ivAN~~~~~~~~~-----~~~~ii~~d--~~  201 (229)
T PRK09620        130 QKAPKVLKQIKQ-WDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPHSLYSRG-----AMHYVIGQD--GK  201 (229)
T ss_pred             CCCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCC-----CEEEEECCC--CC
T ss_conf             257799999872-3899869999837889678999999999997699999984876657898-----659999289--94


Q ss_pred             HHHCCCCCHHHHHHHHHHC
Q ss_conf             1210354746789888516
Q gi|254780659|r  206 YNSSIGLDKEEPINRFITQ  224 (274)
Q Consensus       206 ~~SVIG~~~~~~i~rf~t~  224 (274)
                      ..  .-+.|+++-++.+..
T Consensus       202 ~~--~~~sK~eiA~~I~~~  218 (229)
T PRK09620        202 GQ--LCNGKDETAKEIVKR  218 (229)
T ss_pred             EE--CCCCHHHHHHHHHHH
T ss_conf             76--278999999999999


No 256
>pfam03314 DUF273 Protein of unknown function, DUF273.
Probab=20.61  E-value=20  Score=17.16  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=28.4

Q ss_pred             EEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf             799806976246545640367289840560137121
Q gi|254780659|r  173 SLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNS  208 (274)
Q Consensus       173 saVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~S  208 (274)
                      -+++|--|..+  -.|||++||+..-|.=.|.+..|
T Consensus       161 r~i~g~~~~f~--kirIlkKGtgWaRDgWLT~s~W~  194 (222)
T pfam03314       161 RAIFGASTDFG--KVRILKKGTGWARDGWLTSSVWS  194 (222)
T ss_pred             HHHHCCCCCCC--EEEEEECCCCEEECCCCCCCCCC
T ss_conf             99845235456--06886357750103421156317


No 257
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=20.61  E-value=66  Score=13.77  Aligned_cols=43  Identities=19%  Similarity=0.286  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             99999808988860998999917004788678999999998379989993
Q gi|254780659|r   16 SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITT   65 (274)
Q Consensus        16 ~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~   65 (274)
                      ..+.+....+|++.++-..+.-      | =++.+.+++|.++|||.+..
T Consensus       118 ~~i~~~v~~Vk~~~~le~c~sl------G-~l~~eq~~~L~~aGvd~ynh  160 (335)
T COG0502         118 EEVVEAIKAVKEELGLEVCASL------G-MLTEEQAEKLADAGVDRYNH  160 (335)
T ss_pred             HHHHHHHHHHHHHCCCHHHHCC------C-CCCHHHHHHHHHCCHHHEEC
T ss_conf             9999999999984692864025------8-79999999999718113303


No 258
>TIGR00504 pyro_pdase pyrrolidone-carboxylate peptidase; InterPro: IPR000816   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad .    This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens.    Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis.
Probab=20.48  E-value=66  Score=13.76  Aligned_cols=50  Identities=22%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             ECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHH-HHHHHHHCC
Q ss_conf             2027688999999808988860998999917004788678999-999998379
Q gi|254780659|r    8 DIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEK-IFCEMMETG   59 (274)
Q Consensus         8 DIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~-~~~~l~~~G   59 (274)
                      .++=-.=++++ +.|.++.++++||.||+=|+- -|-.-||.+ .|..+-+++
T Consensus        39 ~~~P~~F~~A~-~~l~~~i~~~~P~~vI~~G~~-PGR~~IsvERvA~N~~DAR   89 (220)
T TIGR00504        39 RILPVAFKEAL-EALRQAIDEVEPDIVIALGLA-PGRSQISVERVAINLNDAR   89 (220)
T ss_pred             EECCHHHHHHH-HHHHHHHHHCCCCEEEEECCC-CCCCCCCHHHHHHHHHHHC
T ss_conf             53552579999-999999985095448851576-7987650888877357620


No 259
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=20.45  E-value=66  Score=13.75  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             HHHHHCCCCEEEECCEEC-------CCCCCCC--------HHHHHHHHHCCCCEEEECHHH
Q ss_conf             988860998999917004-------7886789--------999999983799899934265
Q gi|254780659|r   24 RLIRDFQLDFVIANGENS-------AGGFGIT--------EKIFCEMMETGIDVITTGNHV   69 (274)
Q Consensus        24 ~l~~~~~~DfvIaNgENa-------a~G~Git--------~~~~~~l~~~GvDviT~GNH~   69 (274)
                      ..+++-+.-+||..+--.       .+..||.        +++++.+.+.|.-++.-=+|.
T Consensus        42 y~~~rag~Glii~~~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~avH~~Ga~i~~QL~H~  102 (362)
T PRK10605         42 YYRQRASAGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAEGGHIAVQLWHT  102 (362)
T ss_pred             HHHHHCCCCEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             9998678888998145888643678998865899999999999999996599348860037


No 260
>PRK12939 short chain dehydrogenase; Provisional
Probab=20.31  E-value=65  Score=13.82  Aligned_cols=107  Identities=12%  Similarity=0.027  Sum_probs=52.8

Q ss_pred             CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCC--EEEECCCCCCCC-CCCEEEEECCCCCEEEEEEEEHH
Q ss_conf             886789999999983799899934265302220475421893--897500798887-54079998489928999996000
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCK--FLRPANYPPNTP-GNGSGLYCAKNGSNVLVANIMGR  119 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~--ilRP~N~p~~~P-G~G~~i~~~~~g~ki~Vinl~Gr  119 (274)
                      ++.||...+++.|.+.|.+|+-.+...=+-++..+.+.+...  ..-+++.....- =+-......+-|+-=.++|--|.
T Consensus        15 gs~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLVNNAG~   94 (250)
T PRK12939         15 AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGI   94 (250)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             36689999999999879999999698899999999999559909999924899999999999999974999799988778


Q ss_pred             HCCCCC---------------CCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             058833---------------259899999998634136899889
Q gi|254780659|r  120 VFMNPL---------------LDDPFRTADKILATCPLKEQADVI  149 (274)
Q Consensus       120 ~fM~~~---------------~d~PF~~~d~~l~~~~~~~~~~~i  149 (274)
                      ....|.               +..||.....+++..+....-.+|
T Consensus        95 ~~~~~~~~~~~e~~~~~~~iNl~~~~~~~k~~~~~m~~~~~G~II  139 (250)
T PRK12939         95 TNSKSATELDIDTWDAVMNVNVRGTFLMSRAALPHLRDSGRGRIV  139 (250)
T ss_pred             CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999990349999999999998299999999999999984993799


No 261
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=20.28  E-value=67  Score=13.73  Aligned_cols=190  Identities=11%  Similarity=0.009  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECC
Q ss_conf             76889999998089888609989999170047886789999999983799899934265302220475421893897500
Q gi|254780659|r   11 GKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPAN   90 (274)
Q Consensus        11 G~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N   90 (274)
                      ..|--.-+.+.+.+.-++.+.+.++.|.+|...-   -.+..+.|.+.+||.+-...+..+...+..+....|-++-  |
T Consensus        10 ~npf~~~~~~~i~~~~~~~Gy~l~l~~s~~~~~~---e~~~l~~l~~~~vdGiIi~~~~~~~~~i~~~~~~~pvV~~--~   84 (260)
T cd06286          10 NHPYFSQLVDGIEKAALKHGYKVVLLQTNYDKEK---ELEYLELLKTKQVDGLILCSRENDWEVIEPYTKYGPIVLC--E   84 (260)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH---HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEE--E
T ss_conf             7889999999999999986998999989999899---9999999984799999993687998999999864999999--5


Q ss_pred             CCCCCCCCCEEEEE-------------CCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             79888754079998-------------48992899999600005883325989999999863413689988999625762
Q gi|254780659|r   91 YPPNTPGNGSGLYC-------------AKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAET  157 (274)
Q Consensus        91 ~p~~~PG~G~~i~~-------------~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa  157 (274)
                      -. ..++-.+...+             ..+-++++.+  .|..... ....=...+.+.+++..+..+.+.++-+-+...
T Consensus        85 ~~-~~~~~~~V~~Dn~~~~~~~~~~L~~~G~~~i~~i--~~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~  160 (260)
T cd06286          85 EY-DSKNISSVYIDHYEAFYEALKYLIQKGYRKIAYC--IGRKKSL-NSQSRKKAYKDALEEYGLTPDEEWIFEGCFTIE  160 (260)
T ss_pred             CC-CCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEE--ECCCCCH-HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH
T ss_conf             77-8899998997869999999999997599739999--3898870-499999999999997799977303644652066


Q ss_pred             HHHHHHHHHH-HCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCH-HHCCCCCHHH
Q ss_conf             2899999976-089577998069762465456403672898405601371-2103547467
Q gi|254780659|r  158 TSEKQCFAHF-VDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDY-NSSIGLDKEE  216 (274)
Q Consensus       158 TSEK~A~g~~-lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~-~SVIG~~~~~  216 (274)
                      .+++.+--+. ..-+.+|++-+.      |..-+ +--.++.+.|..=|- =||+|.+-..
T Consensus       161 ~g~~~~~~~~~~~~~p~ai~~~n------d~~A~-g~~~al~~~g~~vP~di~vigfdd~~  214 (260)
T cd06286         161 DGERIGHQLLKMKDRPDAIFTGS------DEVAA-GIITEAKKQGIRVPEDLAIIGFDNQP  214 (260)
T ss_pred             HHHHHHHHHHHCCCCCCEEEECC------HHHHH-HHHHHHHHCCCCCCCCEEEEEECCHH
T ss_conf             79999999984499987367368------99999-99999997299999976999989849


No 262
>TIGR00250 TIGR00250 conserved hypothetical protein TIGR00250; InterPro: IPR005227   Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VIIcolicin E and RusA (IPR008822 from INTERPRO):  The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined.  The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex.   Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold.     Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes.   This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes.   The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma urealyticum (Q9PQY7 from SWISSPROT, ). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase . This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC . ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0004518 nuclease activity, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus.
Probab=20.25  E-value=67  Score=13.72  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=16.0

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEECCC-------CCHHHHHHHHHHHCCC
Q ss_conf             9999998634136899889996257-------6228999999760895
Q gi|254780659|r  131 RTADKILATCPLKEQADVIVFDFHA-------ETTSEKQCFAHFVDSR  171 (274)
Q Consensus       131 ~~~d~~l~~~~~~~~~~~i~VDfHa-------EaTSEK~A~g~~lDGr  171 (274)
                      ..++++++++    ..|.|+|=|=-       .-|..-+-||.-+.+|
T Consensus        41 ~~i~~l~ke~----~~d~~vvGlP~nM~Gt~g~~~~~~~kFA~r~~~~   84 (133)
T TIGR00250        41 SRIEELLKEW----KVDKIVVGLPLNMDGTVGPLTKRAQKFAKRLEGR   84 (133)
T ss_pred             HHHHHHHHHC----CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999987315----8897886178787887250268889999886554


No 263
>PRK13132 consensus
Probab=20.21  E-value=67  Score=13.72  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=68.0

Q ss_pred             CCCHHHHHHHHHCCCCEEEECHHH----HC-----------------CCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEE
Q ss_conf             789999999983799899934265----30-----------------222047542189389750079888754079998
Q gi|254780659|r   46 GITEKIFCEMMETGIDVITTGNHV----WD-----------------KREALVFSQRHCKFLRPANYPPNTPGNGSGLYC  104 (274)
Q Consensus        46 Git~~~~~~l~~~GvDviT~GNH~----wd-----------------~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~  104 (274)
                      --|.+..+.|-++|+|+|-.|=--    -|                 -+++++.+.+-    |                 
T Consensus        25 e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~i----r-----------------   83 (246)
T PRK13132         25 ETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARV----K-----------------   83 (246)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----C-----------------
T ss_conf             9999999999974999899789888876558999999999987799899999999975----3-----------------


Q ss_pred             CCCCCEEEEEEEEHHHCCCCCCCCHHHH--HHHHHHHCCCCCCCC-EEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             4899289999960000588332598999--999986341368998-8999625762289999997608957799806976
Q gi|254780659|r  105 AKNGSNVLVANIMGRVFMNPLLDDPFRT--ADKILATCPLKEQAD-VIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTH  181 (274)
Q Consensus       105 ~~~g~ki~Vinl~Gr~fM~~~~d~PF~~--~d~~l~~~~~~~~~~-~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTH  181 (274)
                        ....        -++|. + -||+..  .+++++++.. ...| .|++|+--|-..|=...+.-.+-...-.+-    
T Consensus        84 --~~~p--------ivlM~-Y-~N~i~~~G~e~F~~~~~~-~GvdGlIipDLP~ee~~~~~~~~~~~~i~~I~lva----  146 (246)
T PRK13132         84 --TKKA--------LVFLV-Y-YNLIFAYGLEKFVKKAKE-LGISGLIVPDLPFEESEELIKECEKYNIALIPLIS----  146 (246)
T ss_pred             --CCCC--------EEEEE-E-CHHHHHCCHHHHHHHHHH-CCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC----
T ss_conf             --6999--------79996-0-108877299999999987-69985775799978989999999985997014425----


Q ss_pred             CCCCHHHH---CC--CCEEE-EECCCCCCCHHHCCCCCHHHHHHHH
Q ss_conf             24654564---03--67289-8405601371210354746789888
Q gi|254780659|r  182 IPTADAQI---LD--GGTGY-ITDLGMCGDYNSSIGLDKEEPINRF  221 (274)
Q Consensus       182 V~TaD~rI---Lp--~GTay-iTDvGMtG~~~SVIG~~~~~~i~rf  221 (274)
                       ||.++|+   +.  .|=-| ++=.|-||..... --.-...++|.
T Consensus       147 -PTs~~R~~~i~~~s~gfiY~vs~~GvTG~~~~~-~~~~~~~i~~i  190 (246)
T PRK13132        147 -VTSPKRAKKILKHAKGFIYALGSIGVTGTKSVE-EARLKDKVKEI  190 (246)
T ss_pred             -CCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-HHHHHHHHHHH
T ss_conf             -797899999995489827997535677776663-68899999999


No 264
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold.  As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=20.17  E-value=67  Score=13.71  Aligned_cols=184  Identities=13%  Similarity=0.131  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEE--ECHHHHCCCCHHHHHHHCC--CEEE
Q ss_conf             68899999980898886099899991700478867899999999837998999--3426530222047542189--3897
Q gi|254780659|r   12 KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVIT--TGNHVWDKREALVFSQRHC--KFLR   87 (274)
Q Consensus        12 ~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT--~GNH~wd~kei~~~i~~~~--~ilR   87 (274)
                      .|--..+.+.+...-++++.+++|.|.++...   .-.+..+.|.+.+||.+-  .++..  ..+.+..+.+..  -++-
T Consensus        11 npf~~~~~~gie~~~~~~Gy~~~i~~t~~~~~---~e~~~i~~l~~~~vdGiIi~~~~~~--~~~~~~~l~~~~iPvV~~   85 (266)
T cd06282          11 NPVFAECVQGIQEEARAAGYSLLLATTDYDAE---READAVETLLRQRVDGLILTVADAA--TSPALDLLDAERVPYVLA   85 (266)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEEECCCCC--CHHHHHHHHHCCCCEEEE
T ss_conf             88999999999999998799899997999979---9999999999659987999637877--559999998559978999


Q ss_pred             ECCCCCCCCCCCEEE-------------EECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             500798887540799-------------9848992899999600005883325989999999863413689988999625
Q gi|254780659|r   88 PANYPPNTPGNGSGL-------------YCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFH  154 (274)
Q Consensus        88 P~N~p~~~PG~G~~i-------------~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfH  154 (274)
                       -+-+  .++.-+..             +-.++-++++.+.  |...-......=.....+.+++..+. ....+.++++
T Consensus        86 -~~~~--~~~~~~V~~Dn~~~~~~~~~~L~~~G~~~i~~i~--~~~~~~~~~~~R~~Gf~~a~~~~~~~-~~~~~~~~~~  159 (266)
T cd06282          86 -YNDP--QPGRPSVSVDNRAAARDVAQALAALGHRRIAMLA--GRLAASDRARQRYAGYRAAMRAAGLA-PLPPVEIPFN  159 (266)
T ss_pred             -ECCC--CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCHHHHHHHHHHHHHHHHCCCC-CCCEEEECCC
T ss_conf             -5047--8999989988799999999999973995699997--77888868999999999999986999-7617993487


Q ss_pred             CCCHHHHHHHHHHH--CCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC-HHHCCCCCHH
Q ss_conf             76228999999760--8957799806976246545640367289840560137-1210354746
Q gi|254780659|r  155 AETTSEKQCFAHFV--DSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKE  215 (274)
Q Consensus       155 aEaTSEK~A~g~~l--DGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~-~~SVIG~~~~  215 (274)
                      .+...+  ++..+|  .-+.+||+-+.--+.-.       --.++.+.|..=| -=||+|.|-.
T Consensus       160 ~~~~~~--~~~~~l~~~~~~~ai~~~nD~~A~g-------~l~al~~~g~~vP~disIigfd~~  214 (266)
T cd06282         160 TAALPS--ALLALLTAHPAPTAIFCSNDLLALA-------VIRALRRLGLRVPDDLSVVGFDGI  214 (266)
T ss_pred             HHHHHH--HHHHHHHCCCCCCEEEECCCHHHHH-------HHHHHHHCCCCCCCCEEEEEECCH
T ss_conf             268999--9999983799984798538889999-------999999849999998499998970


No 265
>PRK05717 oxidoreductase; Validated
Probab=20.06  E-value=68  Score=13.70  Aligned_cols=49  Identities=10%  Similarity=0.047  Sum_probs=32.1

Q ss_pred             CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCC
Q ss_conf             88678999999998379989993426530222047542189389750079
Q gi|254780659|r   43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP   92 (274)
Q Consensus        43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p   92 (274)
                      ++.||...++++|.+.|.+|+-.+...=.-.++...+.+.. ...+++..
T Consensus        18 ~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~-~~~~~Dvt   66 (255)
T PRK05717         18 AARGIGLGIAAWLIAEGWQVVLADLDRERGAKVAKALGENA-WFIAMDVA   66 (255)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCE-EEEEEECC
T ss_conf             78889999999999879989999698899999999848975-89993079


No 266
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=20.06  E-value=68  Score=13.70  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=28.6

Q ss_pred             HHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf             8860998999917004788678999999998379989993426530
Q gi|254780659|r   26 IRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD   71 (274)
Q Consensus        26 ~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd   71 (274)
                      .-..+||+||+...      +-..+..++|.++|+.|+.+--++++
T Consensus        73 IlaL~PDLVia~~~------~~~~~~~~~L~~~GI~v~~~~~~sl~  112 (265)
T PRK03379         73 IVALKPDLVLAWRG------GNAERQVDQLASLGIKVMWVDATSIE  112 (265)
T ss_pred             HHHHCCCEEEEECC------CCCHHHHHHHHHCCCEEEECCCCCHH
T ss_conf             99639998999568------89589999998169758835999999


Done!