HHsearch alignment for GI: 254780659 and conserved domain: pfam09587
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=99.09 E-value=1.7e-08 Score=76.00 Aligned_cols=181 Identities=21% Similarity=0.219 Sum_probs=110.0
Q ss_pred EEEEEEECCCHHHHHHH--------HHHHHHHHHHC-CCCEEEECCEECCCCC----------CCCHHHHHHHHHCCCCE
Q ss_conf 26999720276889999--------99808988860-9989999170047886----------78999999998379989
Q gi|254780659|r 2 RLLFLGDIVGKTGRSIV--------YEMLPRLIRDF-QLDFVIANGENSAGGF----------GITEKIFCEMMETGIDV 62 (274)
Q Consensus 2 kiLfiGDIvG~~Gr~~v--------~~~Lp~l~~~~-~~DfvIaNgENaa~G~----------Git~~~~~~l~~~GvDv 62 (274)
T Consensus 1 tl~f~GDi~--l~~~~~~~~~~~d~~~~~~~v~~~l~~aD~~i~NlE~~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~ 78 (237)
T pfam09587 1 TLAFVGDVM--LGRGLDQIAPPYDFDYPFADVKPLLRAADLAIGNLETPITDSGEPYSGKPAFRAPPENAEALKAAGFDV 78 (237)
T ss_pred CEEEEEEEC--CCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCE
T ss_conf 969986461--688456651048807889999999861998699811365488987899815779999999999849999
Q ss_pred EEECH-HHHCCCC-----HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC--------CCCC
Q ss_conf 99342-6530222-----04754218938975007988875407999848992899999600005883--------3259
Q gi|254780659|r 63 ITTGN-HVWDKRE-----ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNP--------LLDD 128 (274)
Q Consensus 63 iT~GN-H~wd~ke-----i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~--------~~d~ 128 (274)
T Consensus 79 vslANNH~~D~G~~G~~~T~~~L~~~g-i~~~G~g~~~~~a~~p~~~~-~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~ 156 (237)
T pfam09587 79 VSLANNHSLDYGEEGLLDTLDALDRAG-IAHAGAGRNLEEARRPAILE-VNGIRIAFLAYTYGTNGWGAGPYRPGVNPLD 156 (237)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCHHHCCCCEEEE-ECCCEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 995776433257799999999999879-96058889946627808999-7993899999875878756788887557569
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC------CCHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHH
Q ss_conf 899999998634136899889996257------6228999999760-895779980697624654564
Q gi|254780659|r 129 PFRTADKILATCPLKEQADVIVFDFHA------ETTSEKQCFAHFV-DSRASLVVGTHTHIPTADAQI 189 (274)
Q Consensus 129 PF~~~d~~l~~~~~~~~~~~i~VDfHa------EaTSEK~A~g~~l-DGrVsaVvGTHTHV~TaD~rI 189 (274)
T Consensus 157 ~-~~i~~~i~~~--k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lidaGaDlIiGhHpHv~q~iE~y 221 (237)
T pfam09587 157 E-EKIKADIRRA--KKKADIVIVSLHWGVEYQYEPTPEQRELAHALIDAGADLVIGHHPHVLQPIEVY 221 (237)
T ss_pred H-HHHHHHHHHH--HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf 9-9999999987--507999999877566787699999999999999779999991899878874999