HHsearch results for GI: 254780659 and protein with PDBid: 1ii7_A
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=94.63 E-value=0.27 Score=27.88 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=90.7
Q ss_pred CEEEEEEECC-CHH-----H-----HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHH-------HHHHHHCCCCE
Q ss_conf 9269997202-768-----8-----9999998089888609989999170047886789999-------99998379989
Q gi|254780659|r 1 MRLLFLGDIV-GKT-----G-----RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKI-------FCEMMETGIDV 62 (274)
Q Consensus 1 MkiLfiGDIv-G~~-----G-----r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~-------~~~l~~~GvDv 62 (274)
||||-+.|+= |.+ - ++++++.+... .+.++|+||..|.---.+ -.+.+. .+.|.+.++.+
T Consensus 1 Mkilh~SD~HlG~~~~~~~~~~~~~~~~~~~~v~~a-~~~~vD~vli~GDlfd~~-~~~~~~~~~~~~~~~~l~~~~ipv 78 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIA-VQENVDFILIAGDLFHSS-RPSPGTLKKAIALLQIPKEHSIPV 78 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHH-HHTTCSEEEEESCSBSSS-SCCHHHHHHHHHHHHHHHTTTCCE
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 977999138888887784457999999999999999-873999999898878899-899999999999999998689959
Q ss_pred -EEECHHHHCC--CCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCC--CCCC-CHHHHHHHH
Q ss_conf -9934265302--220475421893897500798887540799984899289999960000588--3325-989999999
Q gi|254780659|r 63 -ITTGNHVWDK--REALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMN--PLLD-DPFRTADKI 136 (274)
Q Consensus 63 -iT~GNH~wd~--kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~--~~~d-~PF~~~d~~ 136 (274)
+..|||=... ....+++.....+-...+..... ...+............+......+... +... .-.......
T Consensus 79 ~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (333)
T 1ii7_A 79 FAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMRKEKV-ENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEI 157 (333)
T ss_dssp EEECCTTTCCSSSCCHHHHHHHTTSCEECEEESSCC-CSSSEEEEECTTSCEEEEEEETTEEEEEECCCCHHHHHSSTTH
T ss_pred EEECCCCCCHHCCHHHHHHHHHCCCEEEECCCCCCC-CCEEEECCCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf 996466662100035788898669648704555444-4405520223652157404667613422320046788999875
Q ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHH--------HHHCCCEEEEEECCCCCCCC----HHHHCCCCEEEEECCCCCC
Q ss_conf 86341368998899962576228999999--------76089577998069762465----4564036728984056013
Q gi|254780659|r 137 LATCPLKEQADVIVFDFHAETTSEKQCFA--------HFVDSRASLVVGTHTHIPTA----DAQILDGGTGYITDLGMCG 204 (274)
Q Consensus 137 l~~~~~~~~~~~i~VDfHaEaTSEK~A~g--------~~lDGrVsaVvGTHTHV~Ta----D~rILp~GTayiTDvGMtG 204 (274)
+... .......| +=+|.....-....+ -.+.-.+..|+-=|.|-+.. ...+.=-|+-++++.|=+|
T Consensus 158 ~~~~-~~~~~~~i-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~i~y~GS~~~~~f~e~~ 235 (333)
T 1ii7_A 158 LKRL-FRPTDNAI-LMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVVYPGSLERWDFGDYE 235 (333)
T ss_dssp HHHH-CCCCSSEE-EEEECCBHHHHHTTTCCCCSBCGGGSCTTCSEEEEESCSSCEEEEETTEEEEECCCSSCCSGGGCS
T ss_pred HHHC-CCCCCCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 4312-48877736-888631245556677643212210144468779727675873524399369985983122765236
Q ss_pred CHHHCCCC
Q ss_conf 71210354
Q gi|254780659|r 205 DYNSSIGL 212 (274)
Q Consensus 205 ~~~SVIG~ 212 (274)
...+..+.
T Consensus 236 ~~~~~~~~ 243 (333)
T 1ii7_A 236 VRYEWDGI 243 (333)
T ss_dssp EEEEECSS
T ss_pred CCCCEEEE
T ss_conf 66635999