Query gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 274 No_of_seqs 135 out of 850 Neff 4.4 Searched_HMMs 23785 Date Tue May 31 17:59:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780659.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1t71_A Phosphatase, conserved; 100.0 0 0 809.5 28.1 264 1-274 5-274 (281) 2 1t70_A Phosphatase; crystal, X 100.0 0 0 797.3 27.2 251 1-262 1-253 (255) 3 2z06_A Putative uncharacterize 100.0 0 0 796.7 27.6 250 1-262 1-250 (252) 4 3ive_A Nucleotidase; structura 98.9 1.6E-07 6.6E-12 68.2 16.3 180 2-186 8-240 (509) 5 2z1a_A 5'-nucleotidase; metal- 98.9 1.6E-07 6.8E-12 68.2 15.9 179 2-185 31-244 (552) 6 3gve_A YFKN protein; alpha-bet 98.9 1.6E-07 6.8E-12 68.2 14.8 184 2-188 13-258 (341) 7 1hp1_A 5'-nucleotidase; metall 98.8 2.7E-07 1.1E-11 66.8 15.6 182 1-185 9-233 (516) 8 3c9f_A 5'-nucleotidase; 2',3'- 98.8 1.7E-07 7.2E-12 68.0 13.2 187 2-192 17-249 (557) 9 3jyf_A 2',3'-cyclic nucleotide 98.7 6.2E-07 2.6E-11 64.4 12.4 185 1-188 9-251 (339) 10 2wdc_A SOXB, sulfur oxidation 98.6 4.1E-06 1.7E-10 59.1 15.6 167 14-185 103-292 (562) 11 1uf3_A Hypothetical protein TT 96.6 0.045 1.9E-06 32.9 11.7 183 1-201 6-205 (228) 12 1s3l_A Hypothetical protein MJ 96.5 0.053 2.2E-06 32.4 12.8 132 1-197 26-160 (190) 13 1ute_A Protein (II purple acid 95.7 0.13 5.3E-06 30.0 12.5 186 1-199 7-239 (313) 14 2q8u_A Exonuclease, putative; 94.8 0.24 1E-05 28.1 11.6 175 1-184 19-233 (336) 15 1ii7_A MRE11 nuclease; RAD50, 94.6 0.27 1.1E-05 27.9 11.3 207 1-212 1-243 (333) 16 1xzw_A Purple acid phosphatase 94.5 0.28 1.2E-05 27.7 10.9 194 2-208 128-366 (426) 17 1su1_A Hypothetical protein YF 94.3 0.13 5.3E-06 30.0 6.7 71 1-74 26-104 (208) 18 2yvt_A Hypothetical protein AQ 93.3 0.064 2.7E-06 31.9 3.7 70 1-73 6-104 (260) 19 2qjc_A Diadenosine tetraphosph 93.0 0.11 4.6E-06 30.4 4.5 66 1-70 19-84 (262) 20 2fli_A Ribulose-phosphate 3-ep 92.3 0.11 4.7E-06 30.3 3.9 58 126-191 70-130 (220) 21 2nxf_A Putative dimetal phosph 92.2 0.67 2.8E-05 25.3 11.6 73 1-74 6-103 (322) 22 3d03_A Phosphohydrolase; glyce 90.6 0.96 4E-05 24.3 13.3 185 1-203 1-216 (274) 23 2kkn_A Uncharacterized protein 90.2 0.8 3.4E-05 24.8 6.5 130 1-204 23-157 (178) 24 2iw0_A Chitin deacetylase; hyd 90.2 0.26 1.1E-05 27.9 4.0 130 18-154 56-206 (254) 25 2qfp_A Purple acid phosphatase 89.5 1.2 4.9E-05 23.7 12.0 194 2-208 121-359 (424) 26 2dfj_A Diadenosinetetraphospha 89.0 0.65 2.8E-05 25.4 5.2 67 1-70 1-68 (280) 27 3inp_A D-ribulose-phosphate 3- 88.7 0.59 2.5E-05 25.6 4.8 59 126-192 95-156 (246) 28 3ib7_A ICC protein; metallopho 87.5 1.6 6.7E-05 22.9 11.1 176 1-201 26-238 (330) 29 1rd5_A Tryptophan synthase alp 85.7 1.9 8E-05 22.3 6.1 48 18-66 5-52 (262) 30 1g5b_A Serine/threonine protei 85.6 1.3 5.3E-05 23.5 5.1 64 2-69 14-77 (221) 31 1nnw_A Hypothetical protein; s 85.0 2.1 8.9E-05 22.0 6.3 64 1-69 2-74 (252) 32 3ctl_A D-allulose-6-phosphate 84.7 1 4.2E-05 24.1 4.3 59 126-192 66-128 (231) 33 1h1y_A D-ribulose-5-phosphate 84.2 0.2 8.6E-06 28.6 0.5 53 126-185 73-129 (228) 34 1rpx_A Protein (ribulose-phosp 83.4 0.14 5.7E-06 29.8 -0.6 58 126-191 77-139 (230) 35 1tqj_A Ribulose-phosphate 3-ep 82.2 0.61 2.6E-05 25.5 2.3 58 126-191 71-133 (230) 36 1tqx_A D-ribulose-5-phosphate 81.5 2 8.3E-05 22.2 4.7 57 126-189 73-134 (227) 37 1z2w_A Vacuolar protein sortin 77.0 0.57 2.4E-05 25.8 0.8 140 1-209 11-152 (192) 38 2dc1_A L-aspartate dehydrogena 75.1 4.5 0.00019 19.9 6.8 87 1-97 1-117 (236) 39 2z2v_A Hypothetical protein PH 69.1 6.1 0.00026 19.1 6.4 58 1-66 17-108 (365) 40 2ip4_A PURD, phosphoribosylami 65.3 7.3 0.00031 18.6 6.2 79 20-103 51-155 (417) 41 2w3z_A Putative deacetylase; P 65.1 7.2 0.0003 18.6 4.2 50 19-75 123-173 (311) 42 3bio_A Oxidoreductase, GFO/IDH 62.6 8 0.00034 18.3 4.1 19 1-21 10-28 (304) 43 3khj_A Inosine-5-monophosphate 62.0 8.4 0.00035 18.2 6.0 42 17-66 132-173 (361) 44 2a22_A Vacuolar protein sortin 61.6 3.9 0.00016 20.3 2.3 147 3-208 28-175 (215) 45 3cu2_A Ribulose-5-phosphate 3- 61.4 8.6 0.00036 18.1 5.3 60 125-192 77-148 (237) 46 1j5p_A Aspartate dehydrogenase 59.7 3.8 0.00016 20.4 2.0 89 1-96 13-126 (253) 47 2c1i_A Peptidoglycan glcnac de 59.4 9.3 0.00039 17.9 5.1 50 19-75 252-301 (431) 48 1ujp_A Tryptophan synthase alp 56.0 11 0.00044 17.5 4.0 152 18-180 79-232 (271) 49 1qv9_A F420-dependent methylen 55.0 11 0.00046 17.4 6.0 111 15-152 49-184 (283) 50 3max_A HD2, histone deacetylas 54.8 11 0.00046 17.4 5.7 61 127-203 148-211 (367) 51 2w6r_A Imidazole glycerol phos 54.8 5.5 0.00023 19.4 2.1 68 4-79 47-116 (266) 52 1fs0_G ATP synthase gamma subu 54.5 3.6 0.00015 20.6 1.2 10 130-139 78-87 (230) 53 3f4w_A Putative hexulose 6 pho 52.9 12 0.0005 17.2 5.5 10 59-68 25-34 (211) 54 1qap_A Quinolinic acid phospho 52.5 12 0.00049 17.3 3.5 12 173-184 146-157 (296) 55 1yad_A Regulatory protein TENI 52.5 9.8 0.00041 17.7 3.1 31 51-81 34-64 (221) 56 2qr6_A IMP dehydrogenase/GMP r 51.7 12 0.00052 17.1 4.8 18 48-65 221-238 (393) 57 1c3p_A Protein (HDLP (histone 51.0 13 0.00053 17.0 6.0 70 146-224 160-238 (375) 58 1z7e_A Protein aRNA; rossmann 50.1 13 0.00055 16.9 4.7 84 1-92 1-85 (660) 59 3oee_G ATP synthase subunit ga 50.0 3.5 0.00015 20.6 0.5 13 127-139 89-101 (278) 60 2c71_A Glycoside hydrolase, fa 49.5 11 0.00047 17.4 3.0 54 16-76 18-72 (216) 61 2zru_A Isopentenyl-diphosphate 49.2 13 0.00057 16.8 5.8 22 48-69 200-221 (368) 62 3gr6_A Enoyl-[acyl-carrier-pro 48.5 7.7 0.00032 18.4 2.1 41 41-81 18-58 (260) 63 1geq_A Tryptophan synthase alp 48.2 14 0.00059 16.7 7.4 151 18-179 68-222 (248) 64 2j13_A Polysaccharide deacetyl 48.0 8.8 0.00037 18.0 2.3 51 19-76 71-121 (247) 65 3paj_A Nicotinate-nucleotide p 47.7 14 0.0006 16.7 3.6 16 12-27 32-47 (320) 66 2cc0_A Acetyl-xylan esterase; 47.6 13 0.00056 16.9 3.2 52 18-77 19-71 (195) 67 2ck3_G ATP synthase gamma chai 46.5 4 0.00017 20.3 0.3 18 198-215 73-90 (272) 68 2xok_G ATP synthase subunit ga 46.1 4.3 0.00018 20.0 0.5 16 194-209 105-123 (311) 69 2r8r_A Sensor protein; KDPD, P 45.6 11 0.00047 17.3 2.6 27 54-80 29-55 (228) 70 2bln_A Protein YFBG; transfera 45.2 16 0.00065 16.4 4.5 85 1-93 1-86 (305) 71 1xi3_A Thiamine phosphate pyro 45.1 16 0.00066 16.4 5.5 52 24-81 10-61 (215) 72 1ulu_A Enoyl-acyl carrier prot 45.0 12 0.00051 17.2 2.6 52 41-92 16-68 (261) 73 1qpo_A Quinolinate acid phosph 42.4 10 0.00043 17.6 1.9 18 168-185 127-144 (284) 74 2qe7_G ATP synthase subunit ga 42.0 4.1 0.00017 20.2 -0.2 15 196-210 81-95 (286) 75 1ny1_A Probable polysaccharide 41.9 15 0.00062 16.6 2.7 52 19-77 59-110 (240) 76 3kts_A Glycerol uptake operon 41.6 14 0.00057 16.8 2.5 31 41-71 154-185 (192) 77 1j6u_A UDP-N-acetylmuramate-al 40.2 19 0.00078 15.9 6.0 21 1-23 13-33 (469) 78 1x1o_A Nicotinate-nucleotide p 40.1 16 0.00069 16.3 2.7 14 214-227 182-195 (286) 79 3ceu_A Thiamine phosphate pyro 39.4 4.6 0.00019 19.9 -0.2 33 49-81 16-48 (210) 80 1ccw_A Protein (glutamate muta 39.2 19 0.0008 15.8 4.2 35 33-68 6-40 (137) 81 2h7i_A Enoyl-[acyl-carrier-pro 39.0 15 0.00064 16.5 2.4 36 41-79 15-50 (269) 82 2tps_A Protein (thiamin phosph 39.0 14 0.00057 16.8 2.1 43 25-71 14-56 (227) 83 1g57_A DHBP synthase, 3,4-dihy 38.7 20 0.00082 15.8 4.2 55 119-176 3-70 (217) 84 2cou_A ECT2 protein; BRCT doma 38.4 5.4 0.00023 19.4 -0.0 87 2-99 17-109 (109) 85 1o13_A Probable NIFB protein; 38.4 20 0.00083 15.8 3.8 12 214-225 108-119 (136) 86 1j9j_A Stationary phase surviV 37.5 20 0.00085 15.7 3.1 47 1-50 1-48 (247) 87 1vkz_A Phosphoribosylamine--gl 37.2 21 0.00087 15.6 5.9 77 22-103 62-160 (412) 88 3grk_A Enoyl-(acyl-carrier-pro 36.7 16 0.00067 16.4 2.2 28 41-68 39-66 (293) 89 3nrc_A Enoyl-[acyl-carrier-pro 36.0 13 0.00055 16.9 1.6 26 41-66 34-59 (280) 90 3l0g_A Nicotinate-nucleotide p 35.9 13 0.00053 17.0 1.6 54 168-227 140-207 (300) 91 1qop_A Tryptophan synthase alp 35.4 22 0.00092 15.5 4.6 53 18-73 4-62 (268) 92 3ew8_A HD8, histone deacetylas 35.0 22 0.00094 15.4 6.9 50 146-205 170-222 (388) 93 2yx6_A Hypothetical protein PH 34.9 22 0.00094 15.4 3.9 18 47-64 72-89 (121) 94 2fb6_A Conserved hypothetical 34.6 14 0.00059 16.7 1.7 55 19-86 61-115 (117) 95 3men_A Acetylpolyamine aminohy 34.6 23 0.00095 15.4 5.2 61 127-201 191-254 (362) 96 1f76_A Dihydroorotate dehydrog 33.9 23 0.00097 15.3 5.3 28 41-68 60-87 (336) 97 1zgg_A Putative low molecular 33.7 23 0.00098 15.3 6.2 78 1-86 1-81 (150) 98 1wa3_A 2-keto-3-deoxy-6-phosph 33.7 22 0.00094 15.4 2.6 61 20-89 50-110 (205) 99 2qk4_A Trifunctional purine bi 33.4 23 0.00098 15.3 2.6 75 20-102 78-182 (452) 100 3k31_A Enoyl-(acyl-carrier-pro 33.1 16 0.00065 16.4 1.7 52 41-92 38-90 (296) 101 3jr2_A Hexulose-6-phosphate sy 33.1 8.7 0.00037 18.1 0.4 27 127-160 70-96 (218) 102 2ph5_A Homospermidine synthase 32.8 24 0.001 15.2 5.8 53 174-226 241-307 (480) 103 3oy2_A Glycosyltransferase B73 32.1 22 0.0009 15.5 2.3 37 1-37 1-39 (413) 104 2c6q_A GMP reductase 2; TIM ba 31.8 25 0.0011 15.1 5.9 43 17-66 147-189 (351) 105 2p91_A Enoyl-[acyl-carrier-pro 31.7 25 0.0011 15.1 2.6 34 33-68 23-56 (285) 106 3exr_A RMPD (hexulose-6-phosph 31.6 20 0.00084 15.7 2.0 17 51-68 23-39 (221) 107 2pqp_A HD7A, histone deacetyla 31.4 25 0.0011 15.0 4.9 64 127-202 201-267 (421) 108 3l9w_A Glutathione-regulated p 31.1 26 0.0011 15.0 6.3 17 48-64 104-120 (413) 109 3gnn_A Nicotinate-nucleotide p 30.4 22 0.00092 15.5 2.1 14 214-227 196-209 (298) 110 2yrx_A Phosphoribosylglycinami 30.4 26 0.0011 14.9 4.1 75 20-103 73-177 (451) 111 2wfb_A Putative uncharacterize 29.9 27 0.0011 14.9 3.2 16 210-225 96-111 (120) 112 3do5_A HOM, homoserine dehydro 29.7 27 0.0011 14.9 5.9 107 47-163 96-218 (327) 113 2zxr_A Single-stranded DNA spe 29.4 27 0.0012 14.8 3.9 51 2-56 74-126 (666) 114 2pd4_A Enoyl-[acyl-carrier-pro 29.0 23 0.00098 15.3 2.0 27 41-67 14-40 (275) 115 2bib_A CBPE, teichoic acid pho 28.6 28 0.0012 14.7 5.7 20 156-175 205-224 (547) 116 3l49_A ABC sugar (ribose) tran 28.3 29 0.0012 14.7 5.5 54 10-66 15-68 (291) 117 3ojf_A Enoyl-[acyl-carrier-pro 28.3 21 0.00087 15.6 1.6 27 41-67 14-40 (257) 118 2o2s_A Enoyl-acyl carrier redu 28.3 25 0.0011 15.1 2.1 28 41-68 17-44 (315) 119 1z3e_A Regulatory protein SPX; 28.0 24 0.001 15.2 1.9 77 9-90 5-96 (132) 120 2gek_A Phosphatidylinositol ma 27.9 29 0.0012 14.7 6.0 35 1-36 21-58 (406) 121 1viz_A PCRB protein homolog; s 27.9 29 0.0012 14.7 3.0 22 45-66 19-40 (240) 122 1zz1_A Histone deacetylase-lik 27.8 29 0.0012 14.7 5.2 11 168-178 300-310 (369) 123 3nav_A Tryptophan synthase alp 27.6 30 0.0012 14.6 6.3 46 18-66 7-54 (271) 124 2jbm_A Nicotinate-nucleotide p 27.5 30 0.0012 14.6 4.8 40 170-215 131-176 (299) 125 3fz4_A Putative arsenate reduc 25.9 25 0.0011 15.0 1.7 76 9-89 7-99 (120) 126 1lss_A TRK system potassium up 24.9 33 0.0014 14.3 4.1 47 1-63 5-52 (140) 127 1jvn_A Glutamine, bifunctional 24.8 33 0.0014 14.3 4.3 23 148-170 190-214 (555) 128 1nmo_A Hypothetical protein YB 24.4 34 0.0014 14.3 3.8 22 49-71 80-101 (247) 129 1vcf_A Isopentenyl-diphosphate 24.4 34 0.0014 14.3 2.8 13 52-64 81-93 (332) 130 3iix_A Biotin synthetase, puta 24.3 34 0.0014 14.2 5.3 62 2-71 103-164 (348) 131 1d7o_A Enoyl-[acyl-carrier pro 24.3 33 0.0014 14.3 2.1 28 41-68 16-43 (297) 132 1qsg_A Enoyl-[acyl-carrier-pro 24.1 33 0.0014 14.3 2.0 28 41-68 17-44 (265) 133 3mjf_A Phosphoribosylamine--gl 23.9 30 0.0013 14.6 1.8 78 20-102 57-160 (431) 134 2v82_A 2-dehydro-3-deoxy-6-pho 23.6 32 0.0013 14.4 1.9 62 19-89 46-107 (212) 135 1ypf_A GMP reductase; GUAC, pu 22.8 36 0.0015 14.1 5.5 19 48-66 159-177 (336) 136 2b4q_A Rhamnolipids biosynthes 22.7 36 0.0015 14.0 2.2 47 33-83 31-77 (276) 137 3c2e_A Nicotinate-nucleotide p 22.7 22 0.00093 15.4 0.9 12 174-185 137-148 (294) 138 1vbj_A Prostaglandin F synthas 22.4 37 0.0015 14.0 2.6 145 14-180 93-238 (281) 139 3ck2_A Conserved uncharacteriz 22.3 37 0.0016 14.0 3.4 58 1-71 7-64 (176) 140 2ae2_A Protein (tropinone redu 22.3 22 0.00094 15.4 0.9 94 43-138 17-116 (260) 141 3lp8_A Phosphoribosylamine-gly 21.9 38 0.0016 13.9 2.3 78 21-103 74-177 (442) 142 3lwt_X Phosphoinositide phosph 21.6 38 0.0016 13.9 4.2 45 11-56 279-323 (505) 143 3ek2_A Enoyl-(acyl-carrier-pro 21.5 38 0.0016 13.9 2.6 27 41-67 22-48 (271) 144 3gdg_A Probable NADP-dependent 21.5 34 0.0014 14.2 1.7 32 33-66 22-53 (267) 145 2nq5_A 5-methyltetrahydroptero 21.4 39 0.0016 13.9 1.9 25 46-70 43-67 (755) 146 2pkf_A Adenosine kinase; trans 21.3 18 0.00076 16.0 0.3 145 1-157 11-160 (334) 147 1xx1_A Smase I, sphingomyelina 21.2 39 0.0016 13.9 5.4 25 34-65 9-33 (285) 148 2yw2_A Phosphoribosylamine--gl 21.1 39 0.0016 13.8 4.2 39 20-63 52-90 (424) 149 2czd_A Orotidine 5'-phosphate 21.0 39 0.0016 13.8 4.8 28 49-78 68-95 (208) 150 3co8_A Alanine racemase; prote 20.3 41 0.0017 13.7 3.4 53 15-68 16-68 (380) 151 1ka9_F Imidazole glycerol phos 20.1 41 0.0017 13.7 7.1 68 4-79 48-117 (252) 152 1p3d_A UDP-N-acetylmuramate--a 20.1 41 0.0017 13.7 6.4 96 126-222 306-424 (475) 153 1xdw_A NAD+-dependent (R)-2-hy 20.0 41 0.0017 13.7 2.6 31 1-37 1-31 (331) No 1 >1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9 Probab=100.00 E-value=0 Score=809.52 Aligned_cols=264 Identities=34% Similarity=0.598 Sum_probs=253.9 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274) |||||||||||+|||++|+++||+||++|++|||||||||||+|+|||+++|++|+++||||||+|||+|||||++++|+ T Consensus 5 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~iDfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 84 (281) T 1t71_A 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAVVI 84 (281) T ss_dssp CEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEECCTTTTCCGGGHHHHT T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHH T ss_conf 36999980688889999999809999982899999898536789698999999999719989924721025635799885 Q ss_pred HCCCEEEECCCCC----CCCCCCEEEEECCCCCEEEEEEEEHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 1893897500798----8875407999848992899999600005883-3259899999998634136899889996257 Q gi|254780659|r 81 RHCKFLRPANYPP----NTPGNGSGLYCAKNGSNVLVANIMGRVFMNP-LLDDPFRTADKILATCPLKEQADVIVFDFHA 155 (274) Q Consensus 81 ~~~~ilRP~N~p~----~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~-~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa 155 (274) +++|||||+|||+ ++||+||.+++.. +.+++|+|||||+||.| .++|||+.++.++.+ .++++||||||| T Consensus 85 ~~~~ilRP~N~p~~~p~~~pG~G~~i~~~~-~~~i~Vinl~Gr~fm~~~~~~~pf~~~~~~~~~----~~~~~iiVDfHA 159 (281) T 1t71_A 85 NKKDLVRPLNLDTSFAFHNLGQGSLVFEFN-KAKIRITNLLGTSVPLPFKTTNPFKVLKELILK----RDCDLHIVDFHA 159 (281) T ss_dssp TCTTEECBSCBCTTSTTTTSSBSEEEEECS-SCEEEEEEEECTTSCCSSCBCCHHHHHHHHHTT----CCCSEEEEEEEC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEEHHCCCCCCCCCCCCHHHHHHHHHHC----CCCCEEEEECCC T ss_conf 266431045455446788888757999516-742542101174356875456356777788753----479879997355 Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC-HHHCCCCCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 62289999997608957799806976246545640367289840560137-12103547467898885168865411157 Q gi|254780659|r 156 ETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIAN 234 (274) Q Consensus 156 EaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~-~~SVIG~~~~~~i~rf~t~~p~~r~~~a~ 234 (274) ||||||+|||||||||||||+||||||||||+||||+|||||||+||||| |||||||+++++|+||++++|. ||++|+ T Consensus 160 EATSEK~Amg~~lDGrVsaVvGTHTHV~TaD~rILp~GTAyiTDvGMtG~~~dSVIG~~~e~~i~rf~t~~p~-rf~~a~ 238 (281) T 1t71_A 160 ETTSEKNAFCMAFDGYVTTIFGTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSK 238 (281) T ss_dssp SCHHHHHHHHHHHTTTSSEEEEESSSSCCTTCEECTTSCEEESCCCEEBCCTTSBTTBCHHHHHHHHTTCCCC-CCCBCC T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCC T ss_conf 1178999999873698789985675622676647589819981486655886753254717899999718998-866689 Q ss_pred CCEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCC Q ss_conf 8719999999984799867467899876831657875349 Q gi|254780659|r 235 GPATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFWT 274 (274) Q Consensus 235 g~~~l~gv~ieid~~tG~a~~I~ri~igg~L~e~~p~~~~ 274 (274) ++++|||++||+|++||||.+|+|||| .|..|.+|+ T Consensus 239 g~~~l~gv~i~id~~tgka~~Ieri~i----~ed~p~~~~ 274 (281) T 1t71_A 239 CGAQLNGVFFEVDVNTKKVIKTEAIRI----VEDDPRYLK 274 (281) T ss_dssp SCEEEEEEEEECCTTTCCCCEEEEEEE----EECCGGGTT T ss_pred CCCEEEEEEEEEECCCCCEEEEEEEEE----CCCCHHHHH T ss_conf 986899999998889897678999996----167704888 No 2 >1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9 Probab=100.00 E-value=0 Score=797.26 Aligned_cols=251 Identities=41% Similarity=0.741 Sum_probs=242.0 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274) |||||||||||+|||++|+++||+||++| |||||||||||+|+|||+++|++|+++||||||+|||+|||||+++||+ T Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~lk~~~--DfVIaNgENaa~G~Git~~~~~~L~~~GvDvIT~GNH~wd~kei~~~i~ 78 (255) T 1t70_A 1 MRVLFIGDVFGQPGRRVLQNHLPTIRPQF--DFVIVNMENSAGGFGMHRDAARGALEAGAGCLTLGNHAWHHKDIYPMLS 78 (255) T ss_dssp CEEEEECCBBHHHHHHHHHHHHHHHGGGC--SEEEEECTBTTTTSSCCHHHHHHHHHHTCSEEECCTTTTSSTTHHHHHH T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHC--CEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHC T ss_conf 93999982689889999998718778509--8999998547898689999999999719979944741033860034441 Q ss_pred HC-CCEEEECCCCC-CCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCH Q ss_conf 18-93897500798-88754079998489928999996000058833259899999998634136899889996257622 Q gi|254780659|r 81 RH-CKFLRPANYPP-NTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETT 158 (274) Q Consensus 81 ~~-~~ilRP~N~p~-~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaT 158 (274) ++ ++||||+|||+ ++||+||.+++. +|+|++|+|||||+||.+ +||||+++|++|++ .+.++|||||||||| T Consensus 79 ~~~~~ilrp~N~p~~~~pG~G~~~~~~-~g~ki~Vinl~Gr~fM~~-~d~PF~~~d~~l~~----~~~~~i~VDfHaEaT 152 (255) T 1t70_A 79 EDTYPIVRPLNYADPGTPGVGWRTFDV-NGEKLTVVNLLGRVFMEA-VDNPFRTMDALLER----DDLGTVFVDFHAEAT 152 (255) T ss_dssp TTCSCEECCSCCCCTTCSSCSEEEEEC-SSSEEEEEEEECCTTSCC-CSCHHHHHHHHTTC----SSCCEEEEEEECSCH T ss_pred CCCCCCCHHHCCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCCCC-CCCHHHHHHHHHHH----CCCCEEEEECCCHHH T ss_conf 244000245507788899863999962-664399999325203786-77879999998864----468849998345037 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEE Q ss_conf 89999997608957799806976246545640367289840560137121035474678988851688654111578719 Q gi|254780659|r 159 SEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPAT 238 (274) Q Consensus 159 SEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~ 238 (274) |||+|||||||||||||+||||||||||+||||+|||||||+||||||||||||+++++|+||++++|. ||++|+++++ T Consensus 153 SEK~A~g~~ldGrvsavvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~-rf~~a~g~~~ 231 (255) T 1t70_A 153 SEKEAMGWHLAGRVAAVIGTHTHVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERPH-RYGVAEGRAE 231 (255) T ss_dssp HHHHHHHHHHTTSSSEEEEESSCSCBSCCEEETTTEEEESCCCCBEESSSBTTBCSHHHHHHHHHCSCC-CCCBCCSCEE T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCE T ss_conf 899998987179589998567551255546848982999378665585222255716899999708998-8746799869 Q ss_pred EEEEEEEEECCCCCEEEEEEEEEC Q ss_conf 999999984799867467899876 Q gi|254780659|r 239 LCGICAEISDVTGLAEKIAPIRIG 262 (274) Q Consensus 239 l~gv~ieid~~tG~a~~I~ri~ig 262 (274) ||||+||+| ||||++|+||||. T Consensus 232 l~gv~ie~d--tg~a~~I~ri~i~ 253 (255) T 1t70_A 232 LNGVALHFE--GGKATAAERYRFI 253 (255) T ss_dssp EEEEEEEEE--TTEEEEEEEEEEE T ss_pred EEEEEEEEC--CCCEEEEEEEEEC T ss_conf 999999967--9978989999945 No 3 >2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} SCOP: d.159.1.10 PDB: 2cv9_A Probab=100.00 E-value=0 Score=796.68 Aligned_cols=250 Identities=43% Similarity=0.730 Sum_probs=242.1 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274) |||||||||||+|||++++++||+||++| |||||||||||+|+|||+++|++|+++||||||+|||+|||||+++||+ T Consensus 1 M~iLfiGDIvG~~Gr~~v~~~Lp~l~~~~--DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 78 (252) T 2z06_A 1 MRVLFIGDVMAEPGLRAVGLHLPDIRDRY--DLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLE 78 (252) T ss_dssp CEEEEECCBCHHHHHHHHHHHHHHHGGGC--SEEEEECTTTTTTSSCCHHHHHHHHHHTCCEEECCTTTTSCTTHHHHHH T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHC--CEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHCCHHHHHHHH T ss_conf 95999971689889999998767767518--8999951357888689999999999819859973844324557898762 Q ss_pred HCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH Q ss_conf 18938975007988875407999848992899999600005883325989999999863413689988999625762289 Q gi|254780659|r 81 RHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE 160 (274) Q Consensus 81 ~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE 160 (274) + ++||||+|||+++||+||.+|+. +|+|++|+|||||+||.+ +||||+++|+++++ .++|+|||||||||||| T Consensus 79 ~-~~ilRP~N~~~~~PG~G~~i~~~-~g~~i~Vinl~Gr~fM~~-~d~PF~~~d~~l~~----~~~~~iiVDfHaEaTSE 151 (252) T 2z06_A 79 S-EPVVRPLNYPPGTPGKGFWRLEV-GGESLLFVQVMGRIFMDP-LDDPFRALDRLLEE----EKADYVLVEVHAEATSE 151 (252) T ss_dssp H-SSEECCTTSCSSCSSCSEEEEEE-TTEEEEEEEEECCTTSCC-CCCHHHHHHHHHHH----CCCSEEEEEEECSCHHH T ss_pred C-CHHCCCCCCCCCCCCCEEEEECC-CCCEEEEEEEEHHHCCCC-CCCHHHHHHHHHHH----CCCCEEEEECCCCHHHH T ss_conf 0-11125011168999870699735-994799998003345998-89979999999974----68967999867750789 Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEE Q ss_conf 99999760895779980697624654564036728984056013712103547467898885168865411157871999 Q gi|254780659|r 161 KQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240 (274) Q Consensus 161 K~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~~r~~~a~g~~~l~ 240 (274) |+|||||||||||||+||||||||||+||||+|||||||+||||||||||||+++.+|+||++++|. ||++|+|+++|| T Consensus 152 K~A~g~~lDGrvsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~t~~p~-rf~~a~g~~~l~ 230 (252) T 2z06_A 152 KMALAHYLDGRASAVLGTHTHVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQ-PFRAAQGKARFH 230 (252) T ss_dssp HHHHHHHHBTTBSEEEEESSCSCBSCCEECTTSCEEESCCCCBEESSSBTTBCHHHHHHHHHHCSCC-CCCBCCSCEEEE T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCEECCCHHHHHHHHHHCCCC-CCCCCCCCCEEE T ss_conf 9998976069689998567665566445747980998168555575135055727899999708998-761479986999 Q ss_pred EEEEEEECCCCCEEEEEEEEEC Q ss_conf 9999984799867467899876 Q gi|254780659|r 241 GICAEISDVTGLAEKIAPIRIG 262 (274) Q Consensus 241 gv~ieid~~tG~a~~I~ri~ig 262 (274) ||++++| ||||++|+|||++ T Consensus 231 gv~i~~~--tg~a~~I~ri~~~ 250 (252) T 2z06_A 231 ATELVFE--GGRPVAISPYVWE 250 (252) T ss_dssp EEEEEEE--TTEEEEEEEEEEE T ss_pred EEEEEEC--CCCEEEEEEEEEC T ss_conf 9999907--9988888999845 No 4 >3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* Probab=98.91 E-value=1.6e-07 Score=68.24 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=122.0 Q ss_pred EEEEEEECCCH----------------HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC-----HHHHHHHHHCCC Q ss_conf 26999720276----------------889999998089888609989999170047886789-----999999983799 Q gi|254780659|r 2 RLLFLGDIVGK----------------TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT-----EKIFCEMMETGI 60 (274) Q Consensus 2 kiLfiGDIvG~----------------~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git-----~~~~~~l~~~Gv 60 (274) +||..-|+-|. .|--.+...+.++|++..--+++-+|.+- .|..++ ...++-|-.+|. T Consensus 8 tILhtnD~Hg~l~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~~~~l~ldaGD~~-~Gs~~s~~~~g~~~~~~mn~~g~ 86 (509) T 3ive_A 8 TIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYF-TGPYISSLTKGKAIIDIMNTMPF 86 (509) T ss_dssp EEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCS-SSSHHHHTTTTHHHHHHHTTSCC T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC-CCCHHHHHHCCHHHHHHHHCCCC T ss_conf 99998436546425687302478766475999999999998639698999789887-77188877599899999874599 Q ss_pred CEEEECHHHHCCC--CHHHHHHHCCCEEEECCC--C-CC--CCCCCEEEEECCCCCEEEEEEEEHHH----CCC------ Q ss_conf 8999342653022--204754218938975007--9-88--87540799984899289999960000----588------ Q gi|254780659|r 61 DVITTGNHVWDKR--EALVFSQRHCKFLRPANY--P-PN--TPGNGSGLYCAKNGSNVLVANIMGRV----FMN------ 123 (274) Q Consensus 61 DviT~GNH~wd~k--ei~~~i~~~~~ilRP~N~--p-~~--~PG~G~~i~~~~~g~ki~Vinl~Gr~----fM~------ 123 (274) |++|.|||=||.- .+..++++.+.-+--+|. . .. ...+-|.+++ ++|.||+|+-+.... ... T Consensus 87 Da~~lGNHEFD~G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~~~i~~-~~G~kIgviGl~~~~~~~~~~~~~~~~~ 165 (509) T 3ive_A 87 DAVTIGNHEFDHGWDNTLLQLSQAKFPIVQGNIFYQNSSKSFWDKPYTIIE-KDGVKIGVIGLHGVFAFNDTVSAATRVG 165 (509) T ss_dssp SEECCCGGGGTTCHHHHHHHHTTCSSCBCCCSEEETTSCCBSSSCSEEEEE-ETTEEEEEEEEECHHHHHHHSCGGGCTT T ss_pred CEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEE-ECCEEEEEEEEECCCCCCCCCCCCCCCC T ss_conf 899984451365889999999758997784454323454646788869999-8998999998734555776335666676 Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCC---------------CHHHHHHHHHHHCCCEEEEEECCCCCCCCH Q ss_conf 332598999999986341368998899962576---------------228999999760895779980697624654 Q gi|254780659|r 124 PLLDDPFRTADKILATCPLKEQADVIVFDFHAE---------------TTSEKQCFAHFVDSRASLVVGTHTHIPTAD 186 (274) Q Consensus 124 ~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaE---------------aTSEK~A~g~~lDGrVsaVvGTHTHV~TaD 186 (274) -...+|..++.+.++++ +.++|+|++=.|.= +-.+..+++-.++| +.+++|-|+|..... T Consensus 166 ~~~~d~v~~~~~~v~~l--k~~~D~II~L~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iD~ilgGH~H~~~~~ 240 (509) T 3ive_A 166 IEARDEIKWLQRYIDEL--KGKVDLTVALIHEGVPARQSSMGGTDVRRALDKDIQTASQVKG-LDILITGHAHVGTPE 240 (509) T ss_dssp EEECCHHHHHHHHHHHH--TTTCSEEEEEEECSSCCCCCCC---CCCCCCHHHHHHHHHCSS-CCEEEEESSCCCCSS T ss_pred EEECCHHHHHHHHHHHH--HCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCEEECCCCCCCCCC T ss_conf 27768999999998863--3358789997535745445566764210123567887613899-876852788756655 No 5 >2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus HB8} SCOP: d.114.1.1 d.159.1.2 Probab=98.90 E-value=1.6e-07 Score=68.18 Aligned_cols=179 Identities=16% Similarity=0.099 Sum_probs=127.4 Q ss_pred EEEEEEECCCHH---------------HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC-----HHHHHHHHHCCCC Q ss_conf 269997202768---------------89999998089888609989999170047886789-----9999999837998 Q gi|254780659|r 2 RLLFLGDIVGKT---------------GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT-----EKIFCEMMETGID 61 (274) Q Consensus 2 kiLfiGDIvG~~---------------Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git-----~~~~~~l~~~GvD 61 (274) .||..-|+-|.- |.-.+...+.++|++..--+++-+|.+.. |..++ ....+-|-.+|.| T Consensus 31 tILhtnD~HG~l~~~~~~~~~~~~~~gG~arlat~i~~~r~~~~~~L~ld~GD~~~-Gs~~s~~~~G~~~~~~~n~~g~D 109 (552) T 2z1a_A 31 TLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQ-GTLYFNQYRGLADRYFMHRLRYR 109 (552) T ss_dssp EEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSS-SSHHHHHHTTHHHHHHHHHTTCC T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC-CCHHHHHHCCHHHHHHHHCCCCC T ss_conf 99997346458636455546777764759999999999997697929997898777-63998860981799998656988 Q ss_pred EEEECHHHHCC--CCHHHHHHHCCCEEEECCCCC-C---CC--CCCEEEEECCCCCEEEEEEEEHHHCC-------CCCC Q ss_conf 99934265302--220475421893897500798-8---87--54079998489928999996000058-------8332 Q gi|254780659|r 62 VITTGNHVWDK--REALVFSQRHCKFLRPANYPP-N---TP--GNGSGLYCAKNGSNVLVANIMGRVFM-------NPLL 126 (274) Q Consensus 62 viT~GNH~wd~--kei~~~i~~~~~ilRP~N~p~-~---~P--G~G~~i~~~~~g~ki~Vinl~Gr~fM-------~~~~ 126 (274) ++|.|||=||. ..+..++.+.+.=+=-+|.-. . .+ -..|.+++ .+|.||+|+-+...-.+ .... T Consensus 110 a~~lGNHEfd~G~~~l~~~~~~~~fp~L~aNv~~~~~~~~~~~~~~y~i~~-~~g~kVgviGl~~~~~~~~~~~~~~~~~ 188 (552) T 2z1a_A 110 AMALGNHEFDLGPGPLADFLKGARFKVVSANVDASREPRLKGLFAPYAVVV-VGGERVGIIGLTTPDTREISNPGPTVAF 188 (552) T ss_dssp EEECCGGGGTTCHHHHHHHHTTCCSEEECTTEECTTCGGGTTSCBSEEEEE-ETTEEEEEEEEECTTHHHHSCCCTTCEE T ss_pred EEEECHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEE-ECCCEEEEEEEECCCCCCCCCCCCCEEE T ss_conf 897640421268899999998669988874200466643466668549997-0785799997504542110256771575 Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 59899999998634136899889996257622899999976089577998069762465 Q gi|254780659|r 127 DDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTA 185 (274) Q Consensus 127 d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~Ta 185 (274) .+|..++.+.+.+.. ++++|+|++=-|.-.. |-..++..++| +.+++|-|||..-. T Consensus 189 ~d~~~~~~~~v~~~~-~~~~DviV~lsH~g~~-~d~~la~~~~~-id~IlgGHsH~~~~ 244 (552) T 2z1a_A 189 LDPYESAQKAVYELL-AKGVNKIVVLSHLGYG-EDLKLARRLVG-VQVIVGGHSHTLLG 244 (552) T ss_dssp CCHHHHHHHHHHHHH-HTTCCCEEEEEESCHH-HHHHHHTTCSS-CCEEEECSSCCCBS T ss_pred CCHHHHHHHHHHHHH-HCCCCEEEEEECCCCH-HHHHHHHHCCC-CCEEECCCCCEECC T ss_conf 558999999999998-4699879998258847-89999982888-64010574000002 No 6 >3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} Probab=98.86 E-value=1.6e-07 Score=68.18 Aligned_cols=184 Identities=17% Similarity=0.119 Sum_probs=120.6 Q ss_pred EEEEEEECCCH--------------HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-----------------CHH Q ss_conf 26999720276--------------88999999808988860998999917004788678-----------------999 Q gi|254780659|r 2 RLLFLGDIVGK--------------TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-----------------TEK 50 (274) Q Consensus 2 kiLfiGDIvG~--------------~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-----------------t~~ 50 (274) +||-.-|+-|+ .|.-.+...+.++|+++. +.+++.+-..-.|--+ ... T Consensus 13 ~il~tnD~Hg~l~~~~~~~~~~~~~gG~arl~t~i~~~r~~~~-~~l~ldaGD~~~Gs~~~~~~~~~~~~~~~~~~~g~~ 91 (341) T 3gve_A 13 SILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNP-NTLLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHP 91 (341) T ss_dssp EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCS-SEEEEECSCCSCSSHHHHHHHHHHHHHHHHTSSCCH T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCH T ss_conf 9999776656865756667777676649999999999996599-879997786567860255543203443322446708 Q ss_pred HHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHCCCEEEECCCCC--CC----CC--CCEEEEEC---CCCCEEEEEEEE Q ss_conf 99999837998999342653022--20475421893897500798--88----75--40799984---899289999960 Q gi|254780659|r 51 IFCEMMETGIDVITTGNHVWDKR--EALVFSQRHCKFLRPANYPP--NT----PG--NGSGLYCA---KNGSNVLVANIM 117 (274) Q Consensus 51 ~~~~l~~~GvDviT~GNH~wd~k--ei~~~i~~~~~ilRP~N~p~--~~----PG--~G~~i~~~---~~g~ki~Vinl~ 117 (274) ..+-|-.+|.|++|.|||-||.. .+..+++..+.=+=-+|... +. |- ..+.++.. .+|.||+|+-+. T Consensus 92 ~~~~~n~~g~Da~~~GNHEfd~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~p~~~~~~~~~~~~g~~~g~kIgviG~~ 171 (341) T 3gve_A 92 IISVMNALKYDAGTLGNHEFNYGLDFLDGTIKGADFPIVNANVKTTSGENRYTPYVINEKTLIDENGNEQKVKVGYIGFV 171 (341) T ss_dssp HHHHHHHTTCCBEECCGGGGTTCHHHHHHHHHTCSSCEECSSEECTTSCBSSCCEEEEEEEEECTTSCEEEEEEEEEEEC T ss_pred HHHHHHHCCCCEEECCHHHCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCC T ss_conf 99998704887672251530257899999983478976877646378873667753340699985385103899995556 Q ss_pred HHHCC---------CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC---------HHHHHHHHHHHCCCEEEEEECC Q ss_conf 00058---------83325989999999863413689988999625762---------2899999976089577998069 Q gi|254780659|r 118 GRVFM---------NPLLDDPFRTADKILATCPLKEQADVIVFDFHAET---------TSEKQCFAHFVDSRASLVVGTH 179 (274) Q Consensus 118 Gr~fM---------~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa---------TSEK~A~g~~lDGrVsaVvGTH 179 (274) ..-.. .-.+.+|..++.+.+++.+ .+.+|+|++=.|.-- .-+-..++-.++| |.+|+|-| T Consensus 172 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~l~-~~g~DiiV~lsH~G~~~d~~~~~~~~~~~~la~~~~g-vD~IlgGH 249 (341) T 3gve_A 172 PPQIMTWDKKNLEGQVQVQDIVESANETIPKMK-AEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKG-IDAIISGH 249 (341) T ss_dssp CTTHHHHTHHHHTTTCEECCHHHHHHHHHHHHH-HTTCSEEEEEECCCCCSSCCCTTCSSCHHHHHHHCSC-CCEEEECS T ss_pred CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCC-CCEEEECC T ss_conf 865332346566576112559999999997666-4499889998516844443345544178899855999-64899798 Q ss_pred CCCCCCHHH Q ss_conf 762465456 Q gi|254780659|r 180 THIPTADAQ 188 (274) Q Consensus 180 THV~TaD~r 188 (274) +|....... T Consensus 250 sH~~~~~~~ 258 (341) T 3gve_A 250 QHGLFPSAE 258 (341) T ss_dssp SCCEESCGG T ss_pred CCCCCCCCC T ss_conf 886566765 No 7 >1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A Probab=98.85 E-value=2.7e-07 Score=66.77 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=114.6 Q ss_pred CEEEEEEECCCH--------HHHHHHHHHHHHHHHH---CCCC-EEEECCEECCCCCCCC-----HHHHHHHHHCCCCEE Q ss_conf 926999720276--------8899999980898886---0998-9999170047886789-----999999983799899 Q gi|254780659|r 1 MRLLFLGDIVGK--------TGRSIVYEMLPRLIRD---FQLD-FVIANGENSAGGFGIT-----EKIFCEMMETGIDVI 63 (274) Q Consensus 1 MkiLfiGDIvG~--------~Gr~~v~~~Lp~l~~~---~~~D-fvIaNgENaa~G~Git-----~~~~~~l~~~GvDvi 63 (274) ++||..-|+-|. .|...+...+..+|++ ..++ +++-+|..- .|..++ .-.++-|-.+|+|++ T Consensus 9 l~IlhtnD~Hg~~~~~~~~~~g~~~~~~~i~~~r~~~~~~~~~~l~ld~GD~~-~gs~~s~~~~g~~~~~~mn~~g~Da~ 87 (516) T 1hp1_A 9 ITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDIN-TGVPESDLQDAEPDFRGMNLVGYDAM 87 (516) T ss_dssp EEEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCS-SSCHHHHTTTTHHHHHHHHHHTCCEE T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCHHHHHHCCHHHHHHHHCCCCCEE T ss_conf 99999762224874777777668999999999999986039898999799888-86578777498899999865798699 Q ss_pred EECHHHHCCC--CHHHHHHHCCCEEEECCCCC---CC-CCCCEEEEECCCCCEEEEEEEEHHHCC---CC------CCCC Q ss_conf 9342653022--20475421893897500798---88-754079998489928999996000058---83------3259 Q gi|254780659|r 64 TTGNHVWDKR--EALVFSQRHCKFLRPANYPP---NT-PGNGSGLYCAKNGSNVLVANIMGRVFM---NP------LLDD 128 (274) Q Consensus 64 T~GNH~wd~k--ei~~~i~~~~~ilRP~N~p~---~~-PG~G~~i~~~~~g~ki~Vinl~Gr~fM---~~------~~d~ 128 (274) |.|||=||.. .+..++...+.-.--+|.-. .. ..+-|.|++ ++|.||+|+-+...-.. .| .+.+ T Consensus 88 ~~GNHEFD~G~~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~py~I~~-~~g~kIgiIG~~~~~~~~~~~~~~~~~~~f~d 166 (516) T 1hp1_A 88 AIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFK-RQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRK 166 (516) T ss_dssp ECCGGGGSSCHHHHHHHHHHCSSCEECSSEEETTTTEESSBSEEEEE-ETTEEEEEEEEECTTTTTSSSCCSCTTEEECC T ss_pred EECCHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEE-ECCEEEEEECCCCCCCCCCCCCCCCCCCEECC T ss_conf 98804224688999999964799888635530003644557569997-66827543133334541124755556734558 Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCHH-----------HHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 8999999986341368998899962576228-----------99999976089577998069762465 Q gi|254780659|r 129 PFRTADKILATCPLKEQADVIVFDFHAETTS-----------EKQCFAHFVDSRASLVVGTHTHIPTA 185 (274) Q Consensus 129 PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTS-----------EK~A~g~~lDGrVsaVvGTHTHV~Ta 185 (274) |..++.+.++++...+.+|+|++=.|.-... ...|.+-. .+.+.+++|-|+|..-. T Consensus 167 ~~~~~~~~~~~l~~~~~~DiII~l~H~G~~~d~~~~~~~~~~~~~a~~~~-~~~iD~IlgGHsH~~~~ 233 (516) T 1hp1_A 167 PADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALP-AGSLAMIVGGHSQDPVC 233 (516) T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEESCCCGGGCCTTSCCCHHHHHHHSC-TTSSSEEECCSSCCBCC T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHCC-CCCCEEEECCCCCCCCC T ss_conf 99999999999876158988999640254455433334772188897356-78853998577764333 No 8 >3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure initiative, PSI-2; 1.90A {Candida albicans SC5314} SCOP: d.114.1.1 d.159.1.2 Probab=98.80 E-value=1.7e-07 Score=68.02 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=109.7 Q ss_pred EEEEEEECCCH--------------HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCC-------HHHHHHHHHCCC Q ss_conf 26999720276--------------889999998089888609989999170047886789-------999999983799 Q gi|254780659|r 2 RLLFLGDIVGK--------------TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGIT-------EKIFCEMMETGI 60 (274) Q Consensus 2 kiLfiGDIvG~--------------~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git-------~~~~~~l~~~Gv 60 (274) +||-.=|+=|. .+--.+.+++.+..++.+.|.+++.+--.-.|-|+. ...++-+-.+|. T Consensus 17 ~iLHTnD~HG~l~~h~~~~~~~ad~G~~~s~~~~~r~~a~~~~~d~LllDaGD~~qGt~lsd~t~~kG~~~~~i~n~~gy 96 (557) T 3c9f_A 17 NFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQDY 96 (557) T ss_dssp EEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSCHHHHSSSSTTTTTHHHHTTSCC T ss_pred EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHCCCC T ss_conf 99982456779866566445567616799999999999986399989997887778850512115488899999877798 Q ss_pred CEEEECHHHHCCCC-----HHHHHHHCCCEEEECCC---C---CCCC-CCCEEEEECC-CCCEEEEEEEEHHHC--CC-C Q ss_conf 89993426530222-----04754218938975007---9---8887-5407999848-992899999600005--88-3 Q gi|254780659|r 61 DVITTGNHVWDKRE-----ALVFSQRHCKFLRPANY---P---PNTP-GNGSGLYCAK-NGSNVLVANIMGRVF--MN-P 124 (274) Q Consensus 61 DviT~GNH~wd~ke-----i~~~i~~~~~ilRP~N~---p---~~~P-G~G~~i~~~~-~g~ki~Vinl~Gr~f--M~-~ 124 (274) |++|.|||=||..+ ...+++..+.=.=-+|. + ...| |.-|..++.+ +|.||+++-++...- -. . T Consensus 97 Da~tlGNHEFd~g~~~~~~~~~~~~~~~fp~LsaNv~~~~~~~~~~p~~~~y~~~~t~~~G~kIgviG~l~d~~~~~~~~ 176 (557) T 3c9f_A 97 DLLTIGNHELYLWENSKQEYETVVNHFQDKYVCSNVDIRLDNGLFVPLGLKYKYFTTPIRGIRVMAFGFLFDFKRFNSGT 176 (557) T ss_dssp SEECCCGGGSSSHHHHHHHHHHHHHHTTTTBBCSSEEEECTTSCEEESSBSCEEEECTTTCCEEEEEECCCCCCCCCTTE T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCC T ss_conf 99973654777661189999999875289868767761577655565456714999832898999985343566578886 Q ss_pred CCCCHHHHHHH--HHHHCCCCCCCCEEEEECCCC-------CHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCC Q ss_conf 32598999999--986341368998899962576-------228999999760895779980697624654564036 Q gi|254780659|r 125 LLDDPFRTADK--ILATCPLKEQADVIVFDFHAE-------TTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDG 192 (274) Q Consensus 125 ~~d~PF~~~d~--~l~~~~~~~~~~~i~VDfHaE-------aTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~ 192 (274) ....+..++++ +.+. +++++|+|+|=-|.- ......+++-...+.+.+++|=|||+.. ...+.+ T Consensus 177 ~v~~~~~~i~~~~~~e~--~~~~vD~IVvLsH~g~~~d~~e~~~v~~~i~~~~~d~id~I~GGHSH~r~--~~~~d~ 249 (557) T 3c9f_A 177 RVTPMAETIHEPWFQEA--LKHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRD--FTVFDS 249 (557) T ss_dssp EECCHHHHTTSHHHHHH--TTSCCSEEEEECSSCCCTTTCHHHHHHHHHHHHCTTSEEEEEECSSCCEE--EEEEET T ss_pred EECCHHHHHHHHHHHHH--HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC--CCCCCC T ss_conf 77888999998999998--75689989998623755676305679999997589987699818878777--644358 No 9 >3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp} Probab=98.65 E-value=6.2e-07 Score=64.41 Aligned_cols=185 Identities=13% Similarity=0.068 Sum_probs=120.0 Q ss_pred CEEEEEEECCCH--------------HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCH-------------HHHH Q ss_conf 926999720276--------------8899999980898886099899991700478867899-------------9999 Q gi|254780659|r 1 MRLLFLGDIVGK--------------TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITE-------------KIFC 53 (274) Q Consensus 1 MkiLfiGDIvG~--------------~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~-------------~~~~ 53 (274) ++||..-|+=|+ .|.-.+...+.++|++.. +.+++++-..-.|..+.. -.++ T Consensus 9 l~il~tnD~Hg~l~~~~~~~~~~~~~gG~arlat~i~~~r~~~~-~~l~ldaGD~~~Gs~~~~~~~~~~~~~~~~~~~~~ 87 (339) T 3jyf_A 9 LRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVK-NSVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVYK 87 (339) T ss_dssp EEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCS-CEEEEECSCCSSSSHHHHHHHHHCCCTTCCCHHHH T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCHHHHHCCCCCCCCCCCHHHH T ss_conf 99999665656875756567777675629999999999997688-96999848778883008763253113455316999 Q ss_pred HHHHCCCCEEEECHHHHCCC--CHHHHHHHCCCEEEECCCCCCCC----CCCEEEEEC--------CCCCEEEEEEEEHH Q ss_conf 99837998999342653022--20475421893897500798887----540799984--------89928999996000 Q gi|254780659|r 54 EMMETGIDVITTGNHVWDKR--EALVFSQRHCKFLRPANYPPNTP----GNGSGLYCA--------KNGSNVLVANIMGR 119 (274) Q Consensus 54 ~l~~~GvDviT~GNH~wd~k--ei~~~i~~~~~ilRP~N~p~~~P----G~G~~i~~~--------~~g~ki~Vinl~Gr 119 (274) -|-.+|.|+.|.|||=||.- .+..+++..+.-.=-+|+-.... -..|.+.+. .+|.||+|+-+... T Consensus 88 ~~n~~g~Da~~~GNHEFD~G~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~py~i~~~~v~~~~g~~~g~kIgviG~~~~ 167 (339) T 3jyf_A 88 AMNTLNYAVGNLGNHEFNYGLDFLHKALAGAKFPYVNANIIDAKTGKPMFTPYLIQDTRVVDSDGQIHTLRIGYIGFVPP 167 (339) T ss_dssp HHTTSCCSEEECCGGGGTTCHHHHHHHHHTCSSCEECSSEEETTTSSBSSCCEEEEEEEEECTTSCEEEEEEEEEEECCT T ss_pred HHHHCCCCEEECCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCC T ss_conf 99755988161124766527999999974067987766403366787277886012068875155133369988605776 Q ss_pred H---------CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH--------HHHHHHHCCCEEEEEECCCCC Q ss_conf 0---------58833259899999998634136899889996257622899--------999976089577998069762 Q gi|254780659|r 120 V---------FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEK--------QCFAHFVDSRASLVVGTHTHI 182 (274) Q Consensus 120 ~---------fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK--------~A~g~~lDGrVsaVvGTHTHV 182 (274) - .=.-.+.+|..++.+.+++++ .+.+|+|++=.|.--...+ ..++--++| +.+|+|-|||. T Consensus 168 ~~~~~~~~~~~~~~~~~d~~~~~~~~v~~l~-~~g~D~iI~l~H~G~~~d~~~~~~~~~~~~a~~~~g-iD~IlgGHsH~ 245 (339) T 3jyf_A 168 QIMTWDKANLNGKVTVNDITETARKYIPEMR-AKGADVVVVVAHSGLSADPYQAMAENSVYYLSQVPG-VDAIMFGHAHA 245 (339) T ss_dssp THHHHTHHHHTTTEEECCHHHHHHHHHHHHH-HTTCSEEEEEECCCCCCSCCCTTCSCCHHHHTTSTT-CCEEEECSSCS T ss_pred CCCCCCCCCCCCCCEECCHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCEEEECCCCC T ss_conf 6432545455687207889999999997665-528983220334485666332234326889846899-87899698876 Q ss_pred CCCHHH Q ss_conf 465456 Q gi|254780659|r 183 PTADAQ 188 (274) Q Consensus 183 ~TaD~r 188 (274) .-.... T Consensus 246 ~~~~~~ 251 (339) T 3jyf_A 246 VFPGKD 251 (339) T ss_dssp EESSGG T ss_pred CCCCCC T ss_conf 465776 No 10 >2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A Probab=98.61 E-value=4.1e-06 Score=59.10 Aligned_cols=167 Identities=13% Similarity=0.074 Sum_probs=117.8 Q ss_pred HHHHHHHHHHHHHHHC---CCCEEEECCEECCCCCCCC-----HHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHCC Q ss_conf 8999999808988860---9989999170047886789-----9999999837998999342653022--2047542189 Q gi|254780659|r 14 GRSIVYEMLPRLIRDF---QLDFVIANGENSAGGFGIT-----EKIFCEMMETGIDVITTGNHVWDKR--EALVFSQRHC 83 (274) Q Consensus 14 Gr~~v~~~Lp~l~~~~---~~DfvIaNgENaa~G~Git-----~~~~~~l~~~GvDviT~GNH~wd~k--ei~~~i~~~~ 83 (274) |--.+...+.++|++. .++.++.++-..-.|..++ ....+-+-.+|+|++| |||=||.. .+.+++++.+ T Consensus 103 G~arlatli~~~R~~~~a~~~n~LlldaGD~~qGs~~s~~~~G~~~v~~mN~lG~Da~~-GNHEFd~G~~~L~~~~~~~~ 181 (562) T 2wdc_A 103 GMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMV-SHWEWTLGRERVEELLGLFR 181 (562) T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHTCCEEC-CSGGGGGCHHHHHHHHHHCC T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCHHHHHHHHHCCCCEEE-CCCCCCCCHHHHHHHHHHCC T ss_conf 89999999999999986049987999679778771888874887899999736975885-36213468888999997569 Q ss_pred CEEEECCCCC---CCC-CCCEEEEECCCCCEEEEEEEEHHHC---------CCCCCCCHHHHHHHHHHHCCCCCCCCEEE Q ss_conf 3897500798---887-5407999848992899999600005---------88332598999999986341368998899 Q gi|254780659|r 84 KFLRPANYPP---NTP-GNGSGLYCAKNGSNVLVANIMGRVF---------MNPLLDDPFRTADKILATCPLKEQADVIV 150 (274) Q Consensus 84 ~ilRP~N~p~---~~P-G~G~~i~~~~~g~ki~Vinl~Gr~f---------M~~~~d~PF~~~d~~l~~~~~~~~~~~i~ 150 (274) .-+--+|.-. +.| =..|.+++ .+|.||+|+-+.-... ..-...+|.+++.+.++++. .+.+|+|+ T Consensus 182 fp~L~aNv~~~~~~~~~~~py~i~~-~~G~kVgvIG~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lr-~~g~DvIV 259 (562) T 2wdc_A 182 GEFLSYNIVDDLFGDPLFPAYRIHR-VGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKAR-AEGANAVV 259 (562) T ss_dssp SEECCSSCEETTTCCBSSCSEEEEE-ETTEEEEEEEECCTTHHHHSCGGGGTTEECCCCHHHHHHHHHHHH-HTTCSEEE T ss_pred CCEEECCCCCCCCCCCCCCCEEEEE-ECCEEEEEECCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHH-HCCCCEEE T ss_conf 9777511100345782677659999-899899984235776420245345577357789999999999987-53898899 Q ss_pred EECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 96257622899999976089577998069762465 Q gi|254780659|r 151 FDFHAETTSEKQCFAHFVDSRASLVVGTHTHIPTA 185 (274) Q Consensus 151 VDfHaEaTSEK~A~g~~lDGrVsaVvGTHTHV~Ta 185 (274) +=-|.-- .+-.+++-.++| +.+++|-|||-... T Consensus 260 ~LsH~G~-~~d~~la~~v~g-IDvIlgGHtH~~~~ 292 (562) T 2wdc_A 260 LLSHNGM-QLDAALAERIRG-IDLILSGHTHDLTP 292 (562) T ss_dssp EEECSCH-HHHHHHHTTSSS-CCEEEECSSCCCCS T ss_pred EEECCCC-CCCHHHHHHCCC-CCEEEECCCCCCCE T ss_conf 9605785-310678862257-40898266776410 No 11 >1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Probab=96.62 E-value=0.045 Score=32.91 Aligned_cols=183 Identities=13% Similarity=-0.011 Sum_probs=92.4 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC--CHHHHHHHHHCCCCEE-EECHHHHC----CC Q ss_conf 92699972027688999999808988860998999917004788678--9999999983799899-93426530----22 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI--TEKIFCEMMETGIDVI-TTGNHVWD----KR 73 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi--t~~~~~~l~~~GvDvi-T~GNH~wd----~k 73 (274) ++||.++||=|.- +++++.|..++ +.++|+||..|.-...|.-- .....+.|..+++.++ ..|||=|. .+ T Consensus 6 ~~i~~~~d~hg~~--~ale~~l~~~~-~~~~D~vv~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~~~~ 82 (228) T 1uf3_A 6 RYILATSNPMGDL--EALEKFVKLAP-DTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPIWEYLR 82 (228) T ss_dssp CEEEEEECCTTCH--HHHHHHHTHHH-HHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCSHHHHHH T ss_pred EEEEEEECCCCCH--HHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH T ss_conf 2999995688999--99999999877-72999999878869998782999999997404577589996899816752035 Q ss_pred CHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEE----EHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEE Q ss_conf 2047542189389750079888754079998489928999996----000058833259899999998634136899889 Q gi|254780659|r 74 EALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANI----MGRVFMNPLLDDPFRTADKILATCPLKEQADVI 149 (274) Q Consensus 74 ei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl----~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i 149 (274) +........+....... .+ .+. .++..+..+.- .+...............+..++..........| T Consensus 83 ~~~~~~~~~~~~~~~~~--------~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 152 (228) T 1uf3_A 83 EAANVELVHPEMRNVHE--------TF-TFW-RGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYPKI 152 (228) T ss_dssp HHHHHHHHCTTEEECBT--------SE-EEE-TTTEEEEEECSEEESSSCCBSSSSCEEEHHHHHHHHGGGGGSCSCCEE T ss_pred HHCCCCCCCCCCCCCCC--------EE-EEE-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 53142112342200132--------26-884-187778741774467777602323344588999999986640355148 Q ss_pred EEECCCCC-H-----HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCC Q ss_conf 99625762-2-----8999999760895779980697624654564036728984056 Q gi|254780659|r 150 VFDFHAET-T-----SEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLG 201 (274) Q Consensus 150 ~VDfHaEa-T-----SEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvG 201 (274) ++--|... . .........-+-++..++-=|||.+.. + -++|-++ +.| T Consensus 153 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GH~H~~~~--~--~~~~~~i-n~G 205 (228) T 1uf3_A 153 FLFHTMPYHKGLNEQGSHEVAHLIKTHNPLLVLVAGKGQKHE--M--LGASWVV-VPG 205 (228) T ss_dssp EEESSCBCBTTTBTTSBHHHHHHHHHHCCSEEEECCSSCEEE--E--ETTEEEE-ECC T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCE--E--ECCEEEE-ECC T ss_conf 987138876532334625565555502886799578466613--8--8988999-888 No 12 >1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Probab=96.49 E-value=0.053 Score=32.40 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=81.5 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE-EECHHHHCCCCHHHHH Q ss_conf 926999720276889999998089888609989999170047886789999999983799899-9342653022204754 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI-TTGNHVWDKREALVFS 79 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei~~~i 79 (274) |||++|.|+=|. ..++++.|..+++ .++|.||.-|.-. .++..++|.+....++ ..|||=+......... T Consensus 26 MKI~iiSDiHgn--~~ale~vl~~~~~-~~~D~vi~lGDiv------~~~~~~~l~~~~~~~~~V~GNhD~~~~~~~~~~ 96 (190) T 1s3l_A 26 MKIGIMSDTHDH--LPNIRKAIEIFND-ENVETVIHCGDFV------SLFVIKEFENLNANIIATYGNNDGERCKLKEWL 96 (190) T ss_dssp CEEEEECCCTTC--HHHHHHHHHHHHH-SCCSEEEECSCCC------STHHHHHGGGCSSEEEEECCTTCCCHHHHHHHH T ss_pred CEEEEEECCCCC--HHHHHHHHHHHHH-CCCCEEEECCCCC------CHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH T ss_conf 589999808999--6999999999975-5999999878838------989999987347608997276543035577776 Q ss_pred HHCC--CEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCC Q ss_conf 2189--38975007988875407999848992899999600005883325989999999863413689988999625762 Q gi|254780659|r 80 QRHC--KFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAET 157 (274) Q Consensus 80 ~~~~--~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEa 157 (274) .+.. +++ | -+..++. +|.++.++- | .|....+.+++. .++| T Consensus 97 ~~~~~~~~~---------~--~~~~~~~-~~~~i~l~H--g---------~~~~~l~~~~~~----~~~d---------- 139 (190) T 1s3l_A 97 KDINEENII---------D--DFISVEI-DDLKFFITH--G---------HHQSVLEMAIKS----GLYD---------- 139 (190) T ss_dssp HHHCTTCEE---------E--SEEEEEE-TTEEEEEEE--S---------CCHHHHHHHHHH----SCCS---------- T ss_pred HHCCCCCCC---------C--CEEEEEE-CCCEEEEEE--C---------CCHHHHHHHHHC----CCCC---------- T ss_conf 531222235---------6--2134675-484899998--9---------812657888642----7976---------- Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEE Q ss_conf 2899999976089577998069762465456403672898 Q gi|254780659|r 158 TSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYI 197 (274) Q Consensus 158 TSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayi 197 (274) .++==|||+|-... .+||-++ T Consensus 140 ----------------iv~~GHTH~~~~~~---~~~~~~i 160 (190) T 1s3l_A 140 ----------------VVIYGHTHERVFEE---VDDVLVI 160 (190) T ss_dssp ----------------EEEEECSSCCEEEE---ETTEEEE T ss_pred ----------------EEEECCCCCCCEEE---ECCEEEE T ss_conf ----------------99999957632799---9999999 No 13 >1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase, metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Probab=95.72 E-value=0.13 Score=29.99 Aligned_cols=186 Identities=15% Similarity=0.203 Sum_probs=95.7 Q ss_pred CEEEEEEEC-------CCHHHHHHHHHHHHHHHHHCCCCEEEECCEEC-CCCCCC-C-HHHHHHH-------HHCCCC-E Q ss_conf 926999720-------27688999999808988860998999917004-788678-9-9999999-------837998-9 Q gi|254780659|r 1 MRLLFLGDI-------VGKTGRSIVYEMLPRLIRDFQLDFVIANGENS-AGGFGI-T-EKIFCEM-------METGID-V 62 (274) Q Consensus 1 MkiLfiGDI-------vG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENa-a~G~Gi-t-~~~~~~l-------~~~GvD-v 62 (274) .|++.+||. ...+.-..+.+.+-++.++.++||||..|.|. +.|..- . ++..+.+ ...++- . T Consensus 7 ~rf~v~gD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~pdfvl~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 86 (313) T 1ute_A 7 LRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWH 86 (313) T ss_dssp EEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEE T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 79999946999997544517899999999999863699899989988777888752179999999987533565189879 Q ss_pred EEECHHHHCCCCHH--HHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCC-------CCCCC----- Q ss_conf 99342653022204--75421893897500798887540799984899289999960000588-------33259----- Q gi|254780659|r 63 ITTGNHVWDKREAL--VFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMN-------PLLDD----- 128 (274) Q Consensus 63 iT~GNH~wd~kei~--~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~-------~~~d~----- 128 (274) .+.|||-|+..... .+....++-.-|..|.. .......++..+..+.+=...|.. ...+. T Consensus 87 ~~~GNHd~~~~~~~~~~~~~~~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (313) T 1ute_A 87 VLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYR------LRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLA 160 (313) T ss_dssp ECCCHHHHHSCHHHHHHGGGTSTTEECCSSSEE------EEEECTTSSCEEEEEECCHHHHHCCGGGSTTCSCCSCSCHH T ss_pred EECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC------EECCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCC T ss_conf 844765666763222011211545568887644------01046788970699981555687303444445666643422 Q ss_pred ----HHHHHHHHHHHCCCCCCCCEEEEECCCCC--------HH--HHHHHHHHHCCCEEEEEECCCCCCCCHHHHC-CCC Q ss_conf ----89999999863413689988999625762--------28--9999997608957799806976246545640-367 Q gi|254780659|r 129 ----PFRTADKILATCPLKEQADVIVFDFHAET--------TS--EKQCFAHFVDSRASLVVGTHTHIPTADAQIL-DGG 193 (274) Q Consensus 129 ----PF~~~d~~l~~~~~~~~~~~i~VDfHaEa--------TS--EK~A~g~~lDGrVsaVvGTHTHV~TaD~rIL-p~G 193 (274) -+.-+++.|++ ...+.++|=+|--. .. .+...-.+...+|.+++.-|+|.-- |+. .++ T Consensus 161 ~~~~Q~~WL~~~L~~----~~~~~~iv~~hhp~~~~~~~~~~~~~~~~~~~ll~~~~V~~~~~GH~H~~~---~~~~~~~ 233 (313) T 1ute_A 161 LARTQLAWIKKQLAA----AKEDYVLVAGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQ---YLQDENG 233 (313) T ss_dssp HHHHHHHHHHHHHHH----CCCSEEEEECSSCSSCCSSSCCCHHHHHHTHHHHHHTTCSEEEECSSSSEE---EEECTTC T ss_pred HHHHHHHHHHHHHHH----CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEE---EEECCCC T ss_conf 399999999999972----635673899823764446678747788999999997694499958864216---7744899 Q ss_pred EEEEEC Q ss_conf 289840 Q gi|254780659|r 194 TGYITD 199 (274) Q Consensus 194 TayiTD 199 (274) +.|++- T Consensus 234 ~~~~~~ 239 (313) T 1ute_A 234 LGFVLS 239 (313) T ss_dssp CEEEEE T ss_pred CEEEEE T ss_conf 789996 No 14 >2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} Probab=94.78 E-value=0.24 Score=28.12 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=90.2 Q ss_pred CEEEEEEECC-CHH-------------HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH------HCCC Q ss_conf 9269997202-768-------------8999999808988860998999917004788678999999998------3799 Q gi|254780659|r 1 MRLLFLGDIV-GKT-------------GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM------ETGI 60 (274) Q Consensus 1 MkiLfiGDIv-G~~-------------Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~------~~Gv 60 (274) ||||-+.|+= |+. -+.++.+.+. .-++.++|+||.-|.-...+.-.+......+. ..++ T Consensus 19 MkilH~SDlHLG~~~~~~~~~~~~~~~~~~~l~~i~~-~a~~~~~D~vliaGDlf~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (336) T 2q8u_A 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVE-EAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTA 97 (336) T ss_dssp EEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHH-HHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHS T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 5898980467998777755415689999999999999-999749999998987777999888999999999999874289 Q ss_pred CEEE-ECHHHHCCCC-HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCC--CCCCCHHH-H--- Q ss_conf 8999-3426530222-0475421893897500798887540799984899289999960000588--33259899-9--- Q gi|254780659|r 61 DVIT-TGNHVWDKRE-ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMN--PLLDDPFR-T--- 132 (274) Q Consensus 61 DviT-~GNH~wd~ke-i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~--~~~d~PF~-~--- 132 (274) .++. .|||=+.... ....+......+.-.+ ...-+.+ ....|.++.++.+.-..... ......+. . T Consensus 98 ~v~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (336) T 2q8u_A 98 PVVVLPGNHDWKGLKLFGNFVTSISSDITFVM-----SFEPVDV-EAKRGQKVRILPFPYPDESEALRKNEGDFRFFLES 171 (336) T ss_dssp CEEECCC------CHHHHHHHHHHCSSEEECC-----SSSCEEE-ECTTSCEEEEEEECCC-------CCSSHHHHHHHH T ss_pred CEEEECCCCCCHHHHCCHHHHHHCCCCCEECC-----CCCCEEE-ECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 78994576464100011002221045500114-----5565688-70279669994366643000123330678899999 Q ss_pred -HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH-----------HHCCCEEEEEECCCCCCC Q ss_conf -9999863413689988999625762289999997-----------608957799806976246 Q gi|254780659|r 133 -ADKILATCPLKEQADVIVFDFHAETTSEKQCFAH-----------FVDSRASLVVGTHTHIPT 184 (274) Q Consensus 133 -~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~-----------~lDGrVsaVvGTHTHV~T 184 (274) ..+++++. ....+..++-.|....+-+...+. .+...+..|+--|.|-+. T Consensus 172 ~l~~~~~~~--~~~~~~~I~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 233 (336) T 2q8u_A 172 RLNKLYEEA--LKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIHSFR 233 (336) T ss_dssp HHHHHHHHH--HTCSSEEEEEEESEETTCC--------CCCEECGGGSCTTSSEEEEESCSSCE T ss_pred HHHHHHHHH--CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCE T ss_conf 999999873--26466539987542157666675223765455166631386289927775755 No 15 >1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A Probab=94.63 E-value=0.27 Score=27.88 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=90.7 Q ss_pred CEEEEEEECC-CHH-----H-----HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHH-------HHHHHHCCCCE Q ss_conf 9269997202-768-----8-----9999998089888609989999170047886789999-------99998379989 Q gi|254780659|r 1 MRLLFLGDIV-GKT-----G-----RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKI-------FCEMMETGIDV 62 (274) Q Consensus 1 MkiLfiGDIv-G~~-----G-----r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~-------~~~l~~~GvDv 62 (274) ||||-+.|+= |.+ - ++++++.+... .+.++|+||..|.---.+ -.+.+. .+.|.+.++.+ T Consensus 1 Mkilh~SD~HlG~~~~~~~~~~~~~~~~~~~~v~~a-~~~~vD~vli~GDlfd~~-~~~~~~~~~~~~~~~~l~~~~ipv 78 (333) T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIA-VQENVDFILIAGDLFHSS-RPSPGTLKKAIALLQIPKEHSIPV 78 (333) T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHH-HHTTCSEEEEESCSBSSS-SCCHHHHHHHHHHHHHHHTTTCCE T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCE T ss_conf 977999138888887784457999999999999999-873999999898878899-899999999999999998689959 Q ss_pred -EEECHHHHCC--CCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCC--CCCC-CHHHHHHHH Q ss_conf -9934265302--220475421893897500798887540799984899289999960000588--3325-989999999 Q gi|254780659|r 63 -ITTGNHVWDK--REALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMN--PLLD-DPFRTADKI 136 (274) Q Consensus 63 -iT~GNH~wd~--kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~--~~~d-~PF~~~d~~ 136 (274) +..|||=... ....+++.....+-...+..... ...+............+......+... +... .-....... T Consensus 79 ~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (333) T 1ii7_A 79 FAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMRKEKV-ENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEI 157 (333) T ss_dssp EEECCTTTCCSSSCCHHHHHHHTTSCEECEEESSCC-CSSSEEEEECTTSCEEEEEEETTEEEEEECCCCHHHHHSSTTH T ss_pred EEECCCCCCHHCCHHHHHHHHHCCCEEEECCCCCCC-CCEEEECCCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHH T ss_conf 996466662100035788898669648704555444-4405520223652157404667613422320046788999875 Q ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHH--------HHHCCCEEEEEECCCCCCCC----HHHHCCCCEEEEECCCCCC Q ss_conf 86341368998899962576228999999--------76089577998069762465----4564036728984056013 Q gi|254780659|r 137 LATCPLKEQADVIVFDFHAETTSEKQCFA--------HFVDSRASLVVGTHTHIPTA----DAQILDGGTGYITDLGMCG 204 (274) Q Consensus 137 l~~~~~~~~~~~i~VDfHaEaTSEK~A~g--------~~lDGrVsaVvGTHTHV~Ta----D~rILp~GTayiTDvGMtG 204 (274) +... .......| +=+|.....-....+ -.+.-.+..|+-=|.|-+.. ...+.=-|+-++++.|=+| T Consensus 158 ~~~~-~~~~~~~i-~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~i~y~GS~~~~~f~e~~ 235 (333) T 1ii7_A 158 LKRL-FRPTDNAI-LMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVVYPGSLERWDFGDYE 235 (333) T ss_dssp HHHH-CCCCSSEE-EEEECCBHHHHHTTTCCCCSBCGGGSCTTCSEEEEESCSSCEEEEETTEEEEECCCSSCCSGGGCS T ss_pred HHHC-CCCCCCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCCC T ss_conf 4312-48877736-888631245556677643212210144468779727675873524399369985983122765236 Q ss_pred CHHHCCCC Q ss_conf 71210354 Q gi|254780659|r 205 DYNSSIGL 212 (274) Q Consensus 205 ~~~SVIG~ 212 (274) ...+..+. T Consensus 236 ~~~~~~~~ 243 (333) T 1ii7_A 236 VRYEWDGI 243 (333) T ss_dssp EEEEECSS T ss_pred CCCCEEEE T ss_conf 66635999 No 16 >1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 Probab=94.52 E-value=0.28 Score=27.72 Aligned_cols=194 Identities=18% Similarity=0.170 Sum_probs=102.7 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHH-HHHCCCCEEEECCEECCC-CC-CCCHHHHHHH------HHCCCCE-EEECHHHHC Q ss_conf 269997202768899999980898-886099899991700478-86-7899999999------8379989-993426530 Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRL-IRDFQLDFVIANGENSAG-GF-GITEKIFCEM------METGIDV-ITTGNHVWD 71 (274) Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l-~~~~~~DfvIaNgENaa~-G~-Git~~~~~~l------~~~GvDv-iT~GNH~wd 71 (274) +++++||. |..+-. ...+..+ +...++||||-.|.++-. |. +-.....+++ +...+-. .+.|||=.+ T Consensus 128 ~f~~~GD~-G~~~~~--~~~~~~~~~~~~~~dfvl~~GD~~Y~~~~~~~~~~~wd~~~~~~~~~~~~~P~~~~~GNHE~~ 204 (426) T 1xzw_A 128 VFGLIGDI-GQTHDS--NTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHEID 204 (426) T ss_dssp EEEEECSC-TTBHHH--HHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTSCEECCCCGGGCC T ss_pred EEEEECCC-CCCCCH--HHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 65364787-888620--489999987077875899657743046454421578889987767786049669834754556 Q ss_pred CCC-------HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 222-------0475421893897500798887540799984899289999960000588332598999999986341368 Q gi|254780659|r 72 KRE-------ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKE 144 (274) Q Consensus 72 ~ke-------i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~ 144 (274) ... ...+.... -.|.|-+ +.....|..|+. ++..+.++| -...... .+.-+.-+++-|++.. +. T Consensus 205 ~~~~~~~~~~~~~~~~~f---~~~~~~~-~~~~~~~Ysf~~-g~v~fi~ld--s~~~~~~-~~~Q~~WL~~~L~~~~-~~ 275 (426) T 1xzw_A 205 YAPDIGEYQPFVPFTNRY---PTPHEAS-GSGDPLWYAIKR-ASAHIIVLS--SYSGFVK-YSPQYKWFTSELEKVN-RS 275 (426) T ss_dssp CBGGGTBCSTTHHHHHHS---CCCCGGG-TCSSTTSEEEEE-TTEEEEECC--TTSCCST-TSHHHHHHHHHHHHCC-TT T ss_pred CCCCCCCCCCCCCHHHCC---CCCCCCC-CCCCCCEEEEEC-CEEEEEEEC--CCCCCCC-CHHHHHHHHHHHHHHH-CC T ss_conf 666655544365277618---8864456-788885599981-728999954--6668765-0499999999999754-33 Q ss_pred CCCEEEEECCCCC---------HHHH--HHH-HHHHCCCEEEEEECCCCCCC--------------CHHH--HCCCCEEE Q ss_conf 9988999625762---------2899--999-97608957799806976246--------------5456--40367289 Q gi|254780659|r 145 QADVIVFDFHAET---------TSEK--QCF-AHFVDSRASLVVGTHTHIPT--------------ADAQ--ILDGGTGY 196 (274) Q Consensus 145 ~~~~i~VDfHaEa---------TSEK--~A~-g~~lDGrVsaVvGTHTHV~T--------------aD~r--ILp~GTay 196 (274) +++.+||=+|-=. ..|. .+| -.+..-+|.+|+-=|.|.=. .+.. --|+||-| T Consensus 276 ~~~w~iv~~H~P~y~s~~~~~~~~~~~r~~l~~lf~~y~Vdlvl~GH~H~YeRt~pi~~~~~~~~~~~~~~~~~~~g~vy 355 (426) T 1xzw_A 276 ETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVNAKCTPVSDESAPVY 355 (426) T ss_dssp TCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTTCSEEEECSSSSEEEECSEECCCCCSTTCCCCCEECTTSCEE T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 79759998188864357666667788999999999981971999798556355430227732224676543369997899 Q ss_pred EECCCCCCCHHH Q ss_conf 840560137121 Q gi|254780659|r 197 ITDLGMCGDYNS 208 (274) Q Consensus 197 iTDvGMtG~~~S 208 (274) |+ .|.-|...+ T Consensus 356 iv-~G~gG~~~~ 366 (426) T 1xzw_A 356 IT-IGDGGNSEG 366 (426) T ss_dssp EE-ECCSCCTTC T ss_pred EE-ECCCCCCCC T ss_conf 99-745867776 No 17 >1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7 Probab=94.31 E-value=0.13 Score=30.01 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=52.1 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCC-------CCHHHHHHHHHCCCCEE-EECHHHHCC Q ss_conf 9269997202768899999980898886099899991700478867-------89999999983799899-934265302 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFG-------ITEKIFCEMMETGIDVI-TTGNHVWDK 72 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~G-------it~~~~~~l~~~GvDvi-T~GNH~wd~ 72 (274) |||++|+||=|. ..++++.|..++++ ++|.+|.-|.-...|.- ..++..+.+.+....++ -.|||=+.. T Consensus 26 Mki~viSDiHgn--~~ale~vl~~~~~~-~~D~ii~lGDlv~~gp~~~~~~~~~~~~~l~~l~~~~~~~~~V~GNhD~~~ 102 (208) T 1su1_A 26 MKLMFASDIHGS--LPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEV 102 (208) T ss_dssp CEEEEECCCTTB--HHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCCHH T ss_pred CEEEEEEECCCC--HHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCEEEECCCCCHHH T ss_conf 189999316899--89999999998756-998899916601337652011112809999999854996799647783787 Q ss_pred CC Q ss_conf 22 Q gi|254780659|r 73 RE 74 (274) Q Consensus 73 ke 74 (274) .+ T Consensus 103 ~~ 104 (208) T 1su1_A 103 DQ 104 (208) T ss_dssp HH T ss_pred HH T ss_conf 54 No 18 >2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} SCOP: d.159.1.6 Probab=93.35 E-value=0.064 Score=31.90 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=47.9 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC----------------------------CHHHH Q ss_conf 92699972027688999999808988860998999917004788678----------------------------99999 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI----------------------------TEKIF 52 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi----------------------------t~~~~ 52 (274) |||++|+||=++. +. -..|..+.++.++|++|..|.-..+|.-- -.+.. T Consensus 6 ~~i~~isD~h~~~--~~-l~~l~~~~~~~~~D~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (260) T 2yvt_A 6 RKVLAIKNFKERF--DL-LPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFF 82 (260) T ss_dssp CEEEEEECCTTCG--GG-HHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCH--HH-HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH T ss_conf 5899995379998--99-99999988774999999916878999875899999987645455077502663188999999 Q ss_pred HHHHHCCCCE-EEECHHHHCCC Q ss_conf 9998379989-99342653022 Q gi|254780659|r 53 CEMMETGIDV-ITTGNHVWDKR 73 (274) Q Consensus 53 ~~l~~~GvDv-iT~GNH~wd~k 73 (274) +.+.+.++-+ ...|||-+... T Consensus 83 ~~~~~~~~~~~~i~GNHD~~~~ 104 (260) T 2yvt_A 83 REIGELGVKTFVVPGKNDAPLK 104 (260) T ss_dssp HHHHTTCSEEEEECCTTSCCHH T ss_pred HHHHHCCCCEEEECCCCCHHHH T ss_conf 9998559963886288617665 No 19 >2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei} Probab=92.99 E-value=0.11 Score=30.40 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=52.1 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHH Q ss_conf 9269997202768899999980898886099899991700478867899999999837998999342653 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVW 70 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~w 70 (274) +||++||||=|. ..++++.|.++..+.+.|-+|..|.-...|-. +.++.+.+.+.++-+ -+|||=. T Consensus 19 gRi~viGDIHG~--~~~L~~lL~~i~~~~~~d~lv~lGDliDrGp~-s~~vl~~l~~~~~~~-v~GNHE~ 84 (262) T 2qjc_A 19 GRVIIVGDIHGC--RAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPD-SFGVVRLLKRLGAYS-VLGNHDA 84 (262) T ss_dssp SCEEEECCCTTC--HHHHHHHHHHHTCCTTTSEEEECSCCSSSSSC-HHHHHHHHHHHTCEE-CCCHHHH T ss_pred CCEEEEEECCCC--HHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-CHHHHHHHHCCCCEE-ECCCHHH T ss_conf 988999950269--89999999964899899989983783179988-399999876466458-4064799 No 20 >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Probab=92.34 E-value=0.11 Score=30.31 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=39.3 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH---HHHHHHHHHCCCEEEEEECCCCCCCCHHHHCC Q ss_conf 2598999999986341368998899962576228---99999976089577998069762465456403 Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTS---EKQCFAHFVDSRASLVVGTHTHIPTADAQILD 191 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTS---EK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp 191 (274) ..+|...++.+.+. .++. |=||+|++. +-........-++..++--.|.+..- +..|+ T Consensus 70 v~~P~~~i~~~~~~-----g~d~--I~~H~E~~~~~~~~i~~i~~~g~~~Glal~p~T~~~~~-~~~l~ 130 (220) T 2fli_A 70 VVDPERYVEAFAQA-----GADI--MTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATAL-EPLLD 130 (220) T ss_dssp SSSGGGGHHHHHHH-----TCSE--EEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGG-GGGTT T ss_pred CCCHHHHHHHHHHC-----CCCE--EEECHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHH-HHHHH T ss_conf 17988889999865-----9978--99532332088999999987698699996487640366-61675 No 21 >2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Probab=92.19 E-value=0.67 Score=25.30 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=45.7 Q ss_pred CEEEEEEECC-C----------------HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCC---CC----HHHHHHHH Q ss_conf 9269997202-7----------------68899999980898886099899991700478867---89----99999998 Q gi|254780659|r 1 MRLLFLGDIV-G----------------KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFG---IT----EKIFCEMM 56 (274) Q Consensus 1 MkiLfiGDIv-G----------------~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~G---it----~~~~~~l~ 56 (274) ++|.+|+|+= + +-....+++.+..+. +.++||||.+|....++.- -. ....+.|. T Consensus 6 f~f~~isD~h~~~~~~~~~~~~~~~~~~~~s~~~l~~ai~~~~-~~~~dfVv~~GDl~d~~~~~~~~~~~~~~~~~~~~~ 84 (322) T 2nxf_A 6 FTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWR-RERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELD 84 (322) T ss_dssp EEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHH-HTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 7999983178777776523344303456666999999999973-379999999998788988523689999999999998 Q ss_pred HCCCCE-EEECHHHHCCCC Q ss_conf 379989-993426530222 Q gi|254780659|r 57 ETGIDV-ITTGNHVWDKRE 74 (274) Q Consensus 57 ~~GvDv-iT~GNH~wd~ke 74 (274) .+++.+ .+.|||-...-. T Consensus 85 ~~~~p~~~~~GNHD~~~~~ 103 (322) T 2nxf_A 85 ACSVDVHHVWGNHEFYNFS 103 (322) T ss_dssp TTCSEEEECCCHHHHHHCC T ss_pred HCCCCEEEECCCCCCCCCC T ss_conf 6599789826877522233 No 22 >3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Probab=90.61 E-value=0.96 Score=24.27 Aligned_cols=185 Identities=15% Similarity=0.115 Sum_probs=91.1 Q ss_pred CEEEEEEECC-CHH---------HHHHHHHHHHHHHH-HCCCCEEEECCEECCCCCCCCHHHHHHHH----HCCCCE-EE Q ss_conf 9269997202-768---------89999998089888-60998999917004788678999999998----379989-99 Q gi|254780659|r 1 MRLLFLGDIV-GKT---------GRSIVYEMLPRLIR-DFQLDFVIANGENSAGGFGITEKIFCEMM----ETGIDV-IT 64 (274) Q Consensus 1 MkiLfiGDIv-G~~---------Gr~~v~~~Lp~l~~-~~~~DfvIaNgENaa~G~Git~~~~~~l~----~~GvDv-iT 64 (274) |||+-|-|+= +.. -...+++.+..+++ +.++||||..|.-+-.| +++.|+.+. +.++.+ ++ T Consensus 1 M~I~~iSD~Hl~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~D~vv~tGDl~~~~---~~~~y~~~~~~l~~l~~p~~~v 77 (274) T 3d03_A 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCG---RPEEYQVARQILGSLNYPLYLI 77 (274) T ss_dssp CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSC---CHHHHHHHHHHHTTCSSCEEEE T ss_pred CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC---CHHHHHHHHHHHHHHCCCEEEE T ss_conf 9899991676798873101677899999999999983289999999887578899---8899999999998728878996 Q ss_pred ECHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEE--HHHCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 34265302220475421893897500798887540799984899289999960--0005883325989999999863413 Q gi|254780659|r 65 TGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIM--GRVFMNPLLDDPFRTADKILATCPL 142 (274) Q Consensus 65 ~GNH~wd~kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~--Gr~fM~~~~d~PF~~~d~~l~~~~~ 142 (274) .|||=+.. ...+++.... .+++....+.-+ .+.. .+.++..++-. |+.... ..+.-..-+++.|++. T Consensus 78 ~GNHD~~~-~~~~~~~~~~-----~~~~~~~~~~~~-~~~~-~~~~~i~ldt~~~~~~~~~-l~~~~l~wL~~~L~~~-- 146 (274) T 3d03_A 78 PGNHDDKA-LFLEYLQPLC-----PQLGSDANNMRC-AVDD-FATRLLFIDSSRAGTSKGW-LTDETISWLEAQLFEG-- 146 (274) T ss_dssp CCTTSCHH-HHHHHHGGGS-----GGGCSCGGGCCE-EECS-SSSEEEECCCCCTTCSSBC-CCHHHHHHHHHHHHHH-- T ss_pred CCCCCHHH-HHHHHHHHHC-----CCCCCCCCCEEE-EEEC-CCEEEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHC-- T ss_conf 78863467-8898765430-----123567786269-9954-8758984257767887640-1599999999998751-- Q ss_pred CCCCCEEEEECCC-----CCHHHH------HHHHHHHC--CCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCC Q ss_conf 6899889996257-----622899------99997608--9577998069762465456403672898405601 Q gi|254780659|r 143 KEQADVIVFDFHA-----ETTSEK------QCFAHFVD--SRASLVVGTHTHIPTADAQILDGGTGYITDLGMC 203 (274) Q Consensus 143 ~~~~~~i~VDfHa-----EaTSEK------~A~g~~lD--GrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMt 203 (274) .+.+.+++=.|. ...+++ .+|.-.+. ..|.+|+-=|+|.+.. ... +|+.|+|--|.| T Consensus 147 -~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~~~l~~~l~~~~~V~~vl~GH~H~~~~--~~~-~gi~~~~~pst~ 216 (274) T 3d03_A 147 -GDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTM--TQY-RQALISTLPGTV 216 (274) T ss_dssp -TTSCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHHHCTTEEEEEECSSSSCEE--EEE-TTEEEEECCCSS T ss_pred -CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHH--EEE-CCEEEEECCCCH T ss_conf -0663499994387467886545424668999999998379932999885480350--699-999999848415 No 23 >2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Probab=90.24 E-value=0.8 Score=24.80 Aligned_cols=130 Identities=17% Similarity=0.246 Sum_probs=75.2 Q ss_pred CEEEEEEECCCHHHH----HHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE-EECHHHHCCCCH Q ss_conf 926999720276889----999998089888609989999170047886789999999983799899-934265302220 Q gi|254780659|r 1 MRLLFLGDIVGKTGR----SIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI-TTGNHVWDKREA 75 (274) Q Consensus 1 MkiLfiGDIvG~~Gr----~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei 75 (274) ||||.|+|+=|..-. +.+.+.+ -++|.||-=|.-. +++..+.|.+.+..++ -.|||= ..++ T Consensus 23 ~rIliiSDtH~~~~~~~l~~~i~~~~------~~~D~iih~GD~~------~~~~l~~l~~~~~~v~~V~GN~D--~~~~ 88 (178) T 2kkn_A 23 KRFLLISDSHVPVRMASLPDEILNSL------KEYDGVIGLGDYV------DLDTVILLEKFSKEFYGVHGNMD--YPDV 88 (178) T ss_dssp EEEEEECCCCBTTTTCCCCHHHHHGG------GGCSEEEESSCBS------CHHHHHHHHHHTSSEEECCCSSS--CGGG T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHH------CCCCEEEECCCCC------CHHHHHHHHHCCCCEEEEECCCC--CHHH T ss_conf 29999967898864102569999874------4789999999986------67578998730798799989978--6788 Q ss_pred HHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 47542189389750079888754079998489928999996000058833259899999998634136899889996257 Q gi|254780659|r 76 LVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHA 155 (274) Q Consensus 76 ~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa 155 (274) ... +|.. .+++. +|.+|+++. | ..-|....+.+++. T Consensus 89 ~~~------------lp~~------~~~~i-~g~~i~l~H--G-------~~~~~~~~~~~~~~---------------- 124 (178) T 2kkn_A 89 KEH------------LPFS------KVLLV-EGVTIGMCH--G-------WGAPWDLKDRLLKV---------------- 124 (178) T ss_dssp GGT------------SCSC------EEEEE-TTEEEEECC--S-------CCCHHHHHHHHHHH---------------- T ss_pred HHH------------CCCE------EEEEE-CCEEEEEEC--C-------CCCCCCHHHHHHHH---------------- T ss_conf 851------------9824------79998-886999983--8-------88875136788875---------------- Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCC Q ss_conf 6228999999760895779980697624654564036728984056013 Q gi|254780659|r 156 ETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCG 204 (274) Q Consensus 156 EaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG 204 (274) ....+..++==|||+|.... .+|+- +-.-|.+| T Consensus 125 ------------~~~~~divi~GHTH~~~~~~---~~~~~-iiNPGS~~ 157 (178) T 2kkn_A 125 ------------FNEKPQVILFGHTHEPEDTV---KAGVR-FLNPGSLA 157 (178) T ss_dssp ------------SSSCCSEEECCSCSSCCEEE---ETTEE-EECCCCTT T ss_pred ------------HHCCCCEEEECCCCCCEEEE---ECCEE-EEECCCCC T ss_conf ------------21389889968856521899---89999-99798999 No 24 >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate esterase; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Probab=90.22 E-value=0.26 Score=27.93 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=64.5 Q ss_pred HHHHHHHHHHHCCCCEE-EECCEECCC-CCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHH--------HHH------ Q ss_conf 99980898886099899-991700478-86789999999983799899934265302220475--------421------ Q gi|254780659|r 18 VYEMLPRLIRDFQLDFV-IANGENSAG-GFGITEKIFCEMMETGIDVITTGNHVWDKREALVF--------SQR------ 81 (274) Q Consensus 18 v~~~Lp~l~~~~~~Dfv-IaNgENaa~-G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~--------i~~------ 81 (274) ..+.|+-|++ +++-.+ -++|++... ...-.++..+++.+.|. ..|||+|.......+ +.+ T Consensus 56 t~~il~~L~~-~~ikATFFv~G~~~~~~~~~~~p~~~k~~~~~Gh---eIgnHt~~H~~l~~ls~~~~~~ei~~~~~~l~ 131 (254) T 2iw0_A 56 TPQLLDILKQ-NDVRATFFVNGNNWANIEAGSNPDTIRRMRADGH---LVGSHTYAHPDLNTLSSADRISQMRQLEEATR 131 (254) T ss_dssp HHHHHHHHHH-HTCCCEEEECSBSSSBTTSTTHHHHHHHHHHTTC---EEEECCSSCCCGGGSCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHCHHHHHHHHHCCC---EEEECCCCCCCHHHCCHHHHHHHHHHHHHHHH T ss_conf 9999999997-7993899996876564335569999999997798---88850677887433065888899999999988 Q ss_pred -----CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC Q ss_conf -----8938975007988875407999848992899999600005883325989999999863413689988999625 Q gi|254780659|r 82 -----HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFH 154 (274) Q Consensus 82 -----~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfH 154 (274) .++..|| |-+.-.....-.-...|.++.--|+-..-+..+..+.+..+++++.+.+......+-.+|-+| T Consensus 132 ~~~G~~p~~fR~---PyG~~~~~~~~~l~~~G~~~v~w~~dt~Dw~~~~~~~~~~~~~~i~~~~~~~~~~~g~IvL~H 206 (254) T 2iw0_A 132 RIDGFAPKYMRA---PYLSCDAGCQGDLGGLGYHIIDTNLDTKDYENNKPETTHLSAEKFNNELSADVGANSYIVLSH 206 (254) T ss_dssp HHHSCEESEECC---GGGCCCHHHHHHHHHTTCEEECCSEECCTTTSCSTTTHHHHHHHHHHHSCSCGGGCCEEEEEC T ss_pred HHHCCCCCEECC---CCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 861977511318---978769899999998699899555144212578986058999999999861348999799935 No 25 >2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A* Probab=89.55 E-value=1.2 Score=23.72 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=101.5 Q ss_pred EEEEEEECCCHHHHHHHHHHHHH-HHHHCCCCEEEECCEECCC-CCCCC----HH----HHHHHHHCCCC-EEEECHHHH Q ss_conf 26999720276889999998089-8886099899991700478-86789----99----99999837998-999342653 Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPR-LIRDFQLDFVIANGENSAG-GFGIT----EK----IFCEMMETGID-VITTGNHVW 70 (274) Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~-l~~~~~~DfvIaNgENaa~-G~Git----~~----~~~~l~~~GvD-viT~GNH~w 70 (274) +++++||. |...... ..+.. .....++|||+-.|.++-. |..-. .. ..+.+ ...+- ..+.|||=. T Consensus 121 ~f~~~GD~-g~~~~~~--~~~~~~~~~~~~pdfvl~~GD~~y~d~~~~~~~~~wd~~~~~~~~~-~~~iP~~~~~GNHE~ 196 (424) T 2qfp_A 121 TFGLIGDL-GQSFDSN--TTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERS-VAYQPWIWTAGNHEI 196 (424) T ss_dssp EEEEECSC-TTBHHHH--HHHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHH-HTTSCEEECCCHHHH T ss_pred EEEEECCC-CCCCCHH--HHHHHHHHCCCCCCEEEEECCEEECCCCCCCCHHHHHHHHHHHHHH-HHCCCEEECCCCCCC T ss_conf 46556368-8776447--7898898655687659980437650555663036888999888788-722965870676532 Q ss_pred CC------CCHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 02------220475421893897500798887540799984899289999960000588332598999999986341368 Q gi|254780659|r 71 DK------REALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKE 144 (274) Q Consensus 71 d~------kei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~ 144 (274) +. .+-+... ..+.-.|.|.+... ...|..|+. ++..+.++| ....... -+.=+.-+++-|+... +. T Consensus 197 ~~~~~~~~~~~~~~~--~~~f~~p~~~~~~~-~~~yYsfd~-G~v~fi~ld--s~~~~~~-~~~Q~~WL~~dL~~~~-r~ 268 (424) T 2qfp_A 197 EFAPEINETEPFKPF--SYRYHVPYEASQST-SPFWYSIKR-ASAHIIVLS--SYSAYGR-GTPQYTWLKKELRKVK-RS 268 (424) T ss_dssp CCBGGGTBCSTTHHH--HHHCCCCGGGGTCS-STTSEEEEE-TTEEEEECC--TTSCCST-TSHHHHHHHHHHHHCC-TT T ss_pred CCCCCCCCCCCCEEE--ECCCCCCCCCCCCC-CCCEEEEEE-CCEEEEECC--CCCCCCC-CCHHHHHHHHHHHHHH-CC T ss_conf 257655667464044--21135776666788-875699987-888899614--7446775-4599999999987531-25 Q ss_pred CCCEEEEECCCCC---------HHHH--HH-HHHHHCCCEEEEEECCCCCCC-----CHHH-----------HCCCCEEE Q ss_conf 9988999625762---------2899--99-997608957799806976246-----5456-----------40367289 Q gi|254780659|r 145 QADVIVFDFHAET---------TSEK--QC-FAHFVDSRASLVVGTHTHIPT-----ADAQ-----------ILDGGTGY 196 (274) Q Consensus 145 ~~~~i~VDfHaEa---------TSEK--~A-~g~~lDGrVsaVvGTHTHV~T-----aD~r-----------ILp~GTay 196 (274) .++.+||=+|-=. .++. .+ ...+..-+|.+|+--|.|.=. .+.+ -=|+||-| T Consensus 269 ~~~w~iv~~H~P~ys~~~~~~~~~~~~r~~~~~lf~ky~Vdlvl~GH~H~Y~Rt~pi~~~~~~~~~~~~~~~~~~~g~vy 348 (424) T 2qfp_A 269 ETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVY 348 (424) T ss_dssp TCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTTCSEEEECSSSSEEEECSEECCCCCSSSCCCSCEECTTSCEE T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 79869999688865458788766678999999999971975999698567110001227730124785443469998799 Q ss_pred EECCCCCCCHHH Q ss_conf 840560137121 Q gi|254780659|r 197 ITDLGMCGDYNS 208 (274) Q Consensus 197 iTDvGMtG~~~S 208 (274) |+ +|.-|.+.+ T Consensus 349 iv-~G~gG~~~~ 359 (424) T 2qfp_A 349 IT-IGDAGNYGV 359 (424) T ss_dssp EE-ECCSCTTSC T ss_pred EE-ECCCCCCCC T ss_conf 99-856768654 No 26 >2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A} Probab=88.97 E-value=0.65 Score=25.35 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=52.2 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE-EECHHHH Q ss_conf 926999720276889999998089888609989999170047886789999999983799899-9342653 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI-TTGNHVW 70 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi-T~GNH~w 70 (274) |++.+||||=|.. +.+++.|.++.-..+-|-+|.-|.-...|-. +.++.+.+++.+-.++ .+|||=. T Consensus 1 M~~yvIGDIHG~~--~~l~~lL~~i~~~~~~D~Lv~lGD~iDRGpd-s~~vl~~~~~l~~~~~~v~GNHE~ 68 (280) T 2dfj_A 1 MATYLIGDVHGCY--DELIALLHKVEFTPGKDTLWLTGDLVARGPG-SLDVLRYVKSLGDSVRLVLGNHDL 68 (280) T ss_dssp -CEEEECCCCSCH--HHHHHHHHHTTCCTTTCEEEECSCCSSSSSC-HHHHHHHHHHTGGGEEECCCHHHH T ss_pred CCEEEEEECCCCH--HHHHHHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHHCCCCCCCCCCCHHH T ss_conf 9889998156899--9999999963999888889992645269979-899999999704464203553467 No 27 >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} Probab=88.71 E-value=0.59 Score=25.65 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=41.1 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH---HCCCEEEEEECCCCCCCCHHHHCCC Q ss_conf 259899999998634136899889996257622899999976---0895779980697624654564036 Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHF---VDSRASLVVGTHTHIPTADAQILDG 192 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~---lDGrVsaVvGTHTHV~TaD~rILp~ 192 (274) .++|...++.+.+. .++.|. ||.|++..-..+-.+ ..-++..++.-.|.+.+-. .+|+. T Consensus 95 v~~P~~~i~~~~~~-----g~d~I~--~H~E~~~~~~~~i~~ik~~g~k~Glalnp~T~i~~l~-~~l~~ 156 (246) T 3inp_A 95 VKPVDALIESFAKA-----GATSIV--FHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLK-YVESN 156 (246) T ss_dssp CSSCHHHHHHHHHH-----TCSEEE--ECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGT-TTGGG T ss_pred CCCHHHHHHHHHHC-----CCCEEE--EECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHHH T ss_conf 07999999999867-----997999--8420210899999999981981799963777899998-87640 No 28 >3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Probab=87.49 E-value=1.6 Score=22.85 Aligned_cols=176 Identities=15% Similarity=0.215 Sum_probs=87.0 Q ss_pred CEEEEEEECC-CH---------HHHHHHHHHHHHHHHH-CCCCEEEECCEECCCCCCCCHHHHHH---HH-----HCCCC Q ss_conf 9269997202-76---------8899999980898886-09989999170047886789999999---98-----37998 Q gi|254780659|r 1 MRLLFLGDIV-GK---------TGRSIVYEMLPRLIRD-FQLDFVIANGENSAGGFGITEKIFCE---MM-----ETGID 61 (274) Q Consensus 1 MkiLfiGDIv-G~---------~Gr~~v~~~Lp~l~~~-~~~DfvIaNgENaa~G~Git~~~~~~---l~-----~~GvD 61 (274) |+|+-|-|+= +. .-+..+++.|..+.+. .++|+||..|.=+-.|. ++.|++ ++ ..++. T Consensus 26 ~~i~hiSD~Hl~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~pD~vvitGDl~~~g~---~~~y~~~~~~l~~~~~~~~~p 102 (330) T 3ib7_A 26 YVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGE---PAAYRKLRGLVEPFAAQLGAE 102 (330) T ss_dssp EEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCC---HHHHHHHHHHHHHHHHHHTCE T ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC---HHHHHHHHHHHHHHHHHCCCC T ss_conf 89999788870898763125749999999999999822989999998987789999---999999999999987524997 Q ss_pred E-EEECHHHHCCCC-HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC---CCCCHHHHHHHH Q ss_conf 9-993426530222-04754218938975007988875407999848992899999600005883---325989999999 Q gi|254780659|r 62 V-ITTGNHVWDKRE-ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNP---LLDDPFRTADKI 136 (274) Q Consensus 62 v-iT~GNH~wd~ke-i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~---~~d~PF~~~d~~ 136 (274) + +..|||= .+. ...++.... +. . +.-...+.. ++..+.+++-. +.... ..+.-+.-+++. T Consensus 103 v~~v~GNHD--~~~~~~~~~~~~~--------~~-~-~~~~~~~~~-~~~~~~~ldt~--~~~~~~G~~~~~ql~wL~~~ 167 (330) T 3ib7_A 103 LVWVMGNHD--DRAELRKFLLDEA--------PS-M-APLDRVCMI-DGLRIIVLDTS--VPGHHHGEIRASQLGWLAEE 167 (330) T ss_dssp EEECCCTTS--CHHHHHHHHHCCC--------CC-C-SCCCEEEEE-TTEEEEECCCC--CTTCCSBCCCHHHHHHHHHH T ss_pred EEEECCCCC--CHHHHHHHHCCCC--------CC-C-CCCEEEEEE-CCCEEEECCCC--CCCCCCCCCCHHHHHHHHHH T ss_conf 799578776--4455544310136--------66-6-763047870-78326643666--67876885599999999998 Q ss_pred HHHCCCCCCCCEEEEECCCC---CH---------HHHHHHHHH-HCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCC Q ss_conf 86341368998899962576---22---------899999976-0895779980697624654564036728984056 Q gi|254780659|r 137 LATCPLKEQADVIVFDFHAE---TT---------SEKQCFAHF-VDSRASLVVGTHTHIPTADAQILDGGTGYITDLG 201 (274) Q Consensus 137 l~~~~~~~~~~~i~VDfHaE---aT---------SEK~A~g~~-lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvG 201 (274) |++. .+.. .+|=+|-- .. ....++.-. -.-+|.+|+-=|+|-+..-. . +|+-|++=-+ T Consensus 168 L~~~---~~~~-~iv~~HHpp~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~~~~~~--~-~Gi~~~~~ps 238 (330) T 3ib7_A 168 LATP---APDG-TILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNAT--F-VGIPVSVASA 238 (330) T ss_dssp TTSC---CTTC-EEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSSEEEEEECSSSSCEEEE--E-TTEEEEECCC T ss_pred HHHC---CCCC-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEEE--E-CCEEEEEECC T ss_conf 8647---7887-6999816985677753344334447999999974698199977788049379--9-9999999696 No 29 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=85.72 E-value=1.9 Score=22.35 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 9998089888609989999170047886789999999983799899934 Q gi|254780659|r 18 VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 18 v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274) +.+.+.++|++-+.-|+. ---.---.+-.+.+..+.|-++|+|+|-.| T Consensus 5 i~~~f~~~k~~~~~ali~-yi~aG~P~~~~~~~~l~~l~~~G~D~iEiG 52 (262) T 1rd5_A 5 VSDTMAALMAKGKTAFIP-YITAGDPDLATTAEALRLLDGCGADVIELG 52 (262) T ss_dssp HHHHHHHHHHTTCCEEEE-EEETTSSCHHHHHHHHHHHHHTTCSSEEEE T ss_pred HHHHHHHHHHCCCCEEEE-EEECCCCCHHHHHHHHHHHHHCCCCEEEEC T ss_conf 999999999759967999-972778997899999999997599999967 No 30 >1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3 Probab=85.60 E-value=1.3 Score=23.51 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=46.3 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHH Q ss_conf 26999720276889999998089888609989999170047886789999999983799899934265 Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHV 69 (274) Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~ 69 (274) ||++||||=|. ..++++.|..+......|-+|..|.=...| -...-.-+++..+--..-.|||= T Consensus 14 ri~vIgDIHG~--~~~L~~lL~~~~~~~~~d~lv~lGD~vDrG--p~s~~vl~~l~~~~~~~i~GNHE 77 (221) T 1g5b_A 14 NIWVVGDLHGC--YTNLMNKLDTIGFDNKKDLLISVGDLVDRG--AENVECLELITFPWFRAVRGNHE 77 (221) T ss_dssp CEEEECCCTTC--HHHHHHHHHHHTCCTTTCEEEECSCCSSSS--SCHHHHHGGGGSTTEEECCCHHH T ss_pred EEEEEECCCCC--HHHHHHHHHHCCCCCCCCEEEEECCCCCCC--CCCHHHHHHHHCCCCCCCCCCHH T ss_conf 79999400069--999999999748998777899917761568--87489999764434454678189 No 31 >1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Probab=84.99 E-value=2.1 Score=22.03 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=43.7 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHH----CCCCEEEECCEECCCCCCCCH-HHHHHHHHC----CCCEEEECHHH Q ss_conf 9269997202768899999980898886----099899991700478867899-999999837----99899934265 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRD----FQLDFVIANGENSAGGFGITE-KIFCEMMET----GIDVITTGNHV 69 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~----~~~DfvIaNgENaa~G~Git~-~~~~~l~~~----GvDviT~GNH~ 69 (274) ++|..||||=|.. .++++.|..+.+. .++|.+|..|.-.. +|-.+ +..+.|.+. .+ ..-.|||= T Consensus 2 ~~I~visDiHg~~--~~l~~~l~~i~~~~~~~~~~d~ii~lGDlvd--~Gp~~~e~~~~l~~l~~~~~~-~~i~GNHD 74 (252) T 1nnw_A 2 VYVAVLANIAGNL--PALTAALSRIEEMREEGYEIEKYYILGNIVG--LFPYPKEVIEVIKDLTKKENV-KIIRGKYD 74 (252) T ss_dssp CEEEEEECCTTCH--HHHHHHHHHHHHHHHTTCCEEEEEEESCSSS--SSSCHHHHHHHHHHHHHHSCE-EEECCHHH T ss_pred CEEEEEECCCCCH--HHHHHHHHHHHHHHCCCCCCCEEEEECCCCC--CCCCHHHHHHHHHHHHHCCCE-EEECCCCH T ss_conf 7899997303598--9999999999974325898778999378289--988869999999976551782-89638856 No 32 >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Probab=84.72 E-value=1 Score=24.14 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=37.0 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-HH-HHH--HHHCCCEEEEEECCCCCCCCHHHHCCC Q ss_conf 25989999999863413689988999625762289-99-999--760895779980697624654564036 Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSE-KQ-CFA--HFVDSRASLVVGTHTHIPTADAQILDG 192 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE-K~-A~g--~~lDGrVsaVvGTHTHV~TaD~rILp~ 192 (274) .++|...++.+.+. .++.+ =||.||+.+ .. .+. .-..=++..++--.|-+..-+ .+|+. T Consensus 66 v~~P~~~i~~~~~~-----ga~~i--~~H~Ea~~~~~~~~i~~i~~~g~~~Gialnp~T~~~~i~-~~l~~ 128 (231) T 3ctl_A 66 VTRPQDYIAQLARA-----GADFI--TLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMK-YYIHK 128 (231) T ss_dssp SSCGGGTHHHHHHH-----TCSEE--EECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGT-TTGGG T ss_pred ECCHHHHHHHHHHC-----CCCEE--EEEHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHCC T ss_conf 66888999999866-----99879--963254303599999999977987999956999705655-23133 No 33 >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Probab=84.18 E-value=0.2 Score=28.63 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=31.2 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH--HHH--HHHHHCCCEEEEEECCCCCCCC Q ss_conf 25989999999863413689988999625762289--999--9976089577998069762465 Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSE--KQC--FAHFVDSRASLVVGTHTHIPTA 185 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE--K~A--~g~~lDGrVsaVvGTHTHV~Ta 185 (274) ..+|-..++++.+. .++.|. ||.|+++. +.. ...-..-++..++.-.|.+..- T Consensus 73 v~~p~~~i~~~~~~-----g~~~i~--~H~E~~~~~~~~~i~~i~~~g~k~Gial~p~t~~~~~ 129 (228) T 1h1y_A 73 VTNPSDYVEPLAKA-----GASGFT--FHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEV 129 (228) T ss_dssp SSCGGGGHHHHHHH-----TCSEEE--EEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGG T ss_pred ECCHHHHHHHHHHC-----CCCEEE--EECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH T ss_conf 71657549999856-----997799--6050023589999999997497311584489988999 No 34 >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Probab=83.41 E-value=0.14 Score=29.77 Aligned_cols=58 Identities=19% Similarity=0.387 Sum_probs=38.1 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH---HHHHH--HHHCCCEEEEEECCCCCCCCHHHHCC Q ss_conf 25989999999863413689988999625762289---99999--76089577998069762465456403 Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSE---KQCFA--HFVDSRASLVVGTHTHIPTADAQILD 191 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE---K~A~g--~~lDGrVsaVvGTHTHV~TaD~rILp 191 (274) ..+|...++.+.+. .++.|. ||.|+++. +..+. .-..-++..++--.|.+..-.. +|+ T Consensus 77 v~~P~~~i~~~~~~-----g~d~i~--~H~E~~~~~~~~~~i~~ik~~g~k~Glal~p~T~~~~i~~-~l~ 139 (230) T 1rpx_A 77 IVEPDQRVPDFIKA-----GADIVS--VHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEY-VLD 139 (230) T ss_dssp SSSHHHHHHHHHHT-----TCSEEE--EECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTT-TTT T ss_pred EECHHHHHHHHHHH-----CCCEEE--EECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHH T ss_conf 96578769999871-----895367--5133344226999999999879869999689999899999-986 No 35 >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Probab=82.17 E-value=0.61 Score=25.53 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=36.0 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH---HHHHHH--HHCCCEEEEEECCCCCCCCHHHHCC Q ss_conf 25989999999863413689988999625762289---999997--6089577998069762465456403 Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSE---KQCFAH--FVDSRASLVVGTHTHIPTADAQILD 191 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE---K~A~g~--~lDGrVsaVvGTHTHV~TaD~rILp 191 (274) .++|...++.+.+. .++.+. ||.|+++. +..+.+ -..=++..++--.|.+..- +.+|+ T Consensus 71 v~~P~~~i~~~~~~-----g~~~i~--~H~E~~~~~~~~~~i~~ik~~g~k~Glal~p~T~i~~i-~~~l~ 133 (230) T 1tqj_A 71 IVEPEKYVEDFAKA-----GADIIS--VHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFL-EYVLP 133 (230) T ss_dssp SSSGGGTHHHHHHH-----TCSEEE--EECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGG-TTTGG T ss_pred EECHHHHHHHHHHC-----CCCEEE--EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHH-HHHHC T ss_conf 74789999999864-----897899--82454556468999999998699189997799987999-99865 No 36 >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum 3D7} SCOP: c.1.2.2 Probab=81.47 E-value=2 Score=22.24 Aligned_cols=57 Identities=11% Similarity=0.225 Sum_probs=33.0 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHH-----HHHHCCCEEEEEECCCCCCCCHHHH Q ss_conf 259899999998634136899889996257622899999-----9760895779980697624654564 Q gi|254780659|r 126 LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCF-----AHFVDSRASLVVGTHTHIPTADAQI 189 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~-----g~~lDGrVsaVvGTHTHV~TaD~rI 189 (274) ..+|...++. + .++....+-+|+|..+..... ..-..-++..++-..|.+......+ T Consensus 73 v~~p~~~i~~----~---~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l 134 (227) T 1tqx_A 73 VEYPEKYVPL----L---KTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPIL 134 (227) T ss_dssp SSCGGGGGGG----C---TTSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHH T ss_pred ECCHHHHCHH----H---HCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH T ss_conf 1674651546----6---425750589831145213099999999864974733148999989987554 No 37 >1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 1w24_A 2r17_A Probab=77.05 E-value=0.57 Score=25.76 Aligned_cols=140 Identities=18% Similarity=0.222 Sum_probs=74.7 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE-EECHHHHCCCCHHHHH Q ss_conf 926999720276889999998089888609989999170047886789999999983799899-9342653022204754 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI-TTGNHVWDKREALVFS 79 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei~~~i 79 (274) ||||.|.|+=+..=...+...+-++.++.++|.||.-|.-. +++.++.|.+...++. -.|||-++. T Consensus 11 MkI~vISDtH~~~~~~~l~~~~~~~~~~~~vD~iih~GDi~------~~~~~~~l~~~~~~v~~V~GN~D~~~------- 77 (192) T 1z2w_A 11 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLC------TKESYDYLKTLAGDVHIVRGDFDENL------- 77 (192) T ss_dssp CEEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCB------SHHHHHHHHHHCSEEEECCCTTCCCT------- T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCC------CHHHHHHHHHCCCCEEEEECCCCCCC------- T ss_conf 29999902788986201679999985316999999998998------77889988741873799916875222------- Q ss_pred HHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH Q ss_conf 21893897500798887540799984899289999960000588332598999999986341368998899962576228 Q gi|254780659|r 80 QRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTS 159 (274) Q Consensus 80 ~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTS 159 (274) ++|. ..+++. .|.++.++.- .-+. |. ..+ ..+.+.+++ .+ T Consensus 78 ----------~l~~------~~~~~~-~g~~i~~~Hg--~~~~-~~-~~~-~~l~~~~~~----~~-------------- 117 (192) T 1z2w_A 78 ----------NYPE------QKVVTV-GQFKIGLIHG--HQVI-PW-GDM-ASLALLQRQ----FD-------------- 117 (192) T ss_dssp ----------TSCS------EEEEEE-TTEEEEEECS--CCCC-BT-TCH-HHHHHHHHH----HS-------------- T ss_pred ----------CCCC------EEEEEE-CCCEEEEEEC--CCCC-CC-CCH-HHHHHHHHH----CC-------------- T ss_conf ----------6772------899997-8979999908--9767-66-588-999999873----58-------------- Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCC-CCCHHHC Q ss_conf 9999997608957799806976246545640367289840560-1371210 Q gi|254780659|r 160 EKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGM-CGDYNSS 209 (274) Q Consensus 160 EK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGM-tG~~~SV 209 (274) +..|+==|||+|.... -+|+-+ ---|- ++|+++. T Consensus 118 ------------~divi~GHTH~p~~~~---~~~~~i-iNPGS~~~pr~~~ 152 (192) T 1z2w_A 118 ------------VDILISGHTHKFEAFE---HENKFY-INPGSATGAYNAL 152 (192) T ss_dssp ------------SSEEECCSSCCCEEEE---ETTEEE-EECCCTTCCCCSS T ss_pred ------------CCEEEECCCCCCEEEE---ECCEEE-EECCCCCCCCCCC T ss_conf ------------9989978878503899---999999-9799888888898 No 38 >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Probab=75.10 E-value=4.5 Score=19.93 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=51.9 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHC-------------------------CCCEEEECCEECCCCCCCCHHHHHHH Q ss_conf 92699972027688999999808988860-------------------------99899991700478867899999999 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDF-------------------------QLDFVIANGENSAGGFGITEKIFCEM 55 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~-------------------------~~DfvIaNgENaa~G~Git~~~~~~l 55 (274) |||..|| +|+-|+...+. |.. ..+ .+|+||.-+ +-....+++.+. T Consensus 1 MkVgIIG--~G~iG~~v~~~-l~~--~~~el~~v~d~~~~~~~~~~~~de~l~~~~DvVie~a-----~~~a~~e~a~~~ 70 (236) T 2dc1_A 1 MLVGLIG--YGAIGKFLAEW-LER--NGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAA-----SQQAVKDYAEKI 70 (236) T ss_dssp CEEEEEC--CSHHHHHHHHH-HHH--TTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECS-----CHHHHHHHHHHH T ss_pred CEEEEEC--CCHHHHHHHHH-HHH--CCCEEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEC-----CCCCCHHHHHHH T ss_conf 9799995--88899999999-971--9988999996785022444899999438887899906-----974047999999 Q ss_pred HHCCCCEEEECHHHHCCCCHH----HHHH-HCCCEEEECCCCCCCCC Q ss_conf 837998999342653022204----7542-18938975007988875 Q gi|254780659|r 56 METGIDVITTGNHVWDKREAL----VFSQ-RHCKFLRPANYPPNTPG 97 (274) Q Consensus 56 ~~~GvDviT~GNH~wd~kei~----~~i~-~~~~ilRP~N~p~~~PG 97 (274) ++.|.|++++=-=....++.. +.-+ ...+++=|.+.-.+.+. T Consensus 71 L~~G~~vvv~S~galad~~~~~~L~~~A~~~g~~l~i~sGaigGld~ 117 (236) T 2dc1_A 71 LKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDA 117 (236) T ss_dssp HHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHH T ss_pred HHCCCCEEEEECHHHCCCHHHHHHHHHHHHCCCCEEECCCHHCCHHH T ss_conf 97399799962216317349999999998658837844200114489 No 39 >2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A* Probab=69.12 E-value=6.1 Score=19.05 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=35.6 Q ss_pred CEEEEEEECCCHHHHHHHHHHHH----------------HHHHH------------------CCCCEEEECCEECCCCCC Q ss_conf 92699972027688999999808----------------98886------------------099899991700478867 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLP----------------RLIRD------------------FQLDFVIANGENSAGGFG 46 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp----------------~l~~~------------------~~~DfvIaNgENaa~G~G 46 (274) |||+.+|= |..|+.+.+. |. ++++. -+.|+|| |++ |.. T Consensus 17 mki~vlG~--G~vG~~~~~~-L~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~d~Vi----~~~-~~~ 88 (365) T 2z2v_A 17 MKVLILGA--GNIGRAIAWD-LKDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVI----GAL-PGF 88 (365) T ss_dssp CEEEEECC--SHHHHHHHHH-HTTTSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSCEE----ECC-CHH T ss_pred CEEEEECC--CHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCEEE----ECC-CCC T ss_conf 57999997--5999999999-864798699987788899877427736873499999999973589999----967-851 Q ss_pred CCHHHHHHHHHCCCCEEEEC Q ss_conf 89999999983799899934 Q gi|254780659|r 47 ITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 47 it~~~~~~l~~~GvDviT~G 66 (274) ....+++...++|+++++.. T Consensus 89 ~~~~v~~~~~~~g~~yiD~~ 108 (365) T 2z2v_A 89 LGFKSIKAAIKSKVDMVDVS 108 (365) T ss_dssp HHHHHHHHHHHTTCCEEECC T ss_pred CHHHHHHHHHHCCCCCCCCC T ss_conf 02589999875285221122 No 40 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=65.30 E-value=7.3 Score=18.57 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=43.8 Q ss_pred HHHHHHHHHCCCCEEEECCEE-CCCC------------CCCCHHH---------HHHH-HHCCCCEEEECHHHH-CCCCH Q ss_conf 980898886099899991700-4788------------6789999---------9999-837998999342653-02220 Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGEN-SAGG------------FGITEKI---------FCEM-METGIDVITTGNHVW-DKREA 75 (274) Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgEN-aa~G------------~Git~~~---------~~~l-~~~GvDviT~GNH~w-d~kei 75 (274) +.|-++-+++++|+||+..|. .+.| +|.+++. ++++ .++|+- |.--..+ +..|. T Consensus 51 ~~i~~~~~~~~idlvivGpE~pL~~gl~d~l~~~gi~v~Gp~~~~a~le~sK~~~k~~m~~~gIp--t~~~~~~~~~~ea 128 (417) T 2ip4_A 51 EALADWALAEGIDLTLVGPEAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIP--TARYRVFREPLEA 128 (417) T ss_dssp HHHHHHHHHHTCCEEEECSSHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCC--BCCEEEESSHHHH T ss_pred HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCC--CCCCEEEECHHHH T ss_conf 99999999859999998974788878899998579976587077888776789999999981989--8885499358999 Q ss_pred HHHHHH--CCCEEEECCCCCCCCCCCEEEE Q ss_conf 475421--8938975007988875407999 Q gi|254780659|r 76 LVFSQR--HCKFLRPANYPPNTPGNGSGLY 103 (274) Q Consensus 76 ~~~i~~--~~~ilRP~N~p~~~PG~G~~i~ 103 (274) ..++++ .|-+++|.-. +-|+|..+. T Consensus 129 ~~~~~~~~~P~ViKp~~~---a~gkGv~i~ 155 (417) T 2ip4_A 129 LAYLEEVGVPVVVKDSGL---AAGKGVTVA 155 (417) T ss_dssp HHHHHHHCSSEEEECTTS---CSSTTCEEE T ss_pred HHHHHHCCCCEEEECCCC---CCCCCEEEE T ss_conf 999997699889972787---898764664 No 41 >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Probab=65.09 E-value=7.2 Score=18.60 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=31.3 Q ss_pred HHHHHHHHHHCCCCEE-EECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCH Q ss_conf 9980898886099899-99170047886789999999983799899934265302220 Q gi|254780659|r 19 YEMLPRLIRDFQLDFV-IANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREA 75 (274) Q Consensus 19 ~~~Lp~l~~~~~~Dfv-IaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei 75 (274) .+.|+-|++. ++-.+ -++|.+.+. -.++..+++.+.| .+.|||+|++... T Consensus 123 ~~iL~~L~~~-~v~ATFFv~G~~i~~---~~~~~~k~~~~~G---heIgnHt~~H~~~ 173 (311) T 2w3z_A 123 PKILDVLAQQ-HVHATFFLVGCNITD---KVKPILQRQITEG---HALGIHSFSHVYS 173 (311) T ss_dssp HHHHHHHHHT-TCCCEEEECGGGCCG---GGHHHHHHHHHTT---CEEEECCSSCCHH T ss_pred HHHHHHHHHC-CCCEEEEECCCCHHH---CHHHHHHHHHHCC---CEEEEECCCCCCC T ss_conf 9999999985-997899825743434---5699999999749---8898303514431 No 42 >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83} Probab=62.60 E-value=8 Score=18.31 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=14.4 Q ss_pred CEEEEEEECCCHHHHHHHHHH Q ss_conf 926999720276889999998 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEM 21 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~ 21 (274) +||..+| .|+-|+..++.. T Consensus 10 irv~iiG--~G~mG~~~~~~l 28 (304) T 3bio_A 10 IRAAIVG--YGNIGRYALQAL 28 (304) T ss_dssp EEEEEEC--CSHHHHHHHHHH T ss_pred CEEEEEC--CCHHHHHHHHHH T ss_conf 4799989--869999999999 No 43 >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Probab=61.96 E-value=8.4 Score=18.17 Aligned_cols=42 Identities=31% Similarity=0.469 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 99998089888609989999170047886789999999983799899934 Q gi|254780659|r 17 IVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 17 ~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274) .+.+.+.++|+.+.++ ||+ -|. -|++.+++|.++|+|.|--| T Consensus 132 ~~~~~ik~~r~~~~~~-vi~--GNV-----aT~e~a~~L~~aGAD~VkVG 173 (361) T 3khj_A 132 NIIRTLKEIKSKMNID-VIV--GNV-----VTEEATKELIENGADGIKVG 173 (361) T ss_dssp HHHHHHHHHHHHCCCE-EEE--EEE-----CSHHHHHHHHHTTCSEEEEC T ss_pred HHHHHHHHHHHCCCCC-EEE--CCC-----CCHHHHHHHHHCCCCEEEEC T ss_conf 8999999986027988-686--553-----88899999997199889973 No 44 >2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Probab=61.57 E-value=3.9 Score=20.32 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=80.0 Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE-EECHHHHCCCCHHHHHHH Q ss_conf 6999720276889999998089888609989999170047886789999999983799899-934265302220475421 Q gi|254780659|r 3 LLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI-TTGNHVWDKREALVFSQR 81 (274) Q Consensus 3 iLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei~~~i~~ 81 (274) ||.|||+=...-...+-..+.++-+.-++|.||.-|.=. +++.++.|.+.+.++. -.|||=....+.... T Consensus 28 ilvIsDtHip~r~~~lp~~~~~~l~~~kvD~Iih~GDi~------~~e~l~~L~~l~~~v~~V~GN~D~~~~~~~~~--- 98 (215) T 2a22_A 28 VLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVC------SQEYVEMLKNITKNVYIVSGDLDSAIFNPDPE--- 98 (215) T ss_dssp EEEECCCCTTTTCSSCCGGGHHHHHCTTCCEEEECSCCC------CHHHHHHHHHHCSCEEECCCTTCCSCCBCCGG--- T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC------CHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH--- T ss_conf 999916788764014549999984746889899899999------98999999964997699837867101002278--- Q ss_pred CCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH Q ss_conf 89389750079888754079998489928999996000058833259899999998634136899889996257622899 Q gi|254780659|r 82 HCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEK 161 (274) Q Consensus 82 ~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK 161 (274) .. ..+|. ..+++. +|.++.++. |.-+. | ..+| ..+..+..+ T Consensus 99 ~~-----~~lP~------~~~~~~-~g~~i~l~H--g~~~~-p-~~~~-~~l~~~~~~---------------------- 139 (215) T 2a22_A 99 SN-----GVFPE------YVVVQI-GEFKIGLMH--GNQVL-P-WDDP-GSLEQWQRR---------------------- 139 (215) T ss_dssp GT-----BCCCS------EEEEEE-TTEEEEEEC--STTSS-S-TTCH-HHHHHHHHH---------------------- T ss_pred HH-----HHCCC------CEEEEE-CCEEEEEEC--CCCCC-C-CCCH-HHHHHHHHC---------------------- T ss_conf 89-----76998------179999-999999977--98656-6-5357-899998750---------------------- Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHH Q ss_conf 99997608957799806976246545640367289840560137121 Q gi|254780659|r 162 QCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNS 208 (274) Q Consensus 162 ~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~S 208 (274) ..+..++==|||+|.... -+|+-++--==.||++++ T Consensus 140 --------~~~dvvv~GHTH~p~~~~---~~g~l~iNPGS~~~~r~~ 175 (215) T 2a22_A 140 --------LDCDILVTGHTHKLRVFE---KNGKLFLNPGTATGAFSA 175 (215) T ss_dssp --------HTCSEEEECSSCCCEEEE---ETTEEEEECCCSSCCCCT T ss_pred --------CCCCEEEECCCCCCCEEE---ECCEEEEECCCCCCCCCC T ss_conf --------289989979989764799---999999948987777778 No 45 >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, structural genomics, joint center for structural genomics, JCSG; 1.91A {Haemophilus somnus 129PT} Probab=61.41 E-value=8.6 Score=18.11 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=40.5 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCC------------CEEEEEECCCCCCCCHHHHCCC Q ss_conf 3259899999998634136899889996257622899999976089------------5779980697624654564036 Q gi|254780659|r 125 LLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDS------------RASLVVGTHTHIPTADAQILDG 192 (274) Q Consensus 125 ~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDG------------rVsaVvGTHTHV~TaD~rILp~ 192 (274) ..++|...++.+.+. .++. |=||.||+..-...-.++.. ++..++--.|.+..-. .+|+. T Consensus 77 Mv~~P~~~i~~~~~~-----g~d~--I~~H~E~~~~~~~~i~~i~~~~~~~~~~~~~i~~Glalnp~T~~~~i~-~~l~~ 148 (237) T 3cu2_A 77 MVRNQLEVAKAVVAN-----GANL--VTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELE-PYLDQ 148 (237) T ss_dssp ECSCHHHHHHHHHHT-----TCSE--EEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGT-TTTTT T ss_pred EEECCCCCHHHHHHC-----CCCE--EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHH-HHHCC T ss_conf 996352017899757-----9968--998452456789999999876666676551314304507999899999-76455 No 46 >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Probab=59.65 E-value=3.8 Score=20.41 Aligned_cols=89 Identities=10% Similarity=0.157 Sum_probs=52.0 Q ss_pred CEEEEEEECCCHHHHHHHHHHH--------------------HHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCC Q ss_conf 9269997202768899999980--------------------89888609989999170047886789999999983799 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEML--------------------PRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~L--------------------p~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~Gv 60 (274) |||..+| +|+-|+..++..- ..+-....+|+||-=. +--...+++.+.++.|+ T Consensus 13 mrV~iiG--~G~~G~~v~~~~~~~~v~v~~r~~~~~~~~~~~~~~~~~~~~DvVve~~-----~~~~~~~~~~~al~~g~ 85 (253) T 1j5p_A 13 MTVLIIG--MGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECA-----SPEAVKEYSLQILKNPV 85 (253) T ss_dssp CEEEEEC--CSHHHHHHHHHSCCSEEEEECSSCCCCSSSEECSSCCCCTTCCEEEECS-----CHHHHHHHHHHHTTSSS T ss_pred CEEEEEC--CCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHCCCCCCEEEECC-----CCHHHHHHHHHHHHCCC T ss_conf 8899998--7889999999861084799925777666757878861657998999858-----80799999999997399 Q ss_pred CEEEECHHHHCCC----CHHHHHHH-CCCEEEECCCCCCCC Q ss_conf 8999342653022----20475421-893897500798887 Q gi|254780659|r 61 DVITTGNHVWDKR----EALVFSQR-HCKFLRPANYPPNTP 96 (274) Q Consensus 61 DviT~GNH~wd~k----ei~~~i~~-~~~ilRP~N~p~~~P 96 (274) ++++.=-=..+.. ++.+.-++ ..+++-|.|+.-+.+ T Consensus 86 ~vv~~s~g~~~~~~~~~~l~~~a~~~~~~i~~~~~~~~G~d 126 (253) T 1j5p_A 86 NYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLD 126 (253) T ss_dssp EEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCCHH T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCEEECCH T ss_conf 79998364245731599999999972993995563152753 No 47 >2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A Probab=59.35 E-value=9.3 Score=17.88 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=33.5 Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCH Q ss_conf 998089888609989999170047886789999999983799899934265302220 Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREA 75 (274) Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei 75 (274) .+.|+-|++..-.----++|+++.. .+...+++.+.|- ..|||+|++..+ T Consensus 252 ~~iLdiL~k~~vkATFFv~G~~~~~----~p~~vr~i~~~GH---eIGnHt~sH~~l 301 (431) T 2c1i_A 252 PQVLETLAKYDIKATFFVLGKNVSG----NEDLVKRIKSEGH---VVGNHSWSHPIL 301 (431) T ss_dssp HHHHHHHHHTTCCCEEEECGGGTTT----CHHHHHHHHHTTC---EEEECCSSCCCG T ss_pred HHHHHHHHHCCCCEEEEECHHHHHH----CHHHHHHHHHCCC---EEECCCCCCCCC T ss_conf 9999999973992999973785537----9999999997799---998588887561 No 48 >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A* Probab=56.01 E-value=11 Score=17.53 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=90.5 Q ss_pred HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCC-CHHHHHHHCCCEEEECCCCCCCC Q ss_conf 99980898886099899991700478867899999999837998999342653022-20475421893897500798887 Q gi|254780659|r 18 VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKR-EALVFSQRHCKFLRPANYPPNTP 96 (274) Q Consensus 18 v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~k-ei~~~i~~~~~ilRP~N~p~~~P 96 (274) +.+.+.++|++++.-+|+----|-.-.+|+ .+-++++.++|||.+-.=+--|+.. ++.+...+..--+-|+=-| .+| T Consensus 79 ~~~~~~~~r~~~~~p~vlM~Y~N~~~~~G~-~~F~~~~~~aGvdG~iipDLP~ee~~~~~~~~~~~gl~~I~lvaP-tt~ 156 (271) T 1ujp_A 79 ALELVREVRALTEKPLFLMTYLNPVLAWGP-ERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAP-TST 156 (271) T ss_dssp HHHHHHHHHHHCCSCEEEECCHHHHHHHCH-HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECT-TCC T ss_pred HHHHHHHHHHCCCCCEEEEEECCHHHHCCH-HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC-CCC T ss_conf 999999986237975599984442441673-788899987398423247785221378999998569867999478-885 Q ss_pred CCC-EEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEE Q ss_conf 540-7999848992899999600005883325989999999863413689988999625762289999997608957799 Q gi|254780659|r 97 GNG-SGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLV 175 (274) Q Consensus 97 G~G-~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrVsaV 175 (274) -.- -.+....+|. |=++.++|.+..+..+ | ..+++.++.++...+. -+.|-| +=.|.|..++.++.|| +| T Consensus 157 ~~Ri~~i~~~s~gF-iY~vs~~GvTG~~~~~--~-~~~~~~i~~ik~~t~~-Pv~vGF-GI~t~e~~~~~~~ADG---vI 227 (271) T 1ujp_A 157 DARIATVVRHATGF-VYAVSVTGVTGMRERL--P-EEVKDLVRRIKARTAL-PVAVGF-GVSGKATAAQAAVADG---VV 227 (271) T ss_dssp HHHHHHHHTTCCSC-EEEECC---------------CCHHHHHHHHTTCCS-CEEEES-CCCSHHHHHHHTTSSE---EE T ss_pred HHHHHHHHHHCCCE-EEEEECCCCCCCCCCC--C-HHHHHHHHHHHCCCCC-CEEEEC-CCCCHHHHHHHCCCCE---EE T ss_conf 78999999739870-7884036777766555--2-3589999875105689-759980-7798899987468998---99 Q ss_pred EECCC Q ss_conf 80697 Q gi|254780659|r 176 VGTHT 180 (274) Q Consensus 176 vGTHT 180 (274) |||+- T Consensus 228 VGSa~ 232 (271) T 1ujp_A 228 VGSAL 232 (271) T ss_dssp ECHHH T ss_pred ECHHH T ss_conf 85999 No 49 >1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A* Probab=54.96 E-value=11 Score=17.42 Aligned_cols=111 Identities=23% Similarity=0.328 Sum_probs=69.1 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCCEEEECHHHHCCCCHHHHHHHCCCEEEECCCCC Q ss_conf 9999998089888609989999170047886789999999983-799899934265302220475421893897500798 Q gi|254780659|r 15 RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGIDVITTGNHVWDKREALVFSQRHCKFLRPANYPP 93 (274) Q Consensus 15 r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p~ 93 (274) ...+.+.+-...++|++||+|+-+-|++- -.|+-++|+++ .|+-+|--|+-.--+ ..+.+++ T Consensus 49 ~e~~~~~~~~~~~~~~pDf~I~isPN~~~---PGP~~ARE~l~~~~iP~IvI~D~p~~K--~kd~l~~------------ 111 (283) T 1qv9_A 49 VEAAVEMALDIAEDFEPDFIVYGGPNPAA---PGPSKAREMLADSEYPAVIIGDAPGLK--VKDEMEE------------ 111 (283) T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECSCTTS---HHHHHHHHHHHTSSSCEEEEEEGGGGG--GHHHHHH------------ T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCHHHHHHHHHCCCCEEEECCCCCHH--HHHHHHH------------ T ss_conf 99999887778874089989997899889---995679999974799879982786344--6899986------------ Q ss_pred CCCCCCEEEEECCCCCEEEEEEEEH--HHCCCCCC--------------CCHHH----HHHHHHHHCCCCC----CCCEE Q ss_conf 8875407999848992899999600--00588332--------------59899----9999986341368----99889 Q gi|254780659|r 94 NTPGNGSGLYCAKNGSNVLVANIMG--RVFMNPLL--------------DDPFR----TADKILATCPLKE----QADVI 149 (274) Q Consensus 94 ~~PG~G~~i~~~~~g~ki~Vinl~G--r~fM~~~~--------------d~PF~----~~d~~l~~~~~~~----~~~~i 149 (274) .|.||.|... + - ++| |-|++|.- ---|+ .+|+++++++.++ +-+-| T Consensus 112 --~g~GYIivk~-D-p------MIGArREFLDP~EMa~fNaD~~kVLa~tG~~RlvQ~elD~vi~~v~~Gk~~e~~LP~i 181 (283) T 1qv9_A 112 --QGLGYILVKP-D-A------MLGARREFLDPVEMAIYNADLMKVLAATGVFRVVQEAFDELIEKAKEDEISENDLPKL 181 (283) T ss_dssp --TTCEEEEETT-S-C------CCCCCTTTCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTCCCGGGSCEE T ss_pred --CCCCEEEEEC-C-C------CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE T ss_conf --5984799836-7-6------4440121148899987303699999863089999999999999986577676668717 Q ss_pred EEE Q ss_conf 996 Q gi|254780659|r 150 VFD 152 (274) Q Consensus 150 ~VD 152 (274) +++ T Consensus 182 v~~ 184 (283) T 1qv9_A 182 VID 184 (283) T ss_dssp EEC T ss_pred EEC T ss_conf 874 No 50 >3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Probab=54.78 E-value=11 Score=17.40 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=29.7 Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCC Q ss_conf 598999999986341368998899962---57622899999976089577998069762465456403672898405601 Q gi|254780659|r 127 DDPFRTADKILATCPLKEQADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMC 203 (274) Q Consensus 127 d~PF~~~d~~l~~~~~~~~~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMt 203 (274) +|.-.++..+++. .-.+.+||| |+.-|.| .+|-|.+|- .+-.|.|- +. +-||+...|+|.- T Consensus 148 NnvAiAa~~l~~~-----~~RVlIvD~DvHHGnGTq~----iF~~d~~Vl-~~S~H~~~-----~~-~pgtg~~~e~G~g 211 (367) T 3max_A 148 NDIVLAILELLKY-----HQRVLYIDIDIHHGDGVEE----AFYTTDRVM-TVSFHKYG-----EY-FPGTGDLRDIGAG 211 (367) T ss_dssp CHHHHHHHHHTTT-----CSCEEEEECSSSCCHHHHH----HTTTCSSEE-EEEEEECS-----SC-TTCCCCTTCCCCG T ss_pred CHHHHHHHHHHHC-----CCEEEEEECCCCCCCCHHH----HHHCCCCCE-EEECCCCC-----CC-CCCCCCHHHCCCC T ss_conf 5599999999862-----8869999588888844434----741598653-67535467-----77-9999987663888 No 51 >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima} Probab=54.77 E-value=5.5 Score=19.38 Aligned_cols=68 Identities=16% Similarity=0.057 Sum_probs=42.8 Q ss_pred EEEEECCC-HHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH Q ss_conf 99972027-688999999808988860998999917004788678-99999999837998999342653022204754 Q gi|254780659|r 4 LFLGDIVG-KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFS 79 (274) Q Consensus 4 LfiGDIvG-~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i 79 (274) |++=||-. ..++..-.+.+.++.++..+-+.+ |-|| +.+.+++++++|+|-+..|--.+.+++..+.+ T Consensus 47 i~i~did~~~~~~g~n~~lI~~I~~~~~iPl~v--------GGGIr~~ed~~~ll~~GadkVii~s~~~~~~~~~~~i 116 (266) T 2w6r_A 47 ILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA--------SGGAGKMEHFLEAFLAGADKALAASVFHFREIDMREL 116 (266) T ss_dssp EEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEE--------ESCCCSTHHHHHHHHHTCSEEECCCCC------CHHH T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHEECCEEEE--------CCCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHHHH T ss_conf 999996087557886677764345324854997--------6772120210033322000001133224551122667 No 52 >1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Probab=54.45 E-value=3.6 Score=20.57 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=3.6 Q ss_pred HHHHHHHHHH Q ss_conf 9999999863 Q gi|254780659|r 130 FRTADKILAT 139 (274) Q Consensus 130 F~~~d~~l~~ 139 (274) ++.+.+.+++ T Consensus 78 ~k~~~~~~~~ 87 (230) T 1fs0_G 78 FKKLLAEMKT 87 (230) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999766 No 53 >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Probab=52.90 E-value=12 Score=17.21 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=4.7 Q ss_pred CCCEEEECHH Q ss_conf 9989993426 Q gi|254780659|r 59 GIDVITTGNH 68 (274) Q Consensus 59 GvDviT~GNH 68 (274) .||.|-.|.. T Consensus 25 ~v~~ikvg~~ 34 (211) T 3f4w_A 25 DVDIIEVGTP 34 (211) T ss_dssp GCSEEEECHH T ss_pred CCCEEEECEE T ss_conf 8779994662 No 54 >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Probab=52.47 E-value=12 Score=17.27 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=5.9 Q ss_pred EEEEECCCCCCC Q ss_conf 799806976246 Q gi|254780659|r 173 SLVVGTHTHIPT 184 (274) Q Consensus 173 saVvGTHTHV~T 184 (274) ..+++|--..|- T Consensus 146 ~~i~~TRKt~Pg 157 (296) T 1qap_A 146 TQLLDTRKTLPG 157 (296) T ss_dssp CEEECCSCCCTT T ss_pred EEEEECCCCCCC T ss_conf 399835875632 No 55 >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} Probab=52.47 E-value=9.8 Score=17.73 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=22.4 Q ss_pred HHHHHHHCCCCEEEECHHHHCCCCHHHHHHH Q ss_conf 9999983799899934265302220475421 Q gi|254780659|r 51 IFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274) Q Consensus 51 ~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274) ...++++.|||.|-.=+.-++.+|+..+... T Consensus 34 ~i~~~~~~gv~~iqlR~K~~~~~e~~~l~~~ 64 (221) T 1yad_A 34 RIIITIQNEVDFIHIRERSKSAADILKLLDL 64 (221) T ss_dssp HHHHHHGGGCSEEEECCTTSCHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHH T ss_conf 9999997899899976899799999999999 No 56 >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, GMP reductase domain, structural genomics; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Probab=51.69 E-value=12 Score=17.08 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=7.4 Q ss_pred CHHHHHHHHHCCCCEEEE Q ss_conf 999999998379989993 Q gi|254780659|r 48 TEKIFCEMMETGIDVITT 65 (274) Q Consensus 48 t~~~~~~l~~~GvDviT~ 65 (274) |++.++.|.++|+|.|-- T Consensus 221 t~e~A~~l~~aGad~I~V 238 (393) T 2qr6_A 221 DYTTALHMMRTGAVGIIV 238 (393) T ss_dssp SHHHHHHHHTTTCSEEEE T ss_pred CHHHHHHHHHCCCCEEEE T ss_conf 999999999769987998 No 57 >1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Probab=51.01 E-value=13 Score=17.02 Aligned_cols=70 Identities=16% Similarity=0.307 Sum_probs=31.7 Q ss_pred CCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCCHHHCC------CCCHHH Q ss_conf 98899962---576228999999760895779980697624654564036728984056013712103------547467 Q gi|254780659|r 146 ADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSI------GLDKEE 216 (274) Q Consensus 146 ~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~~~SVI------G~~~~~ 216 (274) ..+.+||| |+.-|.| .+|-|-+|- .+-.|-| +.-..|.||++..++|......+.+ |+.-+. T Consensus 160 ~RV~ivD~DvHHGnGtq~----if~~d~~V~-~~SiH~~----~~~~~p~~tG~~~e~G~~~g~g~~~NipL~~g~~D~~ 230 (375) T 1c3p_A 160 KRILYIDLDAHHCDGVQE----AFYDTDQVF-VLSLHQS----PEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNE 230 (375) T ss_dssp CCEEEEECSSSCCHHHHH----HHTTCSSEE-EEEEEEC----TTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHH T ss_pred CEEEEEECCCCCCCHHHH----HHHCCCCEE-EEEECCC----CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHH T ss_conf 828999566778723668----762368879-9960458----8889988888810047877887357423898999689 Q ss_pred HHHHHHHC Q ss_conf 89888516 Q gi|254780659|r 217 PINRFITQ 224 (274) Q Consensus 217 ~i~rf~t~ 224 (274) -+.-|... T Consensus 231 y~~~~~~~ 238 (375) T 1c3p_A 231 FLFALEKS 238 (375) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 58 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Probab=50.09 E-value=13 Score=16.92 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=42.3 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274) |||+|+|- ..-|...++..+. ..|++..|+..-.+. +.......+.+...+.|+.+++..+- +..|..+.|. T Consensus 1 Mki~~~g~--~~~~~~~l~~L~~---~~~~i~~V~t~~d~~-~~~~~~~~v~~~a~~~~i~~~~~~~~--~~~~~~~~l~ 72 (660) T 1z7e_A 1 MKTVVFAY--HDMGCLGIEALLA---AGYEISAIFTHTDNP-GEKAFYGSVARLAAERGIPVYAPDNV--NHPLWVERIA 72 (660) T ss_dssp CEEEEEEC--HHHHHHHHHHHHH---TTCEEEEEECCCC---------CCHHHHHHHHTCCEECCSCT--TSHHHHHHHH T ss_pred CEEEEEEC--CHHHHHHHHHHHH---CCCCEEEEECCCCCC-CCCCCCCHHHHHHHHCCCCEECCCCC--CCHHHHHHHH T ss_conf 95999907--6899999999997---899789998389999-77678887999999879978846989--9899999998 Q ss_pred H-CCCEEEECCCC Q ss_conf 1-89389750079 Q gi|254780659|r 81 R-HCKFLRPANYP 92 (274) Q Consensus 81 ~-~~~ilRP~N~p 92 (274) + .+.++--+.|+ T Consensus 73 ~~~~D~~~~~~~~ 85 (660) T 1z7e_A 73 QLSPDVIFSFYYR 85 (660) T ss_dssp HHCCSEEEEESCC T ss_pred HCCCCEEEEEHHH T ss_conf 4598999983222 No 59 >3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3oe7_G* Probab=50.02 E-value=3.5 Score=20.60 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=7.9 Q ss_pred CCHHHHHHHHHHH Q ss_conf 5989999999863 Q gi|254780659|r 127 DDPFRTADKILAT 139 (274) Q Consensus 127 d~PF~~~d~~l~~ 139 (274) .+-|+.+.+.+++ T Consensus 89 sni~k~~~~~~~~ 101 (278) T 3oee_G 89 SQLAKAVRRHLND 101 (278) T ss_dssp HHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHC T ss_conf 9999999876420 No 60 >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Probab=49.49 E-value=11 Score=17.38 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHC-CCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH Q ss_conf 99999808988860-99899991700478867899999999837998999342653022204 Q gi|254780659|r 16 SIVYEMLPRLIRDF-QLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREAL 76 (274) Q Consensus 16 ~~v~~~Lp~l~~~~-~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~ 76 (274) ....+.|+.|++.- +.-| -++|.++.. -++++.+++.+.|- ..|||+|....+. T Consensus 18 ~~t~~il~~L~~~~v~aTF-Fv~G~~~~~---~~~~~~~~~~~~Gh---eIgnHt~~H~~~~ 72 (216) T 2c71_A 18 VLTARVLDKLDKYNVKATF-MVVGQRVND---STAAIIRRMVNSGH---EIGNHSWSYSGMA 72 (216) T ss_dssp HHHHHHHHHHHHHTCCCEE-EECGGGCSH---HHHHHHHHHHHTTC---EEEECCSSSSCCT T ss_pred CCHHHHHHHHHHCCCCEEE-EEECCCCCC---CHHHHHHHHHHCCC---EEECCCCCCCCHH T ss_conf 4099999999986981999-981623022---60999999998799---7853677667834 No 61 >2zru_A Isopentenyl-diphosphate delta-isomerase; type 2, IDI, FMN, isopentenyl diphosphate isomerase, cytoplasm, flavoprotein, isoprene biosynthesis; HET: FMN; 2.00A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* Probab=49.22 E-value=13 Score=16.84 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=7.9 Q ss_pred CHHHHHHHHHCCCCEEEECHHH Q ss_conf 9999999983799899934265 Q gi|254780659|r 48 TEKIFCEMMETGIDVITTGNHV 69 (274) Q Consensus 48 t~~~~~~l~~~GvDviT~GNH~ 69 (274) +++.+..+.++|+|.|...||- T Consensus 200 ~~e~a~~~~~~Gad~I~Vsn~g 221 (368) T 2zru_A 200 SMETAKLLYSYGIKNFDTSGQG 221 (368) T ss_dssp CHHHHHHHHHTTCCEEECCCBT T ss_pred CHHHHHHHHHHCCCEEEEEECC T ss_conf 3999999998189979998468 No 62 >3gr6_A Enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl reductase, NADP, triclosan, oxidoreductase; HET: NAP TCL; 2.28A {Staphylococcus aureus} PDB: 3gns_A* 3gnt_A Probab=48.49 E-value=7.7 Score=18.42 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=28.9 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH Q ss_conf 47886789999999983799899934265302220475421 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274) ++++.||...++++|.+.|.+|+..+..-=+.+++...++. T Consensus 18 aas~~GIG~aiA~~la~~G~~V~i~~r~~~~~~~~~~~~~~ 58 (260) T 3gr6_A 18 IANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQ 58 (260) T ss_dssp CCSTTCHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 99984799999999998799999996888889999999874 No 63 >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Probab=48.23 E-value=14 Score=16.74 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCC-HHHHHHHCCCEEEECCCCCCCC Q ss_conf 999808988860998999917004788678999999998379989993426530222-0475421893897500798887 Q gi|254780659|r 18 VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKRE-ALVFSQRHCKFLRPANYPPNTP 96 (274) Q Consensus 18 v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~ke-i~~~i~~~~~ilRP~N~p~~~P 96 (274) +-+.+.++|++.+.-+++----|.--.+|+ .+-++++.++|+|.+-.-+--++..+ ..+.+.+..--+-|+=-| .+| T Consensus 68 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~-~~f~~~~~~~Gv~g~iipDlp~ee~~~~~~~~~~~gl~~i~lvsp-tt~ 145 (248) T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGV-RNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAP-NTP 145 (248) T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCH-HHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECT-TCC T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCH-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECC-CCH T ss_conf 999999997346987899806650123579-999999986798578605788667666765652169515898578-881 Q ss_pred CCCE-EEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH--HHHHHHHHCCCEE Q ss_conf 5407-999848992899999600005883325989999999863413689988999625762289--9999976089577 Q gi|254780659|r 97 GNGS-GLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSE--KQCFAHFVDSRAS 173 (274) Q Consensus 97 G~G~-~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE--K~A~g~~lDGrVs 173 (274) -.-. .+.....| -+-.+..+|.+..+..+.. .+.+.+++++...+.+ ++|-|= =.|.| |+++.++-|| T Consensus 146 ~~ri~~i~~~s~g-fiY~vs~~GvTG~~~~~~~---~~~~~i~~iK~~t~~P-v~vGFG-I~t~e~v~~~~~~~ADG--- 216 (248) T 1geq_A 146 DERLKVIDDMTTG-FVYLVSLYGTTGAREEIPK---TAYDLLRRAKRICRNK-VAVGFG-VSKREHVVSLLKEGANG--- 216 (248) T ss_dssp HHHHHHHHHHCSS-EEEEECCC-------CCCH---HHHHHHHHHHHHCSSC-EEEESC-CCSHHHHHHHHHTTCSE--- T ss_pred HHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCH---HHHHHHHHHHCCCCCC-EEEEEC-CCCHHHHHHHHHCCCCE--- T ss_conf 9999877634897-1798414555787754320---2577888751046786-379824-69999999998748999--- Q ss_pred EEEECC Q ss_conf 998069 Q gi|254780659|r 174 LVVGTH 179 (274) Q Consensus 174 aVvGTH 179 (274) +|+||+ T Consensus 217 VIVGSa 222 (248) T 1geq_A 217 VVVGSA 222 (248) T ss_dssp EEECHH T ss_pred EEECHH T ss_conf 998889 No 64 >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Probab=47.95 E-value=8.8 Score=18.02 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=32.1 Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH Q ss_conf 9980898886099899991700478867899999999837998999342653022204 Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREAL 76 (274) Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~ 76 (274) .+.|+.|++..-.=-.-++|+++.. .+...+++.+.|- +.|||+|..+.+. T Consensus 71 ~~iLd~Lk~~~vkATFFv~g~~i~~----~p~~~~~~~~~Gh---eIgnHt~~H~~l~ 121 (247) T 2j13_A 71 GKILDVLKEKKVPATFFVTGHYIKT----QKDLLLRMKDEGH---IIGNHSWSHPDFT 121 (247) T ss_dssp HHHHHHHHHHTCCEEEEECHHHHHH----CHHHHHHHHHTTC---EEEECCSSCCCGG T ss_pred HHHHHHHHHCCCCEEEEEECHHHHH----CHHHHHHHHHCCC---EEEECCCCCCCCC T ss_conf 9999999986983999986624566----9999999985798---8972214578743 No 65 >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Probab=47.66 E-value=14 Score=16.68 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 6889999998089888 Q gi|254780659|r 12 KTGRSIVYEMLPRLIR 27 (274) Q Consensus 12 ~~Gr~~v~~~Lp~l~~ 27 (274) +..+.++++.||.-.+ T Consensus 32 ~~~~~~l~~~l~~~i~ 47 (320) T 3paj_A 32 QDRLAYLKQQLPADIT 47 (320) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 7668999988189999 No 66 >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Probab=47.61 E-value=13 Score=16.86 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHCCCCEE-EECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHH Q ss_conf 99980898886099899-9917004788678999999998379989993426530222047 Q gi|254780659|r 18 VYEMLPRLIRDFQLDFV-IANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALV 77 (274) Q Consensus 18 v~~~Lp~l~~~~~~Dfv-IaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~ 77 (274) ..+.|+.|++ |++-.+ -++|++... .++.++++.+.|. ..|||+|+.+.+.. T Consensus 19 ~~~il~~L~~-~~i~aTFFv~g~~~~~----~p~~~~~~~~~Gh---eIg~Hs~~H~~~~~ 71 (195) T 2cc0_A 19 TQSLLNALRQ-NGLRATMFNQGQYAAQ----NPSLVRAQVDAGM---WVANHSYTHPHMTQ 71 (195) T ss_dssp HHHHHHHHHH-TTCCCEEEECHHHHHH----CHHHHHHHHHTTC---EEEECCSSCCCGGG T ss_pred HHHHHHHHHH-CCCCEEEEEECHHHHH----CHHHHHHHHHCCC---EEECCCCCCCCHHH T ss_conf 9999999998-7981899997833566----9999999997698---84200034715766 No 67 >2ck3_G ATP synthase gamma chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Probab=46.54 E-value=4 Score=20.29 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=9.6 Q ss_pred ECCCCCCCHHHCCCCCHH Q ss_conf 405601371210354746 Q gi|254780659|r 198 TDLGMCGDYNSSIGLDKE 215 (274) Q Consensus 198 TDvGMtG~~~SVIG~~~~ 215 (274) +|-|+||+||+-|-...+ T Consensus 73 SDrGLCG~fN~~iik~~~ 90 (272) T 2ck3_G 73 SDRGLCGAIHSSVAKQMK 90 (272) T ss_dssp CSCCCSSSSHHHHC---- T ss_pred CCCCCCCCCCHHHHHHHH T ss_conf 698764234778999999 No 68 >2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Probab=46.13 E-value=4.3 Score=20.03 Aligned_cols=16 Identities=31% Similarity=0.686 Sum_probs=9.7 Q ss_pred EEEE---ECCCCCCCHHHC Q ss_conf 2898---405601371210 Q gi|254780659|r 194 TGYI---TDLGMCGDYNSS 209 (274) Q Consensus 194 Tayi---TDvGMtG~~~SV 209 (274) ++|| ||-|+||+|+|- T Consensus 105 ~l~IvitSDrGLCG~fNsn 123 (311) T 2xok_G 105 ELIVAITSDKGLCGSIHSQ 123 (311) T ss_dssp EEEEEECCSCCSSTTHHHH T ss_pred EEEEEEECCCCCHHHHHHH T ss_conf 5999996897426789999 No 69 >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.30A {Pseudomonas syringae PV} Probab=45.64 E-value=11 Score=17.34 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=9.4 Q ss_pred HHHHCCCCEEEECHHHHCCCCHHHHHH Q ss_conf 998379989993426530222047542 Q gi|254780659|r 54 EMMETGIDVITTGNHVWDKREALVFSQ 80 (274) Q Consensus 54 ~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274) ++.+.|+||+-+==.+..++|...+++ T Consensus 29 ~l~~~G~DVViG~vEtHgR~eT~al~~ 55 (228) T 2r8r_A 29 AQLRQGVRVMAGVVETHGRAETEALLN 55 (228) T ss_dssp HHHHTTCCEEEEECCCTTCHHHHHHHT T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHC T ss_conf 999789967999952799889999976 No 70 >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Probab=45.24 E-value=16 Score=16.44 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=43.3 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHH Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530222047542 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQ 80 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~ 80 (274) |||+|+|- +.-|...++..+. ..|.+-.|+.+-.. .++.+......+...+.|+.+++..+ .+..++.+.+. T Consensus 1 Mkiv~~~~--~~~~~~~l~~L~~---~~~~i~~V~t~~~~-~~~~~~~~~v~~~a~~~~ip~~~~~~--~~~~~~~~~l~ 72 (305) T 2bln_A 1 MKTVVFAY--HDMGCLGIEALLA---AGYEISAIFTHTDN-PGEKAFYGSVARLAAERGIPVYAPDN--VNHPLWVERIA 72 (305) T ss_dssp CEEEEEEC--HHHHHHHHHHHHH---TTCEEEEEECCCC-------CCCCHHHHHHHHTCCEECCSC--CCSHHHHHHHH T ss_pred CEEEEECC--CHHHHHHHHHHHH---CCCCEEEEEECCCC-CCCCCCCCHHHHHHHHCCCCEECCCC--CCCHHHHHHHH T ss_conf 95999927--7899999999997---89988999908999-98878989899999986998984598--99899999998 Q ss_pred H-CCCEEEECCCCC Q ss_conf 1-893897500798 Q gi|254780659|r 81 R-HCKFLRPANYPP 93 (274) Q Consensus 81 ~-~~~ilRP~N~p~ 93 (274) + .+.++=-++|+. T Consensus 73 ~~~~dl~i~~~~~~ 86 (305) T 2bln_A 73 QLSPDVIFSFYYRH 86 (305) T ss_dssp HTCCSEEEEESCCS T ss_pred HCCCCEEEEEHHHH T ss_conf 32999999863212 No 71 >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Probab=45.06 E-value=16 Score=16.43 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=29.8 Q ss_pred HHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH Q ss_conf 9888609989999170047886789999999983799899934265302220475421 Q gi|254780659|r 24 RLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274) Q Consensus 24 ~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274) .+|++.++ ++|.+-+... --+..++.++.||++|-.=.--++..|.+++..+ T Consensus 10 ~~~~~l~L-y~ITd~~~~~-----~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~a~~ 61 (215) T 1xi3_A 10 NLRNKLKL-YVITDRRLKP-----EVESVREALEGGATAIQMRIKNAPTREMYEIGKT 61 (215) T ss_dssp CHHHHTSE-EEECCTTTSC-----HHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHH T ss_pred CHHHCCEE-EEEECCCCCC-----HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH T ss_conf 73358769-9992886388-----8999999998799999987799899999999999 No 72 >1ulu_A Enoyl-acyl carrier protein reductase; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.2.1.2 PDB: 2yw9_A* Probab=45.03 E-value=12 Score=17.15 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=32.0 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC-CEEEECCCC Q ss_conf 4788678999999998379989993426530222047542189-389750079 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC-KFLRPANYP 92 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~-~ilRP~N~p 92 (274) +++++||...++++|.+.|.+|+-.+...=..++......... ...-+++.. T Consensus 16 asg~~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 68 (261) T 1ulu_A 16 VTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVT 68 (261) T ss_dssp CCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTT T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 99986499999999998799999981746679999997620487245414669 No 73 >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Probab=42.41 E-value=10 Score=17.60 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=9.5 Q ss_pred HCCCEEEEEECCCCCCCC Q ss_conf 089577998069762465 Q gi|254780659|r 168 VDSRASLVVGTHTHIPTA 185 (274) Q Consensus 168 lDGrVsaVvGTHTHV~Ta 185 (274) +.+.-..+++|.-..|-. T Consensus 127 ~~~~~~~i~~TRKt~Pg~ 144 (284) T 1qpo_A 127 VRGTKAKIRDTRKTLPGL 144 (284) T ss_dssp TTTSSCEEECCSCCCTTC T ss_pred CCCCCCEEEECCCCCCCH T ss_conf 157885698346666465 No 74 >2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Probab=42.03 E-value=4.1 Score=20.20 Aligned_cols=15 Identities=40% Similarity=0.802 Sum_probs=7.4 Q ss_pred EEECCCCCCCHHHCC Q ss_conf 984056013712103 Q gi|254780659|r 196 YITDLGMCGDYNSSI 210 (274) Q Consensus 196 yiTDvGMtG~~~SVI 210 (274) +-||-|+||+|||-| T Consensus 81 itSDrGLCG~fNs~i 95 (286) T 2qe7_G 81 ITSDRGLAGPYNANI 95 (286) T ss_dssp CCCTTCCCTHHHHHH T ss_pred EECCCCCCCHHHHHH T ss_conf 967987764100779 No 75 >1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 Probab=41.90 E-value=15 Score=16.56 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=32.5 Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHH Q ss_conf 99808988860998999917004788678999999998379989993426530222047 Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALV 77 (274) Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~ 77 (274) ...|+.|++..-.=-.-++|.++. -.++..+++.+.|. ..|||+|.+..... T Consensus 59 ~~iL~~L~~~~i~aTfFv~g~~~~----~~~~~~~~~~~~Gh---eIgnHt~~H~~~~~ 110 (240) T 1ny1_A 59 PKVLDVLKKHRVTGTFFVTGHFVK----DQPQLIKRMSDEGH---IIGNHSFHHPDLTT 110 (240) T ss_dssp HHHHHHHHHTTCCCEEEECHHHHH----HCHHHHHHHHHTTC---EEEECCSSCCCGGG T ss_pred HHHHHHHHHCCCCEEEEEHHHHHH----HCHHHHHHHHHCCC---EEEECCCCCCCCCC T ss_conf 999999998599889983234455----59899999985898---89843555687010 No 76 >3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str} Probab=41.56 E-value=14 Score=16.83 Aligned_cols=31 Identities=32% Similarity=0.595 Sum_probs=21.6 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECH-HHHC Q ss_conf 478867899999999837998999342-6530 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGN-HVWD 71 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GN-H~wd 71 (274) -|||+=-+++...+.+++|++.+|+.| ..|+ T Consensus 154 IAGGLI~~kedV~~aL~aGA~aVSTS~~~LW~ 185 (192) T 3kts_A 154 IAGGLIETSEQVNQVIASGAIAVTTSNKHLWE 185 (192) T ss_dssp EEESSCCSHHHHHHHHTTTEEEEEECCGGGGT T ss_pred EEECCCCCHHHHHHHHHCCCEEEECCCHHHHC T ss_conf 97667288999999998599799879978972 No 77 >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Probab=40.16 E-value=19 Score=15.94 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=11.7 Q ss_pred CEEEEEEECCCHHHHHHHHHHHH Q ss_conf 92699972027688999999808 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLP 23 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp 23 (274) |||.||| +|..|..++.+.|. T Consensus 13 mkih~iG--igg~Gms~lA~~l~ 33 (469) T 1j6u_A 13 MKIHFVG--IGGIGMSAVALHEF 33 (469) T ss_dssp CEEEEET--TTSHHHHHHHHHHH T ss_pred CEEEEEE--ECHHHHHHHHHHHH T ss_conf 7799998--86999999999999 No 78 >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Probab=40.09 E-value=16 Score=16.30 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=7.7 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 46789888516886 Q gi|254780659|r 214 KEEPINRFITQIPR 227 (274) Q Consensus 214 ~~~~i~rf~t~~p~ 227 (274) .+..++++....|. T Consensus 182 ~~~a~~~~k~~~~~ 195 (286) T 1x1o_A 182 VGEAVRRAKARAPH 195 (286) T ss_dssp HHHHHHHHHHHSCT T ss_pred HHHHHHHHHHHHCC T ss_conf 88899999987257 No 79 >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} Probab=39.40 E-value=4.6 Score=19.88 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=22.9 Q ss_pred HHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH Q ss_conf 999999983799899934265302220475421 Q gi|254780659|r 49 EKIFCEMMETGIDVITTGNHVWDKREALVFSQR 81 (274) Q Consensus 49 ~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~ 81 (274) .+..+++++.|++++-.-.--|+..|...++.+ T Consensus 16 ~~~l~~~l~~Gv~~lqlR~k~~s~~e~~~ll~~ 48 (210) T 3ceu_A 16 DKIITALFEEGLDILHLRKPETPAMYSERLLTL 48 (210) T ss_dssp HHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH T ss_conf 999999998799889983799999999999999 No 80 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=39.22 E-value=19 Score=15.85 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=13.9 Q ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 999917004788678999999998379989993426 Q gi|254780659|r 33 FVIANGENSAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 33 fvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) .+++--|+-.|-.| ..-++..|...|-+|+-+|.. T Consensus 6 Vvi~~~~~D~H~lG-~~~va~~l~~~G~~V~~LG~~ 40 (137) T 1ccw_A 6 IVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVL 40 (137) T ss_dssp EEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEE T ss_pred EEEEECCCCHHHHH-HHHHHHHHHHCCCEEEECCCC T ss_conf 99994698745899-999999999879879977866 No 81 >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolidine carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis H37RV} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 2aqh_A* 2aqk_A* ... Probab=39.03 E-value=15 Score=16.50 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=26.9 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH Q ss_conf 478867899999999837998999342653022204754 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFS 79 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i 79 (274) +|++.||...+++.|.+.|++|+-++. ++.+..+-+ T Consensus 15 aag~~GIG~aiA~~la~~Ga~Vvi~~~---~~~~l~~~~ 50 (269) T 2h7i_A 15 IITDSSIAFHIARVAQEQGAQLVLTGF---DRLRLIQRI 50 (269) T ss_dssp CSSTTSHHHHHHHHHHHTTCEEEEEEC---SCHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHH T ss_conf 999977999999999986999999968---837899999 No 82 >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 1g6c_A* 1g4e_A* 1g69_A* 1g4s_A* 1g4p_A* 1g67_A* Probab=39.01 E-value=14 Score=16.82 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=26.6 Q ss_pred HHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHC Q ss_conf 88860998999917004788678999999998379989993426530 Q gi|254780659|r 25 LIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD 71 (274) Q Consensus 25 l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd 71 (274) +|+..++ +.|..-++..+ -.-+..++.++.|++++-.=+--+| T Consensus 14 ~~~~~~~-Y~I~~~~~~~~---~~~~~v~~al~~Gv~~vqlR~K~~~ 56 (227) T 2tps_A 14 MKELLSV-YFIMGSNNTKA---DPVTVVQKALKGGATLYQFREKGGD 56 (227) T ss_dssp HHHHTTE-EEEECGGGCSS---CHHHHHHHHHHHTCSEEEECCCSTT T ss_pred HHHHCCE-EEEECCCCCCC---CHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 9864889-99989532356---8899999999889989998679988 No 83 >1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A Probab=38.68 E-value=20 Score=15.80 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=38.6 Q ss_pred HHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECC-----------CC-CHHHHHHHHHH-HCCCEEEEE Q ss_conf 005883325989999999863413689988999625-----------76-22899999976-089577998 Q gi|254780659|r 119 RVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFH-----------AE-TTSEKQCFAHF-VDSRASLVV 176 (274) Q Consensus 119 r~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfH-----------aE-aTSEK~A~g~~-lDGrVsaVv 176 (274) +.-|. ..-+||..++++++.++ ..-.++++|.. || +|.|+.+|-.- -.|-+-..+ T Consensus 3 ~~~~~-~~~~~~~~i~~ai~al~--~G~~Viv~Dd~dRE~EgDlv~aAe~iT~e~i~fm~~~~~GliC~a~ 70 (217) T 1g57_A 3 QTLLS-SFGTPFERVENALAALR--EGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCI 70 (217) T ss_dssp --CGG-GGCCHHHHHHHHHHHHH--TTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEE T ss_pred HHHHH-HCCCCCCHHHHHHHHHH--CCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECC T ss_conf 34453-51896005999999998--7997999868998875178978575999999999994898889727 No 84 >2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Probab=38.41 E-value=5.4 Score=19.43 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=54.4 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHC------CCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCH Q ss_conf 2699972027688999999808988860------9989999170047886789999999983799899934265302220 Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDF------QLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREA 75 (274) Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~------~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei 75 (274) .|.|-| +-..-|..+++.+..+--++ +...+|+.-.+.. -++...+.|+-|+ +-+.+||--+. T Consensus 17 ~i~~sG--~~~~~~~~l~~~i~~~GG~~~~~~~~~~THlI~~~~~~~--------k~~~a~~~~i~VV-~~~Wl~ds~~~ 85 (109) T 2cou_A 17 ILSFLG--FSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVK--------DLPFEPSKKLFVV-KQEWFWGSIQM 85 (109) T ss_dssp BEEEES--SCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCS--------SCSSCCCTTSEEE-CHHHHHHHHHT T ss_pred EEEECC--CCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCH--------HHHHHHHCCCCCC-CHHHHHHHHHC T ss_conf 899858--986889999999998399997642898518997369847--------8898886378666-79999999983 Q ss_pred HHHHHHCCCEEEECCCCCCCCCCC Q ss_conf 475421893897500798887540 Q gi|254780659|r 76 LVFSQRHCKFLRPANYPPNTPGNG 99 (274) Q Consensus 76 ~~~i~~~~~ilRP~N~p~~~PG~G 99 (274) -..+++.++++++.+-|+..|..| T Consensus 86 ~~~l~e~~Y~~~~~~~~~~~p~sg 109 (109) T 2cou_A 86 DARAGETMYLYEKANTPESGPSSG 109 (109) T ss_dssp TSCCCGGGTBCCCCCCSCSSCCCC T ss_pred CCCCCHHHEECCCCCCCCCCCCCC T ss_conf 984880524048999898899998 No 85 >1o13_A Probable NIFB protein; structural genomics, TM1816, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A Probab=38.40 E-value=20 Score=15.77 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=5.4 Q ss_pred HHHHHHHHHHCC Q ss_conf 467898885168 Q gi|254780659|r 214 KEEPINRFITQI 225 (274) Q Consensus 214 ~~~~i~rf~t~~ 225 (274) .+.+|+.|+.+. T Consensus 108 v~eal~~~~~g~ 119 (136) T 1o13_A 108 VEEVVNQYLSGQ 119 (136) T ss_dssp HHHHHHHHHTTC T ss_pred HHHHHHHHHHCC T ss_conf 999999999787 No 86 >1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Probab=37.55 E-value=20 Score=15.68 Aligned_cols=47 Identities=30% Similarity=0.412 Sum_probs=33.2 Q ss_pred CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHH Q ss_conf 926999-72027688999999808988860998999917004788678999 Q gi|254780659|r 1 MRLLFL-GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEK 50 (274) Q Consensus 1 MkiLfi-GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~ 50 (274) ||||.- -|=+-.||.+++.+.|. +.+++-.|-=..|.|+-|..||-. T Consensus 1 M~ILlTNDDGi~s~Gi~~L~~~l~---~~~~V~vvAP~~~~S~~g~sit~~ 48 (247) T 1j9j_A 1 MRILVTNDDGIQSKGIIVLAELLS---EEHEVFVVAPDKERSATGHSITIH 48 (247) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHT---TTSEEEEEEESSCCTTCTTCCCCS T ss_pred CEEEEECCCCCCCHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCCCCCC T ss_conf 959997279989767999999986---699199994499876662444469 No 87 >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=37.17 E-value=21 Score=15.64 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=49.2 Q ss_pred HHHHHHHCCCCEEEECCEE-CC--------CCCCCCHHHHH---------H-HHHCCCCEEEECHHHH-CCCCHHHHHHH Q ss_conf 0898886099899991700-47--------88678999999---------9-9837998999342653-02220475421 Q gi|254780659|r 22 LPRLIRDFQLDFVIANGEN-SA--------GGFGITEKIFC---------E-MMETGIDVITTGNHVW-DKREALVFSQR 81 (274) Q Consensus 22 Lp~l~~~~~~DfvIaNgEN-aa--------~G~Git~~~~~---------~-l~~~GvDviT~GNH~w-d~kei~~~i~~ 81 (274) +..+..++++|+||+--|. .+ .=||.+++.++ + +.++||- |.--.++ +..|...|+++ T Consensus 62 ~~~~~~~~~~dlvvvgpE~pL~~gl~d~~~~vfGPs~~aA~LE~SK~faK~~m~~~~IP--ta~~~~f~~~~ea~~~~~~ 139 (412) T 1vkz_A 62 EKTLKAIPEEDIVIPGSEEFLVEGVSNWRSNVFGPVKEVARLEGSKVYAKRFMKKYGIR--TARFEVAETPEELREKIKK 139 (412) T ss_dssp HHHHHTSCSSCEECCSSGGGTCC-----CTTBSSCCHHHHHHHHCHHHHHHHHHHTTCC--CCCEEEESSHHHHHHHHTT T ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHH T ss_conf 78776404799899897899997788758874497989999887599999999970889--8851102679999999871 Q ss_pred C--CCEEEECCCCCCCCCCCEEEE Q ss_conf 8--938975007988875407999 Q gi|254780659|r 82 H--CKFLRPANYPPNTPGNGSGLY 103 (274) Q Consensus 82 ~--~~ilRP~N~p~~~PG~G~~i~ 103 (274) . |-+|+|.-. +.|+|..+. T Consensus 140 ~~~PvVIKadgl---a~GKGV~i~ 160 (412) T 1vkz_A 140 FSPPYVIKADGL---ARGKGVLIL 160 (412) T ss_dssp SCSSEEEEESSC---CSSCCEEEE T ss_pred CCCCEEEEECCC---CCCCCEEEE T ss_conf 799789970866---788864898 No 88 >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} Probab=36.67 E-value=16 Score=16.35 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=23.9 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 4788678999999998379989993426 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) +++++||...+++.|.+.|.+|+-.+.. T Consensus 39 ass~~GIG~aiA~~la~~Ga~Vvi~~r~ 66 (293) T 3grk_A 39 VANNRSIAWGIAKAAREAGAELAFTYQG 66 (293) T ss_dssp CCSSSSHHHHHHHHHHHTTCEEEEEECS T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9999559999999999869999998387 No 89 >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 2jjy_A* Probab=36.00 E-value=13 Score=16.95 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=22.2 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 47886789999999983799899934 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~G 66 (274) +|++.||.+.+|+.|.+.|.+|+-.. T Consensus 34 ~a~s~GIG~aiA~~la~~Ga~Vii~~ 59 (280) T 3nrc_A 34 LLSNKSIAYGIAKAMHREGAELAFTY 59 (280) T ss_dssp CCSTTCHHHHHHHHHHHTTCEEEEEE T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 98873899999999998699999996 No 90 >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Probab=35.90 E-value=13 Score=17.04 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=22.4 Q ss_pred HCCCEEEEEECCCCCCCCHHHHCC------CCEEEEECCCCCCCHHHCCCCC--------HHHHHHHHHHCCCC Q ss_conf 089577998069762465456403------6728984056013712103547--------46789888516886 Q gi|254780659|r 168 VDSRASLVVGTHTHIPTADAQILD------GGTGYITDLGMCGDYNSSIGLD--------KEEPINRFITQIPR 227 (274) Q Consensus 168 lDGrVsaVvGTHTHV~TaD~rILp------~GTayiTDvGMtG~~~SVIG~~--------~~~~i~rf~t~~p~ 227 (274) +.|.=..+++|--..|-. |.|. || -+-=..|.+|+|+-.+ .+..++++....|. T Consensus 140 ~~~~~~~i~~TRKT~PGl--R~l~k~Av~~GG----g~~HR~~L~d~iLikdNHi~~~g~~~~ai~~~~~~~~~ 207 (300) T 3l0g_A 140 VSGTKVKIRSTRKTTPGL--RMLDKYSVCIGG----GESYRDNLCDGVLIKDNHIASCGSITLAIQRLRKNLKN 207 (300) T ss_dssp TTTSSCEEECCSCCCTTC--HHHHHHHHHHTT----CBCSCSSTTSCEEECHHHHHHHSCHHHHHHHHHHHSSS T ss_pred HCCCCCEEECCCCCCCCH--HHHHHHHHHHCC----CCCCCCCCCHHHEECCCHHHHCCCHHHHHHHHHHHCCC T ss_conf 469984660277347427--999999999669----87514764344403543354305289999999974898 No 91 >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Probab=35.38 E-value=22 Score=15.46 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHCCCCEE--EECCEECCCCCCCCHHHHHHHHHCCCCEEEEC----HHHHCCC Q ss_conf 99980898886099899--99170047886789999999983799899934----2653022 Q gi|254780659|r 18 VYEMLPRLIRDFQLDFV--IANGENSAGGFGITEKIFCEMMETGIDVITTG----NHVWDKR 73 (274) Q Consensus 18 v~~~Lp~l~~~~~~Dfv--IaNgENaa~G~Git~~~~~~l~~~GvDviT~G----NH~wd~k 73 (274) +++.+.++|++.+.-|| +.-|. -..--+.+..+.|.+.|||+|-.| |-..|-+ T Consensus 4 i~~~f~~~k~~~~~ali~y~taG~---P~~~~~~~~l~~l~~~GaD~iEiGiPfSDP~aDGp 62 (268) T 1qop_A 4 YENLFAQLNDRREGAFVPFVTLGD---PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGP 62 (268) T ss_dssp HHHHHHHHHHTTCCEEEEEEETTS---SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCH T ss_pred HHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH T ss_conf 899999998749936898881707---98799999999999779999997898888654479 No 92 >3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, acetylation, arginase fold, HDAC8, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* Probab=35.03 E-value=22 Score=15.43 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=29.5 Q ss_pred CCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC Q ss_conf 98899962---5762289999997608957799806976246545640367289840560137 Q gi|254780659|r 146 ADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGD 205 (274) Q Consensus 146 ~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGMtG~ 205 (274) ..+.+||| |+.-|.| .+|-|.||-- +-.|-+ +....| ||....|+|.-.. T Consensus 170 ~RV~iiD~DvHHGdGtq~----iF~~d~~V~~-iSiH~~----~~~~fP-gtg~~~e~G~g~g 222 (388) T 3ew8_A 170 ERILYVDLDLHHGDGVED----AFSFTSKVMT-VSLHKF----SPGFFP-GTGDVSDVGLGKG 222 (388) T ss_dssp SCEEEEECSSSCCHHHHH----HTTTCSSEEE-EEEEEC----CTTCTT-CCCCTTCCCCGGG T ss_pred CEEEEEECCCCCCCCCEE----EEECCCCEEE-EECCCC----CCCCCC-CCCCHHHCCCCCC T ss_conf 728998568878865032----5752587268-840456----788789-9997522488766 No 93 >2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} Probab=34.88 E-value=22 Score=15.41 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=7.5 Q ss_pred CCHHHHHHHHHCCCCEEE Q ss_conf 899999999837998999 Q gi|254780659|r 47 ITEKIFCEMMETGIDVIT 64 (274) Q Consensus 47 it~~~~~~l~~~GvDviT 64 (274) |.++..+.|.++||.++. T Consensus 72 iG~~a~~~l~~~GI~v~~ 89 (121) T 2yx6_A 72 IGRRAIEYFNSLGISVVT 89 (121) T ss_dssp CCHHHHHHHHHTTCEEEC T ss_pred CCHHHHHHHHHCCCEEEE T ss_conf 798899999987999998 No 94 >2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.46A {Bacteroides thetaiotaomicron vpi-5482} Probab=34.62 E-value=14 Score=16.70 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=37.6 Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEE Q ss_conf 99808988860998999917004788678999999998379989993426530222047542189389 Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFL 86 (274) Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~il 86 (274) .+.+.+|+++ ...+.=++|++..+|++++ +...|+.++..| | ++..|+++--++| T Consensus 61 ~~~i~~L~~~---GV~~~AC~n~a~~~gi~~~----~~~~gi~vv~~G-~-----~l~~~~~~Gy~vi 115 (117) T 2fb6_A 61 QTEILEMLQS---GITIEACQDCCENFGVASI----ITNLGITVRYMG-I-----PLTEYLKNGEKIL 115 (117) T ss_dssp HHHHHHHHHH---TCEEEEEHHHHHHHTCHHH----HHHTTCEEECCH-H-----HHHHHHHTTCEEE T ss_pred HHHHHHHHHC---CCCHHHHHHHHHHCCCCHH----HHHCCCEEEECC-H-----HHHHHHHCCCEEE T ss_conf 9999999987---9905998999998599888----985699798885-9-----8999998898686 No 95 >3men_A Acetylpolyamine aminohydrolase; seattle structural genomics center for infectious disease (ssgcid), histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Probab=34.60 E-value=23 Score=15.38 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=30.0 Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCC Q ss_conf 598999999986341368998899962---576228999999760895779980697624654564036728984056 Q gi|254780659|r 127 DDPFRTADKILATCPLKEQADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLG 201 (274) Q Consensus 127 d~PF~~~d~~l~~~~~~~~~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvG 201 (274) +|-=-++..+.+. .-.+.+||| |+.-|.|- +|-|.+|-.+ --|.+ +....|+-+.+..++| T Consensus 191 NnvAiaa~~~~~~-----~~rVaIiD~DvHhGnGTq~i----f~~d~~V~~~-SiH~~----~~~~~p~~~g~~~e~g 254 (362) T 3men_A 191 NNAAIAAQALRAR-----HARVAVLDTDMHHGQGIQEI----FYARRDVLYV-SIHGD----PTNFYPAVAGFDDERG 254 (362) T ss_dssp CHHHHHHHHHTTT-----CSCEEEEECSSSCCHHHHHH----TTTCSSEEEE-EEEEC----CTTSTTCSSCCTTCCC T ss_pred HHHHHHHHHHHHH-----CCEEEEEECCCCCCCCHHHH----HCCCCCEEEE-ECCCC----CCCCCCCCCCCHHHCC T ss_conf 4999999999970-----79289983478898521201----0215614775-10136----7767899899612137 No 96 >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Probab=33.92 E-value=23 Score=15.31 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=22.6 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 4788678999999998379989993426 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) .|.|..-+.+..+.+...|+..++.|-= T Consensus 60 lAsG~~~~~~~~~~~~~~G~G~vv~kti 87 (336) T 1f76_A 60 LAAGLDKDGECIDALGAMGFGSIEIGTV 87 (336) T ss_dssp ECTTSSTTCCCHHHHHHTTCSEEEEEEE T ss_pred ECCCCCCCHHHHHHHHHCCCCEEEECCC T ss_conf 6877777668999998648456660365 No 97 >1zgg_A Putative low molecular weight protein-tyrosine- phosphatase YWLE; alpha/beta, four-stranded parallel beta sheet, structural genomics; NMR {Bacillus subtilis} Probab=33.73 E-value=23 Score=15.29 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=47.5 Q ss_pred CEEEEE--EECCCHHHHHHHHHHHHHHHHHCCCCEEEECCE-ECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHH Q ss_conf 926999--720276889999998089888609989999170-04788678999999998379989993426530222047 Q gi|254780659|r 1 MRLLFL--GDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGE-NSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALV 77 (274) Q Consensus 1 MkiLfi--GDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgE-Naa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~ 77 (274) |||||+ |.+.=+|=-+++-++ +-++..+++.+.-+- -+..|....+...+-|.+.|+|. +|. .++-.-+ T Consensus 1 M~ILfVC~gN~cRSpmAE~i~~~---~~~~~g~~~~v~SAG~~~~~~~~~~p~a~~~l~~~gi~~----~h~-~~~l~~~ 72 (150) T 1zgg_A 1 MDIIFVCTGNTCRSPMAEALFKS---IAEREGLNVNVRSAGVFASPNGKATPHAVEALFEKHIAL----NHV-SSPLTEE 72 (150) T ss_dssp CEEEEECTTSTTTHHHHHHHHHH---HHHHHTCCCEEEEEBTTCCTTCBCCTTHHHHHHHTTSCC----CCB-CCBCCHH T ss_pred CEEEEECCCCHHHHHHHHHHHHH---HHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCC----CCC-CCCCHHH T ss_conf 96999879954899999999999---999769972787544202478878879999999709872----234-3212186 Q ss_pred HHHHCCCEE Q ss_conf 542189389 Q gi|254780659|r 78 FSQRHCKFL 86 (274) Q Consensus 78 ~i~~~~~il 86 (274) .++..+.|| T Consensus 73 ~~~~~DlIl 81 (150) T 1zgg_A 73 LMESADLVL 81 (150) T ss_dssp HHHHCSEEE T ss_pred HHHCCCEEH T ss_conf 611058805 No 98 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Probab=33.72 E-value=22 Score=15.41 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=38.6 Q ss_pred HHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEEC Q ss_conf 9808988860998999917004788678999999998379989993426530222047542189389750 Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPA 89 (274) Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~ 89 (274) +.+..|++++.++++|- -|-=++++.++...++|+|.+-+=+ ++ +++.++..+..-..-|- T Consensus 50 ~~I~~l~~~~~~~~~vG------aGTV~~~~~~~~a~~aGa~fivsP~--~~-~~v~~~~~~~~~~~iPG 110 (205) T 1wa3_A 50 TVIKELSFLKEKGAIIG------AGTVTSVEQCRKAVESGAEFIVSPH--LD-EEISQFCKEKGVFYMPG 110 (205) T ss_dssp HHHHHTHHHHHTTCEEE------EESCCSHHHHHHHHHHTCSEEECSS--CC-HHHHHHHHHHTCEEECE T ss_pred HHHHHHHHHCCCCEEEE------EECCCCHHHHHHHHHCCCCEEECCC--CC-HHHHHHHHHCCCCCCCC T ss_conf 99999997318982896------3000127889999864874886799--99-99999999839982277 No 99 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=33.42 E-value=23 Score=15.30 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=39.9 Q ss_pred HHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEE--------------------------ECHHHH-CC Q ss_conf 980898886099899991700478867899999999837998999--------------------------342653-02 Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVIT--------------------------TGNHVW-DK 72 (274) Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT--------------------------~GNH~w-d~ 72 (274) +.|-++-++.+||+||+--|..- ..-+++.|.+.|+.|+- .=-.++ +. T Consensus 78 ~~i~~~~~~~~iDlvivGpE~pL-----~~Gl~D~l~~~gi~vfGps~~aa~lE~sK~f~k~~m~~~~Ipta~~~~~~~~ 152 (452) T 2qk4_A 78 TALAQFCKEKKIEFVVVGPEAPL-----AAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKP 152 (452) T ss_dssp HHHHHHHHHHTCCEEEECSSHHH-----HTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSH T ss_pred HHHHHHHHHHCCCEEEECCCHHH-----HHHHHHHHHHCCCCEECCHHHHHHHHHCHHHHHHHHHHCCCCCCHHEEEECH T ss_conf 99999999859999998973898-----9889999986799443550888887747999999998517999702399468 Q ss_pred CCHHHHHHHCC---CEEEECCCCCCCCCCCEEE Q ss_conf 22047542189---3897500798887540799 Q gi|254780659|r 73 REALVFSQRHC---KFLRPANYPPNTPGNGSGL 102 (274) Q Consensus 73 kei~~~i~~~~---~ilRP~N~p~~~PG~G~~i 102 (274) .|..+++++.. -++||.=. +.|+|..+ T Consensus 153 ~ea~~~i~~~~~P~vVIK~dgl---a~GKGV~v 182 (452) T 2qk4_A 153 EEACSFILSADFPALVVKASGL---AAGKGVIV 182 (452) T ss_dssp HHHHHHHHHCSSCEEEEEESBC------CCEEE T ss_pred HHHHHHHHHCCCCCEEEECCCC---CCCCCEEE T ss_conf 9999999866998278734765---78876065 No 100 >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier- protein) reductase, NAD; HET: NAD; 1.80A {Anaplasma phagocytophilum HZ} PDB: 3k2e_A* Probab=33.14 E-value=16 Score=16.44 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=31.1 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHH-CCCEEEECCCC Q ss_conf 47886789999999983799899934265302220475421-89389750079 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQR-HCKFLRPANYP 92 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~-~~~ilRP~N~p 92 (274) +++++||...+++.|.+.|++|+-.+..-=..+++.+..+. ...+.-+++.. T Consensus 38 ass~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs 90 (296) T 3k31_A 38 VANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVS 90 (296) T ss_dssp CCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTT T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 99986499999999998699999996887999999999973797069966889 No 101 >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Probab=33.09 E-value=8.7 Score=18.06 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=16.0 Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH Q ss_conf 5989999999863413689988999625762289 Q gi|254780659|r 127 DDPFRTADKILATCPLKEQADVIVFDFHAETTSE 160 (274) Q Consensus 127 d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSE 160 (274) |-|...++.+.+. .+|+ +-+|+++..+ T Consensus 70 Di~~~~~~~~~~~-----gad~--itvh~~~~~~ 96 (218) T 3jr2_A 70 DGGAILSRMAFEA-----GADW--ITVSAAAHIA 96 (218) T ss_dssp SCHHHHHHHHHHH-----TCSE--EEEETTSCHH T ss_pred CCCHHHHHHHHHH-----CCCE--EEEECCCCHH T ss_conf 5727788998874-----4989--9995034547 No 102 >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} Probab=32.81 E-value=24 Score=15.20 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=36.5 Q ss_pred EEEECCCCCCCCHHHHCC---CCEEEEECCCCC----------CCHH-HCCCCCHHHHHHHHHHCCC Q ss_conf 998069762465456403---672898405601----------3712-1035474678988851688 Q gi|254780659|r 174 LVVGTHTHIPTADAQILD---GGTGYITDLGMC----------GDYN-SSIGLDKEEPINRFITQIP 226 (274) Q Consensus 174 aVvGTHTHV~TaD~rILp---~GTayiTDvGMt----------G~~~-SVIG~~~~~~i~rf~t~~p 226 (274) ..-|||.|..-.+.+.-. ++.-|+.--||. |++. -+|.-.-...|.++++... T Consensus 241 l~wgthe~~~p~~~~~h~~G~~~~i~l~~pg~~t~vr~w~P~~g~~~g~li~H~Ea~Si~~~~tv~~ 307 (480) T 2ph5_A 241 IGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPTLGAFHGFLITHAETISLTNFLTLKN 307 (480) T ss_dssp EECCTTCCCCCTTEECCSSSCTTEEEEEEEGGGCEEEECCTTTCSEEEECCCCSHHHHHHHHTCEES T ss_pred HHHHHCEEECCCCCCEEECCCCCCEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEHHHHCCCCC T ss_conf 1010032303544520120787717980488334798778987734799972687045523122455 No 103 >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Probab=32.12 E-value=22 Score=15.52 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=23.7 Q ss_pred CEEEEEEECCCHH-H-HHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9269997202768-8-99999980898886099899991 Q gi|254780659|r 1 MRLLFLGDIVGKT-G-RSIVYEMLPRLIRDFQLDFVIAN 37 (274) Q Consensus 1 MkiLfiGDIvG~~-G-r~~v~~~Lp~l~~~~~~DfvIaN 37 (274) ||||++++-.-.+ | -+.+...+..|.+.|.+.++-.+ T Consensus 1 MKIl~i~~~~~~~~G~~~~~~~l~~~L~~~heV~v~~~~ 39 (413) T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKAHEVIVFGIH 39 (413) T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTTSEEEEEEES T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 948998899999883999999999998658989999757 No 104 >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Probab=31.83 E-value=25 Score=15.09 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=23.6 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 99998089888609989999170047886789999999983799899934 Q gi|254780659|r 17 IVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 17 ~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274) .+.+.++.+|+++.=-.||| -|. .|++.+++|.++|+|.|--| T Consensus 147 ~~~~~i~~vk~~~~~~~VIa--GNV-----~T~e~~~~L~~aGAD~VkVG 189 (351) T 2c6q_A 147 HFVEFVKDVRKRFPQHTIMA--GNV-----VTGEMVEELILSGADIIKVG 189 (351) T ss_dssp HHHHHHHHHHHHCTTSEEEE--EEE-----CSHHHHHHHHHTTCSEEEEC T ss_pred HHHHHHHHHHHHCCCCCEEE--EEE-----CCHHHHHHHHHCCCCEEEEE T ss_conf 67778999998789874798--633-----12899999986678648971 No 105 >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, structural genomics, PSI; 2.00A {Aquifex aeolicus VF5} Probab=31.73 E-value=25 Score=15.08 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=26.2 Q ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 999917004788678999999998379989993426 Q gi|254780659|r 33 FVIANGENSAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 33 fvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) .+++-| +++++||...+++.|.+.|.+|+-.+.. T Consensus 23 ~alVTG--ass~~GIG~aiA~~la~~Ga~V~i~~~~ 56 (285) T 2p91_A 23 RALITG--VANERSIAYGIAKSFHREGAQLAFTYAT 56 (285) T ss_dssp EEEECC--CSSTTSHHHHHHHHHHHTTCEEEEEESS T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 799989--9998679999999999869999998588 No 106 >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Probab=31.56 E-value=20 Score=15.72 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=8.0 Q ss_pred HHHHHHHCCCCEEEECHH Q ss_conf 999998379989993426 Q gi|254780659|r 51 IFCEMMETGIDVITTGNH 68 (274) Q Consensus 51 ~~~~l~~~GvDviT~GNH 68 (274) .++++ ...+|++-.|-. T Consensus 23 ~~~~~-~~~vd~ik~g~~ 39 (221) T 3exr_A 23 AAVSV-GNEVDVIEAGTV 39 (221) T ss_dssp HHHHH-GGGCSEEEECHH T ss_pred HHHHC-CCCCCEEECCEE T ss_conf 99971-887439980545 No 107 >2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* Probab=31.40 E-value=25 Score=15.05 Aligned_cols=64 Identities=16% Similarity=0.376 Sum_probs=29.3 Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCC Q ss_conf 598999999986341368998899962---5762289999997608957799806976246545640367289840560 Q gi|254780659|r 127 DDPFRTADKILATCPLKEQADVIVFDF---HAETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGM 202 (274) Q Consensus 127 d~PF~~~d~~l~~~~~~~~~~~i~VDf---HaEaTSEK~A~g~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDvGM 202 (274) +|-=-++..++++.. -..+.+||| |+.-|.| .+|-|-+|-.+ -.|-| |..-++-||++..++|- T Consensus 201 NnvAiAa~~l~~~~~---~~rV~IvD~DvHHGnGTq~----if~~d~~V~~~-SiH~~----~~~~f~p~tG~~~e~G~ 267 (421) T 2pqp_A 201 NSVAIACRQLQQQSK---ASKILIVDWDVHHGNGTQQ----TFYQDPSVLYI-SLHRH----DDGNFFPGSGAVDEVGA 267 (421) T ss_dssp CHHHHHHHHHHHHST---TCCEEEEECSSSCCHHHHH----HHTTCTTEEEE-EEEEC----GGGTSTTCCCCTTCCCC T ss_pred CHHHHHHHHHHHHCC---CCEEEEEECCCCCCCCCCH----HHCCCCCCCCC-CCCCC----CCCCCCCCCCCHHHCCC T ss_conf 759999999998478---8748999467788866021----21127850122-32346----77788998998887388 No 108 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Probab=31.07 E-value=26 Score=15.01 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=11.0 Q ss_pred CHHHHHHHHHCCCCEEE Q ss_conf 99999999837998999 Q gi|254780659|r 48 TEKIFCEMMETGIDVIT 64 (274) Q Consensus 48 t~~~~~~l~~~GvDviT 64 (274) ++.++..|.++|+|.+- T Consensus 104 ~~~~~~~L~~~Gad~Vi 120 (413) T 3l9w_A 104 DVDHYIRLRQAGVEKPE 120 (413) T ss_dssp SHHHHHHHHHTTCSSCE T ss_pred CHHHHHHHHHCCCCEEE T ss_conf 99999999977989998 No 109 >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Probab=30.42 E-value=22 Score=15.48 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=7.3 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 46789888516886 Q gi|254780659|r 214 KEEPINRFITQIPR 227 (274) Q Consensus 214 ~~~~i~rf~t~~p~ 227 (274) .++.+++.+...|. T Consensus 196 i~~ai~~~~~~~~~ 209 (298) T 3gnn_A 196 VGEALDAAFALNAE 209 (298) T ss_dssp HHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHCCC T ss_conf 78887767764368 No 110 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=30.40 E-value=26 Score=14.94 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=40.9 Q ss_pred HHHHHHHHHCCCCEEEECCEE-CCCCCCCCHHHHHHHHHCCCCEE--------------------------EECHHHH-C Q ss_conf 980898886099899991700-47886789999999983799899--------------------------9342653-0 Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGEN-SAGGFGITEKIFCEMMETGIDVI--------------------------TTGNHVW-D 71 (274) Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgEN-aa~G~Git~~~~~~l~~~GvDvi--------------------------T~GNH~w-d 71 (274) +.|-++-+++++|+||+-.|+ .+.| +++.|.+.|+.|+ |.--+++ + T Consensus 73 ~~i~~~~~~~~iD~vvvGpE~pL~~g------l~D~l~~~gi~v~Gp~~~aa~lE~sK~faK~~m~~~~IPta~~~~~~~ 146 (451) T 2yrx_A 73 EALVQFAKQQAIDLTIVGPEAPLASG------IVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTS 146 (451) T ss_dssp HHHHHHHHHTTCSEEEECSHHHHHTT------HHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESC T ss_pred HHHHHHHHHHCCCEEEECCCHHHHHH------HHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 99999999839999998975788889------999995069940077899999875779899999972979878389978 Q ss_pred CCCHHHHHHH--CCCEEEECCCCCCCCCCCEEEE Q ss_conf 2220475421--8938975007988875407999 Q gi|254780659|r 72 KREALVFSQR--HCKFLRPANYPPNTPGNGSGLY 103 (274) Q Consensus 72 ~kei~~~i~~--~~~ilRP~N~p~~~PG~G~~i~ 103 (274) ..|...++++ .|-+|+|.- .+.|+|..+. T Consensus 147 ~~ea~~~~~~~g~P~VIK~~g---lagGKGv~v~ 177 (451) T 2yrx_A 147 YEEAKAYIEQKGAPIVIKADG---LAAGKGVTVA 177 (451) T ss_dssp HHHHHHHHHHHCSSEEEEECC-------CCEEEE T ss_pred HHHHHHHHHHCCCCEEEECCC---CCCCCCCCCC T ss_conf 999999986049966996164---5567873023 No 111 >2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas} Probab=29.93 E-value=27 Score=14.89 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=8.7 Q ss_pred CCCCHHHHHHHHHHCC Q ss_conf 3547467898885168 Q gi|254780659|r 210 IGLDKEEPINRFITQI 225 (274) Q Consensus 210 IG~~~~~~i~rf~t~~ 225 (274) -|...+.+|++|+.+. T Consensus 96 ~g~~v~eal~~~~~g~ 111 (120) T 2wfb_A 96 EGLTVRQAVQRFLDGQ 111 (120) T ss_dssp TTSBHHHHHHHHHTTC T ss_pred CCCCHHHHHHHHHHCC T ss_conf 9996999999999588 No 112 >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural genomics, joint center for structural genomics; 2.20A {Archaeoglobus fulgidus} Probab=29.72 E-value=27 Score=14.87 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=49.5 Q ss_pred CCHHHHHHHHHCCCCEEEECHHHH--CCCCHHHHHHHCC-CEEEECCCCCCCCCCCEEEEEC----CCCCEEEEEEEEHH Q ss_conf 899999999837998999342653--0222047542189-3897500798887540799984----89928999996000 Q gi|254780659|r 47 ITEKIFCEMMETGIDVITTGNHVW--DKREALVFSQRHC-KFLRPANYPPNTPGNGSGLYCA----KNGSNVLVANIMGR 119 (274) Q Consensus 47 it~~~~~~l~~~GvDviT~GNH~w--d~kei~~~i~~~~-~ilRP~N~p~~~PG~G~~i~~~----~~g~ki~Vinl~Gr 119 (274) -+.+.+.+.++.|++|+|.---.- .-+|+...-++.. ++.--++--.+.| ++.+ ..|.+| ..+.|- T Consensus 96 ~~~~~~~~AL~~G~hVVTANK~~la~~~~~l~~~a~~~~~~~~yEatV~~glP-----ii~~l~~~l~~~~i--~~i~Gi 168 (327) T 3do5_A 96 EGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMP-----VVKLAKRYLALCEI--ESVKGI 168 (327) T ss_dssp CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSC-----CHHHHHTTTTTSCE--EEEEEE T ss_pred HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-----CHHHHHHHCCCCCC--CCHHHH T ss_conf 27999999998489389428268776199999872202438998400354615-----46887743450141--011454 Q ss_pred -------HC--CCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHH Q ss_conf -------05--883325989999999863413689988999625762289999 Q gi|254780659|r 120 -------VF--MNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQC 163 (274) Q Consensus 120 -------~f--M~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A 163 (274) .| |.. -..||..+=+.-.+.-. .|.|-. -|.-+.-++-|.. T Consensus 169 lnGT~nyIl~~m~~-~~~~f~~al~eAq~~G~-aE~DP~-~Dl~G~D~a~Kl~ 218 (327) T 3do5_A 169 FNGTCNYILSRMEE-ERLPYEHILKEAQELGY-AEADPS-YDVEGIDAALKLV 218 (327) T ss_dssp CCHHHHHHHHHHHH-HCCCHHHHHHHHHHTTS-SCSSCH-HHHTSHHHHHHHH T ss_pred HCCHHHHHHHHHHH-CCCCHHHHHHHHHHHCC-CCCCCC-CCCCCHHHHHHHH T ss_conf 15438999997873-38608999999998089-889998-4898876999999 No 113 >2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A Probab=29.39 E-value=27 Score=14.83 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=23.6 Q ss_pred EEEEEEE--CCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH Q ss_conf 2699972--027688999999808988860998999917004788678999999998 Q gi|254780659|r 2 RLLFLGD--IVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM 56 (274) Q Consensus 2 kiLfiGD--IvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~ 56 (274) ||+..|| +=|-++--.+.+.|..+ +.++...=-.-...|+|++....+++. T Consensus 74 kI~I~GDYDvDGiTStaIL~~~L~~l----g~~v~~yIP~R~~eGYGl~~~~i~~~~ 126 (666) T 2zxr_A 74 RIRVHGDYDADGLTGTAILVRGLAAL----GADVHPFIPHRLEEGYGVLMERVPEHL 126 (666) T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHT----TCEEEECCC------------------ T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHC----CCCEEEECCCCCCCCCCCCHHHHHHHH T ss_conf 89999746841689999999999988----996599888976568886999999986 No 114 >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* Probab=28.98 E-value=23 Score=15.29 Aligned_cols=27 Identities=19% Similarity=0.019 Sum_probs=23.3 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECH Q ss_conf 478867899999999837998999342 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGN 67 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GN 67 (274) +|+++||...+++.|.+.|.+|+=.+- T Consensus 14 aag~~GIG~aiA~~la~~G~~V~i~~r 40 (275) T 2pd4_A 14 VANNKSIAYGIAQSCFNQGATLAFTYL 40 (275) T ss_dssp CCSTTSHHHHHHHHHHTTTCEEEEEES T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 999848999999999987999999968 No 115 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Probab=28.56 E-value=28 Score=14.74 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=9.0 Q ss_pred CCHHHHHHHHHHHCCCEEEE Q ss_conf 62289999997608957799 Q gi|254780659|r 156 ETTSEKQCFAHFVDSRASLV 175 (274) Q Consensus 156 EaTSEK~A~g~~lDGrVsaV 175 (274) |..+|...+....+.+|..+ T Consensus 205 ~~~~e~~ll~~~~~~~~DvL 224 (547) T 2bib_A 205 DNVHGAEDKYGPLIGKVDLM 224 (547) T ss_dssp CSTTSHHHHHHHHHCCCSEE T ss_pred CHHHHHHHHHCCCCCCEEEE T ss_conf 80567998646888854699 No 116 >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Probab=28.32 E-value=29 Score=14.71 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=30.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 276889999998089888609989999170047886789999999983799899934 Q gi|254780659|r 10 VGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 10 vG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274) ...+-...+.+.+..--++++.++++.|+++... --.+..+.|...|+|.|-.- T Consensus 15 ~~~~f~~~~~~g~~~~a~~~G~~~~~~~~~~d~~---~q~~~i~~~i~~~vDgiIi~ 68 (291) T 3l49_A 15 TDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQ---TQVSQIQTLIAQKPDAIIEQ 68 (291) T ss_dssp CSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---HHHHHHHHHHHHCCSEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEEC T ss_conf 9988999999999999997499999993899999---99999999997499999977 No 117 >3ojf_A Enoyl-[acyl-carrier-protein] reductase (FABL) (Na; enoyl-ACP reductase, tetramer, rossmann fold, NAD(P) binding oxidoreductase; HET: IMJ NDP; 2.20A {Bacillus cereus} PDB: 2qio_A* 3oje_A Probab=28.27 E-value=21 Score=15.64 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=22.1 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECH Q ss_conf 478867899999999837998999342 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGN 67 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GN 67 (274) +++++||...++++|.+.|.+|+-.+. T Consensus 14 as~~rGIG~aiA~~la~~Ga~V~i~~~ 40 (257) T 3ojf_A 14 VANQRSIAWGIARSLHNAGAKLIFTYA 40 (257) T ss_dssp CCSTTCHHHHHHHHHHTTTCEEEEEEC T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 999866999999999987999999828 No 118 >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii RH} PDB: 2o50_A 3nj8_A* Probab=28.26 E-value=25 Score=15.08 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=22.8 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 4788678999999998379989993426 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) ||+..||...+++.|.+.|.+|+-.+.. T Consensus 17 Aags~GIG~aiA~~La~~Ga~V~i~~~~ 44 (315) T 2o2s_A 17 VADSHGYGWAIAKHLASAGARVALGTWP 44 (315) T ss_dssp CSSSSSHHHHHHHHHHTTTCEEEEEECH T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9999779999999999879999998175 No 119 >1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A Probab=27.98 E-value=24 Score=15.21 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=43.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHC-CC---CEEEECHHHH----------CCCC Q ss_conf 02768899999980898886099899991700478867899999999837-99---8999342653----------0222 Q gi|254780659|r 9 IVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMET-GI---DVITTGNHVW----------DKRE 74 (274) Q Consensus 9 IvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~-Gv---DviT~GNH~w----------d~ke 74 (274) |+|.|.+...++.+.-| ++++++|.+.+-- -.++|.+-..++++. |. +.|-.-..+| +..| T Consensus 5 iY~~~~Cst~rka~~~L-~~~~i~~~~~d~~----k~pls~~eL~~l~~~~~~~~~~lin~~~~~~k~l~~~~~~ls~~e 79 (132) T 1z3e_A 5 LYTSPSCTSCRKARAWL-EEHEIPFVERNIF----SEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQD 79 (132) T ss_dssp EEECTTCHHHHHHHHHH-HHTTCCEEEEETT----TSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGGSBHHH T ss_pred EECCCCCHHHHHHHHHH-HHCCCCEEEEEHH----HCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCCHHH T ss_conf 98699987899999999-9769980772032----138999999999998299899999862788887588643499999 Q ss_pred HHHHHHHCCCEE-EECC Q ss_conf 047542189389-7500 Q gi|254780659|r 75 ALVFSQRHCKFL-RPAN 90 (274) Q Consensus 75 i~~~i~~~~~il-RP~N 90 (274) ++++|-++|.+| ||.= T Consensus 80 ~~~ll~~~P~LikRPIi 96 (132) T 1z3e_A 80 LYRLINEHPGLLRRPII 96 (132) T ss_dssp HHHHHHHCGGGBCSCEE T ss_pred HHHHHHHCHHHEECCEE T ss_conf 99999858202618889 No 120 >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* Probab=27.89 E-value=29 Score=14.66 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=17.3 Q ss_pred CEEEEEEEC-CCHH-HH-HHHHHHHHHHHHHCCCCEEEE Q ss_conf 926999720-2768-89-999998089888609989999 Q gi|254780659|r 1 MRLLFLGDI-VGKT-GR-SIVYEMLPRLIRDFQLDFVIA 36 (274) Q Consensus 1 MkiLfiGDI-vG~~-Gr-~~v~~~Lp~l~~~~~~DfvIa 36 (274) |||+|+.+- +..+ |. +.+.+.-..|+++ +.+.+|. T Consensus 21 MkI~iv~~~~~p~~GG~~~~i~~La~~L~~~-GheV~v~ 58 (406) T 2gek_A 21 MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA-GHEVSVL 58 (406) T ss_dssp CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT-TCEEEEE T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEE T ss_conf 8899989987899987999999999999977-9989999 No 121 >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 Probab=27.86 E-value=29 Score=14.66 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.8 Q ss_pred CCCCHHHHHHHHHCCCCEEEEC Q ss_conf 6789999999983799899934 Q gi|254780659|r 45 FGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 45 ~Git~~~~~~l~~~GvDviT~G 66 (274) .-.|.+..+.|-++|+|+|-.| T Consensus 19 ~~~t~~~i~~l~e~GaDiIEiG 40 (240) T 1viz_A 19 KDLPDEQLEILCESGTDAVIIG 40 (240) T ss_dssp SCCCHHHHHHHHTSCCSEEEEC T ss_pred CCCHHHHHHHHHHCCCCEEEEC T ss_conf 9857999999997499999987 No 122 >1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium FB188} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Probab=27.83 E-value=29 Score=14.66 Aligned_cols=11 Identities=27% Similarity=0.305 Sum_probs=5.8 Q ss_pred HCCCEEEEEEC Q ss_conf 08957799806 Q gi|254780659|r 168 VDSRASLVVGT 178 (274) Q Consensus 168 lDGrVsaVvGT 178 (274) .+||+-.|+|= T Consensus 300 ~~~~vv~vleG 310 (369) T 1zz1_A 300 CDGRIVFVQEG 310 (369) T ss_dssp STTCEEEEECC T ss_pred CCCCEEEEECC T ss_conf 79988999667 No 123 >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Probab=27.58 E-value=30 Score=14.63 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHCCCCEEE--ECCEECCCCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 999808988860998999--9170047886789999999983799899934 Q gi|254780659|r 18 VYEMLPRLIRDFQLDFVI--ANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 18 v~~~Lp~l~~~~~~DfvI--aNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274) +++.+.++|++-+.-||- ..|- -..-.|.+..+.|.+.|+|+|-.| T Consensus 7 i~~~f~~~k~~~~~ali~yltaG~---P~~e~s~~~l~~l~~~G~D~iEiG 54 (271) T 3nav_A 7 YQALFQRLSAAQQGAFVPFVTIGD---PNPEQSLAIMQTLIDAGADALELG 54 (271) T ss_dssp HHHHHHHHHHTTBCEEEEEEETTS---SCHHHHHHHHHHHHHTTCSSEEEE T ss_pred HHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHHHHCCCCEEEEC T ss_conf 999999999749936998983718---987899999999997699999978 No 124 >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} Probab=27.45 E-value=30 Score=14.62 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=19.4 Q ss_pred CCEEEEEECCCCCCCCHHHHC------CCCEEEEECCCCCCCHHHCCCCCHH Q ss_conf 957799806976246545640------3672898405601371210354746 Q gi|254780659|r 170 SRASLVVGTHTHIPTADAQIL------DGGTGYITDLGMCGDYNSSIGLDKE 215 (274) Q Consensus 170 GrVsaVvGTHTHV~TaD~rIL------p~GTayiTDvGMtG~~~SVIG~~~~ 215 (274) +.-..+++|--+.|-. |.| -||- +.-..|-+|+|+..+.. T Consensus 131 ~~~~~i~~TRKt~Pg~--r~l~k~Av~~GGg----~~HR~~L~d~vlikdnH 176 (299) T 2jbm_A 131 GWTGHVAGTRKTTPGF--RLVEKYGLLVGGA----ASHRYDLGGLVMVKDNH 176 (299) T ss_dssp TCCSEEECCSCCCTTC--HHHHHHHHHHTTC----BCCCCSTTSSEEECHHH T ss_pred CCCEEEEECCCCCCCH--HHHHHHHHHHCCC----CCEECCCCCCCCCCCCH T ss_conf 9805998655135362--8999999986387----52431576433014217 No 125 >3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} Probab=25.89 E-value=25 Score=15.04 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=55.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH-CCCC---EEEECHHHH------------CC Q ss_conf 0276889999998089888609989999170047886789999999983-7998---999342653------------02 Q gi|254780659|r 9 IVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME-TGID---VITTGNHVW------------DK 72 (274) Q Consensus 9 IvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~-~GvD---viT~GNH~w------------d~ 72 (274) |+|.|++...++.+.-|+ +++++|.+.+--. .++|.+...++++ .|.+ +|-.-..+| +. T Consensus 7 iy~~~~Cst~rka~~~L~-~~gi~~~~~d~~~----~p~s~~eL~~ll~~~g~~~~~li~~~~~~~k~l~l~~~~~~ls~ 81 (120) T 3fz4_A 7 FYEYPKCSTCRRAKAELD-DLAWDYDAIDIKK----NPPAASLIRNWLENSGLELKKFFNTSGQSYRALGLKDKLHQLSL 81 (120) T ss_dssp EEECSSCHHHHHHHHHHH-HHTCCEEEEETTT----SCCCHHHHHHHHHHSCCCGGGGBCTTSHHHHHTTHHHHGGGCCH T ss_pred EECCCCCHHHHHHHHHHH-HCCCCCEEEEECC----CCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHCCHHHCCCCCCH T ss_conf 877999878999999999-6799858985003----69699999999998497699987603307887370101200599 Q ss_pred CCHHHHHHHCCCEE-EEC Q ss_conf 22047542189389-750 Q gi|254780659|r 73 REALVFSQRHCKFL-RPA 89 (274) Q Consensus 73 kei~~~i~~~~~il-RP~ 89 (274) .|++++|-++|.|+ ||. T Consensus 82 ~e~i~ll~~~P~LikRPI 99 (120) T 3fz4_A 82 DEAANLLASDGMLIKRPL 99 (120) T ss_dssp HHHHHHHHHCGGGBCSCE T ss_pred HHHHHHHHHCHHHEECCE T ss_conf 999999995904324767 No 126 >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 Probab=24.90 E-value=33 Score=14.32 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=30.4 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHC-CCCEE Q ss_conf 9269997202768899999980898886099899991700478867899999999837-99899 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMET-GIDVI 63 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~-GvDvi 63 (274) |||+.+| .|+-|+...+... +.+.+++++-- .++.++++.+. ++.++ T Consensus 5 m~ViI~G--~G~~G~~la~~L~-----~~g~~v~vId~---------d~~~~~~~~~~~~~~vi 52 (140) T 1lss_A 5 MYIIIAG--IGRVGYTLAKSLS-----EKGHDIVLIDI---------DKDICKKASAEIDALVI 52 (140) T ss_dssp CEEEEEC--CSHHHHHHHHHHH-----HTTCEEEEEES---------CHHHHHHHHHHCSSEEE T ss_pred CEEEEEC--CCHHHHHHHHHHH-----HCCCCEEEEEE---------CHHHHHHHHHCCCCEEE T ss_conf 9999999--8999999999999-----77995899850---------15665544531474599 No 127 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Probab=24.77 E-value=33 Score=14.30 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=14.6 Q ss_pred EEEEECCCCCHHHH--HHHHHHHCC Q ss_conf 89996257622899--999976089 Q gi|254780659|r 148 VIVFDFHAETTSEK--QCFAHFVDS 170 (274) Q Consensus 148 ~i~VDfHaEaTSEK--~A~g~~lDG 170 (274) +.=+-||-|-+++. .-+-.|+.- T Consensus 190 I~GvQFHPEkS~~~G~~ll~nFlk~ 214 (555) T 1jvn_A 190 IFATQFHPEKSGKAGLNVIENFLKQ 214 (555) T ss_dssp EEEESSBGGGSHHHHHHHHHHHHTT T ss_pred EEEEECCCCCCCHHHHHHHHHHHHC T ss_conf 9999899983167799999999826 No 128 >1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Probab=24.43 E-value=34 Score=14.26 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=9.8 Q ss_pred HHHHHHHHHCCCCEEEECHHHHC Q ss_conf 99999998379989993426530 Q gi|254780659|r 49 EKIFCEMMETGIDVITTGNHVWD 71 (274) Q Consensus 49 ~~~~~~l~~~GvDviT~GNH~wd 71 (274) ......|++.++.++..--+ || T Consensus 80 ~~~i~~l~k~~i~vy~~Ht~-~D 101 (247) T 1nmo_A 80 RNRLKTLLANDINLYGWHLP-LD 101 (247) T ss_dssp HHHHHHHHHTTCEEEECCHH-HH T ss_pred HHHHHHHHHCCCCEEEECCC-HH T ss_conf 89999999789727983476-44 No 129 >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Probab=24.40 E-value=34 Score=14.26 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=5.4 Q ss_pred HHHHHHCCCCEEE Q ss_conf 9999837998999 Q gi|254780659|r 52 FCEMMETGIDVIT 64 (274) Q Consensus 52 ~~~l~~~GvDviT 64 (274) ++--.+.|+-..+ T Consensus 81 A~aa~~~g~~~~~ 93 (332) T 1vcf_A 81 AEAAEALGVGMML 93 (332) T ss_dssp HHHHHHHTCEEEE T ss_pred HHHHHHCCCCEEE T ss_conf 9999975987787 No 130 >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Probab=24.32 E-value=34 Score=14.25 Aligned_cols=62 Identities=5% Similarity=0.069 Sum_probs=36.0 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHC Q ss_conf 2699972027688999999808988860998999917004788678999999998379989993426530 Q gi|254780659|r 2 RLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD 71 (274) Q Consensus 2 kiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd 71 (274) .|++.|.-........+...+..+++ ..+...+.. .-++++.++.|.++|+|.++.|-.+++ T Consensus 103 ~i~l~~g~~~~~~~~~~~~~i~~i~~-~~~~i~~~~-------g~~~~e~l~~L~~aG~~~~~~~~et~~ 164 (348) T 3iix_A 103 TIVLQSGEDPYXMPDVISDIVKEIKK-MGVAVTLSL-------GEWPREYYEKWKEAGADRYLLRHETAN 164 (348) T ss_dssp EEEEEESCCGGGTTHHHHHHHHHHHT-TSCEEEEEC-------CCCCHHHHHHHHHHTCCEEECCCBCSC T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCC-CCEEEEECC-------CCCHHHHHHHHHHHCCCEEEECHHHCC T ss_conf 89982588876648999999874033-321232024-------543089999999828967985634434 No 131 >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) precursor; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* Probab=24.32 E-value=33 Score=14.29 Aligned_cols=28 Identities=11% Similarity=0.066 Sum_probs=23.1 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 4788678999999998379989993426 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) +++.+||...+++.|.+.|.+|+-.+.. T Consensus 16 as~~~GIG~aiA~~la~~Ga~V~i~~~~ 43 (297) T 1d7o_A 16 IADDNGYGWAVAKSLAAAGAEILVGTWV 43 (297) T ss_dssp CSSSSSHHHHHHHHHHHTTCEEEEEEEH T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 8999639999999999879989998276 No 132 >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* Probab=24.14 E-value=33 Score=14.34 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=23.5 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 4788678999999998379989993426 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) +++|.||...+++.|.+.|.+|+-.+.. T Consensus 17 ass~~GIG~aia~~la~~Ga~V~i~~r~ 44 (265) T 1qsg_A 17 VASKLSIAYGIAQAMHREGAELAFTYQN 44 (265) T ss_dssp CCSTTSHHHHHHHHHHHTTCEEEEEESS T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9985018999999999869999999588 No 133 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=23.86 E-value=30 Score=14.59 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=41.7 Q ss_pred HHHHHHHHHCCCCEEEECCEEC-CCC------------CCCCHHHHH---------H-HHHCCCCEEEECHHHH-CCCCH Q ss_conf 9808988860998999917004-788------------678999999---------9-9837998999342653-02220 Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGENS-AGG------------FGITEKIFC---------E-MMETGIDVITTGNHVW-DKREA 75 (274) Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgENa-a~G------------~Git~~~~~---------~-l~~~GvDviT~GNH~w-d~kei 75 (274) +.|-.+-+++++|+||+--|.- +.| ||.|++.++ + +.++||- |.=-+.+ +..|. T Consensus 57 ~~i~~~~~~~~idlvivgpe~pL~~Gl~D~l~~~gi~vfGP~~~aA~lE~sK~fak~~m~~~~IP--ta~~~~~~~~~~a 134 (431) T 3mjf_A 57 AGLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIP--SAEYQNFTDVEAA 134 (431) T ss_dssp HHHHHHHHHTTEEEEEECSHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCS--BCCEEEESCHHHH T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCC--CCCEEEECCHHHH T ss_conf 99999999829998998974898877999997479933387788878776199999998752658--8746995899999 Q ss_pred HHHHHHC--CCEEEECCCCCCCCCCCEEE Q ss_conf 4754218--93897500798887540799 Q gi|254780659|r 76 LVFSQRH--CKFLRPANYPPNTPGNGSGL 102 (274) Q Consensus 76 ~~~i~~~--~~ilRP~N~p~~~PG~G~~i 102 (274) ..|+++. |-+++|.-. +.|+|..+ T Consensus 135 ~~~~~~~~~p~VIK~dgl---a~GKGV~v 160 (431) T 3mjf_A 135 LAYVRQKGAPIVIKADGL---AAGKGVIV 160 (431) T ss_dssp HHHHHHHCSSEEEEESSS---CTTCSEEE T ss_pred HHHHHCCCCCEEEEECCC---CCCCCCEE T ss_conf 987525698779971666---78776267 No 134 >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Probab=23.59 E-value=32 Score=14.42 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=40.1 Q ss_pred HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCCEEEEC Q ss_conf 99808988860998999917004788678999999998379989993426530222047542189389750 Q gi|254780659|r 19 YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPA 89 (274) Q Consensus 19 ~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~ilRP~ 89 (274) .+.+.+|+++|..+++|. -|-=++.+.+++..++|+|.+-+=+ ++ +|+..+-.+..-..=|- T Consensus 46 ~~~i~~l~~~~~~~~~vG------aGTV~~~~~~~~a~~aGA~FivsP~--~~-~~v~~~a~~~~i~~iPG 107 (212) T 2v82_A 46 EQSIPAIVDAYGDKALIG------AGTVLKPEQVDALARMGCQLIVTPN--IH-SEVIRRAVGYGMTVCPG 107 (212) T ss_dssp HHHHHHHHHHHTTTSEEE------EECCCSHHHHHHHHHTTCCEEECSS--CC-HHHHHHHHHTTCEEECE T ss_pred HHHHHHHHHHCCCCCEEE------EECCCCHHHHHHHHHCCCCEEECCC--CC-HHHHHHHHHCCCCCCCC T ss_conf 999999999668750785------3022247889999854897898998--99-89999999758763388 No 135 >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleotide and nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Probab=22.76 E-value=36 Score=14.05 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=9.1 Q ss_pred CHHHHHHHHHCCCCEEEEC Q ss_conf 9999999983799899934 Q gi|254780659|r 48 TEKIFCEMMETGIDVITTG 66 (274) Q Consensus 48 t~~~~~~l~~~GvDviT~G 66 (274) |++.+++|.++|+|.|--| T Consensus 159 T~e~a~~L~~aGAD~VkVG 177 (336) T 1ypf_A 159 TPEAVRELENAGADATKVG 177 (336) T ss_dssp SHHHHHHHHHHTCSEEEEC T ss_pred CHHHHHHHHHHCCCEEEEC T ss_conf 7899999998398589962 No 136 >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Probab=22.67 E-value=36 Score=14.04 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=31.6 Q ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCC Q ss_conf 999917004788678999999998379989993426530222047542189 Q gi|254780659|r 33 FVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHC 83 (274) Q Consensus 33 fvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~ 83 (274) .+++-| ++.||...++++|.+.|.+|+-.+...=.-++..+.+.... T Consensus 31 valVTG----as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g 77 (276) T 2b4q_A 31 IALVTG----GSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG 77 (276) T ss_dssp EEEEET----TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS T ss_pred EEEEEC----CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC T ss_conf 799928----88789999999999869989999798899999999975049 No 137 >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Probab=22.66 E-value=22 Score=15.45 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=6.0 Q ss_pred EEEECCCCCCCC Q ss_conf 998069762465 Q gi|254780659|r 174 LVVGTHTHIPTA 185 (274) Q Consensus 174 aVvGTHTHV~Ta 185 (274) .+++|--..|-. T Consensus 137 ~i~~TRKt~Pg~ 148 (294) T 3c2e_A 137 TIAGTRKTTPGL 148 (294) T ss_dssp EEECCSCCCTTC T ss_pred EEEECCCCCCCC T ss_conf 797347667674 No 138 >1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei} Probab=22.40 E-value=37 Score=14.01 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=75.8 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCC-CCEEEECHHHHCCCCHHHHHHHCCCEEEECCCC Q ss_conf 8999999808988860998999917004788678999999998379-989993426530222047542189389750079 Q gi|254780659|r 14 GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETG-IDVITTGNHVWDKREALVFSQRHCKFLRPANYP 92 (274) Q Consensus 14 Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~G-vDviT~GNH~wd~kei~~~i~~~~~ilRP~N~p 92 (274) =++.+.+-|.+|+..| +|+.....-+....... -+..++|++.| |..|-..||..++-+...-....+.+.-..|+. T Consensus 93 ~~~~~~~SL~rL~~d~-iDl~~lH~~~~~~~~e~-~~al~~l~~~Gkir~iG~S~~~~~~l~~~~~~~~~~~~~~~~~~~ 170 (281) T 1vbj_A 93 TLSAFEKSIKKLGLEY-VDLYLIHWPGKDKFIDT-WKAFEKLYADKKVRAIGVSNFHEHHIEELLKHCKVAPMVNQIELH 170 (281) T ss_dssp HHHHHHHHHHHHTCSC-BSEEEESCCCSSCHHHH-HHHHHHHHHTTSBSCEEEESCCHHHHHHHHTSCSSCCSEEEEECB T ss_pred HHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHH-HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 9999999999829990-60576336742322689-999999998799647975687699999998731567520256504 Q ss_pred CCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCE Q ss_conf 88875407999848992899999600005883325989999999863413689988999625762289999997608957 Q gi|254780659|r 93 PNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRA 172 (274) Q Consensus 93 ~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~~lDGrV 172 (274) ...+-....-+..++|..+....-+++-+.. +.+ ....+-+++ . .|.--.|++|-+.--+ T Consensus 171 ~~~~~~~~~~~~~~~gi~v~a~~pl~~~~~~---~~~--~l~~ia~~~--------------~-~~~aqlal~~~l~~~~ 230 (281) T 1vbj_A 171 PLLNQKALCEYCKSKNIAVTAWSPLGQGHLV---EDA--RLKAIGGKY--------------G-KTAAQVMLRWEIQAGV 230 (281) T ss_dssp TTBCCHHHHHHHHHTTCEEEEESTTGGGTTT---TCH--HHHHHHHTT--------------T-CCHHHHHHHHHHHTTC T ss_pred CCHHHHHHHHHHHHCCEEEEEECCCCCCCCC---CCH--HHHHHHHHH--------------C-CCHHHHHHHHHHHCCC T ss_conf 5221689988999779179994605677753---106--888999885--------------9-8699999999873995 Q ss_pred EEEEECCC Q ss_conf 79980697 Q gi|254780659|r 173 SLVVGTHT 180 (274) Q Consensus 173 saVvGTHT 180 (274) +.++|+-+ T Consensus 231 vvI~G~~~ 238 (281) T 1vbj_A 231 ITIPKSGN 238 (281) T ss_dssp EECCBCSC T ss_pred EEEECCCC T ss_conf 89989999 No 139 >3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae TIGR4} SCOP: d.159.1.7 Probab=22.34 E-value=37 Score=14.00 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=37.9 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHC Q ss_conf 92699972027688999999808988860998999917004788678999999998379989993426530 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD 71 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd 71 (274) |||+.|.|+=|. ..++++.|..+++ ++|.||.-|..... ...+ ...++- .-.|||=|+ T Consensus 7 ~kI~viSD~Hgn--~~al~~vl~~~~~--~~D~iih~GD~~~~--~~~~------~~~~~~-~V~GN~D~~ 64 (176) T 3ck2_A 7 QTIIVMSDSHGD--SLIVEEVRDRYVG--KVDAVFHNGDSELR--PDSP------LWEGIR-VVKGNMDFY 64 (176) T ss_dssp EEEEEECCCTTC--HHHHHHHHHHHTT--TSSEEEECSCCCSC--TTCG------GGTTEE-ECCCTTCCS T ss_pred CEEEEEECCCCC--HHHHHHHHHHHHC--CCCEEEECCCCCCC--CHHH------HHCCCE-EEECCCCCC T ss_conf 899999006899--8999999999777--99999989987751--2336------647998-973897952 No 140 >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Probab=22.26 E-value=22 Score=15.42 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=46.9 Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHCCC--EEEECCCCCCCCCCCEEEE----ECCCCCEEEEEEE Q ss_conf 886789999999983799899934265302220475421893--8975007988875407999----8489928999996 Q gi|254780659|r 43 GGFGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCK--FLRPANYPPNTPGNGSGLY----CAKNGSNVLVANI 116 (274) Q Consensus 43 ~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei~~~i~~~~~--ilRP~N~p~~~PG~G~~i~----~~~~g~ki~Vinl 116 (274) ++.||...++++|.+.|.+|+-.+-..=.-++....+.+... ..-+++... +..=-..+ ..-++.--.++|- T Consensus 17 as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~~idilvnn 94 (260) T 2ae2_A 17 GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHFHGKLNILVNN 94 (260) T ss_dssp CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHTTTCCCEEEEC T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 88889999999999869999999698899999999987249828999877899--9999999999999849995399989 Q ss_pred EHHHCCCCCCCCHHHHHHHHHH Q ss_conf 0000588332598999999986 Q gi|254780659|r 117 MGRVFMNPLLDDPFRTADKILA 138 (274) Q Consensus 117 ~Gr~fM~~~~d~PF~~~d~~l~ 138 (274) -|.....+..|.+.+..+++++ T Consensus 95 AG~~~~~~~~~~~~e~~~~~~~ 116 (260) T 2ae2_A 95 AGIVIYKEAKDYTVEDYSLIMS 116 (260) T ss_dssp CCCCCCCCGGGCCHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHH T ss_conf 9878888756699999999999 No 141 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=21.88 E-value=38 Score=13.94 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=42.5 Q ss_pred HHHHHHHHCCCCEEEECCEEC-CC------------CCCCCHHHHH----------HHHHCCCCEEEECHHH-HCCCCHH Q ss_conf 808988860998999917004-78------------8678999999----------9983799899934265-3022204 Q gi|254780659|r 21 MLPRLIRDFQLDFVIANGENS-AG------------GFGITEKIFC----------EMMETGIDVITTGNHV-WDKREAL 76 (274) Q Consensus 21 ~Lp~l~~~~~~DfvIaNgENa-a~------------G~Git~~~~~----------~l~~~GvDviT~GNH~-wd~kei~ 76 (274) .|-++-++++|||||+--|.- +. =||.+++.++ -+.++|+- |.--.. .+..|.. T Consensus 74 ~l~~~~~~~~iDlvvvGpE~pL~~Gi~D~l~~~gi~vfGps~~~A~lE~sK~f~k~~m~~~~IP--ta~~~~~~~~~ea~ 151 (442) T 3lp8_A 74 EVIQVCKKEKIELVVIGPETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIP--TAKYGYFVDTNSAY 151 (442) T ss_dssp HHHHHHHHTTCCEEEECSHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCC--BCCEEEESSHHHHH T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCHHHHHHHHHHHCCC--CCCHHHCCCHHHHH T ss_conf 9999999829999998983898878899997489947864788988753689999999986888--75100138899999 Q ss_pred HHHHHC--CCEEEECCCCCCCCCCCEEEE Q ss_conf 754218--938975007988875407999 Q gi|254780659|r 77 VFSQRH--CKFLRPANYPPNTPGNGSGLY 103 (274) Q Consensus 77 ~~i~~~--~~ilRP~N~p~~~PG~G~~i~ 103 (274) .++++. |-+|+|.- .+.|+|..+. T Consensus 152 ~~~~~~~~P~VIK~dg---la~GKGV~i~ 177 (442) T 3lp8_A 152 KFIDKHKLPLVVKADG---LAQGKGTVIC 177 (442) T ss_dssp HHHHHSCSSEEEEESS---CCTTTSEEEE T ss_pred HHHHHCCCCEEEECCC---CCCCCEEEEE T ss_conf 9986079978997476---6789759997 No 142 >3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae} Probab=21.62 E-value=38 Score=13.91 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=24.7 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH Q ss_conf 7688999999808988860998999917004788678999999998 Q gi|254780659|r 11 GKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM 56 (274) Q Consensus 11 G~~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~ 56 (274) .++-..+..+|...|+++|+ +.+|+|==+..+.-+.-.+.|++.. T Consensus 279 ~~~~~~a~~~HF~~L~~~YG-~~~iVNLl~~k~~E~~L~~~y~~~v 323 (505) T 3lwt_X 279 GENSLDATKKHFDQQKELYG-DNYLVNLVNQKGHELPVKEGYESVV 323 (505) T ss_dssp CHHHHHHHHHHHHHHHHHHS-EEEEEEECCCSSCCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCHHHHHHHHHHH T ss_conf 77628999999999998729-8338982025886217789999999 No 143 >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} Probab=21.51 E-value=38 Score=13.89 Aligned_cols=27 Identities=15% Similarity=-0.047 Sum_probs=22.3 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEECH Q ss_conf 478867899999999837998999342 Q gi|254780659|r 41 SAGGFGITEKIFCEMMETGIDVITTGN 67 (274) Q Consensus 41 aa~G~Git~~~~~~l~~~GvDviT~GN 67 (274) ++++.||...+++.|.+.|.+|+-..- T Consensus 22 aa~s~GIG~aiA~~la~~Ga~V~~~~~ 48 (271) T 3ek2_A 22 LLSNRSIAYGIAKACKREGAELAFTYV 48 (271) T ss_dssp CCSTTSHHHHHHHHHHHTTCEEEEEES T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 987608999999999986999999958 No 144 >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Probab=21.48 E-value=34 Score=14.23 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=24.8 Q ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 9999170047886789999999983799899934 Q gi|254780659|r 33 FVIANGENSAGGFGITEKIFCEMMETGIDVITTG 66 (274) Q Consensus 33 fvIaNgENaa~G~Git~~~~~~l~~~GvDviT~G 66 (274) .+++-| |++..||...+++.|.+.|.+|+-.+ T Consensus 22 valVTG--AsG~~GIG~aia~~la~~Ga~V~i~~ 53 (267) T 3gdg_A 22 VVVVTG--ASGPKGMGIEAARGCAEMGAAVAITY 53 (267) T ss_dssp EEEETT--CCSSSSHHHHHHHHHHHTSCEEEECB T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 899959--89997089999999998699899984 No 145 >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} Probab=21.36 E-value=39 Score=13.88 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=17.6 Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHH Q ss_conf 7899999999837998999342653 Q gi|254780659|r 46 GITEKIFCEMMETGIDVITTGNHVW 70 (274) Q Consensus 46 Git~~~~~~l~~~GvDviT~GNH~w 70 (274) -+..++.+...++|+|+||.|+-.| T Consensus 43 ~~~~~~~~~Q~~aGld~It~GdFs~ 67 (755) T 2nq5_A 43 ELRLDFLKKQLNAGLDLIPVGDFSL 67 (755) T ss_dssp HHHHHHHHHHHHTTCSBEEESCCCS T ss_pred HHHHHHHHHHHHCCCCEECCCCCCC T ss_conf 9999999999985989616898031 No 146 >2pkf_A Adenosine kinase; transferase, structural genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Probab=21.33 E-value=18 Score=16.00 Aligned_cols=145 Identities=11% Similarity=0.111 Sum_probs=63.3 Q ss_pred CEEEEEEECCCH-----HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCH Q ss_conf 926999720276-----889999998089888609989999170047886789999999983799899934265302220 Q gi|254780659|r 1 MRLLFLGDIVGK-----TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWDKREA 75 (274) Q Consensus 1 MkiLfiGDIvG~-----~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH~wd~kei 75 (274) |||+.+|++.=. +++ .....+|.-..+....|.+-.-+-..||.+. .++..|-..|.++--.|---=|..+. T Consensus 11 m~i~v~G~~~~D~i~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~GG~a~--NvA~~l~~LG~~v~~~~~vG~D~~~~ 87 (334) T 2pkf_A 11 MTIAVTGSIATDHLMRFPGR-FSEQLLPEHLHKVSLSFLVDDLVMHRGGVAG--NMAFAIGVLGGEVALVGAAGADFADY 87 (334) T ss_dssp SEEEEESCCEEEEEEECSSC-THHHHTTSCGGGCCCCCCCSEEEEEEECHHH--HHHHHHHHTTCEEEEECEECGGGHHH T ss_pred CEEEEECCCEEEEEEECCCC-CHHCCCCCCCCCCCCEEECCCEEEECCCHHH--HHHHHHHHCCCCEEEEEEECCCHHHH T ss_conf 87999885631477703784-1110375435657642764741562595799--99999998799879999957888999 Q ss_pred HHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCC Q ss_conf 47542189389750079888754079998489928999996000058833259899999998634136899889996257 Q gi|254780659|r 76 LVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHA 155 (274) Q Consensus 76 ~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~d~PF~~~d~~l~~~~~~~~~~~i~VDfHa 155 (274) ...+++..==++..-..+..+-.-+.++...+|.+..... -|...- . ....+. .+.+.+ ...+..+++-+. T Consensus 88 ~~~L~~~gv~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~-~~~~~~-~-~~~~~~---~~~~~~---~~~~~~~~~~~~ 158 (334) T 2pkf_A 88 RDWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIASFY-PGAMSE-A-RNIKLA---DVVSAI---GKPELVIIGAND 158 (334) T ss_dssp HHHHHTTTEECTTCEECSSCCCEEEEEEECTTCCEEEEEE-CGGGGG-G-GGCCHH---HHHHHH---CSCSEEEEESCC T ss_pred HHHHHHCCCCCCCEEECCCCCCEEEEEEEECCCCEEEEEC-CCCHHH-H-HHHHHH---HHHHHC---CCCEEEEECCCC T ss_conf 9999975998544046189986699999906885544433-763055-6-554321---012103---432055520578 Q ss_pred CC Q ss_conf 62 Q gi|254780659|r 156 ET 157 (274) Q Consensus 156 Ea 157 (274) -. T Consensus 159 ~~ 160 (334) T 2pkf_A 159 PE 160 (334) T ss_dssp HH T ss_pred HH T ss_conf 68 No 147 >1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* Probab=21.21 E-value=39 Score=13.85 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=12.5 Q ss_pred EEECCEECCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 99917004788678999999998379989993 Q gi|254780659|r 34 VIANGENSAGGFGITEKIFCEMMETGIDVITT 65 (274) Q Consensus 34 vIaNgENaa~G~Git~~~~~~l~~~GvDviT~ 65 (274) +|+-=||+-.+ .+.-++.|+|.|=+ T Consensus 9 ~~~hr~NTl~a-------f~~ai~~Gad~iE~ 33 (285) T 1xx1_A 9 NLAHMVNAVAQ-------IPDFLDLGANALEA 33 (285) T ss_dssp EEESCCCSTTH-------HHHHHHHTCSEEEE T ss_pred EECCHHHHHHH-------HHHHHHCCCCEEEE T ss_conf 43102228999-------99999859399999 No 148 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=21.10 E-value=39 Score=13.84 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=26.2 Q ss_pred HHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEE Q ss_conf 98089888609989999170047886789999999983799899 Q gi|254780659|r 20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVI 63 (274) Q Consensus 20 ~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi 63 (274) +.+-.+-+++++|+||+..|+.. ...+++.|-+.|+-++ T Consensus 52 ~~i~~~~~~~~id~vi~g~e~~l-----~~~~a~~l~~~gi~~~ 90 (424) T 2yw2_A 52 EKLAEFAKNEGVDFTIVGPEAPL-----VEGIVDEFEKRGLKIF 90 (424) T ss_dssp HHHHHHHHHHTCSEEEECSHHHH-----HTTHHHHHHHTTCCEE T ss_pred HHHHHHHHHHCCCEEEECCCHHH-----HHHHHHHHHHCCCCCC T ss_conf 99999999969999998984788-----8889999986798313 No 149 >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, structural genomics, NPPSFA; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* Probab=21.05 E-value=39 Score=13.83 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=18.4 Q ss_pred HHHHHHHHHCCCCEEEECHHHHCCCCHHHH Q ss_conf 999999983799899934265302220475 Q gi|254780659|r 49 EKIFCEMMETGIDVITTGNHVWDKREALVF 78 (274) Q Consensus 49 ~~~~~~l~~~GvDviT~GNH~wd~kei~~~ 78 (274) .+.++.++++|+|.+|- |..--+|.+.- T Consensus 68 ~~~~~~~~~~gad~~Tv--h~~~g~~~i~~ 95 (208) T 2czd_A 68 RLIARKVFGAGADYVIV--HTFVGRDSVMA 95 (208) T ss_dssp HHHHHHHHHTTCSEEEE--ESTTCHHHHHH T ss_pred HHHHHHHHHCCCCEEEE--ECCCCHHHHHH T ss_conf 99999976169988997--40278789987 No 150 >3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} Probab=20.32 E-value=41 Score=13.73 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=36.3 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHHCCCCEEEECHH Q ss_conf 999999808988860998999917004788678999999998379989993426 Q gi|254780659|r 15 RSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNH 68 (274) Q Consensus 15 r~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDviT~GNH 68 (274) +.+++.++..+|+..+..-+++=--.-|=|.|+ .++++.|.++|||.+--.+- T Consensus 16 l~al~~N~~~ir~~~~~~~i~aVVKanAYGhG~-~~va~~l~~~Gv~~faVa~~ 68 (380) T 3co8_A 16 KSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGL-LQVSKIARECGVDGLAVSVL 68 (380) T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECHHHHHTTCH-HHHHHHHGGGTCCEEEESSH T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCH-HHHHHHHHHCCCCEEEEEEH T ss_conf 999999999998557998499999743464789-99999999869799999199 No 151 >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Probab=20.13 E-value=41 Score=13.71 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=49.5 Q ss_pred EEEEECCCH-HHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHH Q ss_conf 999720276-88999999808988860998999917004788678-99999999837998999342653022204754 Q gi|254780659|r 4 LFLGDIVGK-TGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGI-TEKIFCEMMETGIDVITTGNHVWDKREALVFS 79 (274) Q Consensus 4 LfiGDIvG~-~Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Gi-t~~~~~~l~~~GvDviT~GNH~wd~kei~~~i 79 (274) +++=|+-+. .++......+.++.++..+.+.+ |-|| +.+.+++++++|+|-+..|..++.+++.+.-+ T Consensus 48 i~ivDl~~~~~~~~~~~~~i~~i~~~~~~pi~~--------gGGIr~~e~~~~ll~~G~~kvii~S~~~~~~~~~~~~ 117 (252) T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAERVFIPLTV--------GGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIREL 117 (252) T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEE--------ESSCCSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHH T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEE--------ECCCCCHHHHHHHHHCCCCEEEECCHHHCCHHHHHHH T ss_conf 999953254233402899999987514874577--------3682678887899873898999884243078999999 No 152 >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Probab=20.12 E-value=41 Score=13.71 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=47.1 Q ss_pred CCCHHHHHHHHHHHCCCCC-------------CCCEEEEECCCCCHHHHHHHH----HHHCCCEEEEEECCCCCCCCHH- Q ss_conf 2598999999986341368-------------998899962576228999999----7608957799806976246545- Q gi|254780659|r 126 LDDPFRTADKILATCPLKE-------------QADVIVFDFHAETTSEKQCFA----HFVDSRASLVVGTHTHIPTADA- 187 (274) Q Consensus 126 ~d~PF~~~d~~l~~~~~~~-------------~~~~i~VDfHaEaTSEK~A~g----~~lDGrVsaVvGTHTHV~TaD~- 187 (274) +..++..+.+.|+..+.-. +.-.++-|+-+..||=+.++. .+=+.|+-++.|-|.--.+.+. T Consensus 306 lGi~~e~i~~aL~~f~g~~~R~e~~~ei~~~~~~~~iiDDya~~p~si~a~l~al~~~~~~~~ii~i~~~~~~~~~~~~~ 385 (475) T 1p3d_A 306 EGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLF 385 (475) T ss_dssp TTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHHHHTH T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH T ss_conf 49999999976764378753110688999548978999767889799999999998656997699995477773278999 Q ss_pred ----HHCC-CCEEEEECCCCCCCHHHCCCCCHHHHHHHHH Q ss_conf ----6403-6728984056013712103547467898885 Q gi|254780659|r 188 ----QILD-GGTGYITDLGMCGDYNSSIGLDKEEPINRFI 222 (274) Q Consensus 188 ----rILp-~GTayiTDvGMtG~~~SVIG~~~~~~i~rf~ 222 (274) +.+. --..+++++--.| -.-..|.+.+...+.+. T Consensus 386 ~e~~~~l~~~d~vil~~i~~a~-e~~~~g~~~~~i~~~l~ 424 (475) T 1p3d_A 386 DDFVQVLSQVDALIMLDVYAAG-EAPIVGADSKSLCRSIR 424 (475) T ss_dssp HHHHHHHTTSSEEEEECCBCTT-CCCCTTCSHHHHHHHHH T ss_pred HHHHHHHHHCCEEEECCCCCCC-CCCCCCCCHHHHHHHHH T ss_conf 9999999849999987766776-66545848999999998 No 153 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Probab=20.02 E-value=41 Score=13.69 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=18.7 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9269997202768899999980898886099899991 Q gi|254780659|r 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIAN 37 (274) Q Consensus 1 MkiLfiGDIvG~~Gr~~v~~~Lp~l~~~~~~DfvIaN 37 (274) |||||++. -...+. .+.++.++++.|+.+.. T Consensus 1 MKIl~~~~--~~~~~~----~~e~~~~~~~~ev~~~~ 31 (331) T 1xdw_A 1 MKVLCYGV--RDVELP----IFEACNKEFGYDIKCVP 31 (331) T ss_dssp CEEEECSC--CTTTHH----HHHHHGGGTCCEEEECS T ss_pred CEEEEECC--CCCCHH----HHHHHHHHCCCEEEEEC T ss_conf 98999815--855679----99997656495899917 Done!