RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62] (274 letters) >1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} (A:) Length = 281 Score = 153 bits (387), Expect = 2e-38 Identities = 88/278 (31%), Positives = 134/278 (48%), Gaps = 10/278 (3%) Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 ++ +FLGD+ GK GR+I+ L +L +Q D VI N EN+ G G++ K + + E G+ Sbjct: 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64 Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSG---LYCAKNGSNVLVANIM 117 + IT GNH W ++ L +RP N + + G L N + + + N++ Sbjct: 65 NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124 Query: 118 GRVFMNPL-LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176 G P +PF+ +++ D+ + DFHAETTSEK F D + + Sbjct: 125 GTSVPLPFKTTNPFKVLKELILKRD----CDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180 Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGDY-NSSIGLDKEEPINRFITQIPRNRFVIANG 235 GTHTH+P+AD +I G+ YITD+GMCG S IG + E+ I F F ++ Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239 Query: 236 PATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFW 273 A L G+ E+ T K IRI + Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDY 277 >2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} (A:) Length = 252 Score = 151 bits (382), Expect = 9e-38 Identities = 106/261 (40%), Positives = 147/261 (56%), Gaps = 12/261 (4%) Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 MR+LF+GD++ + G V LP + + D VIANGEN+A G G+ + + + E G+ Sbjct: 1 MRVLFIGDVMAEPGLRAVGLHLPDIRD--RYDLVIANGENAARGKGLDRRSYRLLREAGV 58 Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRV 120 D+++ GNH WD +E + +RP NYPP TPG G G ++L +MGR+ Sbjct: 59 DLVSLGNHAWDHKEVYALLESE-PVVRPLNYPPGTPGKGFW-RLEVGGESLLFVQVMGRI 116 Query: 121 FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180 FM+PL DDPFR D++L +AD ++ + HAE TSEK AH++D RAS V+GTHT Sbjct: 117 FMDPL-DDPFRALDRLLEEE----KADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHT 171 Query: 181 HIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240 H+PT DA L GT Y TD+GM G Y+S IG + E + RF+T P+ F A G A Sbjct: 172 HVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQ-PFRAAQGKARFH 230 Query: 241 GICAEISDVTGLAEKIAPIRI 261 G I+P Sbjct: 231 ATELVFE--GGRPVAISPYVW 249 >1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} (A:) Length = 255 Score = 147 bits (372), Expect = 1e-36 Identities = 96/262 (36%), Positives = 131/262 (50%), Gaps = 11/262 (4%) Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 MR+LF+GD+ G+ GR ++ LP + Q DFVI N ENSAGGFG+ +E G Sbjct: 1 MRVLFIGDVFGQPGRRVLQNHLPTIRP--QFDFVIVNMENSAGGFGMHRDAARGALEAGA 58 Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPAN-YPPNTPGNGSGLYCAKNGSNVLVANIMGR 119 +T GNH W ++ + Y NG + V N++GR Sbjct: 59 GCLTLGNHAWHHKDIYPMLSEDTYPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGR 118 Query: 120 VFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTH 179 VFM + D+PFRT D ++ + DFHAE TSEK+ + R + V+GTH Sbjct: 119 VFMEAV-DNPFRTMDA----LLERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH 173 Query: 180 THIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATL 239 TH+PTAD +IL GGT Y TD G G ++S IG E P+ RF+T+ P R+ +A G A L Sbjct: 174 THVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERPH-RYGVAEGRAEL 232 Query: 240 CGICAEISDVTGLAEKIAPIRI 261 G+ G A R Sbjct: 233 NGVALHFE--GGKATAAERYRF 252 >1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} (A:) Length = 228 Score = 33.1 bits (74), Expect = 0.036 Identities = 23/221 (10%), Positives = 43/221 (19%), Gaps = 21/221 (9%) Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITE--KIFCEMMET 58 +L + G + + + +L D D + G + F + E Sbjct: 6 RYILATSNPXG--DLEALEKFV-KLAPDTGADAIALIGNLXPKAAKSRDYAAFFRILSEA 62 Query: 59 GIDVITT-GNH-VWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANI 116 + G + N A G + Sbjct: 63 HLPTAYVPGPQDAPIWEYLREAANVELVHPEXRNVHETFTFWRGPYLVAGVGGEIA---D 119 Query: 117 MGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCF------AHFVDS 170 G + L P A+ L + I Sbjct: 120 EGEPEEHEALRYPAWVAEYRLKALWELKDYPKIFLFHTXPYHKGLNEQGSHEVAHLIKTH 179 Query: 171 RASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIG 211 LV+ G + + G + S+ Sbjct: 180 NPLLVLVAGKGQK----HEXLGASWVV-VPGDLSEGEYSLL 215 >2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} (A:76-155) Length = 80 Score = 26.6 bits (59), Expect = 4.0 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%) Query: 85 FLRPANYPPNTPGNGSGLYCAKNG--SNVLVANIMGRVFMNPLLDDP 129 F+ P + P T G G++ + + VA + F N D Sbjct: 11 FIAPVDTKPQTGGGYLGVFNSAEYDKTTQTVA-VEFDTFYNAAWDPS 56 >2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} (G:) Length = 286 Score = 26.2 bits (57), Expect = 4.6 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 3/20 (15%) Query: 194 TGYI---TDLGMCGDYNSSI 210 TGY+ +D G+ G YN++I Sbjct: 76 TGYMVITSDRGLAGPYNANI 95 >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} (A:1-185) Length = 185 Score = 26.0 bits (56), Expect = 5.4 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 3/80 (3%) Query: 193 GTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGL 252 G G D G ++ D + P V N T G +E++ L Sbjct: 100 GGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVN---TTAGTASEVTRHCVL 156 Query: 253 AEKIAPIRIGPRLSETRPDF 272 ++ P Sbjct: 157 TNTETKVKFVIVSWRNLPSV 176 >1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} (G:) Length = 230 Score = 25.8 bits (56), Expect = 6.2 Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 197 ITDLGMCGDYNSSI 210 TD G+CG N ++ Sbjct: 64 STDRGLCGGLNINL 77 >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} (A:) Length = 174 Score = 25.6 bits (55), Expect = 6.4 Identities = 5/50 (10%), Positives = 12/50 (24%) Query: 103 YCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFD 152 + ++ R ++ I + DV + D Sbjct: 105 LVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLD 154 >3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure initiative, PSI-2; 1.90A {Candida albicans SC5314} (A:1-326) Length = 326 Score = 25.7 bits (55), Expect = 6.8 Identities = 28/251 (11%), Positives = 49/251 (19%), Gaps = 51/251 (20%) Query: 2 RLLFLGDIVG-------KTGRSIVYEMLPRLIRDF--QLDFVIANGENSAGG-------- 44 + D G + + + G Sbjct: 17 NFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGL 76 Query: 45 ----FGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP-----PNT 95 K ++ D++T GNH E Q + + + Sbjct: 77 SDITSPNGLKSTPIFIKQDYDLLTIGNHELYLWENSK--QEYETVVNHFQDKYVCSNVDI 134 Query: 96 PGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCP-------------L 142 + I G M F+ + P L Sbjct: 135 RLDNGLFVPLGLKYKYFTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPWFQEAL 194 Query: 143 KEQADVIVFDFHAETTSEKQCFAH-------FVDSRASLVVGTHTHIPTADAQILDGGTG 195 K + D+I+ H + F F G H+HI + Sbjct: 195 KHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRDFTVFD--SLS- 251 Query: 196 YITDLGMCGDY 206 G + Sbjct: 252 TGLQSGRYCET 262 >3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 4.00A {Haemophilus ducreyi} (L:84-238) Length = 155 Score = 25.6 bits (56), Expect = 7.3 Identities = 8/33 (24%), Positives = 17/33 (51%) Query: 20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIF 52 ++ L R ++ + GE ++ F I+E +F Sbjct: 70 KVGGALRRLARIGIITRVGEQNSKKFIISEAVF 102 >3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* (A:1-307) Length = 307 Score = 25.3 bits (54), Expect = 8.7 Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 25/107 (23%) Query: 2 RLLFLGDIVG------------KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGG----- 44 +++ D+ + + L++ Q G Sbjct: 8 TIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVK--QEKAKNKATWFFDAGDYFTG 65 Query: 45 -----FGITEKIFCEMMETGIDVITTGNHVWDK-REALVFSQRHCKF 85 + I D +T GNH +D + + KF Sbjct: 66 PYISSLTKGKAIIDIXNTXPFDAVTIGNHEFDHGWDNTLLQLSQAKF 112 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.141 0.434 Gapped Lambda K H 0.267 0.0430 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,180,228 Number of extensions: 98686 Number of successful extensions: 278 Number of sequences better than 10.0: 1 Number of HSP's gapped: 273 Number of HSP's successfully gapped: 14 Length of query: 274 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 187 Effective length of database: 2,015,014 Effective search space: 376807618 Effective search space used: 376807618 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.3 bits)