RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780659|ref|YP_003065072.1| hypothetical protein
CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62]
(274 letters)
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography,
structural genomics, berkeley structural genomics
center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129}
(A:)
Length = 281
Score = 153 bits (387), Expect = 2e-38
Identities = 88/278 (31%), Positives = 134/278 (48%), Gaps = 10/278 (3%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
++ +FLGD+ GK GR+I+ L +L +Q D VI N EN+ G G++ K + + E G+
Sbjct: 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSG---LYCAKNGSNVLVANIM 117
+ IT GNH W ++ L +RP N + + G L N + + + N++
Sbjct: 65 NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124
Query: 118 GRVFMNPL-LDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176
G P +PF+ +++ D+ + DFHAETTSEK F D + +
Sbjct: 125 GTSVPLPFKTTNPFKVLKELILKRD----CDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180
Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGDY-NSSIGLDKEEPINRFITQIPRNRFVIANG 235
GTHTH+P+AD +I G+ YITD+GMCG S IG + E+ I F F ++
Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239
Query: 236 PATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDFW 273
A L G+ E+ T K IRI +
Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDY 277
>2z06_A Putative uncharacterized protein TTHA0625; metal binding
protein, structural genomics, NPPSFA; 2.20A {Thermus
thermophilus HB8} (A:)
Length = 252
Score = 151 bits (382), Expect = 9e-38
Identities = 106/261 (40%), Positives = 147/261 (56%), Gaps = 12/261 (4%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
MR+LF+GD++ + G V LP + + D VIANGEN+A G G+ + + + E G+
Sbjct: 1 MRVLFIGDVMAEPGLRAVGLHLPDIRD--RYDLVIANGENAARGKGLDRRSYRLLREAGV 58
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRV 120
D+++ GNH WD +E + +RP NYPP TPG G G ++L +MGR+
Sbjct: 59 DLVSLGNHAWDHKEVYALLESE-PVVRPLNYPPGTPGKGFW-RLEVGGESLLFVQVMGRI 116
Query: 121 FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180
FM+PL DDPFR D++L +AD ++ + HAE TSEK AH++D RAS V+GTHT
Sbjct: 117 FMDPL-DDPFRALDRLLEEE----KADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHT 171
Query: 181 HIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240
H+PT DA L GT Y TD+GM G Y+S IG + E + RF+T P+ F A G A
Sbjct: 172 HVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQ-PFRAAQGKARFH 230
Query: 241 GICAEISDVTGLAEKIAPIRI 261
G I+P
Sbjct: 231 ATELVFE--GGRPVAISPYVW 249
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural
genomics, berkeley structural genomics center, BSGC,
PSI; 2.30A {Deinococcus radiodurans R1} (A:)
Length = 255
Score = 147 bits (372), Expect = 1e-36
Identities = 96/262 (36%), Positives = 131/262 (50%), Gaps = 11/262 (4%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
MR+LF+GD+ G+ GR ++ LP + Q DFVI N ENSAGGFG+ +E G
Sbjct: 1 MRVLFIGDVFGQPGRRVLQNHLPTIRP--QFDFVIVNMENSAGGFGMHRDAARGALEAGA 58
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPAN-YPPNTPGNGSGLYCAKNGSNVLVANIMGR 119
+T GNH W ++ + Y NG + V N++GR
Sbjct: 59 GCLTLGNHAWHHKDIYPMLSEDTYPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGR 118
Query: 120 VFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTH 179
VFM + D+PFRT D ++ + DFHAE TSEK+ + R + V+GTH
Sbjct: 119 VFMEAV-DNPFRTMDA----LLERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH 173
Query: 180 THIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATL 239
TH+PTAD +IL GGT Y TD G G ++S IG E P+ RF+T+ P R+ +A G A L
Sbjct: 174 THVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERPH-RYGVAEGRAEL 232
Query: 240 CGICAEISDVTGLAEKIAPIRI 261
G+ G A R
Sbjct: 233 NGVALHFE--GGKATAAERYRF 252
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} (A:)
Length = 228
Score = 33.1 bits (74), Expect = 0.036
Identities = 23/221 (10%), Positives = 43/221 (19%), Gaps = 21/221 (9%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITE--KIFCEMMET 58
+L + G + + + +L D D + G + F + E
Sbjct: 6 RYILATSNPXG--DLEALEKFV-KLAPDTGADAIALIGNLXPKAAKSRDYAAFFRILSEA 62
Query: 59 GIDVITT-GNH-VWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANI 116
+ G + N A G +
Sbjct: 63 HLPTAYVPGPQDAPIWEYLREAANVELVHPEXRNVHETFTFWRGPYLVAGVGGEIA---D 119
Query: 117 MGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCF------AHFVDS 170
G + L P A+ L + I
Sbjct: 120 EGEPEEHEALRYPAWVAEYRLKALWELKDYPKIFLFHTXPYHKGLNEQGSHEVAHLIKTH 179
Query: 171 RASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIG 211
LV+ G + + G + S+
Sbjct: 180 NPLLVLVAGKGQK----HEXLGASWVV-VPGDLSEGEYSLL 215
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} (A:76-155)
Length = 80
Score = 26.6 bits (59), Expect = 4.0
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 85 FLRPANYPPNTPGNGSGLYCAKNG--SNVLVANIMGRVFMNPLLDDP 129
F+ P + P T G G++ + + VA + F N D
Sbjct: 11 FIAPVDTKPQTGGGYLGVFNSAEYDKTTQTVA-VEFDTFYNAAWDPS 56
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis,
F1-ATPase, single particle analysis, thermoalkaliphilic,
hydrolase; 3.06A {Bacillus SP} (G:)
Length = 286
Score = 26.2 bits (57), Expect = 4.6
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
Query: 194 TGYI---TDLGMCGDYNSSI 210
TGY+ +D G+ G YN++I
Sbjct: 76 TGYMVITSDRGLAGPYNANI 95
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens,
decamer, structural genomics, structural proteomics in
europe, spine; 2.70A {Klebsiella pneumoniae} (A:1-185)
Length = 185
Score = 26.0 bits (56), Expect = 5.4
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 3/80 (3%)
Query: 193 GTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLCGICAEISDVTGL 252
G G D G ++ D + P V N T G +E++ L
Sbjct: 100 GGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVN---TTAGTASEVTRHCVL 156
Query: 253 AEKIAPIRIGPRLSETRPDF 272
++ P
Sbjct: 157 TNTETKVKFVIVSWRNLPSV 176
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase;
2.10A {Escherichia coli} (G:)
Length = 230
Score = 25.8 bits (56), Expect = 6.2
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 197 ITDLGMCGDYNSSI 210
TD G+CG N ++
Sbjct: 64 STDRGLCGGLNINL 77
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B;
mixed alpha-beta fold, elongated beta-sheet, walker A
motif, P-loop structural motif; 1.90A {Escherichia coli}
(A:)
Length = 174
Score = 25.6 bits (55), Expect = 6.4
Identities = 5/50 (10%), Positives = 12/50 (24%)
Query: 103 YCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFD 152
+ ++ R ++ I + DV + D
Sbjct: 105 LVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLD 154
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein
structure initiative, PSI-2; 1.90A {Candida albicans
SC5314} (A:1-326)
Length = 326
Score = 25.7 bits (55), Expect = 6.8
Identities = 28/251 (11%), Positives = 49/251 (19%), Gaps = 51/251 (20%)
Query: 2 RLLFLGDIVG-------KTGRSIVYEMLPRLIRDF--QLDFVIANGENSAGG-------- 44
+ D G + + + G
Sbjct: 17 NFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGL 76
Query: 45 ----FGITEKIFCEMMETGIDVITTGNHVWDKREALVFSQRHCKFLRPANYP-----PNT 95
K ++ D++T GNH E Q + + +
Sbjct: 77 SDITSPNGLKSTPIFIKQDYDLLTIGNHELYLWENSK--QEYETVVNHFQDKYVCSNVDI 134
Query: 96 PGNGSGLYCAKNGSNVLVANIMGRVFMNPLLDDPFRTADKILATCP-------------L 142
+ I G M F+ + P L
Sbjct: 135 RLDNGLFVPLGLKYKYFTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPWFQEAL 194
Query: 143 KEQADVIVFDFHAETTSEKQCFAH-------FVDSRASLVVGTHTHIPTADAQILDGGTG 195
K + D+I+ H + F F G H+HI +
Sbjct: 195 KHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIRDFTVFD--SLS- 251
Query: 196 YITDLGMCGDY 206
G +
Sbjct: 252 TGLQSGRYCET 262
>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome
condensation, condensin, SMC, non-SMC subunit, ABC-type
ATPase, WHD, ATP; HET: ATG; 4.00A {Haemophilus ducreyi}
(L:84-238)
Length = 155
Score = 25.6 bits (56), Expect = 7.3
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 20 EMLPRLIRDFQLDFVIANGENSAGGFGITEKIF 52
++ L R ++ + GE ++ F I+E +F
Sbjct: 70 KVGGALRRLARIGIITRVGEQNSKKFIISEAVF 102
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A* (A:1-307)
Length = 307
Score = 25.3 bits (54), Expect = 8.7
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 25/107 (23%)
Query: 2 RLLFLGDIVG------------KTGRSIVYEMLPRLIRDFQLDFVIANGENSAGG----- 44
+++ D+ + + L++ Q G
Sbjct: 8 TIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVK--QEKAKNKATWFFDAGDYFTG 65
Query: 45 -----FGITEKIFCEMMETGIDVITTGNHVWDK-REALVFSQRHCKF 85
+ I D +T GNH +D + + KF
Sbjct: 66 PYISSLTKGKAIIDIXNTXPFDAVTIGNHEFDHGWDNTLLQLSQAKF 112
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.141 0.434
Gapped
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,180,228
Number of extensions: 98686
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 14
Length of query: 274
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 187
Effective length of database: 2,015,014
Effective search space: 376807618
Effective search space used: 376807618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)