Query gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 244
No_of_seqs 153 out of 2227
Neff 6.6
Searched_HMMs 33803
Date Wed Jun 1 15:28:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780660.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1lfp_A Hypothetical protein A 100.0 6.1E-28 1.8E-32 220.5 10.2 91 78-244 1-91 (95)
2 >1lfp_A Hypothetical protein A 99.9 2.8E-28 8.3E-33 222.9 5.6 77 1-77 1-77 (78)
3 >1kon_A Protein YEBC, YEBC; al 99.9 1.3E-28 3.8E-33 225.2 3.8 76 1-76 4-79 (79)
4 >1kon_A Protein YEBC, YEBC; al 99.9 1.1E-27 3.4E-32 218.5 6.5 91 77-244 2-92 (95)
5 >1mw7_A Hypothetical protein H 99.9 9.9E-26 2.9E-30 204.7 9.4 84 77-238 1-84 (84)
6 >1mw7_A Hypothetical protein H 99.9 2.5E-24 7.4E-29 194.7 6.4 71 5-75 3-73 (73)
7 >1lfp_A Hypothetical protein A 99.6 1.7E-16 5.1E-21 138.7 5.2 76 129-204 1-76 (76)
8 >1mw7_A Hypothetical protein H 99.6 3E-16 8.9E-21 137.0 3.8 78 129-206 1-83 (83)
9 >1kon_A Protein YEBC, YEBC; al 99.6 2.6E-15 7.6E-20 130.3 5.0 74 129-204 1-75 (75)
10 >2jhe_A Transcription regulato 66.0 5.1 0.00015 21.1 2.8 57 175-234 10-68 (73)
11 >2jsx_A Protein NAPD; TAT, pro 57.3 15 0.00044 17.8 4.7 70 169-243 9-85 (95)
12 >2ko1_A CTR148A, GTP pyrophosp 52.1 18 0.00052 17.2 5.3 65 174-241 14-83 (88)
13 >1vi7_A Hypothetical protein Y 50.5 13 0.00037 18.3 2.6 52 169-221 3-54 (79)
14 >2dgb_A Hypothetical protein P 48.7 20 0.00059 16.9 4.6 52 180-231 22-73 (84)
15 >2pc6_A Probable acetolactate 48.4 20 0.00059 16.8 4.5 57 175-234 14-76 (80)
16 >2f1f_A Acetolactate synthase 38.3 28 0.00083 15.8 4.2 57 175-234 13-75 (79)
17 >1iv3_A 2-C-methyl-D-erythrito 34.8 30 0.00088 15.6 2.5 32 175-206 73-104 (152)
18 >2kdo_A Ribosome maturation pr 33.2 34 0.001 15.2 5.3 53 164-216 23-75 (104)
19 >2fgc_A Acetolactate synthase, 32.9 27 0.00079 16.0 2.1 60 172-234 36-101 (106)
20 >2w0c_P Protein P3, protein II 31.6 14 0.0004 18.1 0.4 19 2-20 25-43 (104)
21 >2cyy_A Putative HTH-type tran 30.0 38 0.0011 14.9 2.9 67 170-239 14-82 (94)
22 >2nu8_B SCS-beta, succinyl-COA 29.7 23 0.00068 16.4 1.3 30 204-233 48-77 (151)
23 >2e1c_A Putative HTH-type tran 26.9 43 0.0013 14.5 2.7 68 169-239 13-82 (94)
24 >2zbc_A 83AA long hypothetical 26.3 44 0.0013 14.4 3.3 67 170-240 6-76 (83)
25 >1h45_A Lactoferrin; metal tra 26.1 35 0.001 15.1 1.7 55 79-135 73-130 (172)
26 >2fp4_B Succinyl-COA ligase [G 25.4 31 0.00091 15.5 1.3 13 112-124 36-48 (152)
27 >1sc6_A PGDH, D-3-phosphoglyce 24.9 46 0.0014 14.2 3.5 57 174-234 19-80 (83)
28 >1t95_A Hypothetical protein A 24.2 41 0.0012 14.6 1.7 52 165-216 20-71 (94)
29 >2qen_A Walker-type ATPase; un 23.8 28 0.00084 15.8 0.9 36 2-60 12-47 (69)
30 >1o5h_A Formiminotetrahydrofol 23.7 41 0.0012 14.6 1.7 20 57-76 69-88 (182)
31 >1vk8_A Hypothetical protein T 23.5 18 0.00053 17.2 -0.2 51 182-241 38-91 (106)
32 >1gh8_A Translation elongation 22.7 32 0.00096 15.4 1.0 27 205-233 54-80 (89)
33 >3hno_A Pyrophosphate-dependen 22.6 49 0.0015 14.1 1.9 26 37-62 10-35 (211)
34 >1lxn_A Hypothetical protein M 22.4 37 0.0011 15.0 1.2 45 194-241 30-80 (99)
35 >2wbm_A MTHSBDS, ribosome matu 21.9 45 0.0013 14.3 1.6 53 164-216 33-86 (109)
No 1
>>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} (A:79-129,A:206-249)
Probab=99.95 E-value=6.1e-28 Score=220.45 Aligned_cols=91 Identities=43% Similarity=0.737 Sum_probs=84.6
Q ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHHHC
Q ss_conf 66640236786505993999999446302358998987642568314788604568644727970677530136677512
Q gi|254780660|r 78 LGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIE 157 (244)
Q Consensus 78 ~~~~~~~~yEg~gP~gvaiiVe~lTDN~nRt~~~vr~~f~K~gG~lg~~Gsv~~~F~~~G~i~~~~~~~d~d~~~e~aie 157 (244)
+.+|++++|||||||||++||||||||+|||+++||++|+|+||+||++||.
T Consensus 1 g~~y~ei~YEg~gPgGvaiiVe~lTDN~nRT~~~vR~~f~K~gG~l~~~Gst---------------------------- 52 (95)
T 1lfp_A 1 GEQFEEVIYEGYAPGGVAVXVLATTDNRNRTTSEVRHVFTKHGGNLGASGCT---------------------------- 52 (95)
T ss_dssp SCCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSC----------------------------
T ss_pred CCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEECCCCCC----------------------------
T ss_conf 6661799999987888589999927877779999999987249726788734----------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 68752234688259996432013456654202567422217860376102489899999999998752388813110256
Q gi|254780660|r 158 SDAFEVLFEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNL 237 (244)
Q Consensus 158 ~ga~Dv~~~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~~~klie~Led~DDVq~VytN~ 237 (244)
++++ ++|+++++++|+|+|||+||||+||||+
T Consensus 53 -----------------------------------------------~v~~-~~e~~~k~~klid~Led~DDVQ~Vy~N~ 84 (95)
T 1lfp_A 53 -----------------------------------------------VQIN-DEETAQKVIKLLNALEELDDVQQVIANF 84 (95)
T ss_dssp -----------------------------------------------EECC-CHHHHHHHHHHHHHHHTSTTEEEEEECE
T ss_pred -----------------------------------------------EECC-CHHHHHHHHHHHHHHHCCCCCCCEEECC
T ss_conf -----------------------------------------------3158-8999999999999874531701264778
Q ss_pred CCCCCCC
Q ss_conf 2662439
Q gi|254780660|r 238 EIADDII 244 (244)
Q Consensus 238 ~i~eeil 244 (244)
+++|++|
T Consensus 85 e~~de~~ 91 (95)
T 1lfp_A 85 EIPEEIL 91 (95)
T ss_dssp ECCSCCS
T ss_pred CCCHHHH
T ss_conf 6599999
No 2
>>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} (A:1-78)
Probab=99.95 E-value=2.8e-28 Score=222.86 Aligned_cols=77 Identities=53% Similarity=0.771 Sum_probs=74.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 97741126556467755788897999999999999981899941489999999999966888789999998503776
Q gi|254780660|r 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGSDD 77 (244)
Q Consensus 1 maGHsKW~nIkh~K~~~D~~k~k~f~k~~keI~~A~k~gG~dp~~N~~L~~ai~~Ak~~~mPk~~Ie~aIkk~~~~~ 77 (244)
.||||||+||||+|+++|++||++|+||+|+|++|+|+|||||+.|++|+++|++||++|||+++|||||+||.|.+
T Consensus 1 ~aGHsKW~nikh~K~~~D~~ksk~~~kl~keI~~A~k~GG~DP~~N~~L~~ai~~Ak~~nvPkd~IerAIkka~g~~ 77 (78)
T 1lfp_A 1 XAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANXPWENIERAIKKGAGEL 77 (78)
T ss_dssp ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 99652656666788898999999999999999999972899976099999999999882899889999999604566
No 3
>>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} (A:1-79)
Probab=99.95 E-value=1.3e-28 Score=225.24 Aligned_cols=76 Identities=43% Similarity=0.714 Sum_probs=74.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 9774112655646775578889799999999999998189994148999999999996688878999999850377
Q gi|254780660|r 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGSD 76 (244)
Q Consensus 1 maGHsKW~nIkh~K~~~D~~k~k~f~k~~keI~~A~k~gG~dp~~N~~L~~ai~~Ak~~~mPk~~Ie~aIkk~~~~ 76 (244)
|||||||+||||+|+++|++||++|+||+|+|++|||+|||||+.|++||++|++||++|||+++|||||+||+|.
T Consensus 4 maGhskW~nikh~K~~~D~~k~k~~~k~~k~I~~A~k~GG~dP~~N~~L~~~i~~Ak~~nvPkd~IerAIkka~G~ 79 (79)
T 1kon_A 4 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGG 79 (79)
T ss_dssp --CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 8726676775578889889999999999999999998089997619999999999998199879999999954587
No 4
>>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} (A:80-132,A:208-249)
Probab=99.94 E-value=1.1e-27 Score=218.52 Aligned_cols=91 Identities=48% Similarity=0.822 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHHH
Q ss_conf 66664023678650599399999944630235899898764256831478860456864472797067753013667751
Q gi|254780660|r 77 DLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAI 156 (244)
Q Consensus 77 ~~~~~~~~~yEg~gP~gvaiiVe~lTDN~nRt~~~vr~~f~K~gG~lg~~Gsv~~~F~~~G~i~~~~~~~d~d~~~e~ai 156 (244)
+..+|++++|||||||||++||||||||+|||+++||++|+|+||+||++||.
T Consensus 2 d~~~~~ei~YEg~gP~GvaiiVe~lTDN~nRT~~~iR~~f~K~gG~lg~~Gs~--------------------------- 54 (95)
T 1kon_A 2 DDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSK--------------------------- 54 (95)
T ss_dssp --CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSC---------------------------
T ss_pred CCCCEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCC---------------------------
T ss_conf 77766999999996898489999916987779999998998669974787625---------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26875223468825999643201345665420256742221786037610248989999999999875238881311025
Q gi|254780660|r 157 ESDAFEVLFEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSN 236 (244)
Q Consensus 157 e~ga~Dv~~~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~~~klie~Led~DDVq~VytN 236 (244)
++++ +|+++++++||++|||+||||+||||
T Consensus 55 -------------------------------------------------~~~~-~e~a~k~~~lid~Led~DDVQ~Vy~N 84 (95)
T 1kon_A 55 -------------------------------------------------ADMD-AETAPKLMRLIDMLEDCDDVQEVYHN 84 (95)
T ss_dssp -------------------------------------------------CCCC-TTTSHHHHHHHHHHHHSSSEEEEEEC
T ss_pred -------------------------------------------------CCCC-HHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf -------------------------------------------------2339-99999999999987443472528788
Q ss_pred CCCCCCCC
Q ss_conf 62662439
Q gi|254780660|r 237 LEIADDII 244 (244)
Q Consensus 237 ~~i~eeil 244 (244)
++|+|+++
T Consensus 85 ~e~~~~~~ 92 (95)
T 1kon_A 85 GEISDEVA 92 (95)
T ss_dssp CCCCHHHH
T ss_pred CCCCHHHH
T ss_conf 85199998
No 5
>>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} (A:74-126,A:210-240)
Probab=99.93 E-value=9.9e-26 Score=204.66 Aligned_cols=84 Identities=37% Similarity=0.637 Sum_probs=78.0
Q ss_pred CCCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHHH
Q ss_conf 66664023678650599399999944630235899898764256831478860456864472797067753013667751
Q gi|254780660|r 77 DLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAI 156 (244)
Q Consensus 77 ~~~~~~~~~yEg~gP~gvaiiVe~lTDN~nRt~~~vr~~f~K~gG~lg~~Gsv~~~F~~~G~i~~~~~~~d~d~~~e~ai 156 (244)
++.+|++++|||||||||++||||||||+|||+++||++|+|+||+||++|||
T Consensus 1 eg~~~~ei~YEg~gpgGvaiiVe~lTDN~nRT~~~vr~~f~K~gG~lg~~GsV--------------------------- 53 (84)
T 1mw7_A 1 KEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGS--------------------------- 53 (84)
T ss_dssp TTCCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTT---------------------------
T ss_pred CCCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC---------------------------
T ss_conf 77880899999987997599999917977679999999998638853356884---------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26875223468825999643201345665420256742221786037610248989999999999875238881311025
Q gi|254780660|r 157 ESDAFEVLFEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSN 236 (244)
Q Consensus 157 e~ga~Dv~~~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~~~klie~Led~DDVq~VytN 236 (244)
+++ +|+++++++||++|||+||||+||||
T Consensus 54 --------------------------------------------------~~~-~e~~~~~~~lid~led~dDVQ~VyhN 82 (84)
T 1mw7_A 54 --------------------------------------------------ELN-DEQMELTEKLLDRIEDDDDVVALYTN 82 (84)
T ss_dssp --------------------------------------------------CCC-HHHHHHHHHHHHHHHTSTTEEEEEES
T ss_pred --------------------------------------------------ECC-HHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf --------------------------------------------------329-99999999999987553572606017
Q ss_pred CC
Q ss_conf 62
Q gi|254780660|r 237 LE 238 (244)
Q Consensus 237 ~~ 238 (244)
++
T Consensus 83 ~e 84 (84)
T 1mw7_A 83 IE 84 (84)
T ss_dssp BC
T ss_pred CC
T ss_conf 89
No 6
>>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} (A:1-73)
Probab=99.90 E-value=2.5e-24 Score=194.66 Aligned_cols=71 Identities=46% Similarity=0.612 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 11265564677557888979999999999999818999414899999999999668887899999985037
Q gi|254780660|r 5 SQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGS 75 (244)
Q Consensus 5 sKW~nIkh~K~~~D~~k~k~f~k~~keI~~A~k~gG~dp~~N~~L~~ai~~Ak~~~mPk~~Ie~aIkk~~~ 75 (244)
-||+||||+|+++|++||++|+||+|+|++|||+|||||+.|++||++|++||++|||+|+||+||+||.|
T Consensus 3 rkW~nikh~K~~~D~~ksk~~~k~~reI~~A~k~GG~DP~~N~~L~~ai~~Ak~~~vPkd~Ie~AIkka~G 73 (73)
T 1mw7_A 3 RAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASS 73 (73)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 14888987764307888899999999999999718999772999999999999809998999999974065
No 7
>>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} (A:130-205)
Probab=99.64 E-value=1.7e-16 Score=138.66 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=74.5
Q ss_pred CHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 0456864472797067753013667751268752234688259996432013456654202567422217860376
Q gi|254780660|r 129 TTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLN 204 (244)
Q Consensus 129 v~~~F~~~G~i~~~~~~~d~d~~~e~aie~ga~Dv~~~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~ 204 (244)
|+|||+|+|+|.++++..++|.+++.+||+||+|++.+++.++|+|+|++|.+|+++|+++|+++.+++++|+|+|
T Consensus 1 Vs~~F~~kG~i~~~~~~~ded~l~e~aieaGaeDv~~~d~~~~v~~~~~~~~~v~~aL~~~g~~~~~ael~~iP~n 76 (76)
T 1lfp_A 1 VSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPIS 76 (76)
T ss_dssp SGGGEEEEEEEEEEGGGSCHHHHHHHHHHHTCSEEECCSSEEEEEECGGGHHHHHHHHHTTTCCCSEEEEEEEESS
T ss_pred HHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCEEEEEECHHHHHHHHHHHHHCCCCEEECCEEEEECC
T ss_conf 6553033058997468664577899886169620025674189993288899999999865875140301685078
No 8
>>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} (A:127-209)
Probab=99.61 E-value=3e-16 Score=136.96 Aligned_cols=78 Identities=13% Similarity=-0.029 Sum_probs=74.1
Q ss_pred CHHHHHHCCEEEECCC-----CCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 0456864472797067-----75301366775126875223468825999643201345665420256742221786037
Q gi|254780660|r 129 TTRFFEQIGEIIYHSN-----IGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPL 203 (244)
Q Consensus 129 v~~~F~~~G~i~~~~~-----~~d~d~~~e~aie~ga~Dv~~~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~ 203 (244)
|+|||+|||+|.++++ ..++|.+++.+||+||+|++.+++.++|+|+|++|++|+++|+++|+++.+++|+|+|+
T Consensus 1 Vs~~F~~kG~i~i~~~~~~~~~~~ed~l~e~aie~GaeDve~~d~~~~i~t~~~~~~~v~~~L~~~g~~i~~~ei~~iP~ 80 (83)
T 1mw7_A 1 LEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKLPILKASLQRIAT 80 (83)
T ss_dssp TTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEEEEEETTEEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEES
T ss_pred EEEEEEEEEEEEECCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 46888974799976774002214777788786505731012368841896243668999999986477600237899428
Q ss_pred CCE
Q ss_conf 610
Q gi|254780660|r 204 NYI 206 (244)
Q Consensus 204 ~~V 206 (244)
++|
T Consensus 81 ~~V 83 (83)
T 1mw7_A 81 TPI 83 (83)
T ss_dssp SCB
T ss_pred CCE
T ss_conf 835
No 9
>>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} (A:133-207)
Probab=99.56 E-value=2.6e-15 Score=130.30 Aligned_cols=74 Identities=26% Similarity=0.352 Sum_probs=69.6
Q ss_pred CHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCCCCCC-CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 0456864472797067753013667751268752234-688259996432013456654202567422217860376
Q gi|254780660|r 129 TTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLF-EDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLN 204 (244)
Q Consensus 129 v~~~F~~~G~i~~~~~~~d~d~~~e~aie~ga~Dv~~-~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~ 204 (244)
|+|||+|+|+|.+++. ++|.+++.+||+||+|++. +++.++|+|+|++|++|+++|+++|+++.+++++|+|+|
T Consensus 1 Vs~~F~~kG~i~~~~~--~ed~~~e~aieaGaeDv~~~ed~~~~i~t~~~~~~~v~~~L~~~g~~~~~~ei~~iP~n 75 (75)
T 1kon_A 1 VAYLFSKKGVISFEKG--DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPST 75 (75)
T ss_dssp SGGGEEEEEEEEESSS--CHHHHHHHHHHHTCSEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESS
T ss_pred EEEEEEEEEEEEECCC--CHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEECC
T ss_conf 0401023235743789--97899999998495433023678439993422499999999866887056689997588
No 10
>>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.3A {Escherichia coli} (A:1-73)
Probab=66.00 E-value=5.1 Score=21.11 Aligned_cols=57 Identities=11% Similarity=-0.026 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCCCC--EECCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4320134566542025674222178603761--02489899999999998752388813110
Q gi|254780660|r 175 DFNNVGLTSKKLEEKIGEAQSIKVIWKPLNY--IRLSNADKVKSIIKMIENLEDDDDVQSVY 234 (244)
Q Consensus 175 ~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~--V~l~d~e~~~~~~klie~Led~DDVq~Vy 234 (244)
.+--+..+...+.+.+..+.+.+..-....+ +++.+ .+.+.+++.+|...++|+.|+
T Consensus 10 r~GlL~dI~~vis~~~~nI~~~~~~~~~~i~l~iev~~---~~~L~~ii~~L~~i~gV~~V~ 68 (73)
T 2jhe_A 10 RLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELE---FESFSSLMAEIRRIAGVTDVR 68 (73)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEEEETTTEEEEEECCCC---HHHHHHHHHHHHHSTTEEEEE
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEECCCEEEEECCCCC---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 15449999999986695499999724641999334446---578999999999875065665
No 11
>>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A (A:)
Probab=57.29 E-value=15 Score=17.80 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=48.7
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEC--CC--CCEECCCHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCC
Q ss_conf 259996432013456654202567422217860--37--61024898999999999987523888131---102562662
Q gi|254780660|r 169 EYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWK--PL--NYIRLSNADKVKSIIKMIENLEDDDDVQS---VYSNLEIAD 241 (244)
Q Consensus 169 ~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~--P~--~~V~l~d~e~~~~~~klie~Led~DDVq~---VytN~~i~e 241 (244)
.+.|.|.|+.+..|+..|.+. ..+++-.. |. --|.+..+ ....+.+.++.|+.++.|-+ ||+.++-.+
T Consensus 9 s~vV~~~Pe~~~~V~~~l~~~----~g~Eih~~~~~~GKlVVtiE~~-~~~~~~~~i~~I~~l~GVlsa~lvY~~~e~~~ 83 (95)
T 2jsx_A 9 SLVVQAKSERISDISTQLNAF----PGCEVAVSDAPSGQLIVVVEAE-DSETLIQTIESVRNVEGVLAVSLVYHQQEEQG 83 (95)
T ss_dssp EEEEEECTTSHHHHHHHHTTS----TTEEEEEEETTTTEEEEEEEES-SHHHHHHHHHHHTTSTTEEEEEESSCCCCCCC
T ss_pred EEEEEECHHHHHHHHHHHHCC----CCCEEEEECCCCCEEEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
T ss_conf 899996888899999999748----9978963038896099999709-85899999999876998328976488715664
Q ss_pred CC
Q ss_conf 43
Q gi|254780660|r 242 DI 243 (244)
Q Consensus 242 ei 243 (244)
++
T Consensus 84 e~ 85 (95)
T 2jsx_A 84 EE 85 (95)
T ss_dssp CS
T ss_pred CC
T ss_conf 43
No 12
>>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A (A:)
Probab=52.11 E-value=18 Score=17.23 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=46.7
Q ss_pred ECCCCHHHHHHHHHHCCCCCCCCEEEECCC-----CCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 643201345665420256742221786037-----61024898999999999987523888131102562662
Q gi|254780660|r 174 CDFNNVGLTSKKLEEKIGEAQSIKVIWKPL-----NYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEIAD 241 (244)
Q Consensus 174 ~~~~~~~~v~~~Le~~~~~~~~sei~~~P~-----~~V~l~d~e~~~~~~klie~Led~DDVq~VytN~~i~e 241 (244)
=.|--+..+...|.+.+..+.+....-... -.+++.+. +.+..++..|+..++|..|+---.++.
T Consensus 14 DrpGlL~~It~~la~~~inI~~i~~~~~~~~~~~~~~v~v~d~---~~l~~ii~~l~~i~~V~~V~r~~~~~~ 83 (88)
T 2ko1_A 14 DKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT---DKLTTLMDKLRKVQGVFTVERLSNLEH 83 (88)
T ss_dssp CCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH---HHHHHHHHHHTTCTTEEEEEEECSCCC
T ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEEEECCH---HHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 6878899999999987982999999826998999999999999---999999999977999878999861204
No 13
>>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} (A:139-217)
Probab=50.49 E-value=13 Score=18.30 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=32.9
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHH
Q ss_conf 25999643201345665420256742221786037610248989999999999
Q gi|254780660|r 169 EYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMI 221 (244)
Q Consensus 169 ~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~~~kli 221 (244)
.+.+.|++..+..++..|++.++.+.+.+..-.-.-.+.++. ++.+.+...+
T Consensus 3 ~l~l~~~Y~~~~~i~~~l~~~~~~i~d~~y~~~V~l~i~v~~-~~~~~f~~~l 54 (79)
T 1vi7_A 3 EYTLQCEYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPA-AKVAEFSAKL 54 (79)
T ss_dssp EEEEEECTTTHHHHHHHHHHTTCEEEEEEESSSEEEEEEECS-STHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECH-HHHHHHHHHH
T ss_conf 999998465899999999987999981173784799999979-9999999999
No 14
>>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A (A:)
Probab=48.68 E-value=20 Score=16.87 Aligned_cols=52 Identities=10% Similarity=-0.079 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3456654202567422217860376102489899999999998752388813
Q gi|254780660|r 180 GLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQ 231 (244)
Q Consensus 180 ~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~~~klie~Led~DDVq 231 (244)
.+++.+|...|+.+.+.-+.-.=.-+++-++++.++++..+.+.|--.+=++
T Consensus 22 ~aI~~aL~~lG~~V~~VR~GK~iel~i~~~~~~~a~~v~~~c~klLaNpvIE 73 (84)
T 2dgb_A 22 RAVEGVLKDLGHPVEEVRVGKVLEIVFPAENLLEAEEKAKAXGALLANPVXE 73 (84)
T ss_dssp HHHHHHHHHTTCCCSEEEEEEEEEEEEECSSHHHHHHHHHHHHHHHSCTTTE
T ss_pred HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9999999975997544885669999986899899999999988874997337
No 15
>>2pc6_A Probable acetolactate synthase isozyme III (small subunit); regulatory subunit, structural genomics, PSI; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} (A:1-80)
Probab=48.36 E-value=20 Score=16.83 Aligned_cols=57 Identities=7% Similarity=0.010 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCCCC------EECCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4320134566542025674222178603761------02489899999999998752388813110
Q gi|254780660|r 175 DFNNVGLTSKKLEEKIGEAQSIKVIWKPLNY------IRLSNADKVKSIIKMIENLEDDDDVQSVY 234 (244)
Q Consensus 175 ~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~------V~l~d~e~~~~~~klie~Led~DDVq~Vy 234 (244)
.|--+..+...|...++.+.+....-..... +...+++ .+..++..|+.++||.+|.
T Consensus 14 ~pGvLa~It~ifa~~ginI~si~~~~~~~~~~~~~~i~~~~~e~---~l~~~i~~l~kl~~V~~V~ 76 (80)
T 2pc6_A 14 EAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDE---IVEQITKQLNKLIEVVKLI 76 (80)
T ss_dssp STTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHH---HHHHHHHHHHHSTTEEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCHH---HHHHHHHHHHCCCCEEEEE
T ss_conf 75799999999862575556888603368986899999968788---9999999995575755752
No 16
>>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} (A:1-79)
Probab=38.35 E-value=28 Score=15.78 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCCCC------EECCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4320134566542025674222178603761------02489899999999998752388813110
Q gi|254780660|r 175 DFNNVGLTSKKLEEKIGEAQSIKVIWKPLNY------IRLSNADKVKSIIKMIENLEDDDDVQSVY 234 (244)
Q Consensus 175 ~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~------V~l~d~e~~~~~~klie~Led~DDVq~Vy 234 (244)
.|--|..+...|...++.+.+....-..... +...+. +.+..++..|+..++|.+|+
T Consensus 13 ~pGvLa~It~v~~~~~vNI~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~i~~~l~~i~~V~~V~ 75 (79)
T 2f1f_A 13 ESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE---KVLEQIEKQLHKLVDVLRVS 75 (79)
T ss_dssp CTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH---HHHHHHHHHHHHSTTEEEEE
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCH---HHHHHHHHHHHCCCCCEEEE
T ss_conf 8679999999986067555688860336897689999985698---99999999996174730522
No 17
>>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} (A:)
Probab=34.75 E-value=30 Score=15.62 Aligned_cols=32 Identities=3% Similarity=-0.161 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCCCCE
Q ss_conf 43201345665420256742221786037610
Q gi|254780660|r 175 DFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYI 206 (244)
Q Consensus 175 ~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V 206 (244)
...=+..+.+.+++++|.+.+..++.+++.|-
T Consensus 73 S~~lL~~~~~~~~~~g~~i~niD~tii~~~PK 104 (152)
T 1iv3_A 73 SEVFLREAMRLVEARGAKLLQASLVLTLDRPK 104 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHCCEEEEEEEEEEEECCCC
T ss_conf 49999999999876886999634899943763
No 18
>>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein, acetylation, cytoplasm, disease mutation; NMR {Homo sapiens} (A:1-104)
Probab=33.22 E-value=34 Score=15.23 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=39.0
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHH
Q ss_conf 34688259996432013456654202567422217860376102489899999
Q gi|254780660|r 164 LFEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKS 216 (244)
Q Consensus 164 ~~~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~ 216 (244)
+.....|+|+|+|+.....++.-+...-++..++-+|.--..-+...++.+++
T Consensus 23 k~~~~~FEI~v~p~~~~k~r~g~~~~l~~vl~~~~IF~n~~kG~~As~~~L~~ 75 (104)
T 2kdo_A 23 KRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLIS 75 (104)
T ss_dssp ECSSCEEEEEEESSSGGGGGTTCCSCSSTTCCCCCEEEETTTTEEECHHHHHH
T ss_pred EECCEEEEEEECHHHHHHHHCCCCCCHHHHHHHCEEEECCCCCCCCCHHHHHH
T ss_conf 86898899998877999987699788899842023675277776689999999
No 19
>>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} (A:1-106)
Probab=32.90 E-value=27 Score=15.95 Aligned_cols=60 Identities=13% Similarity=-0.064 Sum_probs=37.0
Q ss_pred EEECCCCHHHHHHHHHHCCCCCCCCEEEECCCC-----CE-ECCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 996432013456654202567422217860376-----10-2489899999999998752388813110
Q gi|254780660|r 172 FYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLN-----YI-RLSNADKVKSIIKMIENLEDDDDVQSVY 234 (244)
Q Consensus 172 i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~-----~V-~l~d~e~~~~~~klie~Led~DDVq~Vy 234 (244)
+.=.|--|..+...|...++.+.+....-.... .+ ...++ ..+.++++.|+.+++|++|.
T Consensus 36 v~d~pGvLa~It~vl~~~gvnI~si~~~~~~~~~~~~~~i~~~~~~---~~l~~~i~~l~kl~~V~~V~ 101 (106)
T 2fgc_A 36 VHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDD---KTIEQIEKQAYKLVEVVKVT 101 (106)
T ss_dssp EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT---THHHHHHHHHTTSTTEEEEE
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCH---HHHHHHHHHHHCCCCEEEEE
T ss_conf 9788789999999986268572578863566787479999997798---99999999985422768766
No 20
>>2w0c_P Protein P3, protein III; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2} (P:)
Probab=31.61 E-value=14 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 7741126556467755788
Q gi|254780660|r 2 AGHSQFKNIMHRKERKDAL 20 (244)
Q Consensus 2 aGHsKW~nIkh~K~~~D~~ 20 (244)
+|-|+|+.|...|+++|..
T Consensus 25 ~~l~~WA~iEQv~A~K~S~ 43 (104)
T 2w0c_P 25 ALISGWARVEQIKAAKAST 43 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 7755678899987776159
No 21
>>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:58-151)
Probab=30.03 E-value=38 Score=14.87 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=44.0
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCC--CCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 5999643201345665420256742221786037--610248989999999999875238881311025626
Q gi|254780660|r 170 YIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPL--NYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEI 239 (244)
Q Consensus 170 ~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~--~~V~l~d~e~~~~~~klie~Led~DDVq~VytN~~i 239 (244)
+.+.+++..+..+.+.|...--...-..+..... -.|...| .+.+..|++.|...+.|.++-|.+-+
T Consensus 14 v~i~~~~~~~~~v~~~l~~~p~V~~~~~~sG~~d~~~~v~~~d---~~~l~~~i~~l~~~~gv~~~~t~ivl 82 (94)
T 2cyy_A 14 ILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDXVVKIRTKN---SEELNNFLDLIGSIPGVEGTHTXIVL 82 (94)
T ss_dssp EEEEECTTCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESS---HHHHHHHHHHHHTSTTEEEEEEEECC
T ss_pred EEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECC---HHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 9850355320033444047863167101578876999999799---99999999998468994089999999
No 22
>>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (B:238-388)
Probab=29.67 E-value=23 Score=16.42 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=10.5
Q ss_pred CCEECCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 610248989999999999875238881311
Q gi|254780660|r 204 NYIRLSNADKVKSIIKMIENLEDDDDVQSV 233 (244)
Q Consensus 204 ~~V~l~d~e~~~~~~klie~Led~DDVq~V 233 (244)
|+|++......+.+.+.++.|.++++|.-|
T Consensus 48 NPvDl~g~~~~~~~~~~l~~~~~d~~vd~i 77 (151)
T 2nu8_B 48 NFLDVGGGATKERVTEAFKIILSDDKVKAV 77 (151)
T ss_dssp EEEECCSCCCHHHHHHHHHHHHTSTTCCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 367625888799999999999759987689
No 23
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:78-171)
Probab=26.90 E-value=43 Score=14.50 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=45.0
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCC--CCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 25999643201345665420256742221786037--610248989999999999875238881311025626
Q gi|254780660|r 169 EYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPL--NYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEI 239 (244)
Q Consensus 169 ~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~--~~V~l~d~e~~~~~~klie~Led~DDVq~VytN~~i 239 (244)
.+.+-+++..+..+.+.|.+.-.-..-..+..... -.+...+. +.+..|++.|...+.|.++-|.+-+
T Consensus 13 ~v~i~v~~~~~~~~~~~l~~~p~V~~~~~~sG~~dl~~~v~~~~~---~~l~~~i~~l~~~~gv~~~~t~~vl 82 (94)
T 2e1c_A 13 FILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNS---EELNNFLDLIGSIPGVEGTHTMIVL 82 (94)
T ss_dssp EEEEEECTTCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSH---HHHHHHHHHHHHSTTEEEEEEEECS
T ss_pred EEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCH---HHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 998504541022334541479747884015788869999997999---9999999998468994089999999
No 24
>>2zbc_A 83AA long hypothetical transcriptional regulator ASNC; SARD; 1.90A {Sulfolobus tokodaii str} (A:)
Probab=26.27 E-value=44 Score=14.42 Aligned_cols=67 Identities=9% Similarity=0.191 Sum_probs=43.2
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCC---CCEECCCHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCC
Q ss_conf 5999643201345665420256742221786037---610248989999999999-8752388813110256266
Q gi|254780660|r 170 YIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPL---NYIRLSNADKVKSIIKMI-ENLEDDDDVQSVYSNLEIA 240 (244)
Q Consensus 170 ~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~---~~V~l~d~e~~~~~~kli-e~Led~DDVq~VytN~~i~ 240 (244)
+.+.|+|..+..+...|.+.- ++.++..+-=+- -.+-..|- +.+..|+ +.|..++.|+++-|.+-+.
T Consensus 6 v~i~~~~~~~~~~~~~l~~~p-eV~~~~~vtG~~D~i~~v~~~d~---~~l~~~i~~~l~~~~gV~~~~T~ivl~ 76 (83)
T 2zbc_A 6 VLINTDAGGEDEVFERLKSXS-EVTEVHVVYGVYDIVVKVEADSX---DKLKDFVTNTIRKLPKVRSTLTXIIVE 76 (83)
T ss_dssp EEEEESTTCHHHHHHHHTTCT-TEEEEEECSSSCSEEEEEECSSH---HHHHHHHHHTGGGSTTEEEEEEEECCT
T ss_pred EEEEECCCCHHHHHHHHHCCC-CEEEEEEEECCCEEEEEEEECCH---HHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_conf 999977899999999997697-72489991087629999999999---999999999872599983699999998
No 25
>>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} (A:1-91,A:254-334)
Probab=26.07 E-value=35 Score=15.13 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=28.2
Q ss_pred CCCCEEEEEEECCCCEEEE--EEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHH
Q ss_conf 6640236786505993999--9994463023589989876425683147886045-6864
Q gi|254780660|r 79 GNYTNIRYEGYGPEGVAII--IEALTDNRNRTASSIRSIFTKANGSLGSTGSTTR-FFEQ 135 (244)
Q Consensus 79 ~~~~~~~yEg~gP~gvaii--Ve~lTDN~nRt~~~vr~~f~K~gG~lg~~Gsv~~-~F~~ 135 (244)
-++..|.||-||+.+-+.. |-+..+.-. ...|..++++.--.+|..+|-.| ||.-
T Consensus 73 y~L~PI~aE~Yg~~~~~~yhaVv~R~~~~~--~~~i~~~L~~~q~~fg~~~~~~F~lF~S 130 (172)
T 1h45_A 73 YKLRPVAAEVYGTERQPRTHAVVARSVNGK--EDAIWNLLRQAQEKFGKDKSPKFQLFGS 130 (172)
T ss_dssp TCEEEEEEEEEECSSSEESCEEEEESSSCC--HHHHHHHHHHHHHHHSTTTCSSCCTTCC
T ss_pred CCCEEEEEEECCCCCCCCCCEEEECCCCCC--HHHHHHHHHHHHHHHCCCCCCCEEECCC
T ss_conf 699898963126788886061897687553--8999999999999756998553562268
No 26
>>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:244-395)
Probab=25.36 E-value=31 Score=15.51 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=5.2
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 8987642568314
Q gi|254780660|r 112 IRSIFTKANGSLG 124 (244)
Q Consensus 112 vr~~f~K~gG~lg 124 (244)
.--.+..+|.+++
T Consensus 36 ~~D~~~~~G~~~~ 48 (152)
T 2fp4_B 36 TCDIIFLNGGKPA 48 (152)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHHCCCCE
T ss_conf 8999997268711
No 27
>>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:322-404)
Probab=24.88 E-value=46 Score=14.25 Aligned_cols=57 Identities=9% Similarity=-0.081 Sum_probs=38.4
Q ss_pred ECCCCHHHHHHHHHHCCCCCCCCEEEECCC---CC--EECCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 643201345665420256742221786037---61--02489899999999998752388813110
Q gi|254780660|r 174 CDFNNVGLTSKKLEEKIGEAQSIKVIWKPL---NY--IRLSNADKVKSIIKMIENLEDDDDVQSVY 234 (244)
Q Consensus 174 ~~~~~~~~v~~~Le~~~~~~~~sei~~~P~---~~--V~l~d~e~~~~~~klie~Led~DDVq~Vy 234 (244)
-.|--+..+...|.+.++.+.+....-... .. +.+ |.. ....+++.|+.+++|.+|.
T Consensus 19 D~pGvla~Is~~l~~~~iNI~~~~~~~~~~~~~a~i~i~v-d~~---~~~~i~~~l~~l~~V~~V~ 80 (83)
T 1sc6_A 19 NRPGVLTALNKIFAEQGVNIAAQYLQTSAQXGYVVIDIEA-DED---VAEKALQAXKAIPGTIRAR 80 (83)
T ss_dssp SCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC-CHH---HHHHHHHHHHTSTTEEEEE
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEEEEC-CCC---CCHHHHHHHHHCCCEEEEE
T ss_conf 8776689999999876998799753677545699999844-787---5499999997389889998
No 28
>>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} (A:1-94)
Probab=24.21 E-value=41 Score=14.64 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHH
Q ss_conf 4688259996432013456654202567422217860376102489899999
Q gi|254780660|r 165 FEDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKS 216 (244)
Q Consensus 165 ~~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~ 216 (244)
.....|+|+|+|+....-++..+...-++..+.-+|.--..-+...++.+.+
T Consensus 20 ~~g~~FEI~v~p~~~~~~r~g~~~~l~~Vl~~~~IF~n~~kG~~As~~~L~~ 71 (94)
T 1t95_A 20 KGGEEFEVLVDPYLARDLKEGKEVNFEDLLAAEEVFKDAKKGERASVDELRK 71 (94)
T ss_dssp ETTEEEEEEECHHHHHHHHTTCCCCHHHHBSSSCCEEETTTTEECCHHHHHH
T ss_pred ECCEEEEEEECHHHHHHHHCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHH
T ss_conf 5894899999878999987799778899823014752476677689999999
No 29
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:282-350)
Probab=23.77 E-value=28 Score=15.78 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCC
Q ss_conf 77411265564677557888979999999999999818999414899999999999668
Q gi|254780660|r 2 AGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60 (244)
Q Consensus 2 aGHsKW~nIkh~K~~~D~~k~k~f~k~~keI~~A~k~gG~dp~~N~~L~~ai~~Ak~~~ 60 (244)
.|.|.|+.||. .+.++ +|+= .+++|..+|.+=.+.+
T Consensus 12 ~G~~rWs~IK~--------------------yle~~-~g~I--~d~~ls~lL~nL~k~~ 47 (69)
T 2qen_A 12 LGYNRWSLIRD--------------------YLAVK-GTKI--PEPRLYALLENLKKMN 47 (69)
T ss_dssp TTCCSHHHHHH--------------------HHHHT-TCCC--CHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHH--------------------HHHHH-CCCC--CHHHHHHHHHHHHHCC
T ss_conf 57997679999--------------------99861-2799--9899999999998789
No 30
>>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative; 2.80A {Thermotoga maritima} (A:33-214)
Probab=23.73 E-value=41 Score=14.59 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.4
Q ss_pred HHCCCCHHHHHHHHHHHCCC
Q ss_conf 96688878999999850377
Q gi|254780660|r 57 KNQSMPKENIERAIKKAGSD 76 (244)
Q Consensus 57 k~~~mPk~~Ie~aIkk~~~~ 76 (244)
+...|||++||.|++++..-
T Consensus 69 ~A~klpk~t~q~al~~A~~v 88 (182)
T 1o5h_A 69 KAYKSSEGELQNALKEAASV 88 (182)
T ss_dssp TTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHC
T ss_conf 99756717799999999877
No 31
>>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structural genomics, JCSG, PSI, protein structure initiative; HET: UNL; 1.80A {Thermotoga maritima} (A:)
Probab=23.49 E-value=18 Score=17.16 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=27.8
Q ss_pred HHHHHHHCCCCCCCCEEEECCC-CCEECCCHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCC
Q ss_conf 5665420256742221786037-61024898999999999987523--888131102562662
Q gi|254780660|r 182 TSKKLEEKIGEAQSIKVIWKPL-NYIRLSNADKVKSIIKMIENLED--DDDVQSVYSNLEIAD 241 (244)
Q Consensus 182 v~~~Le~~~~~~~~sei~~~P~-~~V~l~d~e~~~~~~klie~Led--~DDVq~VytN~~i~e 241 (244)
+.+.|++.|+.+ ..-|. |.++-+ - ..+..++..+.+ ..++++||+++.|++
T Consensus 38 ~i~~i~~sGl~y-----~~~pmgT~IEG~-~---dev~~~vk~~he~~~~g~~RV~t~ikId~ 91 (106)
T 1vk8_A 38 AIEKISSWGXKY-----EVGPSNTTVEGE-F---EEIXDRVKELARYLEQFAKRFVLQLDIDY 91 (106)
T ss_dssp HHHHHHTTCSCE-----EECSSCEEEEEC-H---HHHHHHHHHHHHHHTTTCSEEEEEEEEEE
T ss_pred HHHHHHHCCCCE-----EECCCCCEEECC-H---HHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 999999749957-----977984489878-9---99999999999999859986999999980
No 32
>>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=22.75 E-value=32 Score=15.36 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=19.0
Q ss_pred CEECCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 10248989999999999875238881311
Q gi|254780660|r 205 YIRLSNADKVKSIIKMIENLEDDDDVQSV 233 (244)
Q Consensus 205 ~V~l~d~e~~~~~~klie~Led~DDVq~V 233 (244)
.+.+.|.+ -....+.+.++..+|||+|
T Consensus 54 ~~vv~Dd~--~~~D~lee~i~~~e~Vqsv 80 (89)
T 1gh8_A 54 MVVVGDAE--GGTEAAEESLSGIEGVSNI 80 (89)
T ss_dssp EEEESSSC--GGGGHHHHHHTTSCSSEEE
T ss_pred EEEEECCC--CCCHHHHHHHHCCCCCCEE
T ss_conf 99984488--7635899987525785449
No 33
>>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A (A:1-148,A:302-364)
Probab=22.58 E-value=49 Score=14.05 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.9
Q ss_pred HHCCCCHHHCHHHHHHHHHHHHCCCC
Q ss_conf 81899941489999999999966888
Q gi|254780660|r 37 KLSGQNPLENPRLRLAIQNAKNQSMP 62 (244)
Q Consensus 37 k~gG~dp~~N~~L~~ai~~Ak~~~mP 62 (244)
..|||-|-.|+-|+.++..|++.+..
T Consensus 10 ~sGG~tpgiNasi~gvv~~a~~~~~~ 35 (211)
T 3hno_A 10 QSGGVTAVINASAAGVIEAARKQSGK 35 (211)
T ss_dssp ECSSCCSSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88882588979999999999983994
No 34
>>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:)
Probab=22.40 E-value=37 Score=14.96 Aligned_cols=45 Identities=16% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCCEEEEC--CC-CCEECCCHHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCC
Q ss_conf 22217860--37-61024898999999999987523---888131102562662
Q gi|254780660|r 194 QSIKVIWK--PL-NYIRLSNADKVKSIIKMIENLED---DDDVQSVYSNLEIAD 241 (244)
Q Consensus 194 ~~sei~~~--P~-~~V~l~d~e~~~~~~klie~Led---~DDVq~VytN~~i~e 241 (244)
..+++.|. |. |.++-++-| .+..++..+.+ --++.+||+++.|++
T Consensus 30 ~~sgl~y~~~pmgT~iEge~~d---ev~~~ik~~he~~~~~G~~RV~t~ikID~ 80 (99)
T 1lxn_A 30 KKLNVRYEISGXGTLLEAEDLD---ELXEAVKAAHEAVLQAGSDRVYTTLKIDD 80 (99)
T ss_dssp TTSSCEEEEETTEEEEEESSHH---HHHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred HHCCCCEEECCCCCEECCCCHH---HHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 9759966745882265068899---99999999999999779986999999760
No 35
>>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein, ribosome binding; 1.75A {Methanothermobacterthermautotrophicus} (A:1-109)
Probab=21.92 E-value=45 Score=14.33 Aligned_cols=53 Identities=2% Similarity=0.077 Sum_probs=32.4
Q ss_pred CCCCCCEEEEECCCCHHHHHH-HHHHCCCCCCCCEEEECCCCCEECCCHHHHHH
Q ss_conf 346882599964320134566-54202567422217860376102489899999
Q gi|254780660|r 164 LFEDQEYIFYCDFNNVGLTSK-KLEEKIGEAQSIKVIWKPLNYIRLSNADKVKS 216 (244)
Q Consensus 164 ~~~d~~~~i~~~~~~~~~v~~-~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~ 216 (244)
+.....|+|+|+|+....-+. ..+...-++..++-+|.-...-+....+++++
T Consensus 33 k~~g~~FEI~v~p~~~~~~r~~~~~~~L~eVl~~~~IF~n~skG~~As~~~L~~ 86 (109)
T 2wbm_A 33 ESHGERFEVLVDPDLAAEFRREDSDVSVEDVLAVQEVFRDARKGDKASEEAMRK 86 (109)
T ss_dssp EETTEEEEEEECHHHHHHHHSTTCCCCHHHHBSSSCCEEETTTTEECCHHHHHH
T ss_pred EECCEEEEEEECHHHHHHHHHCCCCCCHHHHHCCCEEEECCCCCCCCCHHHHHH
T ss_conf 629988999999789999981798789899825032563476676489999998
Done!