HHSEARCH alignment of GI: 254780660 and SCOP domain: d1kona_

Alignment
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=638.83  Aligned_cols=239  Identities=39%  Similarity=0.633  Sum_probs=229.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCC
Q ss_conf             74112655646775578889799999999999998189994148999999999996688878999999850377-66664
Q gi|254780660|r    3 GHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGSD-DLGNY   81 (244)
Q Consensus         3 GHsKW~nIkh~K~~~D~~k~k~f~k~~keI~~A~k~gG~dp~~N~~L~~ai~~Ak~~~mPk~~Ie~aIkk~~~~-~~~~~   81 (244)
                      ||||||||||+|+++|++||++|+||+|+|++|||+|||||+.|+|||+||++||++||||++|||||+||.|. ...+|
T Consensus         1 GHsKW~nIkh~K~a~D~~k~k~f~k~~k~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPkd~IeraIkk~~g~~~~~~~   80 (244)
T d1kona_           1 GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANM   80 (244)
T ss_dssp             CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC------CCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf             98556666678899889999999999999999998179997619999999999988279657999999834587777743


Q ss_pred             CEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHHHCCCCC
Q ss_conf             02367865059939999994463023589989876425683147886045686447279706775301366775126875
Q gi|254780660|r   82 TNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAF  161 (244)
Q Consensus        82 ~~~~yEg~gP~gvaiiVe~lTDN~nRt~~~vr~~f~K~gG~lg~~Gsv~~~F~~~G~i~~~~~~~d~d~~~e~aie~ga~  161 (244)
                      ++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.++..  ++|.+++++||+||+
T Consensus        81 ~e~~yEg~gp~gvaiiVe~lTDN~nRt~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~--~~d~l~e~aie~gAe  158 (244)
T d1kona_          81 ETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG--DEDTIMEAALEAGAE  158 (244)
T ss_dssp             EEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS--CHHHHHHHHHHHTCS
T ss_pred             EEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEECCCCCHHHHHHEECEECCCCC--CHHHHHHHHHHHCCC
T ss_conf             799998886986389999962747779999999999749956788507456421010044789--989999999985042


Q ss_pred             CCCC-CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             2234-688259996432013456654202567422217860376102489899999999998752388813110256266
Q gi|254780660|r  162 EVLF-EDQEYIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEIA  240 (244)
Q Consensus       162 Dv~~-~d~~~~i~~~~~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~~~klie~Led~DDVq~VytN~~i~  240 (244)
                      |++. +++.++|+|+|++|.+|+++|++.++.+.+++|+|+|+++|+|++ |+++++.+|+|.|||+||||+||||++|+
T Consensus       159 Dv~~~d~~~~~i~~~~~dl~~v~~~Le~~g~~~~~aei~~~P~~~v~l~~-e~~~k~~kLid~Led~DDVq~Vy~N~~i~  237 (244)
T d1kona_         159 DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDA-ETAPKLMRLIDMLEDCDDVQEVYHNGEIS  237 (244)
T ss_dssp             EEEECTTSCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCCCCCT-TTSHHHHHHHHHHHHSSSEEEEEECCCCC
T ss_pred             HHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCH-HHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf             00025777369994304399999999755887224369997688414399-99999999999874434734387888529


Q ss_pred             CCCC
Q ss_conf             2439
Q gi|254780660|r  241 DDII  244 (244)
Q Consensus       241 eeil  244 (244)
                      ||+|
T Consensus       238 ee~l  241 (244)
T d1kona_         238 DEVA  241 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9998


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]