HHSEARCH alignment of GI: 254780660 and SCOP domain: d1mw7a_

Alignment
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]}
Probab=100.00  E-value=0  Score=532.07  Aligned_cols=214  Identities=34%  Similarity=0.458  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             79999999999999818999414899999999999668887899999985037766664023678650599399999944
Q gi|254780660|r   23 KIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALT  102 (244)
Q Consensus        23 k~f~k~~keI~~A~k~gG~dp~~N~~L~~ai~~Ak~~~mPk~~Ie~aIkk~~~~~~~~~~~~~yEg~gP~gvaiiVe~lT  102 (244)
                      |+|+||+|+|++|||+|||||++|||||+||++||++||||++||||||||++++ ++|++++|||||||||+|||||||
T Consensus         1 k~f~kl~reI~vAak~GG~Dp~~N~~L~~ai~~Ak~~nmPkd~IerAIkk~~~~~-~~~~e~~YEg~gp~gvaiiVe~lT   79 (220)
T d1mw7a_           1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMT   79 (220)
T ss_dssp             CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTSTT-CCCEEEEEEEEETTTEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC-CCCEEEEEEEECCCCEEEEEEEEC
T ss_conf             9268999999999970799966099999999999983799428999997404567-884699999861895599999963


Q ss_pred             CCCHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHCCEEEECCCC-----CCCHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf             63023589989876425-68314788604568644727970677-----5301366775126875223468825999643
Q gi|254780660|r  103 DNRNRTASSIRSIFTKA-NGSLGSTGSTTRFFEQIGEIIYHSNI-----GDSNLAMEVAIESDAFEVLFEDQEYIFYCDF  176 (244)
Q Consensus       103 DN~nRt~~~vr~~f~K~-gG~lg~~Gsv~~~F~~~G~i~~~~~~-----~d~d~~~e~aie~ga~Dv~~~d~~~~i~~~~  176 (244)
                      ||+|||+++||++|+|+ ||+||++|||+|||+|+|+|.+.++.     .++|.+++.+||+||+|++.+++.++|+|+|
T Consensus        80 DN~nRt~~~vr~~f~K~~Gg~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~~d~~~~~aie~GaeDve~~ed~~~i~t~~  159 (220)
T d1mw7a_          80 DNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDY  159 (220)
T ss_dssp             SCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEEEEEETTEEEEEEEG
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEEEEECCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEECCH
T ss_conf             83666788899998541245646887515440224556606775321113655666776533521000247751552202


Q ss_pred             CCHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             20134566542025674222178603761024898999999999987523888131102562
Q gi|254780660|r  177 NNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE  238 (244)
Q Consensus       177 ~~~~~v~~~Le~~~~~~~~sei~~~P~~~V~l~d~e~~~~~~klie~Led~DDVq~VytN~~  238 (244)
                      ++|..|+++|++.++.+.+++++|+|+++|+|++ ++++++.+|+|.|||+||||+||||++
T Consensus       160 ~~~~~v~~aL~~~~~~~~~aei~~~p~~~v~l~~-e~~~~~~kLid~LEd~DDVq~Vy~N~e  220 (220)
T d1mw7a_         160 NSFKLLNEGFESLKLPILKASLQRIATTPIELND-EQMELTEKLLDRIEDDDDVVALYTNIE  220 (220)
T ss_dssp             GGHHHHHHHHHHTTCCCSEEEEEEEESSCBCCCH-HHHHHHHHHHHHHHTSTTEEEEEESBC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECCCCEECCH-HHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             3455566777750666312257994488452499-999999999998744058360501789


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein HP0162
species: Helicobacter pylori [TaxId: 210]