RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62] (244 letters) >d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244 Score = 229 bits (585), Expect = 2e-61 Identities = 96/244 (39%), Positives = 140/244 (57%), Gaps = 5/244 (2%) Query: 3 GHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMP 62 GHS++ N HRK +DA + KIF+K+ RE+ +AKL G +P NPRLR A+ A + +M Sbjct: 1 GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMT 60 Query: 63 KENIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANG 121 ++ + RAI + G DD N I YEGYGP G AI+IE L+DNRNRT + +R F+K G Sbjct: 61 RDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGG 120 Query: 122 SLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQE-YIFYCDFNNVG 180 +LG+ GS F + G I + D + ME A+E+ A +V+ D Y + +G Sbjct: 121 NLGTDGSVAYLFSKKGVISFEKG--DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMG 178 Query: 181 LTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEIA 240 LE +A S +V P + A+ ++++I+ LED DDVQ VY N EI+ Sbjct: 179 KVRDALEAAGLKADSAEVSMIPSTKADMD-AETAPKLMRLIDMLEDCDDVQEVYHNGEIS 237 Query: 241 DDII 244 D++ Sbjct: 238 DEVA 241 >d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243 Score = 212 bits (540), Expect = 2e-56 Identities = 94/241 (39%), Positives = 145/241 (60%), Gaps = 1/241 (0%) Query: 5 SQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKE 64 S + I H+K + DA + K+FSKL REI V+ +L G NP NPRLR AI+ AK +MP E Sbjct: 1 SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWE 60 Query: 65 NIERAIKKAG-SDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSL 123 NIERAIKK + + + YEGY P GVA+++ A TDNRNRT S +R +FTK G+L Sbjct: 61 NIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNL 120 Query: 124 GSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTS 183 G++G + FE+ G I + +E AIE A +V ++ +I Y + Sbjct: 121 GASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEELYEVK 180 Query: 184 KKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEIADDI 243 + LE+ + ++ WKP++ +++++ + + +IK++ LE+ DDVQ V +N EI ++I Sbjct: 181 ENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIANFEIPEEI 240 Query: 244 I 244 + Sbjct: 241 L 241 >d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Length = 220 Score = 171 bits (434), Expect = 5e-44 Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 8/222 (3%) Query: 23 KIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGSDDLGNYT 82 K+F KL++ IT++AK G P N +LR AI NAK Q+MPK+NI+ AIK+A S + GN + Sbjct: 1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLS 59 Query: 83 NIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKAN-GSLGSTGSTTRFFEQIGEIIY 141 I YEG GV II+E +TDN RT ++++S F K S+ GS F + Sbjct: 60 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFEC 119 Query: 142 HSNIGDSNLAMEVAIESDAFEVLFEDQE-----YIFYCDFNNVGLTSKKLEEKIGEAQSI 196 N ++ +E + E+ E I D+N+ L ++ E Sbjct: 120 LKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKLPILKA 179 Query: 197 KVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238 + I L N ++++ K+++ +EDDDDV ++Y+N+E Sbjct: 180 SLQRIATTPIEL-NDEQMELTEKLLDRIEDDDDVVALYTNIE 220 >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 Score = 28.9 bits (64), Expect = 0.37 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 2/125 (1%) Query: 48 RLRLAIQNAKNQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNR 107 L+ + + + E + L R P AII+ + N ++ Sbjct: 66 LLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQ 125 Query: 108 TASSIRSIFTKANGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIE--SDAFEVLF 165 + + + +TG + + ++VA E +A VL+ Sbjct: 126 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185 Query: 166 EDQEY 170 Sbjct: 186 YRDAR 190 >d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 Score = 25.4 bits (54), Expect = 4.6 Identities = 8/38 (21%), Positives = 18/38 (47%) Query: 38 LSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGS 75 ++G + +EN + L A + ++ I +K A + Sbjct: 258 MNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAKN 295 >d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]} Length = 363 Score = 25.1 bits (55), Expect = 6.7 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 12/53 (22%) Query: 80 NYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRF 132 N+ IRY GY +G E + D +R+ T A LG G T F Sbjct: 127 NHQLIRYAGYESDG-----ERIGDPASRS-------LTAACEQLGWRGERTDF 167 >d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Length = 362 Score = 24.3 bits (53), Expect = 9.1 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%) Query: 98 IEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGE 138 + AL R IR ++ + L + S R G+ Sbjct: 188 LLALIGTPARYV--IRRVYRNEDNLLAAVVSIERLNLIAGK 226 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.132 0.357 Gapped Lambda K H 0.267 0.0650 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 859,300 Number of extensions: 39449 Number of successful extensions: 89 Number of sequences better than 10.0: 1 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 12 Length of query: 244 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,268,006 Effective search space: 204148966 Effective search space used: 204148966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 52 (24.0 bits)