RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780660|ref|YP_003065073.1| hypothetical protein
CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62]
(244 letters)
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 229 bits (585), Expect = 2e-61
Identities = 96/244 (39%), Positives = 140/244 (57%), Gaps = 5/244 (2%)
Query: 3 GHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMP 62
GHS++ N HRK +DA + KIF+K+ RE+ +AKL G +P NPRLR A+ A + +M
Sbjct: 1 GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMT 60
Query: 63 KENIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANG 121
++ + RAI + G DD N I YEGYGP G AI+IE L+DNRNRT + +R F+K G
Sbjct: 61 RDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGG 120
Query: 122 SLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQE-YIFYCDFNNVG 180
+LG+ GS F + G I + D + ME A+E+ A +V+ D Y + +G
Sbjct: 121 NLGTDGSVAYLFSKKGVISFEKG--DEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMG 178
Query: 181 LTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEIA 240
LE +A S +V P + A+ ++++I+ LED DDVQ VY N EI+
Sbjct: 179 KVRDALEAAGLKADSAEVSMIPSTKADMD-AETAPKLMRLIDMLEDCDDVQEVYHNGEIS 237
Query: 241 DDII 244
D++
Sbjct: 238 DEVA 241
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
[TaxId: 63363]}
Length = 243
Score = 212 bits (540), Expect = 2e-56
Identities = 94/241 (39%), Positives = 145/241 (60%), Gaps = 1/241 (0%)
Query: 5 SQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKE 64
S + I H+K + DA + K+FSKL REI V+ +L G NP NPRLR AI+ AK +MP E
Sbjct: 1 SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWE 60
Query: 65 NIERAIKKAG-SDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSL 123
NIERAIKK + + + YEGY P GVA+++ A TDNRNRT S +R +FTK G+L
Sbjct: 61 NIERAIKKGAGELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNL 120
Query: 124 GSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTS 183
G++G + FE+ G I + +E AIE A +V ++ +I Y +
Sbjct: 121 GASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEELYEVK 180
Query: 184 KKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEIADDI 243
+ LE+ + ++ WKP++ +++++ + + +IK++ LE+ DDVQ V +N EI ++I
Sbjct: 181 ENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIANFEIPEEI 240
Query: 244 I 244
+
Sbjct: 241 L 241
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
pylori [TaxId: 210]}
Length = 220
Score = 171 bits (434), Expect = 5e-44
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Query: 23 KIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGSDDLGNYT 82
K+F KL++ IT++AK G P N +LR AI NAK Q+MPK+NI+ AIK+A S + GN +
Sbjct: 1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLS 59
Query: 83 NIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKAN-GSLGSTGSTTRFFEQIGEIIY 141
I YEG GV II+E +TDN RT ++++S F K S+ GS F +
Sbjct: 60 EITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFEC 119
Query: 142 HSNIGDSNLAMEVAIESDAFEVLFEDQE-----YIFYCDFNNVGLTSKKLEEKIGEAQSI 196
N ++ +E + E+ E I D+N+ L ++ E
Sbjct: 120 LKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKLPILKA 179
Query: 197 KVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238
+ I L N ++++ K+++ +EDDDDV ++Y+N+E
Sbjct: 180 SLQRIATTPIEL-NDEQMELTEKLLDRIEDDDDVVALYTNIE 220
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 28.9 bits (64), Expect = 0.37
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 2/125 (1%)
Query: 48 RLRLAIQNAKNQSMPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNR 107
L+ + + + E + L R P AII+ + N ++
Sbjct: 66 LLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQ 125
Query: 108 TASSIRSIFTKANGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIE--SDAFEVLF 165
+ + + +TG + + ++VA E +A VL+
Sbjct: 126 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185
Query: 166 EDQEY 170
Sbjct: 186 YRDAR 190
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase
{Thermotoga maritima [TaxId: 2336]}
Length = 296
Score = 25.4 bits (54), Expect = 4.6
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 38 LSGQNPLENPRLRLAIQNAKNQSMPKENIERAIKKAGS 75
++G + +EN + L A + ++ I +K A +
Sbjct: 258 MNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAKN 295
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 25.1 bits (55), Expect = 6.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 80 NYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRF 132
N+ IRY GY +G E + D +R+ T A LG G T F
Sbjct: 127 NHQLIRYAGYESDG-----ERIGDPASRS-------LTAACEQLGWRGERTDF 167
>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 362
Score = 24.3 bits (53), Expect = 9.1
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 98 IEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGE 138
+ AL R IR ++ + L + S R G+
Sbjct: 188 LLALIGTPARYV--IRRVYRNEDNLLAAVVSIERLNLIAGK 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.357
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 859,300
Number of extensions: 39449
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 12
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)