HHsearch alignment for GI: 254780661 and conserved domain: COG0349
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=91.97 E-value=0.87 Score=23.81 Aligned_cols=131 Identities=22% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCEEEEECCCCCCCCCCCE--EEEEEEEEECCCCEECCEEEEEEECCCCC-CCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf 8379997527889877260--48999999838972804002266217888-77857898985799889960799979999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDR--PAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITGITPQKALRDGVVEAEFS 79 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~--iiq~~~i~~d~~~~~~~~~~~~~~~~~~~-~~p~p~a~~v~git~~~~~~~~~~~~e~~ 79 (471)
T Consensus 17 ~~~iAIDTEf~r~~t~~p~LcLIQi~----~~e~~-------~lIdp~~~~~d~~~------------------------ 61 (361)
T COG0349 17 SKAIAIDTEFMRLRTYYPRLCLIQIS----DGEGA-------SLIDPLAGILDLPP------------------------ 61 (361)
T ss_pred CCEEEEECCCCCCCCCCCCEEEEEEE----CCCCC-------EEECCCCCCCCCCH------------------------
T ss_conf 98079832224664368833799984----48886-------68622655466636------------------------
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
T Consensus 62 --l~~Ll~d~~-v~KIfHaa~~DL~~l~~~~g--~~p~---------plfdTqiAa~l~-------------g~~~-~~g 113 (361)
T COG0349 62 --LVALLADPN-VVKIFHAARFDLEVLLNLFG--LLPT---------PLFDTQIAAKLA-------------GFGT-SHG 113 (361)
T ss_pred --HHHHHCCCC-EEEEECCCCCCHHHHHHHCC--CCCC---------CHHHHHHHHHHC-------------CCCC-CCC
T ss_conf --999862876-02550256351999998618--8877---------346899999980-------------9863-232
Q ss_pred HHHHHHH-HCCCCCCCCH----------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989987-1887643101----------------33318999999999986422
Q gi|254780661|r 160 LQDLALA-NGIEHVNAHD----------------AKADVYATLALVWLIREKKP 196 (471)
Q Consensus 160 L~~la~~-n~i~~~~aH~----------------A~~D~~~t~~l~k~i~~~~p 196 (471)
T Consensus 114 l~~Lv~~ll~v~ldK~~q~SDW~~RPLs~~Ql~YAa~DV~yL~~l~~~L~~~L~ 167 (361)
T COG0349 114 LADLVEELLGVELDKSEQRSDWLARPLSEAQLEYAAADVEYLLPLYDKLTEELA 167 (361)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999996885364445465555799999999999999999999999999998