HHsearch alignment for GI: 254780661 and conserved domain: COG5018
>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only].
Probab=98.77 E-value=3.6e-08 Score=71.29 Aligned_cols=171 Identities=15% Similarity=0.071 Sum_probs=121.1
Q ss_pred CCCEEEEECCCCC----CCCCCCEEEEEEEEEECC-CCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 8837999752788----987726048999999838-97280400226621788877857898985799889960799979
Q gi|254780661|r 2 TNHFVIYDYETFG----RDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 (471)
Q Consensus 2 ~~~~v~~D~ETtG----~~~~~~~iiq~~~i~~d~-~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~ 76 (471)
T Consensus 3 ~~~lLIID~EaT~~eG~~~~~e~eiiei~a~lv~~id~~vvd~F~s-yVRP~~~P~Lt~~Ckslt~I~Q~~VD~ap-ifs 80 (210)
T COG5018 3 TNSLLIIDFEATMPEGKYSPQEFEIIEIEAGLVKSIDDEVVDTFSS-YVRPKKFPKLTKRCKSLTKITQKQVDEAP-IFS 80 (210)
T ss_pred CCEEEEEEEEEECCCCCCCCHHCEEEEEHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHH
T ss_conf 7548999756535677877033433442236888756889999997-42754373288999886203464036550-488
Q ss_pred HHHHHHHHHHHCC----CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999995117----965999505578999999999850785321325688710015888865556532100244444
Q gi|254780661|r 77 EFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152 (471)
Q Consensus 77 e~~~~i~~~~~~~----~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~ 152 (471)
T Consensus 81 ~v~E~f~r~L~~h~Pr~~~~wa~wG--~~Dm~~l~q~~~~~~~~p~~~---kgp-~vdl-------~~~yk~v~~~pr~- 146 (210)
T COG5018 81 MVFEDFIRKLNEHDPRKNSTWATWG--NMDMKVLKQNCMFNHIPPFPF---KGP-MVDL-------SLEYKNVFGDPRL- 146 (210)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHHHHCCCCCCCC---CCC-CCHH-------HHHHHHHHCCCCC-
T ss_conf 8999999999854955377502026--041999999998617998534---575-1008-------9998787359852-
Q ss_pred CCCCCCCHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5443310898998718876-4310133318999999999986
Q gi|254780661|r 153 DGATSFKLQDLALANGIEH-VNAHDAKADVYATLALVWLIRE 193 (471)
Q Consensus 153 ~~~~~~kL~~la~~n~i~~-~~aH~A~~D~~~t~~l~k~i~~ 193 (471)
T Consensus 147 -----tgln~ale~~G~sf~G~~HraldDArn~~rl~klv~~ 183 (210)
T COG5018 147 -----TGLNKALEEYGDSFTGTHHRALDDARNAYRLFKLVEQ 183 (210)
T ss_pred -----CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf -----1378999984245677301447778889999998712