HHsearch alignment for GI: 254780661 and conserved domain: COG5228
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification].
Probab=94.37 E-value=0.18 Score=28.24 Aligned_cols=175 Identities=19% Similarity=0.121 Sum_probs=104.6
Q ss_pred CEEEEECCCCCC---------------------CCCCCEEEEEEEEEECCCCEECC-----EEEEEEECCCCCCCCCHH-
Q ss_conf 379997527889---------------------87726048999999838972804-----002266217888778578-
Q gi|254780661|r 4 HFVIYDYETFGR---------------------DVALDRPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPE- 56 (471)
Q Consensus 4 ~~v~~D~ETtG~---------------------~~~~~~iiq~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~p~p~- 56 (471)
T Consensus 43 n~vSmdTEFpGvvArPiG~FkSs~dyhYQtlraNVD~LkiIQlGlsLSDe~GN~P~~~sTWQFN-F~F~l~~dm-ya~ES 120 (299)
T COG5228 43 NHVSMDTEFPGVVARPIGTFKSSVDYHYQTLRANVDFLKIIQLGLSLSDENGNKPNGPSTWQFN-FEFDLKKDM-YATES 120 (299)
T ss_pred CCEEECCCCCCEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHEEEEECCCCCCCCCCCCEEEEE-EEECCHHHH-CCHHH
T ss_conf 8004315567403024333435422788988605103202000004103029999997326888-875501200-35688
Q ss_pred --HHHHHCCCHHHHHHCCCCHHHHHHHHHH--HHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf --9898579988996079997999999999--951179659995055789999999998507853213256887100158
Q gi|254780661|r 57 --AVFITGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132 (471)
Q Consensus 57 --a~~v~git~~~~~~~~~~~~e~~~~i~~--~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l 132 (471)
T Consensus 121 ieLL~ksgIdFkkHe~~GI~v~eF~elLm~SGLvm~e~VtWitfHs-aYDfgyLikilt~~plP~---------~~EdFy 190 (299)
T COG5228 121 IELLRKSGIDFKKHENLGIDVFEFSELLMDSGLVMDESVTWITFHS-AYDFGYLIKILTNDPLPN---------NKEDFY 190 (299)
T ss_pred HHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCEECCCEEEEEEEC-CHHHHHHHHHHHCCCCCC---------CHHHHH
T ss_conf 9999980887556766397899999998626723214157999521-000899999983698875---------389999
Q ss_pred HHHHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 888655565321002444445--4433108989987188764-310133318999999999986
Q gi|254780661|r 133 DVMRAIYAFSPDGIQWPSRDD--GATSFKLQDLALANGIEHV-NAHDAKADVYATLALVWLIRE 193 (471)
Q Consensus 133 ~~~~~~~~~~p~~~~~~~~~~--~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k~i~~ 193 (471)
T Consensus 191 ~~l---~~yfP~fYDik~v~ks~~~~~KglQei~ndlql~r~g~QhQagsdaLlTa~~ff~~R~ 251 (299)
T COG5228 191 WWL---HQYFPNFYDIKLVYKSVLNNSKGLQEIKNDLQLQRSGQQHQAGSDALLTADEFFLPRF 251 (299)
T ss_pred HHH---HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHCCCHHHHHHHHHCCHHH
T ss_conf 999---9977653125889876541556798853727651055655414304443677545132