HHsearch alignment for GI: 254780661 and conserved domain: PRK05359

>PRK05359 oligoribonuclease; Provisional.
Probab=99.65  E-value=2.7e-15  Score=117.04  Aligned_cols=165  Identities=18%  Similarity=0.208  Sum_probs=118.4

Q ss_pred             CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCE-EEEEEECCCCCCC--CCHHHHHHH---CCCHHHHHHCCCC
Q ss_conf             988379997527889877260489999998389728040-0226621788877--857898985---7998899607999
Q gi|254780661|r    1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYL--PDPEAVFIT---GITPQKALRDGVV   74 (471)
Q Consensus         1 m~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~-~~~~~~~~~~~~~--p~p~a~~v~---git~~~~~~~~~~   74 (471)
T Consensus         1 ~~~~lvWiDlEMTGLd~~~d~IlEiA~ivTD~~Ln~~~eg~~-~vI~~~~e~L~~M~~w~~~~H~~sGL~-~~v~~S~~s   78 (181)
T PRK05359          1 NEDNLIWIDLEMTGLDPERDRIIEIATIVTDADLNILAEGPV-IAIHQSDEVLAAMDEWNTRTHTRSGLI-DRVRASTVT   78 (181)
T ss_pred             CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCE-EEEECCHHHHHHHHHHHHCCCCCCCCH-HHHHCCCCC
T ss_conf             998658997613489878776899999999887767023761-788589899975217875057433206-678628988


Q ss_pred             HHHHHHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             799999999995117---96599950557899999999985078532132568871001588886555653210024444
Q gi|254780661|r   75 EAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR  151 (471)
Q Consensus        75 ~~e~~~~i~~~~~~~---~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~  151 (471)
T Consensus        79 ~~~AE~~~l~fi~~~~~~~~~pLaGNSV~~DR~FL~k~MP~--l~~~l-hY----R~iDVSSikEl~~rW~p~~~~~p--  149 (181)
T PRK05359         79 EAEAEAQTLEFLKQWVPAGKSPLCGNSIGQDRRFLARYMPE--LEAYF-HY----RNLDVSTLKELARRWKPEILNGF--  149 (181)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHCHH--HHHHC-CE----EEEECCCHHHHHHHHCHHHCCCC--
T ss_conf             99999999999999679999751687200328899984806--79758-85----67851259999988483220169--


Q ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             4544331089899871887643101333189999999999864
Q gi|254780661|r  152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK  194 (471)
Q Consensus       152 ~~~~~~~kL~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~  194 (471)
T Consensus       150 ------------------~K~~~HrAl~DI~eSI~ELk~Yr~~  174 (181)
T PRK05359        150 ------------------KKQGTHRALADIRESIAELKYYREH  174 (181)
T ss_pred             ------------------CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ------------------9888744188999999999999981