HHsearch alignment for GI: 254780661 and conserved domain: PRK05359
>PRK05359 oligoribonuclease; Provisional.
Probab=99.65 E-value=2.7e-15 Score=117.04 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=118.4
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCE-EEEEEECCCCCCC--CCHHHHHHH---CCCHHHHHHCCCC
Q ss_conf 988379997527889877260489999998389728040-0226621788877--857898985---7998899607999
Q gi|254780661|r 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYL--PDPEAVFIT---GITPQKALRDGVV 74 (471)
Q Consensus 1 m~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~-~~~~~~~~~~~~~--p~p~a~~v~---git~~~~~~~~~~ 74 (471)
T Consensus 1 ~~~~lvWiDlEMTGLd~~~d~IlEiA~ivTD~~Ln~~~eg~~-~vI~~~~e~L~~M~~w~~~~H~~sGL~-~~v~~S~~s 78 (181)
T PRK05359 1 NEDNLIWIDLEMTGLDPERDRIIEIATIVTDADLNILAEGPV-IAIHQSDEVLAAMDEWNTRTHTRSGLI-DRVRASTVT 78 (181)
T ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCE-EEEECCHHHHHHHHHHHHCCCCCCCCH-HHHHCCCCC
T ss_conf 998658997613489878776899999999887767023761-788589899975217875057433206-678628988
Q ss_pred HHHHHHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 799999999995117---96599950557899999999985078532132568871001588886555653210024444
Q gi|254780661|r 75 EAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 (471)
Q Consensus 75 ~~e~~~~i~~~~~~~---~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~ 151 (471)
T Consensus 79 ~~~AE~~~l~fi~~~~~~~~~pLaGNSV~~DR~FL~k~MP~--l~~~l-hY----R~iDVSSikEl~~rW~p~~~~~p-- 149 (181)
T PRK05359 79 EAEAEAQTLEFLKQWVPAGKSPLCGNSIGQDRRFLARYMPE--LEAYF-HY----RNLDVSTLKELARRWKPEILNGF-- 149 (181)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHCHH--HHHHC-CE----EEEECCCHHHHHHHHCHHHCCCC--
T ss_conf 99999999999999679999751687200328899984806--79758-85----67851259999988483220169--
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4544331089899871887643101333189999999999864
Q gi|254780661|r 152 DDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194 (471)
Q Consensus 152 ~~~~~~~kL~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~ 194 (471)
T Consensus 150 ------------------~K~~~HrAl~DI~eSI~ELk~Yr~~ 174 (181)
T PRK05359 150 ------------------KKQGTHRALADIRESIAELKYYREH 174 (181)
T ss_pred ------------------CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ------------------9888744188999999999999981