HHsearch alignment for GI: 254780661 and conserved domain: PRK05601
>PRK05601 DNA polymerase III subunit epsilon; Validated.
Probab=99.45 E-value=1.5e-12 Score=99.37 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=124.3
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
T Consensus 47 p~va~~~~ttgihpst~r~v~~da~~~da~Ge~~~~f~~~---lNPg~--DPGP~HiHGLT~e~L~gAP-~F~~ia~~l~ 120 (377)
T PRK05601 47 PFVAVSIQSSGIHPSTSRMVTIDAVTLSADGEPVETFHAV---LNPKT--DPGPFHLHGVTEEEFASAK-RFGQILKSLD 120 (377)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEE---CCCCC--CCCCCCCCCCCHHHHCCCC-CHHHHHHHHH
T ss_conf 7279998855757775505888788864789722345771---27999--9998101378999970684-2899999999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCC----------------------CCCCCCHHHHHHHHHHH
Q ss_conf 99511796599950557899999999985078532132568----------------------87100158888655565
Q gi|254780661|r 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN----------------------GNSRWDLLDVMRAIYAF 141 (471)
Q Consensus 84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~----------------------~~~~~D~l~~~~~~~~~ 141 (471)
T Consensus 121 ~lLd--GRtLVaHN-a~fdw~Fia~Ea~RA~~~a~-~~~R~~~r~~~~~~r~rrrqr~gh~P~P~~iv~TLAlaRR~~-- 194 (377)
T PRK05601 121 RLID--GRTLLLHN-APRTWGFIVSEAKRAMNDAA-RANRNRNRGNRRGGRGRRRQRVGHIPKPLVIVDTLASARRQA-- 194 (377)
T ss_pred HHHC--CCEEEEEC-CCCHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHCCCCCCCCCCEEEHHHHHHHCC--
T ss_conf 9845--86799835-60208899999998655423-443210013444444310100367788752100777776418--
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 3210024444454433108989987188764310133318999
Q gi|254780661|r 142 SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 (471)
Q Consensus 142 ~p~~~~~~~~~~~~~~~kL~~la~~n~i~~~~aH~A~~D~~~t 184 (471)
T Consensus 195 -----------l~~~d~RL~~vA~~~g~~a~~a~a~~~ra~~~ 226 (377)
T PRK05601 195 -----------IALDDVRIRGVAHTLGLDAPAAEASVERAQVP 226 (377)
T ss_pred -----------CCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf -----------99874355666766088863013216563355