HHsearch alignment for GI: 254780661 and conserved domain: PRK05762
>PRK05762 DNA polymerase II; Reviewed.
Probab=98.17 E-value=8.7e-05 Score=49.53 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=89.3
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
T Consensus 156 rvlSfDIEc~~~----g~ii~I~l--~~~~~~~v--~-~-~g~~------~~---------~~~v~~-~~~E~eLL~~F~ 209 (785)
T PRK05762 156 KVVSLDIETSNK----GELYSIGL--EGCGQRQV--Y-M-LGEA------NG---------DAELEY-VADEKALLERFN 209 (785)
T ss_pred EEEEEEEEECCC----CCEEEEEE--CCCCCCEE--E-E-ECCC------CC---------CCEEEE-ECCHHHHHHHHH
T ss_conf 699999897799----98899995--17998468--9-9-6688------99---------853899-099999999999
Q ss_pred HHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCC--------C-C----------CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99511796-5999505578999999999850785321--------3-2----------5688710015888865556532
Q gi|254780661|r 84 QFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYR--------W-S----------WDNGNSRWDLLDVMRAIYAFSP 143 (471)
Q Consensus 84 ~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~--------~-~----------~~~~~~~~D~l~~~~~~~~~~p 143 (471)
T Consensus 210 ~~i~~~DPDII~GyNi~~FDlpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~---- 285 (785)
T PRK05762 210 AWFAEFDPDVIIGWNVVQFDLRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAF---- 285 (785)
T ss_pred HHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHH----
T ss_conf 9999859998996274787779999999994998546878886533315655660599984289997099998752----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHCCCCC---CCC-------------------HHHHHHHHHHHHHHHH
Q ss_conf 10024444454433108989987188764---310-------------------1333189999999999
Q gi|254780661|r 144 DGIQWPSRDDGATSFKLQDLALANGIEHV---NAH-------------------DAKADVYATLALVWLI 191 (471)
Q Consensus 144 ~~~~~~~~~~~~~~~kL~~la~~n~i~~~---~aH-------------------~A~~D~~~t~~l~k~i 191 (471)
T Consensus 286 ---------~~l~sYsL~~Va~~~Lge~K~~~~~~~r~~eI~~~~~~~r~~l~~Y~l~Da~L~~~L~~kl 346 (785)
T PRK05762 286 ---------YEFKSFSLENVAQELLGEGKAIDNPYDRMDEIDRYFADDKPALAKYNLKDCELVTRIFEKT 346 (785)
T ss_pred ---------HCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------0367662999999985445555666666888899885468999999999999999999987