HHsearch alignment for GI: 254780661 and conserved domain: PRK06195

>PRK06195 DNA polymerase III subunit epsilon; Validated.
Probab=99.96  E-value=3.1e-28  Score=200.25  Aligned_cols=162  Identities=21%  Similarity=0.243  Sum_probs=136.3

Q ss_pred             CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf             37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r    4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH   83 (471)
Q Consensus         4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~   83 (471)
T Consensus         2 ~fvviD~ETt~--~~~d~iieIg~v~v-~~g~iv~~~~~-Li~P~~-~~~~p~~i~ihGIt~~~v~~aP-~f~ev~~~~~   75 (309)
T PRK06195          2 DFVAIDFETAN--EKRNSPCSIGIVVV-KDGEIVEKVHY-LIKPKE-MRFMPINIGIHGIRPHMVQDEL-EFDKIWEKIK   75 (309)
T ss_pred             CEEEEEEECCC--CCCCEEEEEEEEEE-ECCEEEEEEEE-EECCCC-CCCCCCEEEECCCCHHHHHCCC-CHHHHHHHHH
T ss_conf             29999978999--99980599999999-99999999999-989999-8888744640377999996599-9999999999


Q ss_pred             HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             99511796599950557899999999985078532132568871001588886555653210024444454433108989
Q gi|254780661|r   84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL  163 (471)
Q Consensus        84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l  163 (471)
T Consensus        76 ~fi~--~~vlVaHN-a~FD~~fL~~~~~r~gl~~~------~~~~~cTl~LAR~~~-------------p~l~~~kL~~L  133 (309)
T PRK06195         76 DYFN--DNLVIAHN-ASFDISVLRKTLELYNIPMP------DFEYICTMKLAKNFY-------------SNIPNARLNTV  133 (309)
T ss_pred             HHHC--CCEEEEEC-CHHHHHHHHHHHHHCCCCCC------CCCEEEHHHHHHHHC-------------CCCCCCCHHHH
T ss_conf             9857--99799956-28889999999998499999------997774799999865-------------57765788899


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9871887643101333189999999999864
Q gi|254780661|r  164 ALANGIEHVNAHDAKADVYATLALVWLIREK  194 (471)
Q Consensus       164 a~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~  194 (471)
T Consensus       134 a~~~gi~~-~hH~Al~DA~A~a~I~~~~~~~  163 (309)
T PRK06195        134 NNFLGYEF-KHHDALEDAMACSNILLNISKE  163 (309)
T ss_pred             HHHHCCCC-CCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99859880-1168510199999999999998