HHsearch alignment for GI: 254780661 and conserved domain: PRK06309
>PRK06309 DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=6.6e-34 Score=236.70 Aligned_cols=167 Identities=21% Similarity=0.194 Sum_probs=141.5
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
T Consensus 1 m~~~V~fD~ETTGl~~~~DrIIEiaav~----~~~~e~f~~l-i--nP~~pIp~~a~~ihGIt~e~v~~~P-~~~ev~~~ 72 (232)
T PRK06309 1 MPALIFYDTETTGTQIDKDRIIEIAAYN----GVTSESFQTY-V--NPEIPIPAEATKIHGITTSEVASAP-KFPEAYQK 72 (232)
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEEEEE----CCCCCEEEEE-E--CCCCCCCHHHHCCCCCCHHHHHCCC-CHHHHHHH
T ss_conf 9968999711799599994589999892----7567689999-7--9989699656210383999980599-89999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
T Consensus 73 ~~~f~~~-~~ilVaHN~~~FD~~fL~~e~~r~g~~~~------~~~~iDTl~lar~l---~P----------~l~~h~L~ 132 (232)
T PRK06309 73 FREFCGT-DNILVAHNNDGFDFPLLVKECRRHSLEPL------TLRTIDSLKWAQKY---RP----------DLPKHNLQ 132 (232)
T ss_pred HHHHHCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCC------CCCHHHHHHHHHHH---CC----------CCCCCCHH
T ss_conf 9998579-98899848965679999999998599867------74053799999997---58----------97768899
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89987188764310133318999999999986422
Q gi|254780661|r 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196 (471)
Q Consensus 162 ~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p 196 (471)
T Consensus 133 ~L~~~~gi~~~~aHrAl~Da~at~~vf~~ll~~~~ 167 (232)
T PRK06309 133 YLRQVYGFAENQAHRALDDVITLHRVFSALVGDLS 167 (232)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99998099998888859999999999999872169