HHsearch alignment for GI: 254780661 and conserved domain: PRK09146
>PRK09146 DNA polymerase III subunit epsilon; Validated.
Probab=99.93 E-value=1.1e-24 Score=177.54 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=132.9
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEC--CEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf 83799975278898772604899999983897280--4002266217888778578989857998899607999799999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~--~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~ 80 (471)
T Consensus 47 ~~fvalD~ETTGLdp~~D~IiSIGaV~i~-~~~I~l~~a~~~-lV~--p~~~i~~~s~~IHGIt~~~l~~ap-~l~evl~ 121 (239)
T PRK09146 47 VPFVALDFETTGLDPEQDAIVSIGLVPFT-LQRIRCRQARHW-VVK--PRRPLNEESVVIHGITHSDLQDAP-DLERILD 121 (239)
T ss_pred CCEEEEECCCCCCCCCCCCEEEEEEEEEE-CCEEEECCEEEE-EEC--CCCCCCCCCEEECCCCHHHHHCCC-CHHHHHH
T ss_conf 87899964157888788854899899987-888865341589-988--999787645110696989985699-9999999
Q ss_pred HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99999511796599950557899999999985078532132568871001588886555653210024444454433108
Q gi|254780661|r 81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160 (471)
Q Consensus 81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL 160 (471)
T Consensus 122 ~ll~~l~--g~VLVaH~-a~~D~~FL~~a~~~~~g~~l------~~P~IDTl~Le~~~~~~~~~~~~~r~~~~~~~slrL 192 (239)
T PRK09146 122 ELLEALA--GKVVVVHY-RRIERDFLDQALRNRIGEGI------EFPVIDTMEIEARIQRKQAGGLWNRLKGKKPESIRL 192 (239)
T ss_pred HHHHHHC--CCEEEEEC-CHHHHHHHHHHHHHHHCCCC------CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 9999818--99899968-39999999999999628898------874644899999998854200444313589867638
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9899871887643101333189999999999
Q gi|254780661|r 161 QDLALANGIEHVNAHDAKADVYATLALVWLI 191 (471)
Q Consensus 161 ~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i 191 (471)
T Consensus 193 ~~~r~rYgLP~y~aH~AL~DAlATAELflAQ 223 (239)
T PRK09146 193 ADSRLRYGLPAYPPHHALTDAIATAELLQAQ 223 (239)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999981989888767199999999999999