HHsearch alignment for GI: 254780661 and conserved domain: PRK11779

>PRK11779 sbcB exonuclease I; Provisional.
Probab=100.00  E-value=0  Score=931.99  Aligned_cols=470  Identities=56%  Similarity=1.001  Sum_probs=457.3

Q ss_pred             CCCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHH
Q ss_conf             98837999752788987726048999999838972804002266217888778578989857998899607999799999
Q gi|254780661|r    1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR   80 (471)
Q Consensus         1 m~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~   80 (471)
T Consensus         5 ~~~~f~fyD~ETtG~~~~~dqi~Qfa~i~td~~ln~i~~~~~~~c~~~~~~lP~p~A~lvt~itp~~~~~~~~~~~~~~~   84 (477)
T PRK11779          5 MQPTFLWHDYETFGANPALDRPAQFAGIRTDADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPEAEFAA   84 (477)
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHHHHCCCCHHHHHH
T ss_conf             77857999453689998776501257789877537257741056447999899930431148899999866998799999


Q ss_pred             HHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf             99999511796599950557899999999985078532132568871001588886555653210024444454433108
Q gi|254780661|r   81 RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL  160 (471)
Q Consensus        81 ~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL  160 (471)
T Consensus        85 ~i~~~~~~~~t~~iGyNsi~FDee~~R~~fy~nl~dPY~~~~~ngNsR~Dll~~~r~~~~~~p~~i~~p~~~~G~~sfKL  164 (477)
T PRK11779         85 RIHAEFSQPGTCILGYNNIRFDDEVTRYIFYRNFYDPYAREWQNGNSRWDLLDVVRACYALRPEGINWPENEDGLPSFKL  164 (477)
T ss_pred             HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEH
T ss_conf             99999668984898227754489999999998613457664248970579999999998748366116737999854449


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEE
Q ss_conf             98998718876431013331899999999998642268999996238898997420015760799701010477875068
Q gi|254780661|r  161 QDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI  240 (471)
Q Consensus       161 ~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~K~~v~~~l~~~~~~~~~~v~~~~~~~~~~~~~v  240 (471)
T Consensus       165 e~la~aNgi~h~~AHDAl~Dv~aTi~laklIk~k~P~l~~~~l~~r~K~~v~~~i~~~~~~p~~~vs~~fg~~~~~~~~v  244 (477)
T PRK11779        165 EHLTKANGIEHENAHDAMSDVYATIAMAKLIKQKQPKLFDYLFSLRSKRKVAALIDVPQMKPLVHVSGMFGAERGCTSWV  244 (477)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEE
T ss_conf             99998559876554106889999999999998769699999998437999999986502670389821016666622487


Q ss_pred             EEEECCCCCCCEEEEEECCCCCCHHCCCCHHHHHHHHHCCHHHH-HCCCCCCEEEEECCCCCEECCHHHCCHHHHHHCCC
Q ss_conf             86302888774478710356872000799889998740651442-02477430576536787543755703134554035
Q gi|254780661|r  241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGI  319 (471)
Q Consensus       241 ~~~~~~p~~~n~~i~fDL~~Dp~~~l~l~~~el~~~l~~~~~~~-~~~~~~~lr~ik~Nk~Pil~~~~~~~~~~~~~~~i  319 (471)
T Consensus       245 ~pl~~hP~n~N~~i~fDL~~DP~~ll~ls~~eL~~~l~t~~~~l~~~~~~~plk~I~iNK~Pil~p~~~l~~e~~~rl~i  324 (477)
T PRK11779        245 APLAWHPTNKNAVIVCDLAGDPSPLLELDADTLRERLYTRRADLAEGELPVPLKLVHLNKCPVLAPAKTLRPEDAERLGI  324 (477)
T ss_pred             EEECCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHCCCHHHHHCCCCCCCEEEEEECCCCEECCHHHCCHHHHHHCCC
T ss_conf             63024788877658887357979986699999999971543221034677650675307888017657579435877099


Q ss_pred             CHHHHHHHHHHHHHCHHHHHHHHHHHHCC-CCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
Q ss_conf             88999998999761854688887443013-34433320454102468976622168897599889862120489837999
Q gi|254780661|r  320 DHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE  398 (471)
Q Consensus       320 ~~~~l~~r~~~l~~n~~~~~~~~~~~~~~-~~~~~~~~E~~IY~gF~s~~Dk~~~~~fh~a~~~~k~~i~~~f~D~Rl~~  398 (471)
T Consensus       325 d~~~~~~ra~~ik~n~~f~~kv~~i~~~~~~~~~~~d~E~~IY~GF~s~~Dk~lm~~fh~a~~~el~~~~~~F~D~RL~e  404 (477)
T PRK11779        325 DRAACLDNLKLLRQNPELREKVVAVFAEEEEFAPSDDVDAQLYDGFFSDADRRLMKIIRETEPENLAALDLTFDDPRLEE  404 (477)
T ss_pred             CHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf             99999999999986989999999998602157899997899775799989999999998199999984045787821899


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999996311810089999999999999750678889999999999965149988999999999999975278
Q gi|254780661|r  399 LFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK  470 (471)
Q Consensus       399 l~~R~i~~n~P~~Ls~~~~~~~~~~i~~rl~~~~i~~~~~ei~~l~~~~~~d~~~~~iL~~l~~yl~~l~~~  470 (471)
T Consensus       405 LlfRy~ARnfP~~Ls~~E~~~w~~~~~~RL~~~tl~~~~~~id~L~~~~~~d~~k~~iL~~L~~Y~e~l~~~  476 (477)
T PRK11779        405 LLFRYRARNFPETLDDEEQQRWLEHRRQRLTDETLQQYAAKLEQLAQEYEDDEEKQALLKALYDYAEELVPT  476 (477)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999873963399999999999999985766199999999999866018999999999999999987301