>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.

Probab=100.00 E-value=2.8e-45 Score=309.31 Aligned_cols=435 Identities=17% Similarity=0.117 Sum_probs=309.9 Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCC-EECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH Q ss_conf 83799975278898772604899999983897-28040022662178887785789898579988996079997999999 Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471) Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~-~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471) T Consensus 204 aTyVVfD~ETTGLsp~~d~iIE~gA~k~-~nGk~ii~~~~~F-i--kP~~~l~~~~~elT~ITq~ml~n~~-~~~~vL~k 278 (1264) T TIGR01405 204 ATYVVFDIETTGLSPQYDEIIEFGAVKV-KNGKRIIDKFQFF-I--KPKEPLSAFVTELTGITQDMLENAP-EIEEVLEK 278 (1264) T ss_pred CEEEEEEEEECCCCCCCCCEEEEEEEEE-ECCCEEEEEHHHH-C--CCCCCCCCCEEEECCCCHHHHCCCC-CHHHHHHH T ss_conf 2079960351588886142467875887-4685762312323-2--8875467542662466479737984-17899999 Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089 Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471) Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471) T Consensus 279 ~~~f~~--d~ilVAHNGasFD~~Fl~~~~~k~~~~~~------~~p~IDTL~Lar~ln-------------P~y~sh~Lg 337 (1264) T TIGR01405 279 FKEFLK--DSILVAHNGASFDIGFLNTNFEKVGLEPL------ENPVIDTLELARALN-------------PEYKSHRLG 337 (1264) T ss_pred HHHHHC--CEEEEECCCCCCCHHHHHHHHHHCCCCCC------CCCCHHHHHHHHHHC-------------CCCCCCCCC T ss_conf 999769--75888627610366889889876277423------365113889999837-------------311344542 Q ss_pred HHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCC-----HHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 899871887643--10133318999999999986422689-99996238-----89899742001576079970101047 Q gi|254780661|r 162 DLALANGIEHVN--AHDAKADVYATLALVWLIREKKPKLF-EYLYDYRN-----KNQLRKLIDIQNMTPLVHVSGMFGAS 233 (471) Q Consensus 162 ~la~~n~i~~~~--aH~A~~D~~~t~~l~k~i~~~~p~~~-~~~l~~~~-----K~~v~~~l~~~~~~~~~~v~~~~~~~ 233 (471) T Consensus 338 ~~~~Kl~v~~~~e~~HRA~YDa~~t~~vF~~~~~~~~e~gGi~~l~~lni~e~~~l~~~~~y~r~~~~~~~-i~~kNq~G 416 (1264) T TIGR01405 338 EIAKKLGVDLDDERHHRADYDAEATAKVFIVMVEQLKEKGGITNLEELNIQELDKLSSEELYKRLRPNHII-ILVKNQAG 416 (1264) T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCHHHHHHCCCCEEE-EEEECCHH T ss_conf 23332055215330124334799999999999999875037211234057889842052345423745157-87763034 Q ss_pred CCCCEEE-EEEECCCCCCCEEEEEECCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCC-CCEEEEECCCCCEECCHHHCCH Q ss_conf 7875068-8630288877447871035687200079988999874065144202477-4305765367875437557031 Q gi|254780661|r 234 RSNTALI-APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPILMPIDYCKK 311 (471) Q Consensus 234 ~~~~~~v-~~~~~~p~~~n~~i~fDL~~Dp~~~l~l~~~el~~~l~~~~~~~~~~~~-~~lr~ik~Nk~Pil~~~~~~~~ 311 (471) T Consensus 417 LKnLykLvS~s~~~Yfy~~Pri~~s~L~~~~egLl~Gsac~~Gelf~a--~l~~~~~~e~e~iaK~YDfIei~Plg~y~~ 494 (1264) T TIGR01405 417 LKNLYKLVSISLTKYFYTRPRILRSLLKKYREGLLIGSACSEGELFDA--LLSKTQDDELEEIAKRYDFIEIQPLGNYAH 494 (1264) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEECCCCCCCHHHHH--HHCCCCHHHHHHHHHHCCEEEECCCCCHHH T ss_conf 788999987998653146897517889864387077177743227687--433885899999875447456278765078 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHCC------CCCCHHHHHHHHHHHCCCHHHHH Q ss_conf 345540358899999899976185468888744301334433320454102------46897662216889759988986 Q gi|254780661|r 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD------GFFADVDRQIMDRILRTAPEQLS 385 (471) Q Consensus 312 ~~~~~~~i~~~~l~~r~~~l~~n~~~~~~~~~~~~~~~~~~~~~~E~~IY~------gF~s~~Dk~~~~~fh~a~~~~k~ 385 (471) T Consensus 495 l~~~e~~~d~E~~~~~~~~li~~a~~lNK~Vv~tG~~hy~~---~~d~i~r~il~~s~G~~~~~nr~~~~k~~~~~~~~P 571 (1264) T TIGR01405 495 LIEKEQVKDKEALKEIIKKLIKLAKELNKPVVATGDVHYIE---PEDKIYRKILVASQGLENKLNRLANYKEDAREVYLP 571 (1264) T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC---HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 98613787777899999999999986197799967842178---678764531002778886547666665435533387 Q ss_pred HHHCCCCCHHHHHHHH--------HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH----HHHHCCCHHH Q ss_conf 2120489837999999--------996311810089999999999999750678889999999999----9651499889 Q gi|254780661|r 386 TLNLPFSDRRLPELFF--------RYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGK 453 (471) Q Consensus 386 ~i~~~f~D~Rl~~l~~--------R~i~~n~P~~Ls~~~~~~~~~~i~~rl~~~~i~~~~~ei~~l----~~~~~~d~~~ 453 (471) T Consensus 572 ~~~~rTT~EML~ef~fLgee~~~a~eiVveNtN~ia~~~e~~di~Pi~~~LytP~ieg~~e~~~~~~Y~~A~~iYGdpLP 651 (1264) T TIGR01405 572 ELHFRTTEEMLDEFSFLGEEKLLAREIVVENTNKIADQIEEDDIQPIKDKLYTPKIEGADEKIRDLTYEKAKKIYGDPLP 651 (1264) T ss_pred EEEEECHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH T ss_conf 05861648899998740464676644200360257755130586333788887800385278999999998974279856 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 9999999999997527 Q gi|254780661|r 454 EGLINALYEYLQWVIP 469 (471) Q Consensus 454 ~~iL~~l~~yl~~l~~ 469 (471) T Consensus 652 ~IVe~RieKEL~sII~ 667 (1264) T TIGR01405 652 EIVEQRIEKELKSIIG 667 (1264) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8999999987456540

HHsearch alignment for GI: 254780661 and conserved domain: TIGR01405