HHsearch alignment for GI: 254780661 and conserved domain: TIGR01407

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=100.00  E-value=8.4e-35  Score=242.45  Aligned_cols=168  Identities=25%  Similarity=0.343  Sum_probs=147.1

Q ss_pred             CEEEEECCCCCCCCCC-CEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf             3799975278898772-604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r    4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI   82 (471)
Q Consensus         4 ~~v~~D~ETtG~~~~~-~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i   82 (471)
T Consensus         1 rYaVVDLEtTg~~~~~~d~IIqiGiV~v-~DgeIv~~f~T~-V--NP~~~~pp~I~eLTGisd~~l~~AP-~F~qVA~~i   75 (944)
T TIGR01407         1 RYAVVDLETTGTDSSEFDKIIQIGIVLV-EDGEIVDTFATD-V--NPNEPIPPFIQELTGISDEQLKQAP-YFSQVAQEI   75 (944)
T ss_pred             CEEEEEEEECCCCCCCCCCEEEEEEEEE-ECCCEEEECCCC-C--CCCCCCCCHHHHHCCCCHHHHCCCC-CHHHHHHHH
T ss_conf             9689987416888645576689988998-558143201267-7--8898776114542287768640488-887999999


Q ss_pred             HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf             99951179659995055789999999998507853213256887100158888655565321002444445443310898
Q gi|254780661|r   83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD  162 (471)
Q Consensus        83 ~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~  162 (471)
T Consensus        76 ~~~l~--D~iFVAHN-V~FD~nfL~k~l~~~G~~~~------~~~~iDTVELa~i---f~PT----------~esY~Ls~  133 (944)
T TIGR01407        76 YDLLE--DGIFVAHN-VHFDLNFLAKELVDEGYEPL------EVPRIDTVELARI---FFPT----------EESYKLSE  133 (944)
T ss_pred             HHHHC--CCEEEEEC-HHCCHHHHHHHHHHCCCCCC------CCCCCHHHHHHHH---HCCC----------CCCCCCHH
T ss_conf             98742--97277610-15067899999985689743------4352005679987---4674----------43556148


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998718876431013331899999999998642268
Q gi|254780661|r  163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKL  198 (471)
Q Consensus       163 la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~  198 (471)
T Consensus       134 L~E~LGl~h~npH~AdSDA~~TAeLLLl~~~K~~~L  169 (944)
T TIGR01407       134 LSEELGLEHENPHRADSDAQVTAELLLLLEEKMKKL  169 (944)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999719871466761057899999999999998751