HHsearch alignment for GI: 254780661 and conserved domain: TIGR01407
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=100.00 E-value=8.4e-35 Score=242.45 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=147.1
Q ss_pred CEEEEECCCCCCCCCC-CEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 3799975278898772-604899999983897280400226621788877857898985799889960799979999999
Q gi|254780661|r 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~-~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471)
T Consensus 1 rYaVVDLEtTg~~~~~~d~IIqiGiV~v-~DgeIv~~f~T~-V--NP~~~~pp~I~eLTGisd~~l~~AP-~F~qVA~~i 75 (944)
T TIGR01407 1 RYAVVDLETTGTDSSEFDKIIQIGIVLV-EDGEIVDTFATD-V--NPNEPIPPFIQELTGISDEQLKQAP-YFSQVAQEI 75 (944)
T ss_pred CEEEEEEEECCCCCCCCCCEEEEEEEEE-ECCCEEEECCCC-C--CCCCCCCCHHHHHCCCCHHHHCCCC-CHHHHHHHH
T ss_conf 9689987416888645576689988998-558143201267-7--8898776114542287768640488-887999999
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 99951179659995055789999999998507853213256887100158888655565321002444445443310898
Q gi|254780661|r 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 (471)
Q Consensus 83 ~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~ 162 (471)
T Consensus 76 ~~~l~--D~iFVAHN-V~FD~nfL~k~l~~~G~~~~------~~~~iDTVELa~i---f~PT----------~esY~Ls~ 133 (944)
T TIGR01407 76 YDLLE--DGIFVAHN-VHFDLNFLAKELVDEGYEPL------EVPRIDTVELARI---FFPT----------EESYKLSE 133 (944)
T ss_pred HHHHC--CCEEEEEC-HHCCHHHHHHHHHHCCCCCC------CCCCCHHHHHHHH---HCCC----------CCCCCCHH
T ss_conf 98742--97277610-15067899999985689743------4352005679987---4674----------43556148
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998718876431013331899999999998642268
Q gi|254780661|r 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 163 la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
T Consensus 134 L~E~LGl~h~npH~AdSDA~~TAeLLLl~~~K~~~L 169 (944)
T TIGR01407 134 LSEELGLEHENPHRADSDAQVTAELLLLLEEKMKKL 169 (944)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999719871466761057899999999999998751