HHsearch alignment for GI: 254780661 and conserved domain: cd00007
>cd00007 35EXOc 3'-5' exonuclease. The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).
Probab=98.14 E-value=0.00012 Score=48.54 Aligned_cols=133 Identities=19% Similarity=0.140 Sum_probs=78.6
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf 37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83 (471)
Q Consensus 4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~ 83 (471)
T Consensus 1 ~~ia~D~Et~~l~~~~~~i~~iq-l~~~~~-----~~--y-i-~~~~~--~---------------------~~~~~~l~ 47 (155)
T cd00007 1 KEVAFDTETTGLNYHRGKLVGIQ-IATAGE-----AA--Y-I-PDELE--L---------------------EEDLEALK 47 (155)
T ss_pred CEEEEECCCCCCCCCCCCEEEEE-EEECCC-----EE--E-E-EECCC--C---------------------HHHHHHHH
T ss_conf 98999898799977888099999-998993-----59--9-9-81475--5---------------------24699999
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99511796599950557899999999985078532132568871001588886555653210024444454433108989
Q gi|254780661|r 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163 (471)
Q Consensus 84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l 163 (471)
T Consensus 48 ~~l~~~~i~Kv~hn-~k~D~~~L~~~~----~-------~~~~~~~Dt~iaa~ll---~~~----------~~~~~L~~l 102 (155)
T cd00007 48 ELLEDEDITKVGHD-AKFDLVVLARDG----I-------ELPGNIFDTMLAAYLL---NPG----------EGSHSLDDL 102 (155)
T ss_pred HHHHCCCCCEEEEC-CCHHHHHHHHCC----C-------CCCCCEEHHHHHHHHH---CCC----------CCCHHHHHH
T ss_conf 99829997389873-400099998628----6-------0135011499999984---778----------552369999
Q ss_pred HHHHC-CCCC--------------------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98718-8764--------------------3101333189999999999864
Q gi|254780661|r 164 ALANG-IEHV--------------------NAHDAKADVYATLALVWLIREK 194 (471)
Q Consensus 164 a~~n~-i~~~--------------------~aH~A~~D~~~t~~l~k~i~~~ 194 (471)
T Consensus 103 ~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~~~~YAa~D~~~~~~l~~~l~~~ 154 (155)
T cd00007 103 AKEYLGIELDKDEQIYGKGAKTFARPLSEELLEYAAEDADALLRLYEKLLEE 154 (155)
T ss_pred HHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998398767488861776544447998999999999999999999999965