HHsearch alignment for GI: 254780661 and conserved domain: cd05778

>cd05778 DNA_polB_zeta_exo The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=97.91  E-value=0.00013  Score=48.38  Aligned_cols=105  Identities=11%  Similarity=-0.021  Sum_probs=63.7

Q ss_pred             CEEEEECCCCC-----CCCCCCEEEEEEEEEECCCCEECC---EEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCH
Q ss_conf             37999752788-----987726048999999838972804---0022662178887785789898579988996079997
Q gi|254780661|r    4 HFVIYDYETFG-----RDVALDRPAQFAGVRVDRQWEKIE---STEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVE   75 (471)
Q Consensus         4 ~~v~~D~ETtG-----~~~~~~~iiq~~~i~~d~~~~~~~---~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~   75 (471)
T Consensus         5 tiLSfDIe~~sr~~~fPdP~~D~I~~I~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~~~~~~~~~~~~~~v~~~-~~E   81 (231)
T cd05778           5 TILSLEVHVNTRGDLLPDPEFDPISAIFYCIDDDVSPFILDANKVGVIIVD--ELKSNASNGRIRSGLSGIPVEVV-ESE   81 (231)
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEC--CCCCCHHHCCCCCCCCCCEEEEE-CCH
T ss_conf             899999998888999969897857899999626876544566520079955--86541121022257899649997-999


Q ss_pred             HHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHH
Q ss_conf             9999999999511796-59995055789999999998
Q gi|254780661|r   76 AEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFY  111 (471)
Q Consensus        76 ~e~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~  111 (471)
T Consensus        82 ~eLl~~f~~~v~~~DPDii~Gyni~~fd~~Yl~~Ra~  118 (231)
T cd05778          82 LELFEELIDLVRRFDPDILSGYEIQRSSWGYLIERAA  118 (231)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             9999999999997099989622556686189999999