HHsearch alignment for GI: 254780661 and conserved domain: cd06125

>cd06125 DnaQ_like_exo The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy or DEDDh exonucleases depending on the variation of motif
Probab=99.82  E-value=1.9e-19  Score=143.74  Aligned_cols=116  Identities=29%  Similarity=0.212  Sum_probs=97.0

Q ss_pred             EEEECCCCCCCC-CCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999752788987-7260489999998389728040022662178887785789898579988996079997999999999
Q gi|254780661|r    6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQ   84 (471)
Q Consensus         6 v~~D~ETtG~~~-~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~~   84 (471)
T Consensus         1 Vv~D~ETTGl~~~~~d~Iiei~~v~~~~-~---~~~~~-~v--~p~~~i~~~~~~i~gi~~~~v~~~p-~~~~~~~~~~~   72 (130)
T cd06125           1 VAFDIETTGLNGNARDEIIEIALVVVHI-G---EKFVF-DV--KPDDLIDPYAFTISGITDEVVERAA-TEAELLIELLA   72 (130)
T ss_pred             CEEEEECCCCCCCCCCEEEEEEEEEEEC-C---CEEEE-EE--CCCCCCCHHHHHCCCCCHHHHHHHH-HHHHHHHHHHH
T ss_conf             9898018996999998589999999718-9---88999-97--9999899779410375999983306-08999999999


Q ss_pred             HHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             95117965999505578999999999850785321325688710015888
Q gi|254780661|r   85 FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV  134 (471)
Q Consensus        85 ~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~  134 (471)
T Consensus        73 f~~~~~~ilVgHN~-~FD~~fL~~~~~r~g~~~~----~~~~~~iDTl~l  117 (130)
T cd06125          73 FLRDKDDILVGHNI-SFDLPYLLNRAAELGIPYP----ILGRIVFDTLAL  117 (130)
T ss_pred             HHCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCC----CCCCCEEECHHH
T ss_conf             97699999999194-7749999999998499998----789968686098