HHsearch alignment for GI: 254780661 and conserved domain: cd06140

>cd06140 DNA_polA_I_Bacillus_like_exo Bacillus stearothermophilus-like Polymerase I (pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases.
Probab=97.57  E-value=0.006  Score=37.71  Aligned_cols=137  Identities=14%  Similarity=0.071  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf             88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r    2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR   81 (471)
Q Consensus         2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~   81 (471)
T Consensus         2 ~~~~~av~~e~~~~~~~~~~i~gi~l~-~-~-~----~--~~yi~~-~~~------~------------------~~~~~   47 (178)
T cd06140           2 LADEVALYVELLGENYHTADIIGLALA-N-G-G----G--AYYIPL-ELA------L------------------LDLAA   47 (178)
T ss_pred             CCCCEEEEEECCCCCCCCCEEEEEEEE-E-C-C----E--EEEEEC-CCC------H------------------HHHHH
T ss_conf             888669997379998453549999998-8-9-9----7--999956-673------6------------------46999


Q ss_pred             HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf             99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r   82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ  161 (471)
Q Consensus        82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~  161 (471)
T Consensus        48 lk~~l~d~~i~Ki~hn-~K~~~~~L~~----~Gi~l-------~g~~fDtmiaa---yLl~p~----------~~~~~L~  102 (178)
T cd06140          48 LKEWLEDEKIPKVGHD-AKRAYVALKR----HGIEL-------AGVAFDTMLAA---YLLDPT----------RSSYDLA  102 (178)
T ss_pred             HHHHHCCCCCCEEEEC-HHHHHHHHHH----CCCCC-------CCCHHHHHHHH---HHHCCC----------CCCCCHH
T ss_conf             9999729999889865-7999999998----89806-------88303688898---875489----------7779999


Q ss_pred             HHHHHHCC-CCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89987188-7643-------------------101333189999999999864226
Q gi|254780661|r  162 DLALANGI-EHVN-------------------AHDAKADVYATLALVWLIREKKPK  197 (471)
Q Consensus       162 ~la~~n~i-~~~~-------------------aH~A~~D~~~t~~l~k~i~~~~p~  197 (471)
T Consensus       103 ~L~~~yl~~~~~~~~~~~gk~~~~~~~~~~~~~~ya~~~a~~~~~L~~~l~~~L~e  158 (178)
T cd06140         103 DLAKRYLGRELPSDEEVYGKGAKFAVPDEEVLAEHLARKAAAILRLAPKLEEELEE  158 (178)
T ss_pred             HHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999828666547886176656243997999999999999999999999999998