HHsearch alignment for GI: 254780661 and conserved domain: pfam08411
>pfam08411 Exonuc_X-T_C Exonuclease C-terminal. This bacterial domain is found at the C-terminus of Exodeoxyribonuclease I/Exonuclease I (pfam00929), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in E. coli is associated with DNA deoxyribophosphodiesterase (dRPase).
Probab=100.00 E-value=0 Score=399.67 Aligned_cols=261 Identities=50% Similarity=0.886 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCHHCCCCHHHHHHHHHCCHHHH-
Q ss_conf 3889899742001576079970101047787506886302888774478710356872000799889998740651442-
Q gi|254780661|r 206 RNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL- 284 (471)
Q Consensus 206 ~~K~~v~~~l~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~p~~~n~~i~fDL~~Dp~~~l~l~~~el~~~l~~~~~~~- 284 (471)
T Consensus 1 R~K~~v~~lid~~~~~P~vhvSg~~~a~~~~~s~v~Pla~HP~N~N~vI~~DL~~Dp~~ll~l~~e~lr~rlft~~~~l~ 80 (268)
T pfam08411 1 RSKKAVAKLIDLVAMKPLVHVSGMFGAERGCTSWVLPLAWHPTNKNAVIVCDLAQDPSPLLDLSAEELRQRLYTKREDLA 80 (268)
T ss_pred CCHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHHHCCCHHHCC
T ss_conf 97889999858278996698768664114883788751358999886798886549099876999999999557642212
Q ss_pred HCCCCCCEEEEECCCCCEECCHHHCCHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCC-CCCCCCCHHHHHCCC
Q ss_conf 0247743057653678754375570313455403588999998999761854688887443013-344333204541024
Q gi|254780661|r 285 KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDG 363 (471)
Q Consensus 285 ~~~~~~~lr~ik~Nk~Pil~~~~~~~~~~~~~~~i~~~~l~~r~~~l~~n~~~~~~~~~~~~~~-~~~~~~~~E~~IY~g 363 (471)
T Consensus 81 ~~~~r~plk~I~lNkcPilap~~~L~~~~a~rL~iD~~~~~~~~~~l~~~~~l~~kl~~v~~~~~~~~~~~DvD~~LY~G 160 (268)
T pfam08411 81 EGELRVPLKLVHLNKCPILAPAKTLRPEDAERLGIDREQCLKNLALLRQNPELREKLKEVFEEEREFPPSTDVDQQLYDG 160 (268)
T ss_pred CCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCC
T ss_conf 44667773365516898327655469888988489899999999999869899999999981755788878878998725
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHHH
Q ss_conf 68976622168897599889862120489837999999996311810089999999999999750678-----8899999
Q gi|254780661|r 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKN 438 (471)
Q Consensus 364 F~s~~Dk~~~~~fh~a~~~~k~~i~~~f~D~Rl~~l~~R~i~~n~P~~Ls~~~~~~~~~~i~~rl~~~-----~i~~~~~ 438 (471)
T Consensus 161 F~s~~Dk~~~~~ir~~~p~~L~~~~~~F~D~RL~eLlfRyrARn~P~tLs~~E~~~W~~~~~~rL~~~~~~~ltl~~y~~ 240 (268)
T pfam08411 161 FFSDADKRLMEIIRETSPEQLAELELNFDDKRLPELLFRYRARNFPETLSEEEQQRWQEYCQQRLLDPAGGALTLEDYEQ 240 (268)
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 48878999999998099999963758888710999999999961820099999999999999980078988767999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999965149988999999999999975
Q gi|254780661|r 439 KLQSLSGEYKGDEGKEGLINALYEYLQWV 467 (471)
Q Consensus 439 ei~~l~~~~~~d~~~~~iL~~l~~yl~~l 467 (471)
T Consensus 241 ~i~~L~~~~~~~-~k~~lL~~L~~Y~~~l 268 (268)
T pfam08411 241 KLEQLAAEYSDD-EKQALLQALYDYAQSL 268 (268)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHHHHC
T ss_conf 999998647876-8999999999999839