HHsearch alignment for GI: 254780661 and conserved domain: pfam10108
>pfam10108 Exon_PolB Predicted 3'-5' exonuclease related to the exonuclease domain of PolB. This domain is found in various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Probab=98.23 E-value=3.2e-05 Score=52.29 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=80.4
Q ss_pred CCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 87726048999999838972804002266217888778578989857998899607999799999999995117965999
Q gi|254780661|r 16 DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95 (471)
Q Consensus 16 ~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~~~~~~~~~~~ig 95 (471)
T Consensus 5 p~~lhriVaIs~v~~~~~~~~--~v~sl------------------g-------~~~~~E~~ll~~F~~~i~~~~P~LVs 57 (211)
T pfam10108 5 PLPLHRIVAISAVIADDDGGF--KVWSL------------------G-------DPESSEKELIQRFFDGIEKYTPQLVS 57 (211)
T ss_pred CCCCEEEEEEEEEEEECCCCE--EEEEC------------------C-------CCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 756501699999999669927--99878------------------8-------99989999999999999843982886
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCCCCCC------C-------CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 50557899999999985078532132568------8-------7100158888655565321002444445443310898
Q gi|254780661|r 96 YNNIRFDDYYSRNIFYRNFYDSYRWSWDN------G-------NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162 (471)
Q Consensus 96 ~N~~~FD~~~lr~~~~r~~~~~y~~~~~~------~-------~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~ 162 (471)
T Consensus 58 ~NG~gFDlPvL~~RAl~~gi~ap~~~~~~~~~~kw~nY~~Ry~~~H~DLmd~l~~~--------------g~~~~~~Ld~ 123 (211)
T pfam10108 58 FNGRGFDLPVLHYRALKHGVSAPRYFDTGDRDFKWNNYFNRYSTRHLDLMDLLSGY--------------GARANAPLDE 123 (211)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHC--------------CCCCCCCHHH
T ss_conf 56865548999999998188850787567876654441123565445489998732--------------8867789899
Q ss_pred HHHHHCCCCC
Q ss_conf 9987188764
Q gi|254780661|r 163 LALANGIEHV 172 (471)
Q Consensus 163 la~~n~i~~~ 172 (471)
T Consensus 124 ~a~l~G~PGK 133 (211)
T pfam10108 124 VAALLGLPGK 133 (211)
T ss_pred HHHHCCCCCC
T ss_conf 9998199987