HHsearch alignment for GI: 254780661 and conserved domain: smart00486
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=98.01 E-value=0.00042 Score=45.10 Aligned_cols=164 Identities=19% Similarity=0.106 Sum_probs=97.0
Q ss_pred CCCCEEEEECCCCCCC-----C--CCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCC
Q ss_conf 9883799975278898-----7--72604899999983897280400226621788877857898985799889960799
Q gi|254780661|r 1 MTNHFVIYDYETFGRD-----V--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGV 73 (471)
Q Consensus 1 m~~~~v~~D~ETtG~~-----~--~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~ 73 (471)
T Consensus 1 ~~~~i~s~DIEt~~~~~~~p~~~~~~d~i~~i~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~---~~~~~- 67 (471)
T smart00486 1 PPLKILSFDIETYTDGGLFPDPLIFEDEIIQISLVINDGDKKGPEERICFT--LGTCK-------EIDGVE---VYEFN- 67 (471)
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEEEC--CCCCC-------CCCCCE---EEECC-
T ss_conf 994699999896679999999888998499999998219878788775430--36767-------789988---99809-
Q ss_pred CHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCCC---------------------------CCCCC
Q ss_conf 979999999999511796-59995055789999999998507853213---------------------------25688
Q gi|254780661|r 74 VEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRW---------------------------SWDNG 125 (471)
Q Consensus 74 ~~~e~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~~---------------------------~~~~~ 125 (471)
T Consensus 68 ~E~~ll~~f~~~i~~~dpdii~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 147 (471)
T smart00486 68 NEKELLKAFLEFIKKYDPDIIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKG 147 (471)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEE
T ss_conf 99999999999998719999996588787689999999984896477637357787643203321012566314899855
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCC---------------------CCHHHHHHHHH
Q ss_conf 710015888865556532100244444544331089899871887643---------------------10133318999
Q gi|254780661|r 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN---------------------AHDAKADVYAT 184 (471)
Q Consensus 126 ~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n~i~~~~---------------------aH~A~~D~~~t 184 (471)
T Consensus 148 ~~~~D~~~~~~~~~--------------~l~sy~L~~v~~~~l~~~k~d~~~~~i~~~~~~~~~~~~~~~~Y~~~D~~l~ 213 (471)
T smart00486 148 RLVIDLYNLYKNKL--------------KLPSYKLDTVAEYLLGKEKDDLPYKDIPELYNLNYKLRDELLEYCIQDAVLT 213 (471)
T ss_pred EEEEEHHHHHHHHH--------------CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99978899998860--------------4466888999999957788889989999998539367999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780661|r 185 LALVWLI 191 (471)
Q Consensus 185 ~~l~k~i 191 (471)
T Consensus 214 ~~l~~~~ 220 (471)
T smart00486 214 LKLFNKL 220 (471)
T ss_pred HHHHHHH
T ss_conf 9999986