HHsearch results for GI: 254780661 and protein with PDBid: 1s5j_A
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.43 E-value=0.00086 Score=41.71 Aligned_cols=167 Identities=20% Similarity=0.146 Sum_probs=84.9
Q ss_pred CEEEEECCCC----CC--CCCCC--EEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCH
Q ss_conf 3799975278----89--87726--0489999998389728040022662178887785789898579988996079997
Q gi|254780661|r 4 HFVIYDYETF----GR--DVALD--RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVE 75 (471)
Q Consensus 4 ~~v~~D~ETt----G~--~~~~~--~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~ 75 (471)
..+-||+||. |. +|..+ .||++|.. +.++.. .+.++ .+ .... . ....+-|++ +..- .+|
T Consensus 191 rilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~--~~~~~~--~~~~~-~~--~~~~-~-~~~~~~~~~---v~~f-~sE 257 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--GSDGLK--KVLVL-NR--NDVN-E-GSVKLDGIS---VERF-NTE 257 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--ETTSCE--EEEEE-CS--SCCC-C-CCEEETTEE---EEEE-SSH
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE--ECCCCE--EEEEE-EC--CCCC-C-CCCCCCCCE---EEEE-CCH
T ss_conf 499999887888889998943477428999999--568998--99998-16--7777-6-654579958---9998-989
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 999999999951179659995055789999999998507853213256---------88710015888865556532100
Q gi|254780661|r 76 AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD---------NGNSRWDLLDVMRAIYAFSPDGI 146 (471)
Q Consensus 76 ~e~~~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~---------~~~~~~D~l~~~~~~~~~~p~~~ 146 (471)
.+++..+.+++.++ .+++|||+.+||.++|..=.-+.+..+...... .+...+|+...+..- ..
T Consensus 258 keLL~~F~~~i~dp-DII~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d------~~ 330 (847)
T 1s5j_A 258 YELLGRFFDILLEY-PIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNK------AV 330 (847)
T ss_dssp HHHHHHHHHHHTTC-SEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSH------HH
T ss_pred HHHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHH------HH
T ss_conf 99999999742289-979883105665899999999809983204253057323578620688653357598------99
Q ss_pred CCCCCCCCCCCCCHHHHHHH-HCCCCCC-------------CCHHHHHHHHHHHHHHH
Q ss_conf 24444454433108989987-1887643-------------10133318999999999
Q gi|254780661|r 147 QWPSRDDGATSFKLQDLALA-NGIEHVN-------------AHDAKADVYATLALVWL 190 (471)
Q Consensus 147 ~~~~~~~~~~~~kL~~la~~-n~i~~~~-------------aH~A~~D~~~t~~l~k~ 190 (471)
..-.....-+||+|+.+|+. .|..-.+ +.-.+.||..+..|..+
T Consensus 331 ~~~~~~~~l~sy~L~~Va~~~Lg~~K~~~~~~~~~~d~~~l~~Y~~~D~~l~~~L~~~ 388 (847)
T 1s5j_A 331 RNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTF 388 (847)
T ss_dssp HHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987641302077999999983888422222020100688988875556888899987