HHsearch results for GI: 254780661 and protein with PDBid: 1yt3_A
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.20 E-value=0.011 Score=34.64 Aligned_cols=133 Identities=15% Similarity=0.039 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCCCCCCCCEE--EEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHH
Q ss_conf 883799975278898772604--899999983897280400226621788877857898985799889960799979999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~i--iq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~ 79 (471)
....|.+|+||+|.++.++++ ||+| +.+. . +.+ +|-+ +. . +
T Consensus 21 ~~~~ia~DtE~~~~~ty~~~l~LiQi~----~~~~-----~--~li--------D~l~-----~~-------~------~ 63 (375)
T 1yt3_A 21 AFPAIALDTEFVRTRTYYPQLGLIQLF----DGEH-----L--ALI--------DPLG-----IT-------D------W 63 (375)
T ss_dssp TSSEEEEEEEEECCSCSSCEEEEEEEE----CSSC-----E--EEE--------CGGG-----CS-------C------C
T ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEE----ECCE-----E--EEE--------ECCC-----CC-------C------H
T ss_conf 799089979848988888878999987----6892-----7--999--------6589-----87-------7------8
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999951179659995055789999999998507853213256887100158888655565321002444445443310
Q gi|254780661|r 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK 159 (471)
Q Consensus 80 ~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~k 159 (471)
..+.+.|.+++.+.|||| ..||..+|++.+ +.. ....+|+.-..+.+ . ...+++
T Consensus 64 ~~L~~ll~~~~i~kv~h~-~~~D~~~L~~~~---~~~--------~~~~fDt~ia~~~~---~-----------~~~~~~ 117 (375)
T 1yt3_A 64 SPLKAILRDPSITKFLHA-GSEDLEVFLNVF---GEL--------PQPLIDTQILAAFC---G-----------RPMSWG 117 (375)
T ss_dssp HHHHHHHHCTTSEEEESS-CHHHHHHHHHHH---SSC--------CSSEEEHHHHHHHT---T-----------CCTTCC
T ss_pred HHHHHHHHCCCCEEEEEC-HHHHHHHHHHHC---CCC--------CCCEEECHHHHHHH---C-----------CCCHHH
T ss_conf 999999819886199725-586799999964---988--------88716638889883---8-----------750678
Q ss_pred HHHHHHH-HCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989987-1887643----------------101333189999999999864226
Q gi|254780661|r 160 LQDLALA-NGIEHVN----------------AHDAKADVYATLALVWLIREKKPK 197 (471)
Q Consensus 160 L~~la~~-n~i~~~~----------------aH~A~~D~~~t~~l~k~i~~~~p~ 197 (471)
|..+++. .|+..+. -+=|..||..+..|...+..+...
T Consensus 118 l~~l~~~~l~~~l~K~~~~sdW~~rPLs~~ql~YAa~Dv~~l~~l~~~l~~~L~~ 172 (375)
T 1yt3_A 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp HHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHH
T ss_conf 8899999864503305545222566687899999840732379999999987763