HHsearch results for GI: 254780661 and protein with PDBid: 1zbh_A
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.91 E-value=1.4e-22 Score=162.49 Aligned_cols=171 Identities=11% Similarity=0.108 Sum_probs=128.2
Q ss_pred CCEEEEECCCC---CCCCC-CCEEEEEEEEEEC-CCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf 83799975278---89877-2604899999983-8972804002266217888778578989857998899607999799
Q gi|254780661|r 3 NHFVIYDYETF---GRDVA-LDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE 77 (471)
Q Consensus 3 ~~~v~~D~ETt---G~~~~-~~~iiq~~~i~~d-~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e 77 (471)
+.||++|+||| |..+. .++|||||||++| .+++++++|+. +|+|......++++..+||||++++.+++ ++.+
T Consensus 78 ~~~vv~D~EtTc~~~~~~~~~~EIIEIgaV~vd~~~~~i~d~F~~-~VkP~~~~~ls~~~~~lTGIT~e~V~~Ap-~f~e 155 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQ-YVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 155 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEE-EBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE-EECCCCCCCCCHHHHHHCCCCHHHHHCCC-CHHH
T ss_conf 989999985368899988899748999889998568759658999-99989898679889885194899974678-7999
Q ss_pred HHHHHHHHHHCCC-----CEEEEEECHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999951179-----65999505578999-99999985078532132568871001588886555653210024444
Q gi|254780661|r 78 FSRRIHQFFSVPN-----TCIIGYNNIRFDDY-YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151 (471)
Q Consensus 78 ~~~~i~~~~~~~~-----~~~ig~N~~~FD~~-~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~ 151 (471)
+++++.+++.... .+.+..+ ..||.. ||+..+.+..++...+ .+..+|+..+.+..+ .
T Consensus 156 vl~~f~~~l~~~~~~~~~~~~~~~~-g~~D~~~fL~~~~~~~~i~~p~~----~~~~iDl~~~~~~~~-------~---- 219 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTD-GSWDMSKFLNIQCQLSRLKYPPF----AKKWINIRKSYGNFY-------K---- 219 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEES-SSHHHHTHHHHHHHHTTBCCCGG----GSEEEEHHHHHHHHH-------T----
T ss_pred HHHHHHHHHCCCCCCCCCCEEEECC-CHHHHHHHHHHHHHHHCCCCCCC----CCCEEEHHHHHHHHH-------C----
T ss_conf 9999999970584024662577505-07669999999999708998743----574776999999984-------6----
Q ss_pred CCCCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 454433108989987188764-31013331899999999998
Q gi|254780661|r 152 DDGATSFKLQDLALANGIEHV-NAHDAKADVYATLALVWLIR 192 (471)
Q Consensus 152 ~~~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k~i~ 192 (471)
.+..+++|+.+++..||+.. .+|+|+.||.+|+.|+..+.
T Consensus 220 -~~~~~~~L~~l~~~~gi~~~G~~H~AldDA~~tA~Il~klL 260 (299)
T 1zbh_A 220 -VPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRML 260 (299)
T ss_dssp -CCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -87568799999998699989987283999999999999999