HHsearch results for GI: 254780661 and protein with PDBid: 1zbh_A

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.91  E-value=1.4e-22  Score=162.49  Aligned_cols=171  Identities=11%  Similarity=0.108  Sum_probs=128.2

Q ss_pred             CCEEEEECCCC---CCCCC-CCEEEEEEEEEEC-CCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
Q ss_conf             83799975278---89877-2604899999983-8972804002266217888778578989857998899607999799
Q gi|254780661|r    3 NHFVIYDYETF---GRDVA-LDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAE   77 (471)
Q Consensus         3 ~~~v~~D~ETt---G~~~~-~~~iiq~~~i~~d-~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e   77 (471)
                      +.||++|+|||   |..+. .++|||||||++| .+++++++|+. +|+|......++++..+||||++++.+++ ++.+
T Consensus        78 ~~~vv~D~EtTc~~~~~~~~~~EIIEIgaV~vd~~~~~i~d~F~~-~VkP~~~~~ls~~~~~lTGIT~e~V~~Ap-~f~e  155 (299)
T 1zbh_A           78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQ-YVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ  155 (299)
T ss_dssp             SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEE-EBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHH
T ss_pred             CEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE-EECCCCCCCCCHHHHHHCCCCHHHHHCCC-CHHH
T ss_conf             989999985368899988899748999889998568759658999-99989898679889885194899974678-7999


Q ss_pred             HHHHHHHHHHCCC-----CEEEEEECHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             9999999951179-----65999505578999-99999985078532132568871001588886555653210024444
Q gi|254780661|r   78 FSRRIHQFFSVPN-----TCIIGYNNIRFDDY-YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR  151 (471)
Q Consensus        78 ~~~~i~~~~~~~~-----~~~ig~N~~~FD~~-~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~  151 (471)
                      +++++.+++....     .+.+..+ ..||.. ||+..+.+..++...+    .+..+|+..+.+..+       .    
T Consensus       156 vl~~f~~~l~~~~~~~~~~~~~~~~-g~~D~~~fL~~~~~~~~i~~p~~----~~~~iDl~~~~~~~~-------~----  219 (299)
T 1zbh_A          156 VLKKVIDLMKLKELGTKYKYSLLTD-GSWDMSKFLNIQCQLSRLKYPPF----AKKWINIRKSYGNFY-------K----  219 (299)
T ss_dssp             HHHHHHHHHHHTTBTTTBCEEEEES-SSHHHHTHHHHHHHHTTBCCCGG----GSEEEEHHHHHHHHH-------T----
T ss_pred             HHHHHHHHHCCCCCCCCCCEEEECC-CHHHHHHHHHHHHHHHCCCCCCC----CCCEEEHHHHHHHHH-------C----
T ss_conf             9999999970584024662577505-07669999999999708998743----574776999999984-------6----


Q ss_pred             CCCCCCCCHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             454433108989987188764-31013331899999999998
Q gi|254780661|r  152 DDGATSFKLQDLALANGIEHV-NAHDAKADVYATLALVWLIR  192 (471)
Q Consensus       152 ~~~~~~~kL~~la~~n~i~~~-~aH~A~~D~~~t~~l~k~i~  192 (471)
                       .+..+++|+.+++..||+.. .+|+|+.||.+|+.|+..+.
T Consensus       220 -~~~~~~~L~~l~~~~gi~~~G~~H~AldDA~~tA~Il~klL  260 (299)
T 1zbh_A          220 -VPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRML  260 (299)
T ss_dssp             -CCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             -87568799999998699989987283999999999999999