HHsearch results for GI: 254780661 and protein with PDBid: 2d5r_A
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.71 E-value=1.6e-06 Score=59.32 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=115.5
Q ss_pred CCEEEEECCCCCCCCC-----CC----------------EEEEEEEEEECCCCEECC-----EEEEEEECCCCCCCCCHH
Q ss_conf 8379997527889877-----26----------------048999999838972804-----002266217888778578
Q gi|254780661|r 3 NHFVIYDYETFGRDVA-----LD----------------RPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPE 56 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~-----~~----------------~iiq~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~p~p~ 56 (471)
-.||-.|+|-||+-.. .+ +|||+|.-..+.+++... +|+ +..-+..+. -+++
T Consensus 24 ~~fvAiDtEfpGl~~~~~~~~~~~~~~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~~~~~~~w~FN-f~f~~~~d~-~~~~ 101 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFN-FKFNLTEDM-YAQD 101 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEE-BCCCTTTSC-CCHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEE-EEECCCCCC-CCHH
T ss_conf 99899986706845788765579989999999987754030378989862478778886127799-877797665-3778
Q ss_pred H---HHHHCCCHHHHHHCCCCHHHHHHHHHHHH--HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 9---89857998899607999799999999995--117965999505578999999999850785321325688710015
Q gi|254780661|r 57 A---VFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131 (471)
Q Consensus 57 a---~~v~git~~~~~~~~~~~~e~~~~i~~~~--~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~ 131 (471)
+ +.-+|+.=..+.+.|.+..++...+...- ...+..+|+||+ .||..+|-+.++..-+|. ...+.
T Consensus 102 Si~fL~~~GfDF~k~~~~GI~~~~f~ell~~s~~~~~~~v~wv~f~g-~yD~~~L~k~l~g~~LP~---------~~~~F 171 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPE---------EELDF 171 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSC-HHHHHHHHHHHHTSCCCS---------SHHHH
T ss_pred HHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHCCCCCCC---------CHHHH
T ss_conf 99999986997789998097389999988861143258973787134-578999999980999997---------78999
Q ss_pred HHHHHHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888655565321002444--44544331089899871887-6431013331899999999998642
Q gi|254780661|r 132 LDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 132 l~~~~~~~~~~p~~~~~~~--~~~~~~~~kL~~la~~n~i~-~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
+.+ +..+.|..+..-. ..-+.-+-.|+.+|+..|+. .+.+|.|-+|+..|..++-.+++..
T Consensus 172 ~~~---~~~~Fp~~yD~K~i~~~~~~~~~~L~~la~~L~v~r~g~~H~AG~DSllT~~~F~~l~~~~ 235 (252)
T 2d5r_A 172 FEI---LRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HHH---HHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHH---HHHHCCHHEEHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999---9997734604698984456657649999997699987987653678999999999999997