HHsearch results for GI: 254780661 and protein with PDBid: 2f96_A
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PSI, MCSG, protein structure initiative; 2.09A {Pseudomonas aeruginosa PAO1} SCOP: c.55.3.5
Probab=99.94 E-value=3.4e-25 Score=179.33 Aligned_cols=174 Identities=22% Similarity=0.172 Sum_probs=131.9
Q ss_pred EEEECCCCCCCCCCCEEEEEEEEEE--CCCCEECCEEE-EEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 9997527889877260489999998--38972804002-26621788877857898985799889960799979999999
Q gi|254780661|r 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQWEKIESTE-VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82 (471)
Q Consensus 6 v~~D~ETtG~~~~~~~iiq~~~i~~--d~~~~~~~~~~-~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i 82 (471)
|++|+||||++|..|+|||||||++ |.++++++... ...++|.+...++++++.+|||+++++...+....+.+.+.
T Consensus 32 Vv~D~ETTGl~~~~d~IIeIgAV~v~~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (224)
T 2f96_A 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEI 111 (224)
T ss_dssp EEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEECCEEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHH
T ss_conf 79998689989878846899999998524782610124668736866778985036512101256554032103779999
Q ss_pred H----HHHHCC--CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9----995117--9659995055789999999998507853213256887100158888655565321002444445443
Q gi|254780661|r 83 H----QFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156 (471)
Q Consensus 83 ~----~~~~~~--~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~ 156 (471)
. +++..+ +..++++|+..||..++++.+.+++++... ...+|.+...+..+.. .+
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~n~~fd~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-------------~~ 172 (224)
T 2f96_A 112 FRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNP------FHPFSSFDTATLAGLA-------------YG 172 (224)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCC------EEEEEEEEHHHHHHHH-------------HS
T ss_pred HHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC------CCHHHHHHHHHHHHHH-------------CC
T ss_conf 9999988764045543221534788999999999981999886------4113589999998754-------------79
Q ss_pred CCCHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 310898998718876--431013331899999999998642268
Q gi|254780661|r 157 SFKLQDLALANGIEH--VNAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 157 ~~kL~~la~~n~i~~--~~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
.++|+.+|.++||+. .+||+|++||.+|++|+.+|.++.+.+
T Consensus 173 ~~~L~~l~~~~gi~~~~~~aH~Al~Da~~ta~l~~kl~~~~~~~ 216 (224)
T 2f96_A 173 QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEM 216 (224)
T ss_dssp CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64399999982999998976788999999999999999999981