HHsearch results for GI: 254780661 and protein with PDBid: 2gui_A
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
Probab=99.94 E-value=3.8e-25 Score=178.97 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=138.4
Q ss_pred CCCEEEEECCCCCCCCC-----CCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 88379997527889877-----2604899999983897280400226621788877857898985799889960799979
Q gi|254780661|r 2 TNHFVIYDYETFGRDVA-----LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEA 76 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~-----~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~ 76 (471)
|..|||||+||||+++. .|+|||+|+|+++.+..+.++++. +|+|. ..+.+.+..+|||+++++..++ +..
T Consensus 8 ~~r~vv~D~ETTGl~~~~~~~~~drIieigav~~~~~~~~~~~~~~-~v~P~--~~~~~~~~~i~gi~~e~~~~~~-~~~ 83 (194)
T 2gui_A 8 ITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHV-YLKPD--RLVDPEAFGVHGIADEFLLDKP-TFA 83 (194)
T ss_dssp CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEE-ECCCS--SCCCHHHHHHHCCCHHHHTTSC-CHH
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCEEECEEEEE-EECCC--CCCCHHHHHHHCCCHHHHHHHH-HHH
T ss_conf 8837999973799987645678954999999999999997407899-98999--8655778987075576643345-589
Q ss_pred HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999951179659995055789999999998507853213256887100158888655565321002444445443
Q gi|254780661|r 77 EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156 (471)
Q Consensus 77 e~~~~i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~ 156 (471)
+++.++.+++. +..+|||| ..||..+++..+.+.+++..... ..+...|.+.+.+.. +|+ +
T Consensus 84 ~v~~~~~~~l~--~~~~v~~~-~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~---~p~-----------~ 144 (194)
T 2gui_A 84 EVADEFMDYIR--GAELVIHN-AAFDIGFMDYEFSLLKRDIPKTN--TFCKVTDSLAVARKM---FPG-----------K 144 (194)
T ss_dssp HHHHHHHHHHT--TSEEEETT-HHHHHHHHHHHHHHTCSCCCCGG--GTSEEEEHHHHHHHH---STT-----------S
T ss_pred HHHHHHHHHHC--CCEEEEEC-CCCCHHHHHHHHHHHCCCCCCCC--CCCCCEEHHHHHHHH---CCC-----------C
T ss_conf 98899998708--97389978-51319999999998099976555--442000199999997---489-----------8
Q ss_pred CCCHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3108989987188764--31013331899999999998642268
Q gi|254780661|r 157 SFKLQDLALANGIEHV--NAHDAKADVYATLALVWLIREKKPKL 198 (471)
Q Consensus 157 ~~kL~~la~~n~i~~~--~aH~A~~D~~~t~~l~k~i~~~~p~~ 198 (471)
+++|+.+|..+|+... ++|+|++||.+|++|+..+..+...+
T Consensus 145 ~~~L~~l~~~~~i~~~~~~~H~Al~Da~~t~~l~~~m~~~~~~~ 188 (194)
T 2gui_A 145 RNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 188 (194)
T ss_dssp CCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-----
T ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 78899999985999899987488999999999999997785533