HHsearch results for GI: 254780661 and protein with PDBid: 2gv9_A
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B*
Probab=98.75 E-value=3.5e-07 Score=63.50 Aligned_cols=171 Identities=18% Similarity=0.147 Sum_probs=99.4
Q ss_pred CEEEEECCCCC---C-----CC--CCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHH--HHHHCCCHHHHHHC
Q ss_conf 37999752788---9-----87--7260489999998389728040022662178887785789--89857998899607
Q gi|254780661|r 4 HFVIYDYETFG---R-----DV--ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--VFITGITPQKALRD 71 (471)
Q Consensus 4 ~~v~~D~ETtG---~-----~~--~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a--~~v~git~~~~~~~ 71 (471)
..+-||+||.+ . ++ ..|.|+||+.+....+........ +++. .....|.... ..-.++....+..-
T Consensus 321 rvlsfDIE~~s~~~~~~~FP~a~~~~D~Ii~IS~~~~~~g~~~~~~~~-l~tl-~~~~~~~~~~~~~~~~~~~~~~V~~f 398 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVL-LFSL-GSCDLPESHLNELAARGLPTPVVLEF 398 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEE-EEEE-SCCCCCHHHHHHHHHTTCCCCEEEEE
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEE-EEEC-CCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 799998786779888888989888898289999999876887664599-9944-77555533223444457898679980
Q ss_pred CCCHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCC---CC----------------------CCCCCC
Q ss_conf 99979999999999511796-59995055789999999998507853---21----------------------325688
Q gi|254780661|r 72 GVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDS---YR----------------------WSWDNG 125 (471)
Q Consensus 72 ~~~~~e~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~---y~----------------------~~~~~~ 125 (471)
+ +|.+++..+.+++.+.++ +++|||+.+||.++|-.=.-+..... +. .....|
T Consensus 399 ~-sE~eLL~~F~~~i~~~dPDIItGYNi~~FDlpYL~~Ra~~l~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~i~G 477 (1193)
T 2gv9_A 399 D-SEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNG 477 (1193)
T ss_dssp S-SHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETT
T ss_pred C-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCEEEECC
T ss_conf 9-999999999999765399889972554774789999999977998788275576566202035666556540462346
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC------CC---------C------CHHHHHHHHH
Q ss_conf 7100158888655565321002444445443310898998718876------43---------1------0133318999
Q gi|254780661|r 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH------VN---------A------HDAKADVYAT 184 (471)
Q Consensus 126 ~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n~i~~------~~---------a------H~A~~D~~~t 184 (471)
.-.+|++.+++.- -.-+||+|+.+|+..--.. .. . .=.+.|+..+
T Consensus 478 ri~iDl~~~~k~~--------------~kL~sY~L~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~Da~lv 543 (1193)
T 2gv9_A 478 MVNIDMYGIITDK--------------IKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLV 543 (1193)
T ss_dssp BEEEEHHHHHTTT--------------CCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEHHHHHHHH--------------CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6998437887663--------------04666889999999727777666888888887656778999999998879999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780661|r 185 LALVWLI 191 (471)
Q Consensus 185 ~~l~k~i 191 (471)
..|+..+
T Consensus 544 ~~L~~kl 550 (1193)
T 2gv9_A 544 GQLFFKF 550 (1193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999998