HHsearch results for GI: 254780661 and protein with PDBid: 2igi_A

>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.88  E-value=7.8e-22  Score=157.69  Aligned_cols=166  Identities=14%  Similarity=0.060  Sum_probs=116.6

Q ss_pred             CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCC----CCCCHHHHHHHCCCHHHHHHCCCCHHHH
Q ss_conf             837999752788987726048999999838972804002266217888----7785789898579988996079997999
Q gi|254780661|r    3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD----YLPDPEAVFITGITPQKALRDGVVEAEF   78 (471)
Q Consensus         3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~----~~p~p~a~~v~git~~~~~~~~~~~~e~   78 (471)
                      +|+||+|+||||++|..|+|||||+|++|.++.++++.....+.+...    ..+.+..........+.......+...+
T Consensus         5 ~~lv~lD~ETTGL~p~~D~IIeIaaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 2igi_A            5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREA   84 (180)
T ss_dssp             GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHH
T ss_pred             CCEEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHH
T ss_conf             97899986789999999847999999998995365413300012221246643466730102553301023454239999


Q ss_pred             HHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999995117---965999505578999999999850785321325688710015888865556532100244444544
Q gi|254780661|r   79 SRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA  155 (471)
Q Consensus        79 ~~~i~~~~~~~---~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~  155 (471)
                      ...+...+...   +..++++|+..||..|++..+.+....       ...+.+|+....+...                
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~~~l~~~~~~~~~~-------~~~~~lD~~~~~~~~~----------------  141 (180)
T 2igi_A           85 ELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAY-------FHYRYLDVSTLKELAR----------------  141 (180)
T ss_dssp             HHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHH-------SCSCEEETHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCC-------CCCCEECHHHHHHHHH----------------
T ss_conf             99899988751257872564575401699999889973001-------5885132677999998----------------


Q ss_pred             CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3310898998718876431013331899999999998642
Q gi|254780661|r  156 TSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK  195 (471)
Q Consensus       156 ~~~kL~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~  195 (471)
                          +...+..+|+.+.+||+|++||.+|++++|..++..
T Consensus       142 ----~~~~~~~~~~~~~~aHrAl~Dv~~ti~~l~~~r~~~  177 (180)
T 2igi_A          142 ----RWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHF  177 (180)
T ss_dssp             ----HHCGGGGGGSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ----HHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             ----649787729999997185899999999999999987