HHsearch results for GI: 254780661 and protein with PDBid: 2igi_A
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.88 E-value=7.8e-22 Score=157.69 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=116.6
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCC----CCCCHHHHHHHCCCHHHHHHCCCCHHHH
Q ss_conf 837999752788987726048999999838972804002266217888----7785789898579988996079997999
Q gi|254780661|r 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD----YLPDPEAVFITGITPQKALRDGVVEAEF 78 (471)
Q Consensus 3 ~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~----~~p~p~a~~v~git~~~~~~~~~~~~e~ 78 (471)
+|+||+|+||||++|..|+|||||+|++|.++.++++.....+.+... ..+.+..........+.......+...+
T Consensus 5 ~~lv~lD~ETTGL~p~~D~IIeIaaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREA 84 (180)
T ss_dssp GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHH
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHH
T ss_conf 97899986789999999847999999998995365413300012221246643466730102553301023454239999
Q ss_pred HHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999995117---965999505578999999999850785321325688710015888865556532100244444544
Q gi|254780661|r 79 SRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155 (471)
Q Consensus 79 ~~~i~~~~~~~---~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~ 155 (471)
...+...+... +..++++|+..||..|++..+.+.... ...+.+|+....+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~~~l~~~~~~~~~~-------~~~~~lD~~~~~~~~~---------------- 141 (180)
T 2igi_A 85 ELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAY-------FHYRYLDVSTLKELAR---------------- 141 (180)
T ss_dssp HHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHH-------SCSCEEETHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCC-------CCCCEECHHHHHHHHH----------------
T ss_conf 99899988751257872564575401699999889973001-------5885132677999998----------------
Q ss_pred CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3310898998718876431013331899999999998642
Q gi|254780661|r 156 TSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195 (471)
Q Consensus 156 ~~~kL~~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~ 195 (471)
+...+..+|+.+.+||+|++||.+|++++|..++..
T Consensus 142 ----~~~~~~~~~~~~~~aHrAl~Dv~~ti~~l~~~r~~~ 177 (180)
T 2igi_A 142 ----RWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp ----HHCGGGGGGSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----649787729999997185899999999999999987