HHsearch results for GI: 254780661 and protein with PDBid: 2ioc_B

>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00  E-value=3.6e-32  Score=224.13  Aligned_cols=186  Identities=17%  Similarity=0.193  Sum_probs=143.7

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCC------------------EECCEEEEEEECCCCCCCCCHHHHHHHCC
Q ss_conf             883799975278898772604899999983897------------------28040022662178887785789898579
Q gi|254780661|r    2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW------------------EKIESTEVFFCKPADDYLPDPEAVFITGI   63 (471)
Q Consensus         2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~------------------~~~~~~~~~~~~~~~~~~p~p~a~~v~gi   63 (471)
                      |++|||||+||||+++..++|||+|+|.+|.+.                  .++++++. .+  +|+..++|+|..||||
T Consensus        11 ~~t~v~~D~ETTGl~~~~~~Iieia~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-lv--~P~~~I~~~a~~ihGI   87 (242)
T 2ioc_B           11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL-CI--APGKACSPGASEITGL   87 (242)
T ss_dssp             CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEE-EC--CCSSCCCHHHHHHHCC
T ss_pred             CCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-EE--CCCCCCCHHHHHHCCC
T ss_conf             88599999888996999987689999998767534652221111135665411012330-12--8899799889986299


Q ss_pred             CHHHHHHCCCCH--HHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             988996079997--99999999995117--96599950557899999999985078532132568871001588886555
Q gi|254780661|r   64 TPQKALRDGVVE--AEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY  139 (471)
Q Consensus        64 t~~~~~~~~~~~--~e~~~~i~~~~~~~--~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~  139 (471)
                      |++++.+++.+.  ..+.+.+..++...  +.++||||+.+||..||++.++|++++..    .++...+|++.+++...
T Consensus        88 t~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~L~~~~~r~~~~~~----~~~~~~iDtl~~~~~~~  163 (242)
T 2ioc_B           88 SKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP----LDGTFCVDSIAALKALE  163 (242)
T ss_dssp             CHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT----TTTCEEEEHHHHHHHHH
T ss_pred             CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC----CCCCEEEEHHHHHHHHH
T ss_conf             99999720155056899998999997416885599835478899999999998599888----77886877899999970


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             653210024444454433108989987-188764310133318999999999986422689
Q gi|254780661|r  140 AFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVNAHDAKADVYATLALVWLIREKKPKLF  199 (471)
Q Consensus       140 ~~~p~~~~~~~~~~~~~~~kL~~la~~-n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~  199 (471)
                      ...+     +....+.+++||+.+++. +|++.++||+|++||.+|++|++.+.++...+.
T Consensus       164 ~~~~-----~~~~~~~~~~~L~~l~~~~~g~~~~~aH~Al~Da~~t~~l~~~~~~~~~~~~  219 (242)
T 2ioc_B          164 QASS-----PSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWV  219 (242)
T ss_dssp             HTC------------CCCCCHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred             HCCC-----CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3242-----2246776685689999997499998783889999999999999999999988