HHsearch results for GI: 254780661 and protein with PDBid: 2ioc_B
>2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=100.00 E-value=3.6e-32 Score=224.13 Aligned_cols=186 Identities=17% Similarity=0.193 Sum_probs=143.7
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCC------------------EECCEEEEEEECCCCCCCCCHHHHHHHCC
Q ss_conf 883799975278898772604899999983897------------------28040022662178887785789898579
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW------------------EKIESTEVFFCKPADDYLPDPEAVFITGI 63 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~------------------~~~~~~~~~~~~~~~~~~p~p~a~~v~gi 63 (471)
|++|||||+||||+++..++|||+|+|.+|.+. .++++++. .+ +|+..++|+|..||||
T Consensus 11 ~~t~v~~D~ETTGl~~~~~~Iieia~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-lv--~P~~~I~~~a~~ihGI 87 (242)
T 2ioc_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL-CI--APGKACSPGASEITGL 87 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEE-EC--CCSSCCCHHHHHHHCC
T ss_pred CCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-EE--CCCCCCCHHHHHHCCC
T ss_conf 88599999888996999987689999998767534652221111135665411012330-12--8899799889986299
Q ss_pred CHHHHHHCCCCH--HHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 988996079997--99999999995117--96599950557899999999985078532132568871001588886555
Q gi|254780661|r 64 TPQKALRDGVVE--AEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139 (471)
Q Consensus 64 t~~~~~~~~~~~--~e~~~~i~~~~~~~--~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~ 139 (471)
|++++.+++.+. ..+.+.+..++... +.++||||+.+||..||++.++|++++.. .++...+|++.+++...
T Consensus 88 t~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~lVahN~~~FD~~~L~~~~~r~~~~~~----~~~~~~iDtl~~~~~~~ 163 (242)
T 2ioc_B 88 SKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP----LDGTFCVDSIAALKALE 163 (242)
T ss_dssp CHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT----TTTCEEEEHHHHHHHHH
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC----CCCCEEEEHHHHHHHHH
T ss_conf 99999720155056899998999997416885599835478899999999998599888----77886877899999970
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 653210024444454433108989987-188764310133318999999999986422689
Q gi|254780661|r 140 AFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199 (471)
Q Consensus 140 ~~~p~~~~~~~~~~~~~~~kL~~la~~-n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~ 199 (471)
...+ +....+.+++||+.+++. +|++.++||+|++||.+|++|++.+.++...+.
T Consensus 164 ~~~~-----~~~~~~~~~~~L~~l~~~~~g~~~~~aH~Al~Da~~t~~l~~~~~~~~~~~~ 219 (242)
T 2ioc_B 164 QASS-----PSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDVLTLLSICQWKPQALLQWV 219 (242)
T ss_dssp HTC------------CCCCCHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HCCC-----CCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3242-----2246776685689999997499998783889999999999999999999988