HHsearch results for GI: 254780661 and protein with PDBid: 2p1j_A

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.96  E-value=2.5e-27  Score=193.04  Aligned_cols=167  Identities=20%  Similarity=0.247  Sum_probs=137.6

Q ss_pred             CEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHH
Q ss_conf             37999752788987726048999999838972804002266217888778578989857998899607999799999999
Q gi|254780661|r    4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH   83 (471)
Q Consensus         4 ~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~i~   83 (471)
                      .||++|+||||++|..++|||+|+|.++ +++++++++. +|+|  +..+++++..+|||+++++.+ +.+..+++.++.
T Consensus        13 ~yvviD~ETTGl~~~~~~Iieig~v~~~-~~~i~~~~~~-~v~p--~~~~~~~~~~i~gi~~~~~~~-~~~~~~~~~~~~   87 (186)
T 2p1j_A           13 TFVVLDFETTGLDPQVDEIIEIGAVKIQ-GGQIVDEYHT-LIKP--SREISRKSSEITGITQEMLEN-KRSIEEVLPEFL   87 (186)
T ss_dssp             CEEEEEEEESCSCTTTCCEEEEEEEEEE-TTEEEEEEEE-ECBC--SSCCCHHHHHHHCCCHHHHTT-CCBHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCCCEEEEEEEEEEE-CCEEEEEEEE-EECC--CCCCCHHHHHHCCCCHHHCCC-CCHHHHHHHHHH
T ss_conf             4999998728999999868999999998-9968778899-8668--876898999870987565002-121999999999


Q ss_pred             HHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             99511796599950557899999999985078532132568871001588886555653210024444454433108989
Q gi|254780661|r   84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL  163 (471)
Q Consensus        84 ~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~l  163 (471)
                      +++.  +.++|||| ++||..||+..+.+.+.+++.      +..+|++.+.+...              +.++++|+.+
T Consensus        88 ~~~~--~~~~v~hn-~~fD~~~L~~~~~~~~~~~~~------~~~id~~~~~~~~~--------------~~~~~~L~~l  144 (186)
T 2p1j_A           88 GFLE--DSIIVAHN-ANFDYRFLRLWIKKVMGLDWE------RPYIDTLALAKSLL--------------KLRSYSLDSV  144 (186)
T ss_dssp             HHSS--SCEEEETT-HHHHHHHHHHHHHHHHCCCCC------CCEEEHHHHHHHHT--------------CCSCCSHHHH
T ss_pred             HHCC--CCEEEEEC-HHHHHHHHHHHHHHHCCCCCC------CCCCCHHHHHHHHC--------------CCCCCCHHHH
T ss_conf             7469--99899977-898799999999984498766------76202099999865--------------6789889999


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98718876431013331899999999998642268
Q gi|254780661|r  164 ALANGIEHVNAHDAKADVYATLALVWLIREKKPKL  198 (471)
Q Consensus       164 a~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~  198 (471)
                      |+.+|++.+++|+|++||.+|++|+..+.++..+-
T Consensus       145 ~~~~gi~~~~~H~Al~Da~~t~~l~~~l~~~~k~~  179 (186)
T 2p1j_A          145 VEKLGLGPFRHHRALDDARVTAQVFLRFVEMMKKE  179 (186)
T ss_dssp             HHHTTCCSTTCCHHHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99869998989788999999999999999999824