HHsearch results for GI: 254780661 and protein with PDBid: 2qxf_A
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, product bound structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=100.00 E-value=0 Score=760.29 Aligned_cols=469 Identities=52% Similarity=0.955 Sum_probs=452.2
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHH
Q ss_conf 88379997527889877260489999998389728040022662178887785789898579988996079997999999
Q gi|254780661|r 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRR 81 (471)
Q Consensus 2 ~~~~v~~D~ETtG~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~~~~ 81 (471)
..+|||||+||||++|.+|||||+|||++|.+|++++++++++|||+|+++|+|+|+.|||||++++.++|.|++|++++
T Consensus 8 ~~~~v~~D~ETTGl~~~~d~iiq~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~ 87 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHHHHH
T ss_conf 89789999887897999982289999999899858514567763479999988789688494999997399999999999
Q ss_pred HHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99995117965999505578999999999850785321325688710015888865556532100244444544331089
Q gi|254780661|r 82 IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161 (471)
Q Consensus 82 i~~~~~~~~~~~ig~N~~~FD~~~lr~~~~r~~~~~y~~~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~ 161 (471)
|+++|+.|++++|||||++||++|+|+.||||+++||.++++++|.++|++.++++++.++|+.++||.+.+|+++|||+
T Consensus 88 i~~~~~~~~~~~vg~N~~~FD~~~l~~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 99998448976999676334799999998874478501220268750256888888864044221243234686646699
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf 89987188764310133318999999999986422689999962388989974200157607997010104778750688
Q gi|254780661|r 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241 (471)
Q Consensus 162 ~la~~n~i~~~~aH~A~~D~~~t~~l~k~i~~~~p~~~~~~l~~~~K~~v~~~l~~~~~~~~~~v~~~~~~~~~~~~~v~ 241 (471)
.+|++||+.+++||||++||.||++|+++|+.++|.+|++++.+++|+.|.+++..+++.+++++++.++.+.++.++++
T Consensus 168 ~l~~~~~i~~~~aHdA~~D~~~t~~l~~~l~~~~p~~~~~~l~~~~K~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 247 (482)
T 2qxf_A 168 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 (482)
T ss_dssp HHHHHTTCCCC---CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEE
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEC
T ss_conf 99998199877886635517999999999987471678788871578889998601113420566101155667402312
Q ss_pred EEECCCCCCCEEEEEECCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCCCCEEEEECCCCCEECCHHHCCHHHHHHCCCCH
Q ss_conf 63028887744787103568720007998899987406514420247743057653678754375570313455403588
Q gi|254780661|r 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321 (471)
Q Consensus 242 ~~~~~p~~~n~~i~fDL~~Dp~~~l~l~~~el~~~l~~~~~~~~~~~~~~lr~ik~Nk~Pil~~~~~~~~~~~~~~~i~~ 321 (471)
+++.||.|.|+.+||||++||+++++++.+++++.++++........+.++|++++|++|++++.+++.......++++.
T Consensus 248 ~~~~~p~~~n~~i~fDL~~Dp~~~l~L~~~el~~~l~~~~~~~~~~~~~~ir~i~~Nk~pil~~~~~~~~~~~~~~~~~~ 327 (482)
T 2qxf_A 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 327 (482)
T ss_dssp EEEECSSCTTEEEEEETTSCCHHHHHCC-------------------CCCEEEEETTSCCEEEEGGGSCHHHHHHHTCCH
T ss_pred CCCCCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCCCCHHHCCCCCHHHHHHHH
T ss_conf 46467777660463200039597744899999999850232112135664267402568755645551600076654039
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHCCC-CCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 9999989997618546888874430133-443332045410246897662216889759988986212048983799999
Q gi|254780661|r 322 KRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400 (471)
Q Consensus 322 ~~l~~r~~~l~~n~~~~~~~~~~~~~~~-~~~~~~~E~~IY~gF~s~~Dk~~~~~fh~a~~~~k~~i~~~f~D~Rl~~l~ 400 (471)
+.+.+|++.+++|+++.+++..+..... .+++.++|++||+||+++.|+.+|++||.++|+++++++.+|+|+|+++|+
T Consensus 328 ~~l~~r~~~i~~n~~~~~~i~~~~~~~~~~~~~~~~e~~iy~gF~s~~Dk~l~~~fh~a~~~ek~~~~~~f~D~Rl~~l~ 407 (482)
T 2qxf_A 328 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 407 (482)
T ss_dssp HHHHHHHHHHHHCTTHHHHC-------------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999998696889988999875234665411466675057987899999999847999999888358776899999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9996311810089999999999999750678889999999999965149988999999999999975278
Q gi|254780661|r 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470 (471)
Q Consensus 401 ~R~i~~n~P~~Ls~~~~~~~~~~i~~rl~~~~i~~~~~ei~~l~~~~~~d~~~~~iL~~l~~yl~~l~~~ 470 (471)
+|++|||+|+.||++++++|+++|++||+++|++++++++++++.+...+++++.||++|++|+++|+-.
T Consensus 408 ~r~i~rn~p~~L~~ee~~~~~~~i~~rl~~~t~~~~~~ei~~l~~~~~~~~~k~~iL~~l~~y~~~l~e~ 477 (482)
T 2qxf_A 408 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIVEH 477 (482)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999874821199999999999999985678599999999999976308999999999999999999876