HHsearch results for GI: 254780661 and protein with PDBid: 3iay_A
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA- binding, DNA-directed DNA polymerase, exonuclease; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.31 E-value=9.6e-06 Score=54.26 Aligned_cols=183 Identities=22% Similarity=0.231 Sum_probs=104.8
Q ss_pred CEEEEECCCCC-----CCCCCCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHH
Q ss_conf 37999752788-----9877260489999998389728040022662178887785789898579988996079997999
Q gi|254780661|r 4 HFVIYDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78 (471)
Q Consensus 4 ~~v~~D~ETtG-----~~~~~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v~git~~~~~~~~~~~~e~ 78 (471)
..+-||+||++ -++..|.|+|++.+.....-........ ++- ....+. .|. .+...+ +|.++
T Consensus 250 rilsfDIE~~~~~g~fp~~~~d~ii~I~~~~~~~g~~~~~~~~~-~~~--~~~~~~------~~~---~v~~~~-sE~eL 316 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNV-FTL--NTCSPI------TGS---MIFSHA-TEEEM 316 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEE-EEE--SCCCCB------TTB---EEEEES-SHHHH
T ss_pred EEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEE-ECC--CCCCCC------CCC---EEEEEC-CHHHH
T ss_conf 79999999786899886433451124678762267766426413-415--776788------996---799819-99999
Q ss_pred HHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHCCCCCC----------------------------CCCCCCCCCC
Q ss_conf 9999999511796-5999505578999999999850785321----------------------------3256887100
Q gi|254780661|r 79 SRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYR----------------------------WSWDNGNSRW 129 (471)
Q Consensus 79 ~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~~~~~y~----------------------------~~~~~~~~~~ 129 (471)
+..+.+++...++ +++|||+.+||.++|..=.-+.+.+... .....|.-.+
T Consensus 317 L~~F~~~i~~~DPDII~GyNi~~FDlpYL~~Ra~~l~i~~~~~~gr~~~~~~~~~~~~~~~~~~g~~~~~~~~i~Gr~~i 396 (919)
T 3iay_A 317 LSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQL 396 (919)
T ss_dssp HHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE
T ss_conf 99999998662998798757857537999999998587514331765776644565643454335644228987378998
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-CCCCCC-------------C-------CHHHHHHHHHHHHH
Q ss_conf 15888865556532100244444544331089899871-887643-------------1-------01333189999999
Q gi|254780661|r 130 DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVN-------------A-------HDAKADVYATLALV 188 (471)
Q Consensus 130 D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n-~i~~~~-------------a-------H~A~~D~~~t~~l~ 188 (471)
|++..++..+ .-++|+|+.+|... |..-.+ . -=.+.||..+..|+
T Consensus 397 Dl~~~~~~~~--------------kl~sy~L~~Va~~~lg~~K~dv~~~~i~~~~~~~~e~~~~l~~Y~l~Da~l~~~L~ 462 (919)
T 3iay_A 397 DLLQFIQREY--------------KLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLM 462 (919)
T ss_dssp EHHHHHHHHC--------------CCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHC--------------CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7799998756--------------56723289999877158876430444357775352679999999854368899999
Q ss_pred HHHH---------HHHHHHHHHHHHHCCHHHHHH
Q ss_conf 9998---------642268999996238898997
Q gi|254780661|r 189 WLIR---------EKKPKLFEYLYDYRNKNQLRK 213 (471)
Q Consensus 189 k~i~---------~~~p~~~~~~l~~~~K~~v~~ 213 (471)
.++. .-.+-.|.+.+....-..+..
T Consensus 463 ~kl~~~~~~~e~a~i~gvp~~~~l~~g~~~~v~~ 496 (919)
T 3iay_A 463 EKLMALVNYTEMARVTGVPFSYLLARGQQIKVVS 496 (919)
T ss_dssp HHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEHH
T ss_conf 9999999999998864920232113322888524