HHsearch results for GI: 254780661 and protein with PDBid: 3nae_A
>3nae_A DNA polymerase, GP43; RB69 DNA polymerase; HET: DNA G35 DOC DTP; 2.00A {Enterobacteria phage RB69} PDB: 3lzi_A* 3lzj_A* 1ig9_A* 1q9x_A* 2atq_A* 2dy4_A* 2oyq_A* 2ozm_A* 2ozs_A* 2p5g_A* 2p5o_A* 1q9y_A* 3l8b_A* 3lds_A* 3cq8_A* 1ih7_A* 1clq_A* 1waf_A* 1waj_A* 3cfr_A* ...
Probab=97.95 E-value=0.00015 Score=46.62 Aligned_cols=146 Identities=14% Similarity=0.033 Sum_probs=77.8
Q ss_pred CEEEEECCCCCC----CCC--CCEEEEEEEEEECCCCEECCEEEEEEECCCCCCCCCHHHHHH---------HCCCHHHH
Q ss_conf 379997527889----877--260489999998389728040022662178887785789898---------57998899
Q gi|254780661|r 4 HFVIYDYETFGR----DVA--LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI---------TGITPQKA 68 (471)
Q Consensus 4 ~~v~~D~ETtG~----~~~--~~~iiq~~~i~~d~~~~~~~~~~~~~~~~~~~~~p~p~a~~v---------~git~~~~ 68 (471)
+.+.||+||+.- +|. .+.|++|+... ... +++.++.....+..........+ .....+..
T Consensus 109 ~i~sfDIE~~s~~gFP~p~~~~d~Ii~Is~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (903)
T 3nae_A 109 RVANFDIEVTSPDGFPEPSQAKHPIDAITHYD--SID---DRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEII 183 (903)
T ss_dssp CEEEEEEEECCTTSSCCTTTCCSCEEEEEEEE--TTT---TEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCEEEEEEEE--CCC---CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 18999976788999998344789489999996--379---8289984257676652110234454322234455653346
Q ss_pred -----HHCCCCHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHH-------CCCCCCC---------------
Q ss_conf -----60799979999999999511796-5999505578999999999850-------7853213---------------
Q gi|254780661|r 69 -----LRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRN-------FYDSYRW--------------- 120 (471)
Q Consensus 69 -----~~~~~~~~e~~~~i~~~~~~~~~-~~ig~N~~~FD~~~lr~~~~r~-------~~~~y~~--------------- 120 (471)
..- .+|.+++..+.+++....| +++|||+.+||.++|..=.-+. .+.+...
T Consensus 184 ~~v~~~~~-~sE~eLL~~F~~~i~~~dPDII~GyN~~~FD~pYL~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 262 (903)
T 3nae_A 184 DKIIYMPF-DNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREI 262 (903)
T ss_dssp TTEEEEEE-SSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEE
T ss_conf 86289965-99999999999862505998999689877679999999998557632211254567652100002355314
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 25688710015888865556532100244444544331089899871
Q gi|254780661|r 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167 (471)
Q Consensus 121 ~~~~~~~~~D~l~~~~~~~~~~p~~~~~~~~~~~~~~~kL~~la~~n 167 (471)
....|...+|.+.+.+... .....|++|+.++...
T Consensus 263 ~~i~G~~~lD~~~l~~k~~------------~~~~~sy~Ld~va~~~ 297 (903)
T 3nae_A 263 ITLFGISVLDYIDLYKKFS------------FTNQPSYSLDYISEFE 297 (903)
T ss_dssp EEETTCEECCHHHHHHHHS------------CCCCSCCCHHHHHHHH
T ss_pred EEEECEEEEEHHHHHHHHH------------HHCCCCCHHHHHHHHH
T ss_conf 6660436752899999987------------6020112399999997