BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus
Liberibacter asiaticus str. psy62]
(471 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
gi|254040338|gb|ACT57134.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Length = 471
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI
Sbjct: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW
Sbjct: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD
Sbjct: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI
Sbjct: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC
Sbjct: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL
Sbjct: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW
Sbjct: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE
Sbjct: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
>gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 472
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/468 (69%), Positives = 386/468 (82%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+HFVIYDYETFG DVA DRPAQFAG+R+D Q E I+S EVFFCKP+DDYL DPE+V ITG
Sbjct: 2 DHFVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLITG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKALRDGVVE EF++R++QFF PNTCI GYNNIRFDD YS+NIFYRNFYD Y WS+
Sbjct: 62 ITPQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWSY 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDL++VMRAIYAFSPDGIQWP RDDG SFKLQDLALANGIE+VNAHDA+ DV
Sbjct: 122 KNGNSRWDLINVMRAIYAFSPDGIQWPHRDDGFPSFKLQDLALANGIEYVNAHDAEQDVD 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
ATLAL L+R +KPKLF YLY+ RNK L+ LIDI+N+TPLVHVS FGA+++NTALIAP
Sbjct: 182 ATLALARLVRREKPKLFNYLYNSRNKMHLKSLIDIRNLTPLVHVSSKFGAAQANTALIAP 241
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHPR + +I CNLSGDM+V QDLDS++L KRLFT HD+L GL PVP+K VH+N+CP+
Sbjct: 242 IAWHPRNANEIIACNLSGDMQVLQDLDSIELGKRLFTRHDQLNGLSPVPLKSVHINRCPV 301
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
L PI + FER GID KRC++NL LLRQQ +L+++ AIY+KP+ S S+DVDS+LYD
Sbjct: 302 LFPIGSFHSKKFERLGIDDKRCVDNLKLLRQQVDLQEKVIAIYDKPFVSLSEDVDSRLYD 361
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GF +D D ++ D I T PE+LSTLN F+D+RLPEL FRYRARNFPHTL KEKQ WLE
Sbjct: 362 GFLSDEDCKMRDCIPLTEPEKLSTLNFQFTDQRLPELLFRYRARNFPHTLDSKEKQAWLE 421
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
HRK + TRSRIEEY+NKL +L YK +E +E L+ L++YLQ ++PK
Sbjct: 422 HRKAIFTRSRIEEYENKLHTLLNAYKSNEREERLVQLLFDYLQLIVPK 469
>gi|85059110|ref|YP_454812.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
gi|84779630|dbj|BAE74407.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
Length = 473
Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust.
Identities = 282/463 (60%), Positives = 346/463 (74%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+++DYETFG+ ALDRPAQFAG+R D Q+E + EVFFC+PADDYLPDPEAV ITGIT
Sbjct: 10 FLVHDYETFGKYPALDRPAQFAGIRADSQFETLGEPEVFFCRPADDYLPDPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ALRDGV EAEF+RRIHQ FSVP+TCI+GYNN+RFDD SRN+FYRNFYD Y WSW
Sbjct: 70 PQQALRDGVTEAEFARRIHQLFSVPDTCILGYNNVRFDDEVSRNLFYRNFYDPYGWSWQQ 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNS WDLLDV+RA YA P+GI+WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 GNSCWDLLDVVRACYALRPNGIEWPLNDDGLPSFRLEHLTRANGIEHANAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
LA+ L+R+ +PKLF+YLY +R K QL+ L+DI M PLVHVSGMFGA+R NTA IAP+A
Sbjct: 190 LAMAKLMRQAQPKLFDYLYRHRGKRQLKSLVDIATMKPLVHVSGMFGAARGNTAWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++I C+LSGDM+V DLDS L RL+T D L VP+K V+LNKCP+L
Sbjct: 250 WHPDNPNALIVCDLSGDMQVLADLDSDALRTRLYTRRDALGDNTAVPLKLVYLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + ER GI +RCL+NLT LR + LR++ A++ + P+ SS DVD+QLYD
Sbjct: 310 PANTLQPMDAERLGIQRQRCLDNLTWLRARPELREKVVALFAESAPF-KSSDDVDAQLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ IL TAPE L L++ F D RL L FRYRARNFPHTL E+ WLE
Sbjct: 369 GFFSDADRAAMEIILATAPENLPALDISFVDARLKPLLFRYRARNFPHTLDHNEQLRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
HRK T+ R+E Y +L++L ++GDE K L+ AL+EYLQ
Sbjct: 429 HRKTRFTQPRLEAYVQQLETLYLAHEGDEHKTRLLRALFEYLQ 471
>gi|238789860|ref|ZP_04633641.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
gi|238722056|gb|EEQ13715.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
Length = 476
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 264/466 (56%), Positives = 345/466 (74%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +CKPADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCKPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+AT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVHAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI NMTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIVNMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM LDS L +RL+T D+L G VP+K VH+NKCP+L
Sbjct: 250 WHPDNKNAVIMCDLAGDMSPLLSLDSDTLRERLYTRRDKLNAGDAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ER GID +RCLENL LLRQ +R++ A++ + + S DVD+QLY+
Sbjct: 310 APAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAQAEAFAVSDDVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M IL+T P+ L L+L F D RL LFFR+RARN+P+TL++ E+Q WLE
Sbjct: 370 GFFSDADRATMKIILQTEPQNLPALDLTFQDSRLEPLFFRFRARNYPNTLTDSEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 430 HRRAALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARSLV 475
>gi|259908083|ref|YP_002648439.1| exonuclease I [Erwinia pyrifoliae Ep1/96]
gi|224963705|emb|CAX55202.1| Exodeoxyribonuclease I [Erwinia pyrifoliae Ep1/96]
gi|283477982|emb|CAY73898.1| exodeoxyribonuclease I [Erwinia pyrifoliae DSM 12163]
Length = 475
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 253/466 (54%), Positives = 341/466 (73%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD SRN+FYRNFYD Y WSW +
Sbjct: 70 PQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ ++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IAP+A
Sbjct: 190 IAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I C+L GDM +LD+ L RL+T +EL G PVP+K VH+NKCP++
Sbjct: 250 WHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCPVVA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + E ER GID +RCL+NL LLRQ +RD+ ++ +P+T S DVD+QLY+
Sbjct: 310 PANTLRAEDAERIGIDRQRCLDNLALLRQHPEVRDKVVTLFADAQPFTPSD-DVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q WL+
Sbjct: 369 GFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR++ML R++ Y +L+ L +Y+GD ++ + AL+ Y+Q ++
Sbjct: 429 HRRQMLNPERVQGYVQELEMLFNQYEGDRARQEQLKALFAYMQELV 474
>gi|153949389|ref|YP_001401389.1| exonuclease I [Yersinia pseudotuberculosis IP 31758]
gi|152960884|gb|ABS48345.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 31758]
Length = 476
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/467 (55%), Positives = 345/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ + P+ + + DVD+QLY
Sbjct: 310 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPF-AVADDVDTQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M I +T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 QHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|238749982|ref|ZP_04611486.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
gi|238711911|gb|EEQ04125.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
Length = 476
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/467 (55%), Positives = 343/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCTPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P GI WP +DG SFKL+ L ANG+EH+ AHDA +DV+AT
Sbjct: 130 GNSRWDLLDVMRACYALRPAGIVWPENEDGLPSFKLEHLTKANGVEHLQAHDAMSDVHAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI NMTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIANMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L
Sbjct: 250 WHPDNKNAVIMCDLAGDMSPLLELDSDALRERLYTRRDKLNAQEAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID +RCLENL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 EHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLV 475
>gi|51595906|ref|YP_070097.1| exonuclease I [Yersinia pseudotuberculosis IP 32953]
gi|170024741|ref|YP_001721246.1| exonuclease I [Yersinia pseudotuberculosis YPIII]
gi|186894995|ref|YP_001872107.1| exonuclease I [Yersinia pseudotuberculosis PB1/+]
gi|51589188|emb|CAH20808.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 32953]
gi|169751275|gb|ACA68793.1| Exodeoxyribonuclease I [Yersinia pseudotuberculosis YPIII]
gi|186698021|gb|ACC88650.1| Exonuclease domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 476
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/467 (55%), Positives = 344/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ + P+ + + DVD+QLY
Sbjct: 310 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPF-AVTDDVDTQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M I +T P+ L L+L F D RL L FR+RARN+P+TL+ E+Q WL
Sbjct: 369 NGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNNSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 QHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|310768007|gb|ADP12957.1| exonuclease I [Erwinia sp. Ejp617]
Length = 475
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 251/466 (53%), Positives = 341/466 (73%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD SR++FYRNFYD Y WSW +
Sbjct: 70 PQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRHLFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ ++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IAP+A
Sbjct: 190 IAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I C+L GDM +LD+ L RL+T +EL G PVP+K VH+NKCP++
Sbjct: 250 WHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCPVVA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + E ER GID +RCL+NL LLRQ +R++ ++ +P+T S DVD+QLY+
Sbjct: 310 PANTLRAEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFADAQPFTPSD-DVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q WL+
Sbjct: 369 GFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR++ML R++ Y +L+ L +Y+GD ++ + AL+ Y+Q ++
Sbjct: 429 HRRQMLNPERVQGYVQELEILFNQYEGDRARQEQLKALFAYMQELV 474
>gi|294635527|ref|ZP_06714007.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
gi|291091096|gb|EFE23657.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
Length = 473
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 258/465 (55%), Positives = 331/465 (71%), Gaps = 1/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ ALDRPAQFAGVR D + IE +VF+C+PADDYLP PEAV ITGIT
Sbjct: 8 FLFHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPEAVMITGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL G+ EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +SW N
Sbjct: 68 PQTALAQGICEAEFAERIHQLFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+R YA P GI WP + G SFKL+ L+ ANGIEH NAHDA ADVYAT
Sbjct: 128 GNSRWDLLDVLRTCYALRPQGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADVYAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+L+AP+A
Sbjct: 188 IEMAKRAKQAQPRLFDYLFQLRNKNRVAQLIDIAEMTPLVHVSGMFGALRGNTSLVAPLA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP K++VI C+L+GD+ LDS L +RL+T EL PVPIK VH+NKCP+L
Sbjct: 248 WHPDNKNAVIVCDLAGDITPLLTLDSETLRERLYTPRSELGDAAPVPIKLVHINKCPVLA 307
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYDG 363
P E+ ER G+D +RCL+NL LR +RD+ +++ + P + DVDSQLYDG
Sbjct: 308 PEKTLLAENAERLGLDRQRCLDNLAQLRHHHAVRDKVVSLFADAPPFPRASDVDSQLYDG 367
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+D DRQ M I T P+ L L+L F+D R+ L FRYRARN+P TL E E+Q W +H
Sbjct: 368 FFSDADRQAMQIIRATQPQNLPALDLRFNDERITPLLFRYRARNYPATLDEAERQRWQQH 427
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R++MLT R++EY L+ L Y+ + L+ AL++Y + ++
Sbjct: 428 RREMLTAERVQEYLQTLEMLYNRYEDQPQRLTLLRALFDYARELV 472
>gi|188533503|ref|YP_001907300.1| exonuclease I [Erwinia tasmaniensis Et1/99]
gi|188028545|emb|CAO96407.1| Exodeoxyribonuclease I [Erwinia tasmaniensis Et1/99]
Length = 475
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 250/466 (53%), Positives = 343/466 (73%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV +TGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAALRTDMDFNPIGEPEVFYCRPADDYLPQPEAVMVTGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ EAEF++RIHQ FS PNTC++GYNN+RFDD SRN+FYRNFYD Y WSW +
Sbjct: 70 PQIARARGLNEAEFTQRIHQLFSAPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPDGIVWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ ++EK+P+L+++LY +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IAP+A
Sbjct: 190 IAMAKRVKEKQPRLYDFLYAHRNKQKIGALIDIPQMKPLVHISGMFGAARGNTSWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I C+L GDM +LD+ L +RL+T +EL G PVP+K VH+NKCP++
Sbjct: 250 WHPDNRNALITCDLGGDMAPLLELDADALRERLYTRREELNGASPVPLKLVHINKCPVVA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + E ER GID +RCL+NLTLLRQ +R++ ++ +P+ S+DVD+QLY+
Sbjct: 310 PANTLRPEDAERIGIDRQRCLDNLTLLRQHPEVREKVVTLFAEAQPFI-PSEDVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q WL+
Sbjct: 369 GFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDAEQQSWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++L R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++
Sbjct: 429 HRREVLNPERVQGYVQELEMLFNQYEGDKTRQEQLKALFAYMQELV 474
>gi|312172834|emb|CBX81090.1| exodeoxyribonuclease I [Erwinia amylovora ATCC BAA-2158]
Length = 475
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/465 (53%), Positives = 339/465 (72%), Gaps = 1/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A + G+ EAEF+ RIH FS NTC++GYNN+RFDD SRN+FYRNFYD Y WSW +
Sbjct: 70 PQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R N + IAP+A
Sbjct: 190 IAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I C+L DM +LD+ L RL+T DEL G PVP+K VH+NKCP++
Sbjct: 250 WHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCPVVA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
P + + E ER GID +RCL+NL LLRQ +R++ ++ + P + S DVDSQ+Y+G
Sbjct: 310 PANTLRPEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQIYNG 369
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL +KE+Q WL+H
Sbjct: 370 FFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRWLQH 429
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R++M + R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++
Sbjct: 430 RRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELV 474
>gi|300717468|ref|YP_003742271.1| exodeoxyribonuclease I [Erwinia billingiae Eb661]
gi|299063304|emb|CAX60424.1| Exodeoxyribonuclease I [Erwinia billingiae Eb661]
Length = 475
Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust.
Identities = 250/463 (53%), Positives = 339/463 (73%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFAG+R D + I EVF+C+PADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGKSPSLDRPAQFAGIRTDMDFNIIGEPEVFYCQPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ EA F++RIH FS PNTCI+GYNN+RFDD +RN+ YRNFYD Y W+W +
Sbjct: 70 PQLAKAKGISEAAFTKRIHALFSEPNTCIVGYNNVRFDDEVTRNLLYRNFYDPYGWAWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIAWPENDDGLPSFRLEHLTKANGVSHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++EK+P+L+++L+ +RNKN++ LIDI M PLVH+SGMFGA R NT+ IAP+A
Sbjct: 190 IAMAKLVKEKQPRLYDFLFTHRNKNKITALIDIPQMKPLVHISGMFGAFRGNTSWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP K+++I C+L+GD+ +LD+ L +RL+T +EL PVP+K +H+NKCP++
Sbjct: 250 WHPVNKNALITCDLAGDITPLLELDADTLRERLYTRREELGDNAPVPVKLMHINKCPVVA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + E ER GID KRCL+NL +LRQ +R++ A++ +P+ SS DVD+QLYD
Sbjct: 310 PANTLRPEDAERLGIDRKRCLDNLAILRQHPEVREKVVALFAEAEPFAGSS-DVDAQLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ I +T PE L L+L F+D R+ +L FR+RARN+P TL E E+ WL+
Sbjct: 369 GFFSDADRNTMNIIQQTLPENLPALDLTFNDARIEKLLFRFRARNYPGTLDEAEQTRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
HR++ L R++ Y +L+ L +Y+GD GKE + L++Y+Q
Sbjct: 429 HRREALNPERVQSYVQELEMLFNQYEGDIGKEKDLKMLFQYVQ 471
>gi|238761111|ref|ZP_04622088.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238761364|ref|ZP_04622340.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238700338|gb|EEP93079.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238700591|gb|EEP93331.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
Length = 476
Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/462 (56%), Positives = 341/462 (73%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQQALAKGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+AT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVHAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDISDMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L +P+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLNAQDAAIPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID +RCL NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLAENAERLGIDRQRCLRNLQLLRQNPQIREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIILQTDPQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
HR++ L R++EY +L+ +Y+GD+ K L+ AL++Y
Sbjct: 429 AHRREALNPERVQEYVLQLEQFYNQYEGDKEKLALLKALFDY 470
>gi|238793487|ref|ZP_04637112.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
gi|238727260|gb|EEQ18789.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
Length = 476
Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/467 (55%), Positives = 343/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFSRQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+AT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVHAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM LDS L +RL+T D+L VP+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLALDSDTLRERLYTRRDKLNTQDAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID +RCL+NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T P+ L L+L F D RL LFFR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLETLFFRFRARNYPNTLTDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 AHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLV 475
>gi|292488688|ref|YP_003531575.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
gi|292899843|ref|YP_003539212.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
gi|291199691|emb|CBJ46811.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
gi|291554122|emb|CBA21287.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
Length = 475
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 247/465 (53%), Positives = 338/465 (72%), Gaps = 1/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A + G+ EAEF+ RIH FS NTC++GYNN+RFDD SRN+FYRNFYD Y WSW +
Sbjct: 70 PQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R N + IAP+A
Sbjct: 190 IAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I C+L DM +LD+ L RL+T DEL G PVP+K VH+NKCP++
Sbjct: 250 WHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCPVVA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
P + + E ER GID +RC +NL LLRQ +R++ ++ + P + S DVDSQ+Y+G
Sbjct: 310 PANTLRPEDAERIGIDRQRCRDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQIYNG 369
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL +KE+Q WL+H
Sbjct: 370 FFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRWLQH 429
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R++M + R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++
Sbjct: 430 RRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELV 474
>gi|21959485|gb|AAM86164.1|AE013862_9 exonuclease I [Yersinia pestis KIM 10]
Length = 497
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/467 (55%), Positives = 344/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITGIT
Sbjct: 31 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGIT 90
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 91 PQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 150
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVYAT
Sbjct: 151 GNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYAT 210
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 211 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 270
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP+L
Sbjct: 271 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVL 330
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ + P+ + + DVD+QLY
Sbjct: 331 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPF-AVTDDVDTQLY 389
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 390 NGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWL 449
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 450 QHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 496
>gi|238755403|ref|ZP_04616744.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
gi|238706340|gb|EEP98716.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
Length = 476
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/466 (55%), Positives = 336/466 (72%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQHPALDRPAQFAGVRTDLDFNIIEEPLVVYCSPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL G+ EAEFS++IHQ FSV TCI+GYNNIRFDD SRNIFYRNFYD Y +SW N
Sbjct: 70 PQTALAKGINEAEFSQQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV+AT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVHAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IALAKLVKQAQPRLFDYLYQHRSKHKISALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GD+ +LD+ L +RL+T D+L VPIK VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDISPLLELDAETLRERLYTRRDKLSADQAAVPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYD 362
P E+ ER ID +RCL+NL +LRQ +R++ ++ P ++S DVD+QLYD
Sbjct: 310 APAKTLLAENAERLAIDRQRCLQNLQVLRQNPQIREKVVTLFAESPPFAASSDVDAQLYD 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D DR M I +TAP+ L L+L F D RL EL FR+RARN+P+TL + E++ W
Sbjct: 370 GFFGDADRATMKIIQQTAPQNLPALDLSFQDPRLTELLFRFRARNYPNTLDDSEQRRWQN 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR++ML+ R++EY +L+ Y+ D+ K L+ LY+Y + ++
Sbjct: 430 HRREMLSPERVQEYVQQLEQFYNLYESDKEKLALLKDLYDYARELV 475
>gi|162419714|ref|YP_001607449.1| exonuclease I [Yersinia pestis Angola]
gi|166009382|ref|ZP_02230280.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211647|ref|ZP_02237682.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167424322|ref|ZP_02316075.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|270486761|ref|ZP_06203835.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
gi|294503532|ref|YP_003567594.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
gi|162352529|gb|ABX86477.1| exodeoxyribonuclease I [Yersinia pestis Angola]
gi|165991937|gb|EDR44238.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207418|gb|EDR51898.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167057171|gb|EDR66934.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|262361575|gb|ACY58296.1| exodeoxyribonuclease I [Yersinia pestis D106004]
gi|262365685|gb|ACY62242.1| exodeoxyribonuclease I [Yersinia pestis D182038]
gi|270335265|gb|EFA46042.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
gi|294353991|gb|ADE64332.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
Length = 487
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/467 (55%), Positives = 344/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITGIT
Sbjct: 21 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGIT 80
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 81 PQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 140
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVYAT
Sbjct: 141 GNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYAT 200
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 201 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 260
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP+L
Sbjct: 261 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVL 320
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ + P+ + + DVD+QLY
Sbjct: 321 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPF-AVTDDVDTQLY 379
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 380 NGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWL 439
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 440 QHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 486
>gi|157371451|ref|YP_001479440.1| exonuclease I [Serratia proteamaculans 568]
gi|157323215|gb|ABV42312.1| Exodeoxyribonuclease I [Serratia proteamaculans 568]
Length = 475
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/462 (56%), Positives = 340/462 (73%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG ++DRPAQFAGVR D + IE V +C PADDYLPDPEAV ITGIT
Sbjct: 9 FYIHDYETFGISPSMDRPAQFAGVRTDMDFNIIEEPLVIYCTPADDYLPDPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+R+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW N
Sbjct: 69 PQLALAKGVNEAEFTRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP +DG SF+L+ L ANG+EH +AHDA +DVYAT
Sbjct: 129 GNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF++L +RNK++L LIDI MTPLVHVSGMFGA+R NT+ ++P+A
Sbjct: 189 IAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM L + +L +RL+T ++L G PVPIK VH+NKCP+L
Sbjct: 249 WHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAPGQSPVPIKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID + CL+NL LLRQ +R++ A++ +P+ S DVD++LY
Sbjct: 309 APAKTLLPENAERLGIDRQACLQNLQLLRQHPQVREKVVALFADAEPF-KGSDDVDARLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D D+ M I +T P+ L L+L F+D RL EL FR+RARN+P+TL + E++ WL
Sbjct: 368 DGFFSDADKATMKIIQQTKPQNLPALDLTFNDGRLKELLFRFRARNYPNTLDDTEQRRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+HR++ L+ R++ Y +L+SL ++GD+ K L+ AL+EY
Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDQEKTALLKALFEY 469
>gi|145598704|ref|YP_001162780.1| exonuclease I [Yersinia pestis Pestoides F]
gi|145210400|gb|ABP39807.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Pestoides F]
Length = 476
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/467 (55%), Positives = 344/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ + P+ + + DVD+QLY
Sbjct: 310 APAKTLLPENSDRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPF-AVTDDVDTQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 QHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|45441270|ref|NP_992809.1| exonuclease I [Yersinia pestis biovar Microtus str. 91001]
gi|108806850|ref|YP_650766.1| exonuclease I [Yersinia pestis Antiqua]
gi|149366477|ref|ZP_01888511.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
gi|161484780|ref|NP_669913.2| exonuclease I [Yersinia pestis KIM 10]
gi|165924676|ref|ZP_02220508.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939554|ref|ZP_02228099.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
IP275]
gi|167400240|ref|ZP_02305753.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421764|ref|ZP_02313517.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167470369|ref|ZP_02335073.1| exodeoxyribonuclease I [Yersinia pestis FV-1]
gi|218928697|ref|YP_002346572.1| exonuclease I [Yersinia pestis CO92]
gi|229841541|ref|ZP_04461700.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843652|ref|ZP_04463795.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
gi|229894245|ref|ZP_04509428.1| exonuclease I [Yersinia pestis Pestoides A]
gi|45436130|gb|AAS61686.1| exodeoxyribonuclease I [Yersinia pestis biovar Microtus str. 91001]
gi|108778763|gb|ABG12821.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Antiqua]
gi|115347308|emb|CAL20203.1| exodeoxyribonuclease I [Yersinia pestis CO92]
gi|149290851|gb|EDM40926.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
gi|165912470|gb|EDR31102.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
IP275]
gi|165923736|gb|EDR40868.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166960249|gb|EDR56270.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050189|gb|EDR61597.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229689260|gb|EEO81323.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
gi|229697907|gb|EEO87954.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229703643|gb|EEO90659.1| exonuclease I [Yersinia pestis Pestoides A]
gi|320015573|gb|ADV99144.1| exonuclease I [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 476
Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/467 (55%), Positives = 344/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ + P+ + + DVD+QLY
Sbjct: 310 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPF-AVTDDVDTQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 QHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|108812583|ref|YP_648350.1| exonuclease I [Yersinia pestis Nepal516]
gi|229902976|ref|ZP_04518092.1| exonuclease I [Yersinia pestis Nepal516]
gi|108776231|gb|ABG18750.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Nepal516]
gi|229679886|gb|EEO75986.1| exonuclease I [Yersinia pestis Nepal516]
Length = 476
Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/467 (55%), Positives = 344/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ + P+ + + DVD+QLY
Sbjct: 310 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPF-AVTDDVDTQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 QHRREALSPERVQDYVLQLEQFYNQYEDDKEKLTLLKALFEYAKGLV 475
>gi|307130832|ref|YP_003882848.1| exonuclease I [Dickeya dadantii 3937]
gi|306528361|gb|ADM98291.1| exonuclease I [Dickeya dadantii 3937]
Length = 476
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/466 (56%), Positives = 331/466 (71%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLPDPEAV ITGIT
Sbjct: 10 FFIHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G EAEF+R IH+ FS P TCI+GYNNIRFDD SRN+FYRNFYD Y +SW N
Sbjct: 70 PQVAQSRGTREAEFARHIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFYDPYAYSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI WP DDG SF+L+ L ANG+EH AHDA +DVYAT
Sbjct: 130 GNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P+A
Sbjct: 190 IAMARLLKQSQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD++ +LD+ +L RL+T L + PVPIK VH+NKCP+L
Sbjct: 250 WHPDNRNAVIVCDLAGDIQPLLELDADELRTRLYTRRALLAEDESPVPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYD 362
P + E ER GID +RCL NL LLRQ ++R++ A++ + P S DVD QLYD
Sbjct: 310 APASTLRPEDAERLGIDRQRCLNNLQLLRQHGSVREKVVALFADAPPFEVSTDVDLQLYD 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR MD I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q WL
Sbjct: 370 GFFSDADRAAMDIIRKTDSQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRWLA 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T R+++Y + L L ++ GDE K L+ AL+ Y Q ++
Sbjct: 430 HRRAVFTTDRVQDYFDALNQLYQQHDGDEKKTALLKALFAYAQQLL 475
>gi|238757180|ref|ZP_04618367.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
gi|238704558|gb|EEP97088.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
Length = 476
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/462 (55%), Positives = 340/462 (73%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSNTLRERLYTRRDKLGAQDAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID +RCL+NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIILQTEPKNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
EHR++ L +++ Y +L+ +Y+ D+ K L+ AL++Y
Sbjct: 429 EHRREALNAEKVQAYMLQLEQFYNQYEDDKEKLALLKALFDY 470
>gi|322832303|ref|YP_004212330.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
gi|321167504|gb|ADW73203.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
Length = 475
Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust.
Identities = 255/462 (55%), Positives = 339/462 (73%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG++ ALDRPAQFAGVR D + IE V +C+P+DDYLP+PEAV ITGIT
Sbjct: 9 FYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL G++EAEF+ +IH+ FSVP TCI+GYNNIRFDD SRNI YRNF+D Y +SW N
Sbjct: 69 PQVALERGLIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFHDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 129 GNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHDAMADVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF +L ++R+K++L LIDI M PLVHVSGMFGA+R NTA +AP+A
Sbjct: 189 IAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGNTAWVAPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM DL+ ++ +RL++ + L+ G P+P+K VH+NKCP+L
Sbjct: 249 WHPENKNAVIMCDLAGDMSTLLDLNPDEMRERLYSRREALQAGQSPLPVKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID +RCLENL LLRQ +R++ ++ +P+T S DVD++LY
Sbjct: 309 APAKTLLPENAERLGIDRQRCLENLQLLRQNPQVREKVVTMFAEAEPFTPSD-DVDARLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M I+ T PE L L+L F+D R+ L FR+RARN+P TL++ E++ W+
Sbjct: 368 DGFFSDADRAAMRIIVETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTDAEQKRWM 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
HR++ LT R++ Y +L+SL ++GD K L+ AL+EY
Sbjct: 428 LHRQEKLTDERVQAYILELESLYNLHEGDVEKMALLKALFEY 469
>gi|251789913|ref|YP_003004634.1| exonuclease I [Dickeya zeae Ech1591]
gi|247538534|gb|ACT07155.1| Exodeoxyribonuclease I [Dickeya zeae Ech1591]
Length = 476
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/466 (55%), Positives = 332/466 (71%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLPDP+AV ITGIT
Sbjct: 10 FFVHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPADDYLPDPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ E EF+R IH+ FSVP TCI+GYNNIRFDD SRN+FYRNF D Y +SW N
Sbjct: 70 PQIAQSRGIRETEFARHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI WP DDG SF+L+ L ANG+EH AHDA +DVYAT
Sbjct: 130 GNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P+A
Sbjct: 190 IAMARLLKQAQPKLFDYLYGLRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD++ LD+ +L RL+T D L + PVPIK VH+NKCP+L
Sbjct: 250 WHPDNRNAVIVCDLAGDIQPLLSLDADELRTRLYTRRDLLAEDESPVPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYD 362
P + E ER GID + CL NL LLRQ +++R++ A++ + P +++DVD QLYD
Sbjct: 310 APASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQLYD 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q WL
Sbjct: 370 GFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRWLA 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ M T R+++Y + L L + GDE K L+ AL+ Y Q ++
Sbjct: 430 HRRAMFTTERVQDYFDTLNQLYQLHDGDEKKAALLKALFAYAQQLL 475
>gi|332161149|ref|YP_004297726.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325665379|gb|ADZ42023.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 476
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/462 (55%), Positives = 342/462 (74%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
EHR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y
Sbjct: 429 EHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDY 470
>gi|318605038|emb|CBY26536.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 476
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/462 (55%), Positives = 342/462 (74%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKRVKQAQPRLFDYLYQHRSKHKINALIDITDMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
EHR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y
Sbjct: 429 EHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDY 470
>gi|238795750|ref|ZP_04639264.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
gi|238720476|gb|EEQ12278.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
Length = 476
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/467 (54%), Positives = 343/467 (73%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+I+Q F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQINQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+AT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVHAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L +P+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAIPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID +RCL+NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E++ WL
Sbjct: 369 NGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQKRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 429 EHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|317491333|ref|ZP_07949769.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920880|gb|EFV42203.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 474
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/467 (55%), Positives = 339/467 (72%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+I+DYETFG+ ALDRPAQFAGVR D + IE V +C+P+DDYLP PEAV ITGIT
Sbjct: 8 FLIHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPSDDYLPQPEAVMITGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEFSR+I+Q FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW N
Sbjct: 68 PQVALTRGVSEAEFSRQINQIFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+R YA P+GI WP ++G SFKL+ L+ ANGIEH NAHDA ADVYAT
Sbjct: 128 GNSRWDLLDVLRTCYALRPEGINWPENEEGLPSFKLEHLSKANGIEHENAHDAMADVYAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL L+++ +PKLF+YL+ RNK+++ L+DI NM PLVH+SGMFGA R NT+L+AP+A
Sbjct: 188 IALAKLVKQAQPKLFDYLFQLRNKHKVSALLDIANMKPLVHISGMFGALRGNTSLVAPLA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LD+ L +RL+T EL+ P P+K VH+NKCP+L
Sbjct: 248 WHPDNKNAVIMCDLAGDMSPLLELDTDALRERLYTRRSELRSDQPPAPLKLVHINKCPVL 307
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P + E+ ER G+D +RC++NL LLR LRD+ A++ +P+ +S DVD+QLY
Sbjct: 308 APDQTLRPENAERLGLDRQRCMDNLQLLRNHPELRDKVVAVFAEAEPF-KASDDVDAQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M I T P+ L L+L F+D+R+ L FRYRARNFP TL++ E++ W
Sbjct: 367 DGFFSDADRSAMQIIRETLPQNLPALDLTFNDKRVLPLLFRYRARNFPTTLTDDEQRRWQ 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ +LT R++ Y ++L+ L ++ + K + L+EY + ++
Sbjct: 427 LHRQAVLTPERLQAYIHQLEELYNRHEDEPEKLAQLKELFEYARQLV 473
>gi|270262717|ref|ZP_06190988.1| exonuclease I [Serratia odorifera 4Rx13]
gi|270043401|gb|EFA16494.1| exonuclease I [Serratia odorifera 4Rx13]
Length = 475
Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust.
Identities = 254/462 (54%), Positives = 340/462 (73%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ++DRPAQFAGVR D + IE V +CKPADDYLPDPEAV ITGIT
Sbjct: 9 FYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL G+ EA+F+R IHQ FSVP TCI+GYNNIRFDD SRNIFYR+FYD Y +SW N
Sbjct: 69 PQLALAKGINEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+EH +AHDA +DVYAT
Sbjct: 129 GNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF++L +RNK++L LIDI MTPLVHVSGMFGA+R NT+ ++P+A
Sbjct: 189 IAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM L + +L +RL+T ++L PVPIK VH+NKCP+L
Sbjct: 249 WHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID + CL+NL LLRQ +R++ A++ +P+ + DVD++LY
Sbjct: 309 APAKTLLPENAERLGIDRQACLQNLQLLRQNPQVREKVVALFADAEPF-KAVDDVDARLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D D+ M I +T P+ L L+L FSD R+ EL FR+RARN+P+TL + E++ WL
Sbjct: 368 DGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTLDDAEQRRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+HR++ L+ R++ Y +L+SL ++GD+ K L+ AL+EY
Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDKEKTALLKALFEY 469
>gi|304397387|ref|ZP_07379265.1| Exodeoxyribonuclease I [Pantoea sp. aB]
gi|304355005|gb|EFM19374.1| Exodeoxyribonuclease I [Pantoea sp. aB]
Length = 475
Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 333/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG + DRPAQFAG+R D ++ + +VF+C+P DDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPDVFYCRPPDDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A+ G++EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y W+W N
Sbjct: 70 PQIAMSRGMIEAEFAERIHTLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP ++G SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPDGIIWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
LA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ I P+A
Sbjct: 190 LAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIVPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I +L+GDM LD+ L +RL+T ++L L PVP+K VH+NKCP+L
Sbjct: 250 WHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPPVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + E R GID + CL NL LLRQQ ++R++ ++ +P+T S DVD+QLYD
Sbjct: 310 PASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD-DVDTQLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q WL+
Sbjct: 369 GFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++L R++ + +L+ L+ ++ D K G + ALY Y Q ++
Sbjct: 429 HRREVLNAERVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELV 474
>gi|271500784|ref|YP_003333809.1| exodeoxyribonuclease I [Dickeya dadantii Ech586]
gi|270344339|gb|ACZ77104.1| Exodeoxyribonuclease I [Dickeya dadantii Ech586]
Length = 476
Score = 538 bits (1385), Expect = e-151, Method: Compositional matrix adjust.
Identities = 258/466 (55%), Positives = 333/466 (71%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLPDPEAV ITGIT
Sbjct: 10 FFIHDYETFGKHPAKDRPAQFAGVRTDLNFTVIGEPVVIYCQPADDYLPDPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A + GV EAEF+ IH+ FSVP TCI+GYNNIRFDD SRN+FYRNF+D Y +SW
Sbjct: 70 PQVAQKRGVREAEFANHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFFDPYAYSWQQ 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI WP DDG SFKL+ L ANG+EH AHDA +DVYAT
Sbjct: 130 GNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFKLEHLTRANGVEHTQAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P+A
Sbjct: 190 IAMARLLKQAQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD++ LD+ +L RL+T + L + PVPIK VH+NKCP+L
Sbjct: 250 WHPDNRNAVIVCDLAGDIQPLLALDADELRTRLYTRRELLAEDESPVPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYD 362
P + E ER GID + CL NL LLRQ +++R++ A++ + P +++DVD QLYD
Sbjct: 310 APASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQLYD 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q WL
Sbjct: 370 GFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRWLA 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T R++ Y + L L ++ GDE K + AL+ Y Q ++
Sbjct: 430 HRREVFTAERLQNYFDTLDQLYQQHDGDEKKTTQLKALFAYAQQLL 475
>gi|238919203|ref|YP_002932718.1| exonuclease I [Edwardsiella ictaluri 93-146]
gi|238868772|gb|ACR68483.1| exodeoxyribonuclease I [Edwardsiella ictaluri 93-146]
Length = 473
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/465 (54%), Positives = 331/465 (71%), Gaps = 1/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+PADDYLP P+AV ITGIT
Sbjct: 8 FLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPDAVMITGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+ RIH+ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +SW N
Sbjct: 68 PQTALAQGVCEAEFAGRIHRLFSVPGTCVLGYNNIRFDDEVSRNLFYRNFFDPYAYSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+R YA P+GI WP + G SFKL+ L+ ANGIEH NAHDA ADVYAT
Sbjct: 128 GNSRWDLLDVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADVYAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LIAP+A
Sbjct: 188 IALAQRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIAPLA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP K++VI C+L D+ LD+ L +RL+T +EL PVPIK VH+NKCP+L
Sbjct: 248 WHPENKNAVIVCDLDSDITPLLTLDADALRERLYTPRNELGDAAPVPIKLVHINKCPVLA 307
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYDG 363
P ++ R G+D +RC +NL LL+Q + +RD+ +++ + P S DVDSQLYDG
Sbjct: 308 PEKTLLADNAVRLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQLYDG 367
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+D DRQ M I T P+ L L+L F+DRR+ L FRYRARN+P TL E E + W +H
Sbjct: 368 FFSDADRQAMQIIRATLPQNLPALDLRFNDRRITPLLFRYRARNYPATLDESEMRRWQQH 427
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R+ MLT +++Y L+ L Y+ + L+ AL++Y + ++
Sbjct: 428 RQSMLTPQHVQDYLQTLEMLYNRYEDQPQRLTLLQALFDYARELV 472
>gi|261821314|ref|YP_003259420.1| exonuclease I [Pectobacterium wasabiae WPP163]
gi|261605327|gb|ACX87813.1| Exodeoxyribonuclease I [Pectobacterium wasabiae WPP163]
Length = 475
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 259/466 (55%), Positives = 331/466 (71%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLP+PEAV ITGIT
Sbjct: 9 FFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW +
Sbjct: 69 PQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVYAT
Sbjct: 129 GNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L ++ +PKLFEYL+ RNKN+L LIDI M PLVHVSGMFGA+RSNT+ I P+A
Sbjct: 189 IAMAKLFKQAQPKLFEYLFPLRNKNKLSALIDIPQMKPLVHVSGMFGAARSNTSWIVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKCP+L
Sbjct: 249 WHPDNRNAVIMCDLAGDMTPLLELDSQALRERLYTRRDALTADQSAVPLKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
P + + E ER GID +RCL+NL LLR +++R++ ++ + P ++S DVD +LYD
Sbjct: 309 APANTLRPEDAERLGIDRQRCLDNLALLRSNSDVREKVVELFAEAPAFAASDDVDLRLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q WL+
Sbjct: 369 GFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T R++ Y ++L L ++ D+ K + ALY Y Q ++
Sbjct: 429 HRRAVFTPERLQNYLSELSELYQRHEDDKEKMTQLKALYAYAQELV 474
>gi|123442974|ref|YP_001006949.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122089935|emb|CAL12792.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 476
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/462 (55%), Positives = 340/462 (73%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH +AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ +R GID +RCL+NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q WL
Sbjct: 369 NGFFSDADRATMKIILQTKAQNLPALDLTFQDPRLEVLLFRFRARNYPNTLTDSEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
HR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y
Sbjct: 429 AHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDY 470
>gi|308187438|ref|YP_003931569.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
gi|308057948|gb|ADO10120.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
Length = 475
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 333/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG + DRPAQFAG+R D ++ + EVF+C+P DDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A+ GV+EAEF+ RIH+ F+ TC++GYNN+RFDD +RNIFYRNFYD Y W+W N
Sbjct: 70 PQIAMSRGVIEAEFAERIHKLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI WP ++G SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 130 GNSRWDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
LA+ L++EK+PKLF++L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ I P+A
Sbjct: 190 LAMAKLVKEKQPKLFDFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIVPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I +L+GDM LD+ L +RL+T ++L L VP+K VH+NKCP+L
Sbjct: 250 WHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + E R GID + CL NL LLRQQ ++R++ ++ +P+T S DVD+QLYD
Sbjct: 310 PASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD-DVDTQLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q WL+
Sbjct: 369 GFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++L R++ + +L+ L+ ++ D K G + ALY Y Q ++
Sbjct: 429 HRREVLNSDRVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELV 474
>gi|227111961|ref|ZP_03825617.1| exonuclease I [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 475
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/466 (55%), Positives = 332/466 (71%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLP+PEAV ITGIT
Sbjct: 9 FFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW N
Sbjct: 69 PQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVYAT
Sbjct: 129 GNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGISHEQAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + P+A
Sbjct: 189 IAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKCP+L
Sbjct: 249 WHPDNRNAVIMCDLAGDMTPLLELDSAALRERLYTRRDALEADQSAVPLKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
P + + E ER GID +RCL+NL LLR ++R++ ++ + P ++S DVD +LYD
Sbjct: 309 APANTLRPEDAERLGIDRQRCLDNLALLRSNASVREKVVELFAEAPAFTASDDVDLRLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF DR M I TAP+ L L+L F+D RL L FRYRARNFP TL ++E+Q WL+
Sbjct: 369 GFFGYADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T R+++Y ++L +L +++ D+ K + ALY Y Q ++
Sbjct: 429 HRRAVFTPERLQDYLSELSNLYQQHEDDKEKMAQLKALYAYAQELV 474
>gi|238784349|ref|ZP_04628360.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
gi|238714777|gb|EEQ06778.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
Length = 476
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/467 (54%), Positives = 339/467 (72%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQG 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+AT
Sbjct: 130 GNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTRANGVEHLHAHDAMSDVHAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP+A
Sbjct: 190 IAMAKLVKQVQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP K++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKCP+L
Sbjct: 250 WHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDRLSAQDAAVPLKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ ER GID + CL NL LLRQ +R++ A++ +P+ + S DVD+QLY
Sbjct: 310 APAKTLLPENAERLGIDRQHCLRNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL+ E++ WL
Sbjct: 369 NGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTYSEQKRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR++ L +++Y +L+ +Y+ D+ K L+ AL++Y + ++
Sbjct: 429 EHRREALNPELVQDYVLQLEQFYNQYEDDKEKLALLKALFDYAKGLV 475
>gi|290508687|ref|ZP_06548058.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
gi|289778081|gb|EFD86078.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
Length = 474
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/466 (53%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LD+ L +RL+TS EL L PIK VHLNKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTSRAELGDLPAAPIKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + + +R GI +RCLEN LLR +R++ A+Y +P+ S++VD+QLY+
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 429 HRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|288934485|ref|YP_003438544.1| exodeoxyribonuclease I [Klebsiella variicola At-22]
gi|288889194|gb|ADC57512.1| Exodeoxyribonuclease I [Klebsiella variicola At-22]
Length = 474
Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/466 (53%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVH+SGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHISGMFGAARGNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + + ER GI +RCLEN LLR +R++ A+Y +P+ S++VD+QLY+
Sbjct: 310 QANTLRPQDAERLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 429 HRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|269138522|ref|YP_003295222.1| exonuclease I [Edwardsiella tarda EIB202]
gi|267984182|gb|ACY84011.1| exonuclease I [Edwardsiella tarda EIB202]
Length = 477
Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/469 (54%), Positives = 330/469 (70%), Gaps = 1/469 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+ ADDYLP P+AV I
Sbjct: 8 IQNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMI 67
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ AL G EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +
Sbjct: 68 TGITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAY 127
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SW NGNSRWDLLDV+R YA +GI WP + G SFKL+ L+ ANGIEH NAHDA AD
Sbjct: 128 SWQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMAD 187
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LI
Sbjct: 188 VYATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLI 247
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
AP+AWHP K++VI C+L D+ LD+ L +RL+T EL PVPIK VH+NKC
Sbjct: 248 APLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKC 307
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
P+L P ++ R G+D +RC +NL LL+Q + +RD+ +++ + P S DVDSQ
Sbjct: 308 PVLAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQ 367
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+D DRQ M I T P+ L L+L FSD R+ L FRYRARN+P TL E E++
Sbjct: 368 LYDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRR 427
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W +HR+ MLT R+++Y L+ L Y+ K L+ AL++Y + ++
Sbjct: 428 WQQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 476
>gi|304558543|gb|ADM41207.1| Exodeoxyribonuclease I [Edwardsiella tarda FL6-60]
Length = 475
Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/469 (54%), Positives = 330/469 (70%), Gaps = 1/469 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+ ADDYLP P+AV I
Sbjct: 6 IQNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMI 65
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ AL G EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +
Sbjct: 66 TGITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAY 125
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SW NGNSRWDLLDV+R YA +GI WP + G SFKL+ L+ ANGIEH NAHDA AD
Sbjct: 126 SWQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMAD 185
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LI
Sbjct: 186 VYATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLI 245
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
AP+AWHP K++VI C+L D+ LD+ L +RL+T EL PVPIK VH+NKC
Sbjct: 246 APLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
P+L P ++ R G+D +RC +NL LL+Q + +RD+ +++ + P S DVDSQ
Sbjct: 306 PVLAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQ 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+D DRQ M I T P+ L L+L FSD R+ L FRYRARN+P TL E E++
Sbjct: 366 LYDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W +HR+ MLT R+++Y L+ L Y+ K L+ AL++Y + ++
Sbjct: 426 WQQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 474
>gi|322613666|gb|EFY10606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620237|gb|EFY17106.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623283|gb|EFY20124.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322630488|gb|EFY27257.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632835|gb|EFY29580.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638832|gb|EFY35526.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640283|gb|EFY36945.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322647148|gb|EFY43647.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648974|gb|EFY45417.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653880|gb|EFY50204.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660987|gb|EFY57216.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322663072|gb|EFY59279.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322668517|gb|EFY64672.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322673348|gb|EFY69451.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322679134|gb|EFY75188.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322683229|gb|EFY79244.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322685901|gb|EFY81891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195188|gb|EFZ80369.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198756|gb|EFZ83856.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323202400|gb|EFZ87443.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323209215|gb|EFZ94151.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323213844|gb|EFZ98621.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216128|gb|EGA00858.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223218|gb|EGA07560.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323223733|gb|EGA08040.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323231339|gb|EGA15453.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323232569|gb|EGA16666.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323240988|gb|EGA25028.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323245593|gb|EGA29588.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323247623|gb|EGA31572.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251066|gb|EGA34940.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257464|gb|EGA41155.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323263357|gb|EGA46891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323266324|gb|EGA49813.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271468|gb|EGA54890.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
Length = 476
Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 336/466 (72%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L L VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDLAAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|168236215|ref|ZP_02661273.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194733944|ref|YP_002115153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194709446|gb|ACF88667.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197290623|gb|EDY29978.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 476
Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/470 (53%), Positives = 338/470 (71%), Gaps = 3/470 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV I
Sbjct: 8 VQNTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLI 67
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y W
Sbjct: 68 TGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAW 127
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA AD
Sbjct: 128 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMAD 187
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +
Sbjct: 188 VYATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWV 247
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKC
Sbjct: 248 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKC 307
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDS 358
P+L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+
Sbjct: 308 PVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDA 366
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q
Sbjct: 367 QLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQ 426
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WLEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 427 RWLEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|311278993|ref|YP_003941224.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
gi|308748188|gb|ADO47940.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
Length = 474
Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust.
Identities = 252/466 (54%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAALRTDGDFNVIGEPEVFYCKPADDYLPQPQAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW N
Sbjct: 70 PQEALAKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 HNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY YRNKN+L LID+ M PLVHVSGMFGA R NT+ IAP+A
Sbjct: 190 IAMAQLVKSRQPRLFDYLYTYRNKNKLATLIDVPQMKPLVHVSGMFGAWRGNTSWIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +L + +L RL+T+ L L VP+K VHLNKCP+L
Sbjct: 250 WHPDNRNAVIVVDLAGDMSPLLELTADELRDRLYTAKASLGDLAAVPVKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ ++CL+NL LLR +RD+ AI+ P+ SQ+VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQQCLDNLKLLRDNPQVRDKVVAIFADAAPFV-PSQNVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L+L F+D R+ +L F YRARNFP TL + E+Q WL+
Sbjct: 369 GFFSDADRAAMKILLETEPRNLPALDLTFADTRIEKLLFNYRARNFPGTLDDAEQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ LS +Y D+ K L+ L++Y Q ++
Sbjct: 429 HRREVFTPEFLQAYADELQLLSQQYAEDKAKLALLKTLWQYAQDIV 474
>gi|262040031|ref|ZP_06013293.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042608|gb|EEW43617.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 474
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + + +R GI +RCLEN LLR +R++ A+Y +P+ S++VD+QLY+
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 429 HRRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|204929131|ref|ZP_03220274.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|204321675|gb|EDZ06874.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
Length = 476
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 336/466 (72%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAETEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|238895590|ref|YP_002920325.1| exonuclease I [Klebsiella pneumoniae NTUH-K2044]
gi|238547907|dbj|BAH64258.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 474
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + + +R GI +RCLEN LLR +R++ A+Y +P+ S++VD+QLY+
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 429 HRRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|253688149|ref|YP_003017339.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754727|gb|ACT12803.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 475
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 256/466 (54%), Positives = 332/466 (71%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P+DDYLP+PEAV ITGIT
Sbjct: 9 FFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW N
Sbjct: 69 PQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA YA P+GI WP +DG SF+L+ L ANGI H AHDA +DVYAT
Sbjct: 129 GNSRWDLLDALRACYALRPEGIIWPENNDGLPSFRLEHLTKANGISHEQAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + P+A
Sbjct: 189 IAMAKLFKQAQPKLFEYLFTLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKCP+L
Sbjct: 249 WHPDNRNAVIMCDLAGDMTPLLELDSETLRERLYTRRDALEPDQSAVPLKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
P + + E ER ID +RCL+NL LLR T++R++ ++ + P ++S DVD +LYD
Sbjct: 309 APANTLRPEDAERLSIDRQRCLDNLALLRNNTSVREKVVELFAEAPAFAASDDVDLRLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D DR M I TAP+ L L+L F+D RL L FRYRARNFP TL ++E+Q WL+
Sbjct: 369 GFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T R+++Y ++L +L ++ D+ K + ALY Y Q ++
Sbjct: 429 HRRAVFTPERLQDYLSELSNLYQLHEDDKEKMAQLKALYAYAQELV 474
>gi|62180647|ref|YP_217064.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|167551009|ref|ZP_02344764.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|168259635|ref|ZP_02681608.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168818244|ref|ZP_02830244.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194443671|ref|YP_002041334.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|197247769|ref|YP_002147025.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|198243454|ref|YP_002216153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|224583437|ref|YP_002637235.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238913451|ref|ZP_04657288.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|62128280|gb|AAX65983.1| exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194402334|gb|ACF62556.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|197211472|gb|ACH48869.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197937970|gb|ACH75303.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|205323967|gb|EDZ11806.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205344805|gb|EDZ31569.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205351000|gb|EDZ37631.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|224467964|gb|ACN45794.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322715118|gb|EFZ06689.1| Exonuclease, RNase T and DNA polymerase III [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|326623899|gb|EGE30244.1| LPS-assembly lipoprotein RlpB [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 476
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 336/466 (72%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|200388584|ref|ZP_03215196.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|199605682|gb|EDZ04227.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
Length = 476
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 336/466 (72%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDTEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|152971008|ref|YP_001336117.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|150955857|gb|ABR77887.1| 3' --> 5' specific exonuclease I [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 474
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + + +R GI +RCLEN LLR +R++ A+Y +P+ S++VD+QLY+
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 429 HRRQVFTPAFLQAYADELQILYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|260598502|ref|YP_003211073.1| exonuclease I [Cronobacter turicensis z3032]
gi|260217679|emb|CBA32024.1| Exodeoxyribonuclease I [Cronobacter turicensis z3032]
Length = 480
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 246/465 (52%), Positives = 330/465 (70%), Gaps = 1/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFA +R D + I +VF+CKPADDYLP PEAV ITGIT
Sbjct: 15 FLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGIT 74
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G EA+F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW N
Sbjct: 75 PQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQN 134
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DG SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 135 DNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYAT 194
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P++F+YLY YR+K +L L+DI M PLVHVSGMFGA R NT+ IAP+A
Sbjct: 195 IAMAQLVKTRQPRMFDYLYTYRSKQKLATLVDIVQMKPLVHVSGMFGAWRGNTSWIAPIA 254
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +L++ L +RL+T L PVP+K VHLNKCP+L
Sbjct: 255 WHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALNDASPVPVKLVHLNKCPVLA 314
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
+ + E ER GID +RCL+NL +LR +R++ A++ + P + +VD+QLYDG
Sbjct: 315 QANTLRPEDAERLGIDRQRCLDNLKVLRDSPQVREKLVALFAEAPPFPPTDNVDAQLYDG 374
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TLSE+E++ WL H
Sbjct: 375 FFSDADRAAMRIVLETPPQNLPALDITFVDKRIGKLLFNYRARNFPGTLSEQEQERWLAH 434
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R+ + T ++ Y +L+ L +Y+ D+ K L+ ALY+Y Q ++
Sbjct: 435 RRDVFTPEFLQTYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 479
>gi|50121489|ref|YP_050656.1| exonuclease I [Pectobacterium atrosepticum SCRI1043]
gi|49612015|emb|CAG75464.1| exodeoxyribonuclease I [Pectobacterium atrosepticum SCRI1043]
Length = 475
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/466 (55%), Positives = 328/466 (70%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLP+PEAV ITGIT
Sbjct: 9 FFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW N
Sbjct: 69 PQIALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVYAT
Sbjct: 129 SNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ I P+A
Sbjct: 189 IAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWIVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKCP+L
Sbjct: 249 WHPDNRNAVIMCDLAGDMTPLLELDSDALRERLYTRRDALTADQSAVPLKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
P + + E R GID +RCL+NL LLR ++R++ A++ + P ++S DVD +LYD
Sbjct: 309 APANTLRPEDAARLGIDRQRCLDNLALLRNNADIREKVVALFAEVPAFAASDDVDLRLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q WL+
Sbjct: 369 GFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T R++ Y ++L L ++ D+ K + ALY Y Q ++
Sbjct: 429 HRRAVFTPERLQSYLSELSDLYQLHEDDKEKMTQLKALYAYAQDLV 474
>gi|296103672|ref|YP_003613818.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295058131|gb|ADF62869.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 474
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/466 (52%), Positives = 336/466 (72%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A GV EAEF+RRIH F+VP+TC++GYNNIRFDD +RNIFYRNFYD Y WSW N
Sbjct: 70 PQEAREKGVNEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLD+MRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 RNSRWDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T D L L VP+K VH+NKCP+L
Sbjct: 250 WHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKDALGDLPAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+ S++VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL+
Sbjct: 369 GFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQECWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T + Y +L+ L G+Y+G+E K+ L+ AL+ Y+Q ++
Sbjct: 429 HRRNVFTPEYLHGYAQELEMLYGQYEGNEEKQALLKALFRYVQEIV 474
>gi|16760997|ref|NP_456614.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|29141307|ref|NP_804649.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56413034|ref|YP_150109.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361958|ref|YP_002141595.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|213053400|ref|ZP_03346278.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213421859|ref|ZP_03354925.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
gi|213425574|ref|ZP_03358324.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213648908|ref|ZP_03378961.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|289829232|ref|ZP_06546844.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|25289114|pir||AF0763 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503295|emb|CAD02428.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136934|gb|AAO68498.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56127291|gb|AAV76797.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197093435|emb|CAR58890.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 476
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 335/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-ATSDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|323130390|gb|ADX17820.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
Length = 476
Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 335/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VPIK VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPIKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|168229383|ref|ZP_02654441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168466281|ref|ZP_02700151.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194472204|ref|ZP_03078188.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205353209|ref|YP_002227010.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207857502|ref|YP_002244153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|194458568|gb|EDX47407.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|195631242|gb|EDX49802.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|205272990|emb|CAR37938.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205335677|gb|EDZ22441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|206709305|emb|CAR33645.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326628296|gb|EGE34639.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 476
Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 335/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|161613258|ref|YP_001587223.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|161362622|gb|ABX66390.1| hypothetical protein SPAB_00968 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 476
Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 336/466 (72%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y ++ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAENKTKLGLLKSLWQYATEIV 476
>gi|16765397|ref|NP_461012.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|167990978|ref|ZP_02572077.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168242135|ref|ZP_02667067.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|194450582|ref|YP_002046116.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|16420598|gb|AAL20971.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|194408886|gb|ACF69105.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|205330564|gb|EDZ17328.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205338443|gb|EDZ25207.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|261247282|emb|CBG25107.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267994119|gb|ACY89004.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301158628|emb|CBW18140.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312913058|dbj|BAJ37032.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224713|gb|EFX49776.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|332989002|gb|AEF07985.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 476
Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 335/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|295098241|emb|CBK87331.1| Exodeoxyribonuclease I subunit C [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 478
Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/466 (52%), Positives = 334/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TGIT
Sbjct: 14 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTGIT 73
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW N
Sbjct: 74 PQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQN 133
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLD+MRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 134 RNSRWDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 193
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 194 IAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 253
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T + L L VP+K VH+NKCP+L
Sbjct: 254 WHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKEALGDLPAVPVKLVHINKCPVLA 313
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR +R++ AI+ +P+ S++VD+QLY+
Sbjct: 314 QANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFV-PSENVDAQLYN 372
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL+
Sbjct: 373 GFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWLQ 432
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T + Y +L+ L G+Y+G+ K+ L+ AL++Y Q ++
Sbjct: 433 HRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 478
>gi|291326156|ref|ZP_06123420.2| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
gi|291315456|gb|EFE55909.1| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
Length = 479
Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/460 (54%), Positives = 323/460 (70%), Gaps = 1/460 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE EVF+C PADDYLP PEAV ITGIT
Sbjct: 14 FFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIEEPEVFYCAPADDYLPQPEAVMITGIT 73
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF++RIH FSVPNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 74 PQVALSQGVNEAEFAKRIHAAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQQ 133
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA +A P+G+QWP +DG S +L+ L ANG+ H NAHDA +DV AT
Sbjct: 134 GNSRWDLLDTLRACFALRPEGLQWPENEDGLPSMRLEHLTKANGVAHENAHDAMSDVLAT 193
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L++ +P++F+Y Y RNKN++ +LIDI +TPLVHVSGMFGA RS +L+AP+A
Sbjct: 194 INMAKLLKAAQPRMFDYFYQLRNKNKISQLIDIVEITPLVHVSGMFGALRSYVSLVAPLA 253
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP K++VI C+LS D+ +LD QL RL+T EL G PVP+K VH+NKCPIL
Sbjct: 254 WHPDNKNAVIMCDLSADISPLVELDVQQLRTRLYTPKAELAGASPVPVKLVHINKCPILA 313
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDG 363
P + E ER G+D C+ NL LR+ +R++ ++++P + S DVD+Q+Y+G
Sbjct: 314 PEKTLRPEDAERTGVDRDLCMRNLETLRKNPEIRNKLIELFSEPQVFTESDDVDTQIYNG 373
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T+P+ L L L F D+R+ ELFFRY+ARN+P TLS E+Q WL+H
Sbjct: 374 FFSPSDRSTMDIIRETSPQNLPALELSFEDKRMKELFFRYKARNYPATLSYDEQQRWLQH 433
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
R+ + R+ EY ++Q L E++ DE + + AL Y
Sbjct: 434 RRDYFSEERLTEYMQQIQLLLVEHQHDEKRCQQLKALISY 473
>gi|206578810|ref|YP_002237569.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
gi|206567868|gb|ACI09644.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
Length = 474
Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/466 (53%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + +R GI +RCLEN LLR +R++ A+Y +P+ S++VD+QLY+
Sbjct: 310 QANTLRPLDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 429 HRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|212712795|ref|ZP_03320923.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
30120]
gi|212684487|gb|EEB44015.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
30120]
Length = 479
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/460 (54%), Positives = 326/460 (70%), Gaps = 1/460 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + I EVF+CKP DDYLP PEAV ITGIT
Sbjct: 14 FFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDYLPQPEAVMITGIT 73
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A+ +GV EAEF++RIHQ FSVPNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 74 PQIAMANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQQ 133
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA +A P+GI WP DDG S +L+ L ANG+ H NAHDA +DV AT
Sbjct: 134 GNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVSHENAHDAMSDVLAT 193
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L+++ +P++F+Y Y RNKN++ +LIDI +MTPLVHVSGMFGA RS +L+ P+A
Sbjct: 194 INMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVSLVTPLA 253
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP K++VI C+LSGDM L + +L +RL+T EL +PVPIK VH+NKCPIL
Sbjct: 254 WHPENKNAVIMCDLSGDMSPLLTLSADELRERLYTPKAELGDDLPVPIKLVHINKCPILA 313
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDG 363
PI+ + ER G+D C+ NL LLR+ ++R++ +++ S DVDSQ+Y+G
Sbjct: 314 PINTLRTVDAERTGLDRDLCMRNLELLRKNPDVRNKLIELFSVGQQFEESNDVDSQIYNG 373
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I TAP+ L L+L F D+R+ ELFFRY+ARN+P TLS E+Q WL+H
Sbjct: 374 FFSPSDRSTMDIIRETAPQNLPALDLSFEDKRMKELFFRYKARNYPSTLSYDEQQRWLQH 433
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
R+ T +R+ +Y ++Q L G + DE + + AL Y
Sbjct: 434 RRDYFTEARLTDYLQQIQLLMGVHHEDEKRCQQLKALVNY 473
>gi|330000618|ref|ZP_08303759.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
gi|328537942|gb|EGF64123.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
Length = 474
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITGIT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LD+ L +RL+T EL PIK VHLNKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDQPAAPIKLVHLNKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + + +R GI +RCLEN LLR +R++ A+Y +P+ S++VD+QLY+
Sbjct: 310 QANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFV-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 429 HRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|291618007|ref|YP_003520749.1| SbcB [Pantoea ananatis LMG 20103]
gi|291153037|gb|ADD77621.1| SbcB [Pantoea ananatis LMG 20103]
Length = 473
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 328/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG + DRPAQFAG+R D + + EVF+C+P DDYLP PEAV ITGIT
Sbjct: 8 FLFHDYETFGTSPSRDRPAQFAGLRTDSNFNPVGEPEVFYCRPPDDYLPQPEAVMITGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A GV EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y WSW N
Sbjct: 68 PQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+ H NAHDA +DVYAT
Sbjct: 128 GNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAMSDVYAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
LA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ + P+A
Sbjct: 188 LAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPLA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I +L+GDM LD+ L +RL+T EL +P+K VH+NKCP+L
Sbjct: 248 WHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHINKCPVLA 307
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + E R GID K CL+NL LRQ +R++ AI+ +P+T S DVD+QLYD
Sbjct: 308 PANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSD-DVDTQLYD 366
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q WL+
Sbjct: 367 GFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAEQQRWLQ 426
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++L +++ + +L+SL+ ++ D+ K + ALY Y Q ++
Sbjct: 427 HRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELV 472
>gi|317048759|ref|YP_004116407.1| exodeoxyribonuclease I [Pantoea sp. At-9b]
gi|316950376|gb|ADU69851.1| Exodeoxyribonuclease I [Pantoea sp. At-9b]
Length = 473
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/466 (53%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFAG+R D+ + I +VF+C+PADDYLP PEAV ITGIT
Sbjct: 8 FLFHDYETFGKSPSLDRPAQFAGLRTDKDFNAIGEPQVFYCQPADDYLPQPEAVMITGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A GV EA F+ RIH FS P TC++GYNN+RFDD +RNIFYRNF+D Y WSW N
Sbjct: 68 PQTAQARGVTEAAFAERIHGLFSEPQTCVVGYNNVRFDDEVTRNIFYRNFFDPYGWSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+ H AHDA +DVYAT
Sbjct: 128 GNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTKANGVAHEQAHDAMSDVYAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
LA+ L++EK+PKLFE+L+ +RNK +L LIDI M PLVHVSGMFGA+R NT+ + P+A
Sbjct: 188 LAMAKLVKEKQPKLFEFLFSHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPLA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I +L+GDM L +L +RL+T H EL VPIK VH+NKCP+L
Sbjct: 248 WHPDNRNALIVADLAGDMSPLLTLSPDELRERLYTRHSELGDQAAVPIKLVHINKCPVLA 307
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + E ER ID + CL NL LLRQ +R+ ++ +P+T S DVD+QLY+
Sbjct: 308 PANTLRPEDAERLNIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFTPSD-DVDAQLYN 366
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ + +T + L L+L F D+R+ L FRYRARNFP TL + E+Q WL+
Sbjct: 367 GFFSDADRAAMNIVRQTPAQNLPALDLTFDDKRIARLLFRYRARNFPGTLDDAEQQRWLQ 426
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR++ L R++ + +L+SL+ ++G+ K GL+ ALY Y Q ++
Sbjct: 427 HRREALNAERVQAFLLELESLASLHEGNAEKLGLLKALYLYAQELV 472
>gi|283832563|ref|ZP_06352304.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
gi|291072232|gb|EFE10341.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
Length = 474
Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW N
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNPAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL LLR+ +RD+ AI+ +P+ + S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLNLLRENPQVRDKVVAIFADAEPF-APSDNVDTQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL+
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWLD 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y N+LQ+LS +Y ++ K L+ +L++Y Q ++
Sbjct: 429 HRRQVFTPEFLQNYANELQTLSQQYADNKEKLMLLKSLWQYAQEIV 474
>gi|329298840|ref|ZP_08256176.1| exonuclease I [Plautia stali symbiont]
Length = 473
Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/466 (54%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFAG+R D+ + + +VF+C+ ADDYLP PEAV ITGIT
Sbjct: 8 FLFHDYETFGKSPSLDRPAQFAGLRTDKAFNAVGEPQVFYCQLADDYLPQPEAVMITGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A GV E EF++RIH FS P TC+IGYNN+RFDD +RNIFYRNF D Y WSW N
Sbjct: 68 PQVANARGVQEVEFAQRIHALFSEPQTCVIGYNNVRFDDEVTRNIFYRNFIDPYGWSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+ H AHDA +DVYAT
Sbjct: 128 GNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTQANGVAHEQAHDAMSDVYAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
LA+ L++EK+PKLFE+L+ +RNK +L LIDI M PLVHVSGMFGA+R NT+ I P+A
Sbjct: 188 LAMAKLVQEKQPKLFEFLFTHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWIVPLA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP K+++I +L+GDM L +L +RL+T H +L L VPIK VH+NKCP+L
Sbjct: 248 WHPDNKNALIVADLAGDMTPLLTLSPDELRERLYTRHSDLGDLPAVPIKLVHINKCPVLA 307
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + + E ER GID + CL NL LLRQ +R+ ++ +P+T S+DVD+QLYD
Sbjct: 308 PANTLRPEDAERLGIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFT-PSEDVDAQLYD 366
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ + +T P+ L L+L F D+R+ +L FRYRARNFP TL +KE+Q WL+
Sbjct: 367 GFFSDADRAGMNILRQTPPQNLPALDLTFEDKRIAKLLFRYRARNFPGTLDDKEQQRWLQ 426
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ L R++ + +L+SL+ ++GD K + ALY Y Q ++
Sbjct: 427 HCREQLNAERVKAFLLELESLASLHEGDAEKMAQLKALYLYAQELV 472
>gi|284919774|emb|CAX65551.1| putative exonuclease I [Enterobacter hormaechei]
Length = 502
Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 333/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TGIT
Sbjct: 38 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTGIT 97
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW N
Sbjct: 98 PQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQN 157
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLD+MR YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 158 RNSRWDLLDIMRVCYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 217
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 218 IAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 277
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +L+S L +RL+T + L L VP+K VH+NKCP+L
Sbjct: 278 WHPDNRNAVIMVDLAGDISPLLELNSDTLRERLYTPKEALGDLPAVPVKLVHINKCPVLA 337
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR +R++ AI+ +P+ S++VD+QLY+
Sbjct: 338 QANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFV-PSENVDAQLYN 396
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL+
Sbjct: 397 GFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWLQ 456
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T + Y +L+ L G+Y+G+ K+ L+ AL++Y Q ++
Sbjct: 457 HRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 502
>gi|156933393|ref|YP_001437309.1| exonuclease I [Cronobacter sakazakii ATCC BAA-894]
gi|156531647|gb|ABU76473.1| hypothetical protein ESA_01206 [Cronobacter sakazakii ATCC BAA-894]
Length = 491
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/465 (52%), Positives = 325/465 (69%), Gaps = 1/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ +LDRPAQFA +R D + I +VF+CKPADDYLP PEAV ITGIT
Sbjct: 26 FLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGIT 85
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G EAEF+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW N
Sbjct: 86 PQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQN 145
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DG SF+L+ L +ANGIEH NAHDA ADVYAT
Sbjct: 146 DNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYAT 205
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P++F+YLY YR+K +L LID M PLVHVSGMFGA R NT+ IAPVA
Sbjct: 206 IAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPVA 265
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +L++ L +RL+T L VP+K VHLNKCP+L
Sbjct: 266 WHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCPVLA 325
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYDG 363
+ + E ER GID + CL NL +LR +R++ A++ + P + +VD+QLYDG
Sbjct: 326 QANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQLYDG 385
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TLSE+E+ WL H
Sbjct: 386 FFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQARWLAH 445
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R+ + T ++ Y +L+ L +Y+ D+ K L+ ALY+Y Q ++
Sbjct: 446 RRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 490
>gi|237732065|ref|ZP_04562546.1| exonuclease I [Citrobacter sp. 30_2]
gi|226907604|gb|EEH93522.1| exonuclease I [Citrobacter sp. 30_2]
Length = 474
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW N
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHTNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+TS +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKVLRENPQIRDKVVAIFADAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL+
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWLD 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T +++Y N+LQ LS +Y ++ K L+ +L++Y + ++
Sbjct: 429 HRRQVFTPEFLQDYANELQLLSQQYADNKEKLMLLKSLWQYAEEIV 474
>gi|242239639|ref|YP_002987820.1| exonuclease I [Dickeya dadantii Ech703]
gi|242131696|gb|ACS85998.1| Exodeoxyribonuclease I [Dickeya dadantii Ech703]
Length = 476
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 251/466 (53%), Positives = 325/466 (69%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAG+R D+ + I V +C+PADDYLPDPEAV ITGIT
Sbjct: 10 FFIHDYETFGKHPAKDRPAQFAGIRTDQDFNVIGEPVVIYCQPADDYLPDPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ E +F+R+IH FS P TCI+GYNNIRFDD SRN+FYRNF D Y +SW N
Sbjct: 70 PQLASSKGIGEVDFARQIHDAFSTPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA YA P+GI WP ++G SF+L+ L ANGIEH +AHDA +DVYAT
Sbjct: 130 GNSRWDLLDALRACYALRPEGIVWPENEEGFPSFRLEHLTRANGIEHEHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L ++ +P+LF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P+A
Sbjct: 190 IAMARLFKQTQPRLFDYLYQLRNKNKVNALIDIAEMKPLVHVSGMFGAARGNTSWIVPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD+ +L + L RL+T D L + PVPIK VH+NKCP+L
Sbjct: 250 WHPENRNAVIVCDLAGDIDPLLNLSADALRTRLYTRRDLLGENESPVPIKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYD 362
P + E R G+D +RCL+NL LLRQ +R++ A++ + P + DVD QLYD
Sbjct: 310 APAATLRPEDAARLGVDRQRCLDNLKLLRQHPLVREKVVALFADAPAFEPAADVDLQLYD 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D DR M I TAP+ L L L F+DRR+ EL FRYRARNFP TL ++E+Q WL
Sbjct: 370 GFFGDADRAAMTIIRETAPQHLPALKLQFADRRMEELLFRYRARNFPGTLDDQEQQRWLR 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T R++ Y L+SL + DE K L+ AL+ Y Q ++
Sbjct: 430 HRREIFTPERLQSYSETLESLYQIHADDEKKIALLKALFTYAQQLV 475
>gi|284007268|emb|CBA72582.1| exodeoxyribonuclease I [Arsenophonus nasoniae]
Length = 474
Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust.
Identities = 242/465 (52%), Positives = 330/465 (70%), Gaps = 3/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG+ ALDRPAQFAG+R D + IE ++F+C PADDYLP P+AV ITGIT
Sbjct: 9 FLFHDYETFGQHPALDRPAQFAGIRTDSNFNIIEDPQIFYCAPADDYLPQPQAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A+ G+ EAEF++RIH FS+ N+CI+GYNNIRFDD +R+IFYRNFYD Y +SW
Sbjct: 69 PQYAIAHGINEAEFAKRIHGIFSIANSCILGYNNIRFDDEVTRHIFYRNFYDPYAYSWQQ 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA PDGI WPS D+G SFKL+ L + NGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACYALRPDGINWPSNDEGLPSFKLEHLTVVNGIEHANAHDATADVLAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LI++ +PK+F+Y + RNKN++++LIDI MTPLVHVSGMFGA R+NT+LIAP+A
Sbjct: 189 IEMAKLIKQAQPKMFDYFFRLRNKNEVKQLIDIIAMTPLVHVSGMFGAIRANTSLIAPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I C+L+ D+ LDS L +RL+T DEL G + +PIK +H+NKCPIL
Sbjct: 249 WHPENRNAIIACDLAADISPLLTLDSDTLRQRLYTPKDELAGELAIPIKLIHINKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQLYD 362
P + + +R +D C NL +LRQ + +RD+ ++ +P+ +++ DVD+ LY
Sbjct: 309 PANTLRTADAQRIALDLDVCQNNLAILRQHSEVRDKVIRLFTEAQPFPAAT-DVDAMLYS 367
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D DR M I +T P+ L L+L F D R+ +LFFRYRARN+P TL+E+E+ WL
Sbjct: 368 GFFGDNDRSTMAIIRQTLPQNLPALDLKFDDPRMRQLFFRYRARNYPATLTEQEQLAWLH 427
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
HR+ LT +I +Y ++ L E++ ++ K + AL +Y +
Sbjct: 428 HRRDRLTCEKISQYLQTIEQLFAEHQENKEKCQQLKALVDYANQI 472
>gi|288549827|ref|ZP_05968320.2| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
gi|288317556|gb|EFC56494.1| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
Length = 478
Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV +TGIT
Sbjct: 14 FLFHDYETFGTHPALDRPAQFAAIRTDEDFNIIGEPEVFYCKPADDYLPQPGAVMVTGIT 73
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW N
Sbjct: 74 PQEARDKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQN 133
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLD+MRA +A P+GI WP ++G TSF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 134 RNSRWDLLDIMRACHALRPEGITWPENEEGLTSFRLEHLTRANGIEHSNAHDAMADVYAT 193
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ +P+LF+YL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 194 IAMAKLVKTAQPRLFDYLLSHRSKQKLITLIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 253
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T D L + VP+K VH+NKCP+L
Sbjct: 254 WHPDNRNAVIMVDLAGDISPLLELDSDALRERLYTPKDALGDVPAVPVKLVHINKCPVLA 313
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR +R++ AI+ +P+ S++VD+QLY+
Sbjct: 314 QANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFV-PSENVDAQLYN 372
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL+
Sbjct: 373 GFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWLQ 432
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T ++ Y +L+ L Y GD K+ + ALY+Y+Q ++
Sbjct: 433 HRRNIFTPEFLQRYAEELEMLYSHYNGDAEKQAQLKALYQYVQEIV 478
>gi|325497751|gb|EGC95610.1| exonuclease I [Escherichia fergusonii ECD227]
Length = 475
Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust.
Identities = 246/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E ER GID + CL+NL +LR+ +RD+ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 430 HRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 475
>gi|324114057|gb|EGC08030.1| exonuclease [Escherichia fergusonii B253]
Length = 474
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E ER GID + CL+NL +LR+ +RD+ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 429 HRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|146312271|ref|YP_001177345.1| exonuclease I [Enterobacter sp. 638]
gi|145319147|gb|ABP61294.1| Exodeoxyribonuclease I subunit C [Enterobacter sp. 638]
Length = 476
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 328/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG +LDRP+QFA +R D + I EVF+CKPADDYLP P AV +TGIT
Sbjct: 12 FLFHDYETFGTSPSLDRPSQFAAIRTDADFTIIGEPEVFYCKPADDYLPQPGAVIVTGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RN+ YRNFYD Y WSW N
Sbjct: 72 PQEAREKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNVLYRNFYDPYAWSWQN 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 RNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLFEYL +RNK +L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 192 IEMAKRVKTAQPKLFEYLLSHRNKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L RL+T EL VP+K VH+NKCP+L
Sbjct: 252 WHPDNRNAVIMVDLAGDITPLLELDSDALRARLYTPKSELGEDAAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E ER GI+ ++CL+NL +LR +RD+ AI+ +P+ S +VD+QLY+
Sbjct: 312 QANTLRPEDAERLGINRQQCLDNLKVLRDNPQVRDKVVAIFAEAEPFVPSD-NVDAQLYN 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL+
Sbjct: 371 GFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDESEQERWLQ 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T ++ Y +L+ L +Y+GD K+ L+ ALY+Y Q ++
Sbjct: 431 HRRNVFTPEYLQCYAQELEMLFTQYEGDAEKQNLLKALYQYAQEIV 476
>gi|157145042|ref|YP_001452361.1| exonuclease I [Citrobacter koseri ATCC BAA-895]
gi|157082247|gb|ABV11925.1| hypothetical protein CKO_00773 [Citrobacter koseri ATCC BAA-895]
Length = 474
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFASIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA+F+RRIH F+VP TC++GYNN+RFDD +RNI YRNFYD Y WSW +
Sbjct: 70 PQEARDKGENEADFARRIHSLFTVPKTCVVGYNNVRFDDEVTRNILYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKSRQPRLFDYLYTHRNKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GDM +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDMSPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR +RD+ AI+ +P+T S++VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKVVAIFAEAEPFT-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDETEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y +LQ L +Y D+ K L+ +L++Y + ++
Sbjct: 429 HRRQVFTPEFLQRYAEELQMLYQQYADDKEKLALLKSLWQYAEEIV 474
>gi|218549424|ref|YP_002383215.1| exonuclease I [Escherichia fergusonii ATCC 35469]
gi|218356965|emb|CAQ89597.1| exonuclease I [Escherichia fergusonii ATCC 35469]
Length = 474
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E ER GID + CL+NL +LR+ +RD+ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 429 HRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|161502767|ref|YP_001569879.1| exonuclease I [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160864114|gb|ABX20737.1| hypothetical protein SARI_00818 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 476
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/465 (52%), Positives = 329/465 (70%), Gaps = 1/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + + +VF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIVGEPDVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEACEKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWD+LDVMRA YA P+GI WP DDG SF+L+ L AN IEH NAHDA ADVYAT
Sbjct: 132 ENSRWDILDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANDIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L RL+T+ +L VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRDRLYTAKADLGNNAAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLYDG 363
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ + SS D VD+QLYDG
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFSSPDNVDAQLYDG 371
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL H
Sbjct: 372 FFSDSDRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLAH 431
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 432 RRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|227329384|ref|ZP_03833408.1| exonuclease I [Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 475
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/466 (54%), Positives = 330/466 (70%), Gaps = 2/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P+DDYLP+PEAV ITGIT
Sbjct: 9 FFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW N
Sbjct: 69 PQVALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVYAT
Sbjct: 129 GNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L ++ +PKLF+YL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + P+A
Sbjct: 189 IAMAKLFKQAQPKLFDYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKCP+L
Sbjct: 249 WHPDNRNAVIMCDLAGDMTPLLELDSEALRERLYTRRDALEANQSAVPLKLVHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI-YNKPYTSSSQDVDSQLYD 362
P + + E ER GID +RCL+NL +LR ++R++ + + ++S DVD +LYD
Sbjct: 309 APANTLRPEDAERLGIDRQRCLDNLAVLRNNASVREKVVELFADASAFAASDDVDLRLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q WL+
Sbjct: 369 GFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T ++ Y ++L +L ++ D+ K + ALY Y Q ++
Sbjct: 429 HRRAVFTPEHLQSYLSELNNLYQLHEDDKEKMAQLKALYAYAQELV 474
>gi|323977819|gb|EGB72905.1| exonuclease [Escherichia coli TW10509]
Length = 474
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP PEAV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|170769782|ref|ZP_02904235.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
gi|170121396|gb|EDS90327.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
Length = 475
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 333/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I E+F+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEIFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VPNTCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFATRIHSLFTVPNTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAIAKLVKTRQPRLFDYLYTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQSYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|253773058|ref|YP_003035889.1| exonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162000|ref|YP_003045108.1| exonuclease I [Escherichia coli B str. REL606]
gi|300930717|ref|ZP_07146095.1| exonuclease [Escherichia coli MS 187-1]
gi|242377657|emb|CAQ32417.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli BL21(DE3)]
gi|253324102|gb|ACT28704.1| Exodeoxyribonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253973901|gb|ACT39572.1| exonuclease I [Escherichia coli B str. REL606]
gi|253978095|gb|ACT43765.1| exonuclease I [Escherichia coli BL21(DE3)]
gi|300461438|gb|EFK24931.1| exonuclease [Escherichia coli MS 187-1]
Length = 475
Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 475
>gi|194431379|ref|ZP_03063671.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
gi|194420204|gb|EDX36281.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
gi|332091578|gb|EGI96659.1| exodeoxyribonuclease I [Shigella dysenteriae 155-74]
Length = 475
Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E ER GID + CL+NL +LR+ +RD+ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+R+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 YRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|293395284|ref|ZP_06639569.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
gi|291422241|gb|EFE95485.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
Length = 453
Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/453 (54%), Positives = 331/453 (73%), Gaps = 4/453 (0%)
Query: 19 LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEF 78
+DRPAQFAGVR D + IE V +C PADDYLPDPEAV ITGITPQ+AL GV EAEF
Sbjct: 1 MDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPEAVMITGITPQEALAKGVCEAEF 60
Query: 79 SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI 138
+R+IHQ FSVP TCI+GYNNIRFDD SRNIFYR+FYD Y +SW NGNSRWDLLDVMRA
Sbjct: 61 ARQIHQAFSVPGTCIVGYNNIRFDDEVSRNIFYRSFYDPYAYSWQNGNSRWDLLDVMRAC 120
Query: 139 YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
YA P+GI WP DDG SF+L+ L ANG+ H AHDA +DV+AT+A+ L+R+ +P+L
Sbjct: 121 YALRPEGIVWPENDDGFPSFRLEHLTRANGVAHEQAHDAMSDVHATIAMAKLVRQAQPRL 180
Query: 199 FEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNL 258
F+YL +RNK++L L+DI MTPLVHVSGMFGA+RSNT+ +AP+AWHP K+++I C+L
Sbjct: 181 FDYLLQHRNKHKLNALVDIAEMTPLVHVSGMFGAARSNTSWVAPLAWHPDNKNALIVCDL 240
Query: 259 SGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPILMPIDYCKKEHFERW 317
+GDM +LD+ QL +RL+T D L PVPIK VH+NKCP+L P E+ +R
Sbjct: 241 AGDMTPLLELDADQLRERLYTRRDRLSADRPPVPIKLVHINKCPVLAPAKTLLPENADRL 300
Query: 318 GIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYDGFFADVDRQIMDR 375
GID + CL NL +LRQ +R++ A+Y +P+ ++S DVD++LYDGFF+D D+ M
Sbjct: 301 GIDRQACLNNLQILRQHPQVREKVVALYADAEPF-AASDDVDARLYDGFFSDADKAAMKI 359
Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435
I +T P+ L L+L F+D R+ EL FR+RARN+P+TL + E++ WL+HR+ L+ +++
Sbjct: 360 IQQTKPQNLPALDLTFNDDRMQELLFRFRARNYPNTLDDGEQRRWLQHRQTALSAEKVQS 419
Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
Y +L++L ++ D K L+ +L++Y + ++
Sbjct: 420 YVLQLEALYNLHEADSAKLALLKSLFDYGKQLV 452
>gi|256022296|ref|ZP_05436161.1| exonuclease I [Escherichia sp. 4_1_40B]
gi|301329562|ref|ZP_07222343.1| exonuclease [Escherichia coli MS 78-1]
gi|300844319|gb|EFK72079.1| exonuclease [Escherichia coli MS 78-1]
Length = 474
Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|300936684|ref|ZP_07151588.1| exonuclease [Escherichia coli MS 21-1]
gi|300458265|gb|EFK21758.1| exonuclease [Escherichia coli MS 21-1]
Length = 474
Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|307312423|ref|ZP_07592057.1| Exodeoxyribonuclease I [Escherichia coli W]
gi|306907594|gb|EFN38097.1| Exodeoxyribonuclease I [Escherichia coli W]
gi|315061286|gb|ADT75613.1| exonuclease I [Escherichia coli W]
gi|323378134|gb|ADX50402.1| Exodeoxyribonuclease I [Escherichia coli KO11]
Length = 475
Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ + +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|331668711|ref|ZP_08369559.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA271]
gi|331063905|gb|EGI35816.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA271]
Length = 474
Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ + +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|300926502|ref|ZP_07142295.1| exonuclease [Escherichia coli MS 182-1]
gi|300417463|gb|EFK00774.1| exonuclease [Escherichia coli MS 182-1]
Length = 499
Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 35 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 94
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 95 PQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 154
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 155 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 214
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 215 IAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 274
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 275 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 334
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 335 QANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 393
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 394 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 453
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 454 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|301050038|ref|ZP_07196952.1| exonuclease [Escherichia coli MS 185-1]
gi|300298222|gb|EFJ54607.1| exonuclease [Escherichia coli MS 185-1]
Length = 491
Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|323956180|gb|EGB51931.1| exonuclease [Escherichia coli H263]
Length = 474
Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|215487234|ref|YP_002329665.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
gi|312967244|ref|ZP_07781460.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
gi|215265306|emb|CAS09701.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
gi|312288052|gb|EFR15956.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
Length = 475
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|222033783|emb|CAP76524.1| exodeoxyribonuclease I [Escherichia coli LF82]
gi|281179112|dbj|BAI55442.1| exonuclease I [Escherichia coli SE15]
gi|312946641|gb|ADR27468.1| exonuclease I [Escherichia coli O83:H1 str. NRG 857C]
gi|320193300|gb|EFW67938.1| Exodeoxyribonuclease I [Escherichia coli WV_060327]
Length = 475
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|110642225|ref|YP_669955.1| exonuclease I [Escherichia coli 536]
gi|161486193|ref|NP_754426.2| exonuclease I [Escherichia coli CFT073]
gi|191170056|ref|ZP_03031610.1| exodeoxyribonuclease I [Escherichia coli F11]
gi|227887062|ref|ZP_04004867.1| exodeoxyribonuclease I [Escherichia coli 83972]
gi|110343817|gb|ABG70054.1| exodeoxyribonuclease I [Escherichia coli 536]
gi|190909572|gb|EDV69157.1| exodeoxyribonuclease I [Escherichia coli F11]
gi|227835412|gb|EEJ45878.1| exodeoxyribonuclease I [Escherichia coli 83972]
gi|294493683|gb|ADE92439.1| exodeoxyribonuclease I [Escherichia coli IHE3034]
gi|307554081|gb|ADN46856.1| C-terminal part of exodeoxyribonuclease I [Escherichia coli ABU
83972]
Length = 475
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|323940907|gb|EGB37095.1| exonuclease [Escherichia coli E482]
Length = 474
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +LSGD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|237704470|ref|ZP_04534951.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
gi|300974061|ref|ZP_07172435.1| exonuclease [Escherichia coli MS 200-1]
gi|300986935|ref|ZP_07177911.1| exonuclease [Escherichia coli MS 45-1]
gi|26108790|gb|AAN80993.1|AE016762_246 Exodeoxyribonuclease I [Escherichia coli CFT073]
gi|226900836|gb|EEH87095.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
gi|300308958|gb|EFJ63478.1| exonuclease [Escherichia coli MS 200-1]
gi|300407821|gb|EFJ91359.1| exonuclease [Escherichia coli MS 45-1]
gi|315285605|gb|EFU45047.1| exonuclease [Escherichia coli MS 110-3]
gi|315295233|gb|EFU54568.1| exonuclease [Escherichia coli MS 153-1]
gi|324015752|gb|EGB84971.1| exonuclease [Escherichia coli MS 60-1]
Length = 491
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|331658092|ref|ZP_08359054.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA206]
gi|331056340|gb|EGI28349.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA206]
Length = 474
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 332/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|282600282|ref|ZP_05973706.2| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
gi|282565948|gb|EFB71483.1| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
Length = 479
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/460 (54%), Positives = 320/460 (69%), Gaps = 1/460 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + I+ EVF+CKP DDYLP PEAV ITGIT
Sbjct: 14 FFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCKPTDDYLPQPEAVMITGIT 73
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A +GV EAEF++RIHQ FS PNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 74 PQIAQANGVNEAEFAKRIHQSFSTPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQQ 133
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA +A P+GI WP DDG S +L+ L ANG+ H NAHDA +DV AT
Sbjct: 134 GNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVAHENAHDAMSDVLAT 193
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L+++ +P++F+Y Y RNKN++ +LIDI MTPLVHVSGMFGA RS +L+AP+A
Sbjct: 194 INMAKLLKQAQPRMFDYFYQLRNKNKVSQLIDIVEMTPLVHVSGMFGALRSYVSLVAPLA 253
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP K++VI C+LS DM L++ +L +RL+T EL +PVPIK VH+NKCPIL
Sbjct: 254 WHPDNKNAVIMCDLSADMSPLLTLNADELRERLYTPKAELGDALPVPIKLVHINKCPILA 313
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDG 363
P + ER GID CL NL +LR+ ++R++ I++ S DVD Q+Y G
Sbjct: 314 PEKTLRTVDAERTGIDRDLCLRNLEILRKNPDVRNKLIEIFSVDQQFEESNDVDRQIYSG 373
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I TAP+ L L+L F D+R+ ELFFRY+ARN+P TLS E+Q WL+H
Sbjct: 374 FFSPSDRSTMDIIRETAPQNLPGLDLSFEDKRMKELFFRYKARNYPATLSYDEQQRWLQH 433
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
R+ T +R+ EY ++Q L + DE + + AL Y
Sbjct: 434 RRDYFTEARLTEYMQQIQLLMDIHHEDEKRCQQLKALVSY 473
>gi|331673547|ref|ZP_08374310.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA280]
gi|331068820|gb|EGI40212.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA280]
Length = 491
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|300824755|ref|ZP_07104860.1| exonuclease [Escherichia coli MS 119-7]
gi|300522742|gb|EFK43811.1| exonuclease [Escherichia coli MS 119-7]
Length = 499
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 35 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 94
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 95 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 154
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 155 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 214
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 215 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 274
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 275 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 334
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 335 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 393
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 394 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 453
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 454 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|331683697|ref|ZP_08384293.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H299]
gi|331078649|gb|EGI49851.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H299]
Length = 474
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|323936909|gb|EGB33192.1| exonuclease [Escherichia coli E1520]
Length = 474
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFAHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|197263773|ref|ZP_03163847.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197242028|gb|EDY24648.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
Length = 476
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 334/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYD
Sbjct: 312 QANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYD 370
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 371 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLE 430
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ L++Y ++
Sbjct: 431 HRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKLLWQYATEIV 476
>gi|324016993|gb|EGB86212.1| exonuclease [Escherichia coli MS 117-3]
Length = 499
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 35 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 94
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 95 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 154
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 155 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 214
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 215 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 274
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 275 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 334
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 335 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 393
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 394 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 453
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 454 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|300920252|ref|ZP_07136698.1| exonuclease [Escherichia coli MS 115-1]
gi|301018905|ref|ZP_07183135.1| exonuclease [Escherichia coli MS 196-1]
gi|299882459|gb|EFI90670.1| exonuclease [Escherichia coli MS 196-1]
gi|300412754|gb|EFJ96064.1| exonuclease [Escherichia coli MS 115-1]
Length = 499
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 35 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 94
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 95 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 154
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 155 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 214
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 215 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 274
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 275 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 334
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 335 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 393
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 394 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 453
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 454 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|218558892|ref|YP_002391805.1| exonuclease I [Escherichia coli S88]
gi|218365661|emb|CAR03398.1| exonuclease I [Escherichia coli S88]
Length = 475
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGIHWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|170682338|ref|YP_001743128.1| exonuclease I [Escherichia coli SMS-3-5]
gi|301019172|ref|ZP_07183372.1| exonuclease [Escherichia coli MS 69-1]
gi|170520056|gb|ACB18234.1| exodeoxyribonuclease I [Escherichia coli SMS-3-5]
gi|300399365|gb|EFJ82903.1| exonuclease [Escherichia coli MS 69-1]
Length = 475
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E ER GI + CL+NL +LR+ +RD+ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDAERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV 475
>gi|191167705|ref|ZP_03029513.1| exodeoxyribonuclease I [Escherichia coli B7A]
gi|209919475|ref|YP_002293559.1| exonuclease I [Escherichia coli SE11]
gi|190902218|gb|EDV61959.1| exodeoxyribonuclease I [Escherichia coli B7A]
gi|209912734|dbj|BAG77808.1| exonuclease I [Escherichia coli SE11]
gi|320198703|gb|EFW73303.1| Exodeoxyribonuclease I [Escherichia coli EC4100B]
Length = 475
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|309797270|ref|ZP_07691665.1| exonuclease [Escherichia coli MS 145-7]
gi|308119145|gb|EFO56407.1| exonuclease [Escherichia coli MS 145-7]
Length = 475
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|324119041|gb|EGC12930.1| exonuclease [Escherichia coli E1167]
Length = 474
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|218699399|ref|YP_002407028.1| exonuclease I [Escherichia coli IAI39]
gi|306814865|ref|ZP_07449027.1| exonuclease I [Escherichia coli NC101]
gi|218369385|emb|CAR17142.1| exonuclease I [Escherichia coli IAI39]
gi|305852259|gb|EFM52711.1| exonuclease I [Escherichia coli NC101]
gi|323187688|gb|EFZ72989.1| exodeoxyribonuclease I [Escherichia coli RN587/1]
gi|324008954|gb|EGB78173.1| exonuclease [Escherichia coli MS 57-2]
Length = 475
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|218695636|ref|YP_002403303.1| exonuclease I [Escherichia coli 55989]
gi|218352368|emb|CAU98142.1| exonuclease I [Escherichia coli 55989]
Length = 475
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|117624215|ref|YP_853128.1| exonuclease I [Escherichia coli APEC O1]
gi|115513339|gb|ABJ01414.1| exonuclease I [Escherichia coli APEC O1]
Length = 491
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 491
>gi|323961779|gb|EGB57380.1| exonuclease [Escherichia coli H489]
Length = 474
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|323951765|gb|EGB47639.1| exonuclease [Escherichia coli H252]
Length = 474
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 474
>gi|293446370|ref|ZP_06662792.1| exodeoxyribonuclease I [Escherichia coli B088]
gi|291323200|gb|EFE62628.1| exodeoxyribonuclease I [Escherichia coli B088]
Length = 475
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQCWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|323948385|gb|EGB44370.1| exonuclease [Escherichia coli H120]
Length = 474
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|256017814|ref|ZP_05431679.1| exonuclease I [Shigella sp. D9]
Length = 475
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ + P+A
Sbjct: 191 IAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVVPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|331647660|ref|ZP_08348752.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M605]
gi|331043384|gb|EGI15522.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M605]
Length = 491
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|331653435|ref|ZP_08354436.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M718]
gi|331048284|gb|EGI20360.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M718]
Length = 491
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|320177928|gb|EFW52912.1| Exodeoxyribonuclease I [Shigella boydii ATCC 9905]
Length = 475
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L + L+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLREHLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E ER GID + CL+NL +LR+ +RD+ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+R+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 YRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|327253143|gb|EGE64797.1| exodeoxyribonuclease I [Escherichia coli STEC_7v]
Length = 475
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|323968146|gb|EGB63555.1| exonuclease [Escherichia coli M863]
Length = 474
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|332278835|ref|ZP_08391248.1| exonuclease I [Shigella sp. D9]
gi|332101187|gb|EGJ04533.1| exonuclease I [Shigella sp. D9]
Length = 491
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ + P+A
Sbjct: 207 IAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVVPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|300898614|ref|ZP_07116941.1| exonuclease [Escherichia coli MS 198-1]
gi|300357710|gb|EFJ73580.1| exonuclease [Escherichia coli MS 198-1]
Length = 499
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 35 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 94
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 95 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 154
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 155 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 214
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 215 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 274
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 275 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 334
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 335 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 393
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 394 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 453
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 454 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 499
>gi|323183799|gb|EFZ69190.1| exodeoxyribonuclease I [Escherichia coli 1357]
gi|332092391|gb|EGI97464.1| exodeoxyribonuclease I [Shigella boydii 5216-82]
Length = 475
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|309787899|ref|ZP_07682509.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
gi|308924298|gb|EFP69795.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
Length = 475
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA Y P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPETLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|16129952|ref|NP_416515.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|89108831|ref|AP_002611.1| exonuclease I [Escherichia coli str. K-12 substr. W3110]
gi|170081641|ref|YP_001730961.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
gi|238901201|ref|YP_002926997.1| exonuclease I [Escherichia coli BW2952]
gi|462029|sp|P04995|EX1_ECOLI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|405954|gb|AAA16417.1| exonuclease I [Escherichia coli]
gi|1736685|dbj|BAA15839.1| exonuclease I [Escherichia coli str. K12 substr. W3110]
gi|1788321|gb|AAC75072.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|89330228|emb|CAJ84171.1| exodeoxyribonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|169889476|gb|ACB03183.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
gi|238861050|gb|ACR63048.1| exonuclease I [Escherichia coli BW2952]
gi|260448888|gb|ACX39310.1| Exodeoxyribonuclease I [Escherichia coli DH1]
gi|315136644|dbj|BAJ43803.1| exonuclease I [Escherichia coli DH1]
gi|315618014|gb|EFU98606.1| exodeoxyribonuclease I [Escherichia coli 3431]
Length = 475
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|290475866|ref|YP_003468758.1| exonuclease I [Xenorhabdus bovienii SS-2004]
gi|289175191|emb|CBJ81994.1| exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase
[Xenorhabdus bovienii SS-2004]
Length = 475
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/464 (53%), Positives = 329/464 (70%), Gaps = 2/464 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F ++DYETFG+ ALDRPAQFAG+R D + IE V +C PADDYLPDPEAV IT
Sbjct: 6 TPTFYVHDYETFGKHPALDRPAQFAGIRTDSDFNIIEDPLVVYCLPADDYLPDPEAVMIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL+ GV EAEF+R+IH+ FS PNTCIIGYNNIRFDD SRNIFYRNFYD Y +S
Sbjct: 66 GITPQLALKKGVNEAEFARQIHEAFSKPNTCIIGYNNIRFDDEVSRNIFYRNFYDPYAYS 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP +DG SFKL++L ANG+EH AHDA +DV
Sbjct: 126 WQKGNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLENLTKANGVEHTQAHDAMSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +++ +P+LF+Y + RNK ++ IDI M PLVHVSGMFG RSN +LIA
Sbjct: 186 YATIAMAKRVKKAQPRLFDYFFQLRNKQKVSNQIDIPQMKPLVHVSGMFGTLRSNISLIA 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
P+AWHP +++VI C+L+GD+ +L + +L +RL+T +EL+ G PVPIK +H+NKC
Sbjct: 246 PLAWHPTNRNAVIMCDLAGDISPLLELSADELRERLYTRRNELQPGQAPVPIKLMHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQ 359
PI+ P + + E ER G++ +C +NL +LR +R++ ++++P S +VD++
Sbjct: 306 PIIAPENTLRTEDAERVGLNRDQCAKNLAILRSNPQIREKVVELFSQPEEFPESDNVDTK 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GFF+D D+ M+ I TAP+ L L+L F D R+ L FRYRARN+P TL+ E+Q
Sbjct: 366 LYSGFFSDADKTAMEIIRETAPKNLPALDLTFQDPRIKTLLFRYRARNYPATLNYDEQQR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
WL HR+++LT+ I +Y ++ L EY+ DE K + AL +Y
Sbjct: 426 WLYHRREILTQENISQYLAAIEQLFVEYQSDEEKCRQLKALVDY 469
>gi|331642634|ref|ZP_08343769.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H736]
gi|331039432|gb|EGI11652.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H736]
Length = 491
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|330911851|gb|EGH40361.1| exodeoxyribonuclease 1 [Escherichia coli AA86]
Length = 475
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|187733588|ref|YP_001879865.1| exonuclease I [Shigella boydii CDC 3083-94]
gi|187430580|gb|ACD09854.1| exodeoxyribonuclease I [Shigella boydii CDC 3083-94]
gi|332343794|gb|AEE57128.1| exodeoxyribonuclease [Escherichia coli UMNK88]
Length = 475
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|301648514|ref|ZP_07248238.1| exonuclease [Escherichia coli MS 146-1]
gi|301073417|gb|EFK88223.1| exonuclease [Escherichia coli MS 146-1]
Length = 491
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IALAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTVKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|293410372|ref|ZP_06653948.1| sbcB [Escherichia coli B354]
gi|291470840|gb|EFF13324.1| sbcB [Escherichia coli B354]
Length = 475
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 ISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|82777457|ref|YP_403806.1| exonuclease I [Shigella dysenteriae Sd197]
gi|81241605|gb|ABB62315.1| exonuclease I [Shigella dysenteriae Sd197]
Length = 475
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA Y P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|307138678|ref|ZP_07498034.1| exonuclease I [Escherichia coli H736]
Length = 475
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|227357738|ref|ZP_03842087.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
gi|227162067|gb|EEI47081.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
Length = 476
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/469 (53%), Positives = 327/469 (69%), Gaps = 4/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F IYDYETFG A+DRPAQFAGVR D + IE V +CKP DDYLP PEAV IT
Sbjct: 7 TPTFYIYDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL++GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S
Sbjct: 67 GITPQIALKNGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP DDG SF+L+ L ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +++ +P++F+Y ++ R+K +++ LIDI MTPLVHVSGMFGA+RSN +L+A
Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
P+AWHP +++VI C+L+ D+ L S QL +RL+T EL PVPIK +H+NKC
Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDS 358
PI+ P + + + +R G+D CL N +L +R++ I+ + P+T + DVD+
Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPAD-DVDA 365
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY+GFF+D DR M+ I T P+ L LNL F D R+ LFFRYRARNFP TL+ E+Q
Sbjct: 366 QLYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQ 425
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
WL HRK+ LT ++ EY N +Q L+ E+ +E K + LY Y Q +
Sbjct: 426 RWLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEI 474
>gi|260868731|ref|YP_003235133.1| exonuclease I [Escherichia coli O111:H- str. 11128]
gi|257765087|dbj|BAI36582.1| exonuclease I [Escherichia coli O111:H- str. 11128]
gi|323177088|gb|EFZ62678.1| exodeoxyribonuclease I [Escherichia coli 1180]
Length = 474
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|323972839|gb|EGB68038.1| exonuclease [Escherichia coli TA007]
Length = 474
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|12084680|pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
Is Achieved
gi|166007143|pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom
Resolution
gi|193885301|pdb|3C94|A Chain A, ExoiSSB-Ct Complex
gi|193885304|pdb|3C95|A Chain A, Exonuclease I (Apo)
gi|284055587|pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With
Inhibitor Bcbp
gi|284055600|pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH
Inhibitor Cfam
Length = 482
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/466 (52%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIV 475
>gi|193062859|ref|ZP_03043952.1| exodeoxyribonuclease I [Escherichia coli E22]
gi|194428755|ref|ZP_03061291.1| exodeoxyribonuclease I [Escherichia coli B171]
gi|260844621|ref|YP_003222399.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
gi|192931502|gb|EDV84103.1| exodeoxyribonuclease I [Escherichia coli E22]
gi|194413202|gb|EDX29488.1| exodeoxyribonuclease I [Escherichia coli B171]
gi|257759768|dbj|BAI31265.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
gi|323161928|gb|EFZ47802.1| exodeoxyribonuclease I [Escherichia coli E128010]
Length = 475
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|315296392|gb|EFU55692.1| exonuclease [Escherichia coli MS 16-3]
Length = 474
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|170019660|ref|YP_001724614.1| exonuclease I [Escherichia coli ATCC 8739]
gi|194436340|ref|ZP_03068442.1| exodeoxyribonuclease I [Escherichia coli 101-1]
gi|169754588|gb|ACA77287.1| Exodeoxyribonuclease I [Escherichia coli ATCC 8739]
gi|194425068|gb|EDX41053.1| exodeoxyribonuclease I [Escherichia coli 101-1]
Length = 475
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|74312553|ref|YP_310972.1| exonuclease I [Shigella sonnei Ss046]
gi|73856030|gb|AAZ88737.1| deoxyribophosphodiesterase [Shigella sonnei Ss046]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|323168854|gb|EFZ54534.1| exodeoxyribonuclease I [Shigella sonnei 53G]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|157161503|ref|YP_001458821.1| exonuclease I [Escherichia coli HS]
gi|157067183|gb|ABV06438.1| exodeoxyribonuclease I [Escherichia coli HS]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|157267360|ref|NP_288516.2| exonuclease I [Escherichia coli O157:H7 str. EDL933]
gi|169822936|gb|AAG57070.2|AE005426_12 exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
[Escherichia coli O157:H7 str. EDL933]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYAXDKEKVALLKALWQYAEXJV 475
>gi|37526737|ref|NP_930081.1| exonuclease I [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36786169|emb|CAE15221.1| exodeoxyribonuclease I (exonuclease I) (DNA
deoxyribophosphodiesterase) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 476
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/462 (53%), Positives = 328/462 (70%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQHPALDRPAQFAGVRTDMDFNIIEEPLVIYCSPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF+R+IH FSVPN+CI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQIALEKGVNEAEFARQIHNAFSVPNSCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQK 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI WP ++G SFKL+ L ANG+EH +AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVLRACYALRPEGIIWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++E +P++F Y + RNK ++ LIDI M PLVHVSGMFGA+RSN +L+AP+A
Sbjct: 190 IAMAKLLKEVQPRMFNYFFQLRNKQKINALIDIPQMKPLVHVSGMFGAARSNLSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD+ +LD+ L +RL+T HDEL+ PVPIK VH+NKCPI+
Sbjct: 250 WHPANQNAVIVCDLAGDISPLLELDADALRERLYTRHDELQPDQPPVPIKLVHINKCPIV 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P + + E ER G+D C NL +L+ +R++ ++ +P+ S+ +VD++LY
Sbjct: 310 APDNTLRTEDAERIGLDRDYCGRNLAILQNNPQIREKVVELFAEAEPFPESN-NVDTKLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ M+ I T P+ L L+L F D R+ L FRYRARN+P TL+ E+Q WL
Sbjct: 369 DGFFSSADKAAMNIIRETLPQNLPALDLTFQDSRIKTLLFRYRARNYPTTLTYDEQQHWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
HR+++ T+ ++ EY ++ L EY+G+E K + AL EY
Sbjct: 429 RHRQEIFTQDKLSEYFFIIEQLFTEYQGNEEKCRQLKALMEY 470
>gi|320641419|gb|EFX10863.1| exonuclease I [Escherichia coli O157:H7 str. G5101]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|193071491|ref|ZP_03052403.1| exodeoxyribonuclease I [Escherichia coli E110019]
gi|192955213|gb|EDV85704.1| exodeoxyribonuclease I [Escherichia coli E110019]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|320175604|gb|EFW50697.1| Exodeoxyribonuclease I [Shigella dysenteriae CDC 74-1112]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|15832067|ref|NP_310840.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
gi|168764097|ref|ZP_02789104.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
gi|217329517|ref|ZP_03445596.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
gi|291283248|ref|YP_003500066.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
gi|13362281|dbj|BAB36236.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
gi|189365832|gb|EDU84248.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
gi|217317285|gb|EEC25714.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
gi|226237418|dbj|BAH46940.1| exonuclease I [Escherichia coli O55:H7]
gi|290763121|gb|ADD57082.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
gi|320646788|gb|EFX15665.1| exonuclease I [Escherichia coli O157:H- str. 493-89]
gi|320652067|gb|EFX20410.1| exonuclease I [Escherichia coli O157:H- str. H 2687]
gi|320657429|gb|EFX25227.1| exonuclease I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663245|gb|EFX30550.1| exonuclease I [Escherichia coli O55:H7 str. USDA 5905]
gi|320668145|gb|EFX35014.1| exonuclease I [Escherichia coli O157:H7 str. LSU-61]
gi|326338368|gb|EGD62196.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1044]
gi|326347111|gb|EGD70844.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1125]
Length = 475
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|82543387|ref|YP_407334.1| exonuclease I [Shigella boydii Sb227]
gi|81244798|gb|ABB65506.1| deoxyribophosphodiesterase [Shigella boydii Sb227]
gi|320185776|gb|EFW60530.1| Exodeoxyribonuclease I [Shigella flexneri CDC 796-83]
gi|332097090|gb|EGJ02073.1| exodeoxyribonuclease I [Shigella boydii 3594-74]
Length = 474
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMPPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T + +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|253989171|ref|YP_003040527.1| exonuclease I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253780621|emb|CAQ83783.1| exodeoxyribonuclease i (exonuclease i) (dn
deoxyribophosphodiesterase) [Photorhabdus asymbiotica]
Length = 476
Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/462 (53%), Positives = 326/462 (70%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGKHPALDRPAQFAGVRTDMDFNIIEDPLVIYCSPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL G+ EAEF+R+IH FSVPN CI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQVALEKGINEAEFARKIHNVFSVPNCCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQK 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI WP DDG SFKL+ L ANG+EH +AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHSHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P++F+Y + RNK ++ LIDI M PLVHVSGMFGA+RSNT+L+AP+A
Sbjct: 190 IAMAKLLKKAQPRMFDYFFQLRNKQKISNLIDIPQMKPLVHVSGMFGAARSNTSLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD+ +LD+ L +RL+T HDE L P P+K VH+NKCPI+
Sbjct: 250 WHPINRNAVIMCDLAGDISPLLELDADALRERLYTRHDELLPDQPPAPVKLVHINKCPII 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLY 361
P + + E ER G+D C +NL +LR +R++ ++ + P+ S +VD++LY
Sbjct: 310 APDNTLRAEDAERLGLDRDHCEKNLAILRNNPQIREKVVELFAQAEPFPESD-NVDAKLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D D+ M+ I T P+ L L+L F D R+ L FRYRARN+P TL+ E+Q WL
Sbjct: 369 DGFFSDADKTAMNIIRETLPQNLPALDLTFQDPRIKTLLFRYRARNYPSTLTYDEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
HR+ +LT+ ++ EY ++ L E++ +E K + L EY
Sbjct: 429 RHRQDVLTQDKLSEYIFIIEQLFIEHQSNEEKCRQLKTLMEY 470
>gi|89330230|emb|CAJ84172.1| exodeoxyribonuclease I [Escherichia coli K-12]
Length = 475
Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHD ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDVMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|188495966|ref|ZP_03003236.1| exodeoxyribonuclease I [Escherichia coli 53638]
gi|188491165|gb|EDU66268.1| exodeoxyribonuclease I [Escherichia coli 53638]
Length = 475
Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|300956271|ref|ZP_07168577.1| exonuclease [Escherichia coli MS 175-1]
gi|300316894|gb|EFJ66678.1| exonuclease [Escherichia coli MS 175-1]
Length = 491
Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|168751661|ref|ZP_02776683.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
gi|168757555|ref|ZP_02782562.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
gi|168769762|ref|ZP_02794769.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
gi|168775542|ref|ZP_02800549.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
gi|168782293|ref|ZP_02807300.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
gi|168788678|ref|ZP_02813685.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
gi|168799108|ref|ZP_02824115.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
gi|195939352|ref|ZP_03084734.1| exonuclease I [Escherichia coli O157:H7 str. EC4024]
gi|208807658|ref|ZP_03249995.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
gi|208817101|ref|ZP_03258193.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
gi|208818353|ref|ZP_03258673.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
gi|209398513|ref|YP_002271254.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
gi|254793793|ref|YP_003078630.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
gi|261225144|ref|ZP_05939425.1| exonuclease I [Escherichia coli O157:H7 str. FRIK2000]
gi|261257512|ref|ZP_05950045.1| exonuclease I [Escherichia coli O157:H7 str. FRIK966]
gi|187768997|gb|EDU32841.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
gi|188014326|gb|EDU52448.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
gi|189000162|gb|EDU69148.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
gi|189355495|gb|EDU73914.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
gi|189361232|gb|EDU79651.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
gi|189371612|gb|EDU90028.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
gi|189378492|gb|EDU96908.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
gi|208727459|gb|EDZ77060.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
gi|208730720|gb|EDZ79410.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
gi|208738476|gb|EDZ86158.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
gi|209159913|gb|ACI37346.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
gi|254593193|gb|ACT72554.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
gi|320191824|gb|EFW66472.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC1212]
Length = 474
Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|283785833|ref|YP_003365698.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
gi|282949287|emb|CBG88898.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
Length = 474
Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + + EVF+CKPADDYLP P AV +TGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAALRTDGDFNVVGEPEVFYCKPADDYLPQPGAVLVTGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW +
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAQLVKSRQPRLFDYLYTHRNKDKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISSLLELDSDTLRERLYTAKADLGDNAAIPLKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR +RD+ AI+ +P+ S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKAVAIFAEAEPFIPSD-NVDTQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TL E E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPQNLPALDITFVDKRIEKLLFNYRARNFPGTLDEAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L EY ++ K+ L+ +L++Y + ++
Sbjct: 429 HRRQVFTPEFLQSYADELQRLYQEYGDNKEKQALLKSLWQYAEEIV 474
>gi|162138417|ref|YP_541284.2| exonuclease I [Escherichia coli UTI89]
gi|307626441|gb|ADN70745.1| exonuclease I [Escherichia coli UM146]
Length = 475
Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVS MFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|218690073|ref|YP_002398285.1| exonuclease I [Escherichia coli ED1a]
gi|218427637|emb|CAR08548.2| exonuclease I [Escherichia coli ED1a]
Length = 475
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|300903879|ref|ZP_07121780.1| exonuclease [Escherichia coli MS 84-1]
gi|301307139|ref|ZP_07213168.1| exonuclease [Escherichia coli MS 124-1]
gi|300404137|gb|EFJ87675.1| exonuclease [Escherichia coli MS 84-1]
gi|300837654|gb|EFK65414.1| exonuclease [Escherichia coli MS 124-1]
gi|315253362|gb|EFU33330.1| exonuclease [Escherichia coli MS 85-1]
Length = 499
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 328/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 35 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 94
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 95 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 154
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 155 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 214
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 215 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 274
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 275 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 334
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R+ AI+ +P+T S +VD+QLY
Sbjct: 335 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSD-NVDAQLYS 393
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 394 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 453
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 454 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|91072872|gb|ABE07753.1| exodeoxyribonuclease I [Escherichia coli UTI89]
Length = 491
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVS MFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S++VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT-PSENVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|312973748|ref|ZP_07787920.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
gi|310332343|gb|EFP99578.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
Length = 475
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGM GA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|260855993|ref|YP_003229884.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
gi|257754642|dbj|BAI26144.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
gi|323152400|gb|EFZ38688.1| exodeoxyribonuclease I [Escherichia coli EPECa14]
Length = 475
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|157155858|ref|YP_001463362.1| exonuclease I [Escherichia coli E24377A]
gi|157077888|gb|ABV17596.1| exodeoxyribonuclease I [Escherichia coli E24377A]
Length = 475
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|323172599|gb|EFZ58233.1| exodeoxyribonuclease I [Escherichia coli LT-68]
Length = 475
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+ S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFMPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|309702335|emb|CBJ01657.1| exodeoxyribonuclease I [Escherichia coli ETEC H10407]
Length = 475
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/466 (52%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ +P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTHQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRGRLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEDIV 475
>gi|218705553|ref|YP_002413072.1| exonuclease I [Escherichia coli UMN026]
gi|293405493|ref|ZP_06649485.1| sbcB [Escherichia coli FVEC1412]
gi|298381181|ref|ZP_06990780.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
gi|218432650|emb|CAR13545.1| exonuclease I [Escherichia coli UMN026]
gi|291427701|gb|EFF00728.1| sbcB [Escherichia coli FVEC1412]
gi|298278623|gb|EFI20137.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
Length = 475
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 ISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 475
>gi|300947322|ref|ZP_07161523.1| exonuclease [Escherichia coli MS 116-1]
gi|300453074|gb|EFK16694.1| exonuclease [Escherichia coli MS 116-1]
Length = 475
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 328/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E R GI+ + CL+NL +LR+ +R+ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDANRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|331677916|ref|ZP_08378591.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H591]
gi|331074376|gb|EGI45696.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H591]
Length = 491
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVH+SGMFGA R NT+ +AP+A
Sbjct: 207 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTNLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T + +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 491
>gi|284922012|emb|CBG35090.1| exodeoxyribonuclease I [Escherichia coli 042]
Length = 491
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 27 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGKPEVFYCKPADDYLPQPGAVLITGIT 86
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 87 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 147 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 206
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 207 ISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 266
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 267 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 326
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 327 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 385
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 386 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 445
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 446 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 491
>gi|300723649|ref|YP_003712954.1| exonuclease I [Xenorhabdus nematophila ATCC 19061]
gi|297630171|emb|CBJ90808.1| exonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase
[Xenorhabdus nematophila ATCC 19061]
Length = 476
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/461 (54%), Positives = 320/461 (69%), Gaps = 2/461 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLPDPEAV ITGIT
Sbjct: 10 FYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL GV E EF+R+IH+ S PNTCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 70 PQQALTKGVNEVEFARQIHEVLSKPNTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQK 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI WP DDG SFKL+ L ANGIEH +AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGIEHTHAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+++ +P+LF+Y + RNK ++ IDI M PLVHVSGMFGA RSN +LIAP+A
Sbjct: 190 IAMAKLVKKAQPRLFDYFFQLRNKQKIINQIDIPQMKPLVHVSGMFGALRSNISLIAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD+ + + +L KRL+T DEL+ PVPIK VH+NKCPI+
Sbjct: 250 WHPTNRNAVIMCDLAGDISPLLEPNVDELRKRLYTRRDELQPNQSPVPIKLVHINKCPII 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P + + E ER +D +C NL +LR +R+R +++ P S +VD++LY
Sbjct: 310 APENTLRPEDAERVELDRNQCEYNLAILRNHPQIRERVVELFSSPEEFPESDNVDAKLYS 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF D D+ M+ I +TAP+ L L+L F D R+ L FRYRARN+P TL E+Q WL
Sbjct: 370 GFFGDADKTAMEIIRKTAPQNLPALDLTFQDERIKALLFRYRARNYPATLDYDEQQRWLR 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
HR+ +LT+ I +Y +++L EY+ DE K + L EY
Sbjct: 430 HRQDILTQESISQYLATIEALFVEYQSDEEKCRQLKTLVEY 470
>gi|300816639|ref|ZP_07096860.1| exonuclease [Escherichia coli MS 107-1]
gi|300530869|gb|EFK51931.1| exonuclease [Escherichia coli MS 107-1]
Length = 475
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|293415305|ref|ZP_06657948.1| exodeoxyribonuclease I [Escherichia coli B185]
gi|291432953|gb|EFF05932.1| exodeoxyribonuclease I [Escherichia coli B185]
Length = 475
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/466 (51%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDR AQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRSAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|197284734|ref|YP_002150606.1| exonuclease I [Proteus mirabilis HI4320]
gi|194682221|emb|CAR41929.1| exodeoxyribonuclease I [Proteus mirabilis HI4320]
Length = 476
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/469 (53%), Positives = 326/469 (69%), Gaps = 4/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F I+DYETFG A+DRPAQFAGVR D + IE V +CKP DDYLP PEAV IT
Sbjct: 7 TPTFYIHDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL+ GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S
Sbjct: 67 GITPQIALKHGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP DDG SF+L+ L ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +++ +P++F+Y ++ R+K +++ LIDI MTPLVHVSGMFGA+RSN +L+A
Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKC 300
P+AWHP +++VI C+L+ D+ L S QL +RL+T EL PVPIK +H+NKC
Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDS 358
PI+ P + + + +R G+D CL N +L +R++ I+ + P+T + DVD+
Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPAD-DVDA 365
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY+GFF+D DR M+ I T P+ L LNL F D R+ LFFRYRARNFP TL+ E+Q
Sbjct: 366 QLYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQ 425
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
WL HRK+ LT ++ EY N +Q L+ E+ +E K + LY Y Q +
Sbjct: 426 RWLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEI 474
>gi|218554573|ref|YP_002387486.1| exonuclease I [Escherichia coli IAI1]
gi|218361341|emb|CAQ98929.1| exonuclease I [Escherichia coli IAI1]
Length = 475
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/466 (51%), Positives = 330/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKP DDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++++I +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 430 HRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|331663511|ref|ZP_08364421.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA143]
gi|331059310|gb|EGI31287.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA143]
Length = 474
Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 329/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 190 ISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L P+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAFPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 474
>gi|89330232|emb|CAJ84173.1| exodeoxyribonuclease I [Escherichia coli K-12]
Length = 467
Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/458 (53%), Positives = 324/458 (70%), Gaps = 3/458 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL
Sbjct: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467
>gi|333003504|gb|EGK23045.1| exodeoxyribonuclease I [Shigella flexneri K-272]
gi|333017330|gb|EGK36648.1| exodeoxyribonuclease I [Shigella flexneri K-227]
Length = 474
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 327/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPRAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|24113393|ref|NP_707903.1| exonuclease I [Shigella flexneri 2a str. 301]
gi|30063460|ref|NP_837631.1| exonuclease I [Shigella flexneri 2a str. 2457T]
gi|24052413|gb|AAN43610.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
[Shigella flexneri 2a str. 301]
gi|30041713|gb|AAP17440.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
[Shigella flexneri 2a str. 2457T]
gi|281601461|gb|ADA74445.1| deoxyribophosphodiesterase [Shigella flexneri 2002017]
gi|313649951|gb|EFS14371.1| exodeoxyribonuclease I [Shigella flexneri 2a str. 2457T]
gi|332756645|gb|EGJ86994.1| exodeoxyribonuclease I [Shigella flexneri K-671]
gi|332756922|gb|EGJ87267.1| exodeoxyribonuclease I [Shigella flexneri 2747-71]
gi|332766358|gb|EGJ96567.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 2930-71]
gi|333002384|gb|EGK21946.1| exodeoxyribonuclease I [Shigella flexneri K-218]
gi|333017067|gb|EGK36388.1| exodeoxyribonuclease I [Shigella flexneri K-304]
Length = 474
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/466 (51%), Positives = 327/466 (70%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|183599505|ref|ZP_02960998.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
gi|188021751|gb|EDU59791.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
Length = 475
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/461 (53%), Positives = 318/461 (68%), Gaps = 3/461 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + I+ EVF+C P DDYLP PEAV ITGIT
Sbjct: 10 FFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPTDDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EAEF++RIHQ FS PNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 70 PQLALAQGVNEAEFAKRIHQQFSQPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQQ 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD +RA +A P+GI WP D+G S +L+ L ANGI H NAHDA +DV AT
Sbjct: 130 GNSRWDLLDTVRACFALRPEGIIWPENDEGLPSMRLEHLTKANGIAHENAHDAMSDVLAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L++ +P++F Y Y RNKN++ +LIDI +MTPLVHVSGMFGA RS +L+AP+A
Sbjct: 190 INMAKLLKAAQPRMFNYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYISLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI C+L+ D+ +L L +RL+T EL G +PVPIK VH+NKCPIL
Sbjct: 250 WHPDNRNAVIMCDLAADISPLVNLPVETLRERLYTPKTELDGELPVPIKLVHINKCPILA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P + E ER G+D CL NL +LR+ ++R + I+ +P+ + DVD+Q+Y
Sbjct: 310 PEKTLRIEDAERTGVDRDLCLRNLEILRKHPDIRHKVIEIFAQAQPFEEPN-DVDAQIYS 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR MD I T + L L+L F D R+ ELFFRY+ARN+P TLS E+Q WL+
Sbjct: 369 GFFSSSDRSTMDIIRETPEKNLPALDLTFEDPRMKELFFRYKARNYPSTLSYDEQQRWLQ 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
HR+ T SR+ EY ++SL E++ D + + AL Y
Sbjct: 429 HRRDYFTESRLMEYMQSIESLMIEHQNDVERCKQLKALVNY 469
>gi|333002524|gb|EGK22085.1| exodeoxyribonuclease I [Shigella flexneri VA-6]
Length = 474
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/466 (51%), Positives = 326/466 (69%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 WHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W E
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWQE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|110805983|ref|YP_689503.1| exonuclease I [Shigella flexneri 5 str. 8401]
gi|110615531|gb|ABF04198.1| Exodeoxyribonuclease I [Shigella flexneri 5 str. 8401]
Length = 474
Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/466 (51%), Positives = 326/466 (69%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP+A
Sbjct: 190 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LD L + L+T+ +L VP+K VH++KCP+L
Sbjct: 250 WHPENRNAVIMADLAGDISPLLELDIDTLRELLYTAKADLGDNAAVPVKLVHIDKCPVLA 309
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+
Sbjct: 310 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 369 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 HRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|147788|gb|AAA19938.1| exonuclease I [Escherichia coli]
Length = 466
Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/463 (51%), Positives = 321/463 (69%), Gaps = 12/463 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YL+ LID+ +M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 191 IAMAKLVKTRQPRLFDYLF---------ALIDVPHMKPLVHVSGMFGAWRGNTSWVAPLA 241
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 242 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 301
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
+ + E +R GI+ + CL+NL +LR+ R++ AI+ +P+T S +VD+QLY+
Sbjct: 302 QANTLRPEDADRLGINRQHCLDNLKILRENPQEREKVVAIFAEAEPFTPSD-NVDAQLYN 360
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE
Sbjct: 361 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 420
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
HR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y +
Sbjct: 421 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAE 463
>gi|238898974|ref|YP_002924656.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466734|gb|ACQ68508.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 490
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/462 (52%), Positives = 322/462 (69%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYETFG+ LDRPAQFAG+R D ++ +E V +C PA DYLPDPEAV ITGIT
Sbjct: 7 FYIYDYETFGQHPGLDRPAQFAGIRTDLEFHPVEDPLVLYCSPAQDYLPDPEAVMITGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKAL +GV EA F+ +IH+ S PNTCI+GYNNIRFDD +SR+IFYRNFYD Y +SW N
Sbjct: 67 PQKALSEGVNEARFAHQIHRVLSQPNTCILGYNNIRFDDEFSRHIFYRNFYDPYAYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD+ RA YA P+GI WP + G SFKL+ L AN I+H AHDA +DVYAT
Sbjct: 127 GNSRWDLLDLTRACYALRPEGIIWPKNEQGLPSFKLEHLTKANSIKHTQAHDALSDVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL L++ +P+LF Y Y +R+K+++ LI I +M PLVHVSGMF + +T+ I P+A
Sbjct: 187 MALAKLLKSAQPRLFHYFYAHRSKHKINTLIHIGDMAPLVHVSGMFSPEKGHTSWILPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPIL 303
WHP +++VI C+L+GD+ L + L +RL+T D+L VP+K VH+NKCPIL
Sbjct: 247 WHPDNQNAVIVCDLAGDITPLLSLKADMLRERLYTPRDQLGSECAQVPLKLVHINKCPIL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQLY 361
P +E+ +R GID + CL+NL LLR+ ++R++ AI++ KP+ + +VD+QLY
Sbjct: 307 APAKTLSRENAQRLGIDQQHCLKNLELLRRYPDIREKMVAIFDGQKPFPKVN-NVDAQLY 365
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF D DR + I +T PE L TL + F D RL LFFR+RARN+P TLSEK++Q W
Sbjct: 366 DGFFNDFDRAEISTIQKTLPENLPTLKIVFQDPRLETLFFRFRARNYPETLSEKDQQRWK 425
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
H +L+ I+EY KL+ + EY+ + K+ LI+ L +Y
Sbjct: 426 AHFNTVLSPGIIKEYLLKLKEMLLEYEDNPEKQTLIHLLIQY 467
>gi|304413420|ref|ZP_07394893.1| exonuclease I [Candidatus Regiella insecticola LSR1]
gi|304284263|gb|EFL92656.1| exonuclease I [Candidatus Regiella insecticola LSR1]
Length = 475
Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/463 (51%), Positives = 327/463 (70%), Gaps = 5/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++DYETFG++ ALDRP QFAGVR D + I+ V +C PA+DYLP PEAV ITGIT
Sbjct: 10 FYVHDYETFGQNPALDRPVQFAGVRTDDDFNIIDDPLVIYCAPANDYLPQPEAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL+ GV EAEF ++IHQ FSV TC +GYNNIRFDD SRNIFYRNFYD Y ++W N
Sbjct: 70 PQYALKHGVNEAEFCQKIHQQFSVAGTCTLGYNNIRFDDEVSRNIFYRNFYDPYAYNWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI WP DG SFKL+ LA ANGI+H+ AHDA +DVYAT
Sbjct: 130 GNSRWDLLDVVRACYALRPEGINWPKNADGLPSFKLEHLAKANGIQHLKAHDAMSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L L+++ +P+LF+Y Y +R+K++++ LIDI+NMTPLVHVSGMFG RSN +L+AP+A
Sbjct: 190 IELAKLVKQAQPRLFKYFYHHRSKHKIKALIDIENMTPLVHVSGMFGVRRSNISLVAPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP K++VI C+L+ D+ LD L + L+T D L + +P+K VH+NKCPIL
Sbjct: 250 WHPENKNAVIVCDLAADISPL-SLDVNTLREHLYTPKDPLNPQQITIPLKLVHINKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ--DVDSQLY 361
P++ +++ +R ID + CL L LRQ ++++ A++ K T+ + +VD+QLY
Sbjct: 309 APVNTWREKETKRLKIDLQYCLNQLESLRQNPQIKEKVNALF-KQMTARPKVNNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF D D + +I +T+P+ L LN F D RL L FR+RARN+ +TL + E++ L
Sbjct: 368 CGFFNDTDHNTIKKIQQTSPQNLPALNFCFQDPRLETLLFRFRARNYHNTLDDTEQRRLL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
E+RK++L+ +I+EY +L L +Y+ +E K L+ +L +Y+
Sbjct: 428 EYRKEVLSPEKIKEYILQLNQLCYQYQNNEEKSSLLKSLLDYV 470
>gi|149912138|ref|ZP_01900724.1| putative exonuclease I [Moritella sp. PE36]
gi|149804786|gb|EDM64828.1| putative exonuclease I [Moritella sp. PE36]
Length = 480
Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/466 (51%), Positives = 316/466 (67%), Gaps = 4/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG +LDRP+QFAG+R D + I ++F+C+ +DDYLP PEA ITGIT
Sbjct: 15 FYWHDYETFGLSPSLDRPSQFAGIRTDMDFNVIGEPDMFYCRQSDDYLPSPEATLITGIT 74
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQK +GV EAEFS+RI FS NTCIIGYNNIRFDD +RNIFYRNFYD Y +W +
Sbjct: 75 PQKTQAEGVNEAEFSKRIEAQFSHKNTCIIGYNNIRFDDEVTRNIFYRNFYDPYAHTWKD 134
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD++D+MRA YA P+GI WP DDG S +L+ L ANGIEH NAHDA +DVYAT
Sbjct: 135 GNSRWDIIDLMRACYALRPEGIVWPENDDGLPSMRLELLTKANGIEHANAHDATSDVYAT 194
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++EK+PKLF++L++ R+K ++ LIDI NMTPLVHVSGMFGA R T+ + P+A
Sbjct: 195 IAMAKLVKEKQPKLFDFLFNLRSKRKVESLIDIINMTPLVHVSGMFGADRGFTSWVVPLA 254
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D+ +L + +L +RL+T +L L P+P+K +H+NKCP+L
Sbjct: 255 WHPTNNNAVIVADLAQDITPLLELSADELRERLYTPKKDLGDLAPIPLKLIHINKCPVLA 314
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362
P E+ ER GID CL NL L++ LR+ +Y ++ Y S+ +VD+ +YD
Sbjct: 315 PAKTLLPENAERLGIDRNACLANLKRLKESATLRENVVGVYQVDREYPKSN-NVDAMIYD 373
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ + + TAPEQL L L SD R ELFFRYRARNFPH LS E+Q WL
Sbjct: 374 GFFSAGDKANFEILRETAPEQLVGLQLKISDERFNELFFRYRARNFPHLLSMPEQQKWLN 433
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + +L S Y ++L +L+ E DE K L+ LY Y Q +I
Sbjct: 434 HCRSVLEDS-APAYFDRLDALAIENSHDERKMKLLQQLYLYGQTII 478
>gi|262275634|ref|ZP_06053443.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
gi|262219442|gb|EEY70758.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
Length = 474
Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/466 (49%), Positives = 313/466 (67%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG ALDRP QFAGVR D+ + I V +C+P +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETFGTSPALDRPCQFAGVRTDKDFNIIGEPLVIYCQPPNDYLPQPEACLITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A++ G+ E EF +IH+ S+P TC +GYNNIRFDD +R YRNF+D Y W W N
Sbjct: 69 PQTAVKRGLPEPEFIAKIHEQLSMPGTCAVGYNNIRFDDEVTRYTLYRNFFDPYGWIWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA PDGI+WP D+G SFKL+ L++ANGIEH NAHDA ADV+AT
Sbjct: 129 GNSRWDLLDVMRAAYALRPDGIEWPVNDEGNISFKLEHLSVANGIEHSNAHDAMADVHAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +P+LF+YLY +RNKN+L LID+ +M PLVHVSGMFG R NT+ I PVA
Sbjct: 189 IEMAKKLKAAQPRLFDYLYTHRNKNKLTALIDVVSMKPLVHVSGMFGVERGNTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP K++VI +L D DLD+ L +RL+T H +L +PVP+K +H+NKCP+L
Sbjct: 249 WHPDNKNAVIAIDLGRDPSPLFDLDADALRERLYTKHADLAPDELPVPVKLIHINKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYD 362
+ E R GID ++CLENL L+ +R++ +Y KP +SS +VD+ LYD
Sbjct: 309 ADAKTLRPEDAARLGIDRQQCLENLKKLQAHPEIREKLVTLYAEKPEYASSGNVDAALYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR MD I +T PE L+ L++ SD R+ L FRYRARNFP TL++ E++ W
Sbjct: 369 GFFSPADRSTMDIIRQTKPENLAALDIQVSDPRIKPLLFRYRARNFPWTLTDSEQKQWHM 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + + Y L++L+ + DE K ++ ++Y Y++ ++
Sbjct: 429 HRRDYF-EAELPAYMANLEALAEANQNDEKKFAILKSVYHYIESLV 473
>gi|90578663|ref|ZP_01234473.1| putative exonuclease I [Vibrio angustum S14]
gi|90439496|gb|EAS64677.1| putative exonuclease I [Vibrio angustum S14]
Length = 473
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/462 (49%), Positives = 312/462 (67%), Gaps = 3/462 (0%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGITPQ+A
Sbjct: 13 DYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGITPQEA 72
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W NGNSR
Sbjct: 73 MEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQNGNSR 132
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WDLLD+MR YA P+G+ WP D+ SFKL+ L++ANGIEH NAHDA ADVYAT+ L
Sbjct: 133 WDLLDIMRTCYALRPEGVNWPLDDEDRPSFKLEKLSIANGIEHANAHDAMADVYATIELA 192
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
+I+ +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG NT+ I PVAWHP
Sbjct: 193 KIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPVAWHPD 252
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPID 307
K++VI NL+ D +LD+ QL +RL+T +L +PVP+KEVHLNKCP+L P
Sbjct: 253 NKNAVITVNLALDPTPLIELDTDQLRERLYTKRVDLAPDELPVPVKEVHLNKCPVLAPAK 312
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDGFFA 366
K E R GID ++CL+NL L++Q +R++ +++ K +++ +VD+ LYDGFF+
Sbjct: 313 TLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMFSVKREYAANDNVDAMLYDGFFS 372
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
DR MD I TAP+QL++L + D+R+ L FRYRARNFP TLS +E+ W H +
Sbjct: 373 TADRSTMDIIRETAPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWKHHCQD 432
Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+ + +Y ++++ E++ DE K ++ +LY+Y+ ++
Sbjct: 433 FFEMN-MPKYMENFEAVAYEHESDENKMKVLQSLYDYVSKLV 473
>gi|153833726|ref|ZP_01986393.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
gi|148870005|gb|EDL68965.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
Length = 473
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/462 (49%), Positives = 313/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T DEL L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QLYDG
Sbjct: 309 PAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRAR++ TL E+E++ W +H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRWAQH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|156974404|ref|YP_001445311.1| exonuclease I [Vibrio harveyi ATCC BAA-1116]
gi|156525998|gb|ABU71084.1| hypothetical protein VIBHAR_02119 [Vibrio harveyi ATCC BAA-1116]
Length = 473
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/462 (49%), Positives = 313/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP P+A ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVVAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T DEL L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QLYDG
Sbjct: 309 PAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRAR++ TL E+E++ W +H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRWAQH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|54308882|ref|YP_129902.1| exonuclease I [Photobacterium profundum SS9]
gi|46913312|emb|CAG20100.1| putative exonuclease I [Photobacterium profundum SS9]
Length = 474
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/468 (49%), Positives = 310/468 (66%), Gaps = 7/468 (1%)
Query: 2 TNHFVIY--DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
TN +Y DYETFG A DR QFAGVR D + I V +CKP DYLP PEA
Sbjct: 4 TNEPTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGKPLVIYCKPPVDYLPSPEACL 63
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ+A G+ E EF +IH S PNTC+IGYNN+RFDD +R YRNFYD Y
Sbjct: 64 ITGITPQEAQEKGLPEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYA 123
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W W NGNSRWDLLD+MR YA P+G+ WP+ D+G SFKL+ L++ANGIEH NAHDA A
Sbjct: 124 WGWQNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMA 183
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DVYAT+ L +++ +PKLF YL+D R+K +L++LIDI N+TPLVHVSGMFG NT+
Sbjct: 184 DVYATIELAKILKTNQPKLFNYLFDLRHKRKLQELIDIVNLTPLVHVSGMFGVGCGNTSW 243
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLN 298
I P+AWHP K++VI NL+ D +LD+ Q+ +R++T ELK +P+P+K VHLN
Sbjct: 244 IVPMAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLN 303
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDV 356
KCP+L P K E +R GID +CL+NL +L++ +R++ AI+ + Y ++ DV
Sbjct: 304 KCPVLAPAKTLKAEDADRIGIDRAQCLKNLQILKEHPEVREKLVAIFAVQREYKENT-DV 362
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
DS LYDGFF+ DR +D I + PE L+ + L D+R+ L FRYRARNFP TL+ +E
Sbjct: 363 DSMLYDGFFSTSDRSSIDIIRESTPEALAEIKLNVEDKRIKPLLFRYRARNFPMTLNYEE 422
Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
+Q W H + + + Y ++++ E + +E K ++ ALY+Y+
Sbjct: 423 QQKWKHHCQDFF-QDNLPAYMENFEAVATENQSNEHKMKILKALYDYI 469
>gi|89074290|ref|ZP_01160780.1| putative exonuclease I [Photobacterium sp. SKA34]
gi|89049994|gb|EAR55528.1| putative exonuclease I [Photobacterium sp. SKA34]
Length = 473
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/462 (49%), Positives = 309/462 (66%), Gaps = 3/462 (0%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGITPQ+A
Sbjct: 13 DYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGITPQEA 72
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W NGNSR
Sbjct: 73 MEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQNGNSR 132
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WDLLD+MR YA P+GI WP D+ SFKL+ L++ANGIEH NAHDA ADVYAT+ L
Sbjct: 133 WDLLDIMRTCYALRPEGINWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYATIELA 192
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
+I+ +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG NT+ I P+AWHP
Sbjct: 193 KIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPMAWHPD 252
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPID 307
K++VI NL+ D +L++ QL RL+T +L +PVP+KEVHLNKCP+L P
Sbjct: 253 NKNTVITVNLALDPTPLIELNADQLRNRLYTKRVDLAPDELPVPVKEVHLNKCPVLAPAK 312
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF-KAIYNKPYTSSSQDVDSQLYDGFFA 366
K E R GID ++CL+NL L++Q +R++ + + K +++ +VD+ LYDGFF+
Sbjct: 313 TLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMVSVKREYAANDNVDAMLYDGFFS 372
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
DR MD I T P+QL++L + D+R+ L FRYRARNFP TLS +E+ W H +
Sbjct: 373 TADRSTMDIIRETTPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWKHHCQD 432
Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+ + +Y ++++ E++ DE K ++ +LY+Y+ ++
Sbjct: 433 FFEMN-MTKYMENFEAVAYEHESDESKMKVLQSLYDYVSKLV 473
>gi|90415078|ref|ZP_01223036.1| putative exonuclease I [Photobacterium profundum 3TCK]
gi|90323813|gb|EAS40426.1| putative exonuclease I [Photobacterium profundum 3TCK]
Length = 474
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/459 (49%), Positives = 306/459 (66%), Gaps = 5/459 (1%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
DYETFG A DR QFAGVR D + I V +CKP DYLP PEA ITGITPQ+A
Sbjct: 13 DYETFGATPATDRACQFAGVRTDMDFNIIGEPLVIYCKPPVDYLPSPEACLITGITPQEA 72
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G+ E EF +IH S PNTC+IGYNN+RFDD +R YRNFYD Y W W NGNSR
Sbjct: 73 QEKGLSEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWGWQNGNSR 132
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WDLLD+MR YA P+G+ WP+ D+G SFKL+ L++ANGIEH NAHDA ADVYAT+ L
Sbjct: 133 WDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADVYATIELA 192
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
+++ +PKLF YL+D R+K +L++L+DI N+TPLVHVSGMFG NT+ I P+AWHP
Sbjct: 193 KILKTNQPKLFNYLFDLRHKRKLQELVDIVNLTPLVHVSGMFGVGCGNTSWIVPMAWHPD 252
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPID 307
K++VI NL+ D +LD+ Q+ +R++T ELK +P+P+K VHLNKCP+L P
Sbjct: 253 NKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKCPVLAPAK 312
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYDGFF 365
K E R GID +CL+NL +L++ +R++ AI+ + Y ++ DVDS LYDGFF
Sbjct: 313 TLKAEDANRIGIDRAQCLKNLQILKEHPEIREKLVAIFAVQREYKENT-DVDSMLYDGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
++ DR +D I + PE L+ + L D+R+ L FRYRARNFP TL+ +E+Q W H +
Sbjct: 372 SNSDRSSIDIIRESTPEALAEIQLNVEDKRIKPLLFRYRARNFPLTLNYEEQQKWKHHCQ 431
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
+ + Y ++++ E + +E K ++ ALY+Y+
Sbjct: 432 DFF-QDNLPAYMENFEAVATENQSNEHKMKILKALYDYI 469
>gi|254228381|ref|ZP_04921808.1| exonuclease family [Vibrio sp. Ex25]
gi|262394467|ref|YP_003286321.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
gi|151939187|gb|EDN58018.1| exonuclease family [Vibrio sp. Ex25]
gi|262338061|gb|ACY51856.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
Length = 473
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/462 (48%), Positives = 311/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPAKDRPSQFAGVRTDENFNVIGEPLVMYCQPPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R K +L +L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDG 363
P E+ E GID ++CL NL LLRQ +R++ ++++ S DVD+QLYDG
Sbjct: 309 PAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWALH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|320156592|ref|YP_004188971.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
gi|319931904|gb|ADV86768.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
Length = 473
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/465 (49%), Positives = 311/465 (66%), Gaps = 2/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I P+A
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ LYDG
Sbjct: 309 PAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W H
Sbjct: 369 FFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRWANH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ SRIEEY L++L E++ DE K ++ ++Y Y + +I
Sbjct: 429 CREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLI 472
>gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546]
gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546]
Length = 474
Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/464 (50%), Positives = 309/464 (66%), Gaps = 5/464 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ E EF +IH+ ++PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI+WP ++G SFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACYALRPEGIEWPENEEGFISFKLESLSVANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D + DLD+ QL +RL+T H +L +PVP+K V LNKCPIL
Sbjct: 249 WHPTNQNAVICVDLAKDPQALLDLDTEQLNQRLYTKHSDLGPDELPVPVKLVQLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLY 361
P E+ E+ GID ++CLENL LLR+ +R++ +Y + Y SQDVDS LY
Sbjct: 309 APAKTLTAENAEKIGIDREKCLENLALLRKHPEIREKLIGVYAIEREY-EKSQDVDSMLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ MD I T P L+ L++ F+D R+ L FRYRARNFP TL E E+Q W
Sbjct: 368 DGFFSPADKAAMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWTLDESEQQRWA 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + SRIE+Y L++L+ E++ D+ K ++ ++Y+Y+Q
Sbjct: 428 LHCRDYF-ESRIEDYMLNLENLAHEHESDQKKMAILKSIYQYVQ 470
>gi|37679656|ref|NP_934265.1| exonuclease I [Vibrio vulnificus YJ016]
gi|37198401|dbj|BAC94236.1| exonuclease I [Vibrio vulnificus YJ016]
Length = 473
Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/465 (49%), Positives = 311/465 (66%), Gaps = 2/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I P+A
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ LYDG
Sbjct: 309 PAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W H
Sbjct: 369 FFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRWANH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ SRIEEY L++L E++ DE K ++ ++Y Y + +I
Sbjct: 429 CREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLI 472
>gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
102761]
gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
102761]
Length = 473
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/458 (49%), Positives = 304/458 (66%), Gaps = 3/458 (0%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
DYETFG A DRP QFAG+R D I V +CKP DYLP PEA ITGITPQ+A
Sbjct: 13 DYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPEACLITGITPQEA 72
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G+ E EF RIH+ S PNTC++GYNN+RFDD +R YRNFYD Y WSW GNSR
Sbjct: 73 NEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYDPYGWSWQQGNSR 132
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WDLLD+MR YA PDGI WP+ D+G SFKL+ L++ANGIEH NAHDA ADVYAT+ +
Sbjct: 133 WDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIEHSNAHDAMADVYATIEMA 192
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
L+++ +PKLF+YL++ R+KN+L++LID+ N+TPLVHV+GMFG NT+ I P+AWHP
Sbjct: 193 KLVKQNQPKLFDYLFNNRHKNKLQQLIDVVNLTPLVHVTGMFGTVCGNTSWIVPIAWHPD 252
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPILMPID 307
K++VI NL+ D +LDS + RL+T +L +P+P+KEVHLNKCPIL P
Sbjct: 253 NKNAVITINLAQDPTPLIELDSETIRTRLYTKRADLAADELPIPLKEVHLNKCPILAPAK 312
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDGFFA 366
+R ID ++CL+NL L++Q +R++ +++ K + +VD+ LYDGFF+
Sbjct: 313 TLTANDADRLDIDREQCLKNLALIKQHPEIREKVLEVFSVKREFDNHDNVDAMLYDGFFS 372
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
DR MD I TAPE+L+ L L +D+R+ L FRYRARNFP TLS +E+ W H +
Sbjct: 373 HADRVAMDIIRETAPEELANLQLEVADKRIKPLLFRYRARNFPMTLSYEEQTRWKHHCQD 432
Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
+ I Y + ++ + + DE K +++ L +Y+
Sbjct: 433 YF-EANIPRYMENFEQVALDNQSDENKMAILHKLGQYI 469
>gi|27366077|ref|NP_761605.1| exonuclease I [Vibrio vulnificus CMCP6]
gi|27362277|gb|AAO11132.1| Exodeoxyribonuclease I [Vibrio vulnificus CMCP6]
Length = 473
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/465 (49%), Positives = 310/465 (66%), Gaps = 2/465 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP+QFA VR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I P+A
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ LYDG
Sbjct: 309 PAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTMLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W H
Sbjct: 369 FFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRWANH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ SRIEEY L++L E++ DE K ++ ++Y Y + +I
Sbjct: 429 CREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLI 472
>gi|260778470|ref|ZP_05887362.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
gi|260604634|gb|EEX30929.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
Length = 474
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/467 (49%), Positives = 310/467 (66%), Gaps = 5/467 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF +IH+ S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAASKGLPEPEFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+GI WP ++G SFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGINWPENEEGFISFKLEHLSVANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ + PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWVVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D + DLD QL +RL+T H EL +PVPIK VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQLY 361
P E+ GID ++CL+NL LRQ +R++ ++Y+ + Y S DVD+ LY
Sbjct: 309 APAKTLTAENAANIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREY-EKSDDVDTMLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ +Q MD I T P+ LS L++ FSD R+ L FRYRAR+FP TL E E+Q W
Sbjct: 368 DGFFSPAAKQSMDIIRETEPKNLSALDISFSDDRIAPLLFRYRARHFPWTLDESEQQKWA 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIE+Y L++L E++ DE K ++ ++Y+Y+Q ++
Sbjct: 428 AHSREYF-ESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLV 473
>gi|330446032|ref|ZP_08309684.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490223|dbj|GAA04181.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 473
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/462 (49%), Positives = 307/462 (66%), Gaps = 3/462 (0%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGITPQ+A
Sbjct: 13 DYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGITPQEA 72
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W NGNSR
Sbjct: 73 MEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQNGNSR 132
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WDLLD+MR YA PDG+ WP D+ SFKL+ L++ANGIEH NAHDA ADVYAT+ L
Sbjct: 133 WDLLDIMRTCYALRPDGLNWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYATIELA 192
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
+++ +PKLF+YL+D R+K +L+ L+DI N+TPLVH+SGMFG NT+ I P+AWHP
Sbjct: 193 KIVKTNQPKLFDYLFDLRHKRKLQDLVDIVNLTPLVHISGMFGTDCGNTSWIVPLAWHPD 252
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPID 307
K++VI NL+ D +LD+ QL +RL+T +L +PVPIKEVHLNKCP+L P
Sbjct: 253 NKNAVITVNLALDPTPLIELDADQLRERLYTKRIDLAPDELPVPIKEVHLNKCPVLAPAK 312
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDGFFA 366
K E R GID ++CL++L L++Q +R++ +++ K ++ +VD+ LYDGFF+
Sbjct: 313 TLKAEDAARLGIDREQCLKHLALIKQHPEIREKVLEMFSVKREYDANDNVDAMLYDGFFS 372
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
DR MD I T +QL +L + D+R+ L FRYRARNFP TLS +E+ W H +
Sbjct: 373 TADRSTMDIIRETPADQLGSLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWKHHCQD 432
Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+ + +Y ++++ EY+ DE K ++ +LY+Y+ ++
Sbjct: 433 FF-EANMPKYMENFEAVAYEYESDENKMKILKSLYDYVSKLV 473
>gi|91223947|ref|ZP_01259211.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
gi|91191439|gb|EAS77704.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
Length = 473
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 309/462 (66%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAG R D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKTVQEGLSEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADVVAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R K +L L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDG 363
P E+ E GID ++CL NL LLRQ +R++ ++++ S DVD+QLYDG
Sbjct: 309 PAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWALH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|163801030|ref|ZP_02194930.1| exodeoxyribonuclease I [Vibrio sp. AND4]
gi|159175379|gb|EDP60176.1| exodeoxyribonuclease I [Vibrio sp. AND4]
Length = 473
Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/462 (48%), Positives = 311/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAMQEGLSEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T +EL L+P+P+K +HLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPLLELSAEKLQERLYTKREELGDLLPIPVKLIHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ E GID ++CL NL LLRQ +R++ +++ + S DVD+QLY+G
Sbjct: 309 PAKTLTAENAEIIGIDRQKCLNNLALLRQHPEIREKLIGLFSIEREFQKSDDVDTQLYEG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T L+ L++ F D+R+ L FRYRAR++ TL E+E++ W +H
Sbjct: 369 FFSPADRAAMDIIRETDAHNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRWEQH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ +IEEY L++L E++ DE K L+ ++Y Y++
Sbjct: 429 CREVF-EGQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVE 469
>gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
Length = 474
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/464 (49%), Positives = 306/464 (65%), Gaps = 5/464 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPHPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ E EF +IH+ + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQTAETQGLSEPEFIAKIHEQLATPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+GI+WP D+G SFKL+ L+ NGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACYALRPEGIEWPVNDEGFISFKLEHLSKENGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ + PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWVVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D + DLD QL +RL+T H EL +PVP+K +HLNKCPIL
Sbjct: 249 WHPTNQNAVICVDLAKDPQALLDLDVEQLNERLYTKHSELGPDELPVPVKLIHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQLY 361
P E+ E+ GID ++CL NL LLRQ +R++ +Y+ + Y SS DVD+ LY
Sbjct: 309 APAKTLTAENAEKIGIDREQCLNNLALLRQHPEVREKLIGLYSAEREYEKSS-DVDTMLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ MD I T P L+ L++ F+D+R+ L FRYRARNFP TL E E+Q W
Sbjct: 368 DGFFSPADKTAMDIIRETDPNNLTALDITFNDQRIDPLLFRYRARNFPWTLDESEQQRWA 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + SRIE+Y L++L E++ D+ K ++ ++Y+Y+Q
Sbjct: 428 NHCRDYF-ESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQ 470
>gi|269966310|ref|ZP_06180397.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
gi|269829049|gb|EEZ83296.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
Length = 473
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 309/462 (66%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DR +QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPAKDRSSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADVVAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R K +L L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDG 363
P E+ E GID ++CL NL LLRQ +R++ ++++ S DVD+QLYDG
Sbjct: 309 PAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWALH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|28898075|ref|NP_797680.1| exonuclease I [Vibrio parahaemolyticus RIMD 2210633]
gi|153836551|ref|ZP_01989218.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
gi|260366376|ref|ZP_05778815.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
gi|260878424|ref|ZP_05890779.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
gi|260897003|ref|ZP_05905499.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
gi|28806289|dbj|BAC59564.1| exodeoxyribonuclease I [Vibrio parahaemolyticus RIMD 2210633]
gi|149750149|gb|EDM60894.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
gi|308087707|gb|EFO37402.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
gi|308091094|gb|EFO40789.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
gi|308113162|gb|EFO50702.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
Length = 473
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 311/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+++G+ E EF +IH S P T +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ NGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QLYDG
Sbjct: 309 PAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWALH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|260901800|ref|ZP_05910195.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
gi|308108118|gb|EFO45658.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
Length = 473
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 311/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+++G+ E EF +IH S P T +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ NGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QLYDG
Sbjct: 309 PAKTLTAENAENIGIDRQKCLDNLALLRQYPEIREKLIGLFSIERQFEKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWALH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326]
gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326]
Length = 474
Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/466 (49%), Positives = 307/466 (65%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ E EF +IH+ ++PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA YA P+G++WP D+G SFKL+ L+ ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACYALRPEGVEWPENDEGFISFKLEHLSKANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + I+ +PKLF+Y R+K +L L+DI NMTPL+HVSGM G + T+ + P+A
Sbjct: 189 IEMAKKIKAAQPKLFDYFLSMRHKRKLNDLVDIVNMTPLMHVSGMLGKECNYTSWMVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D + DLD QL +RL+T H EL + +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIMVDLAKDPQPLLDLDVEQLNQRLYTKHSELAEDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYD 362
P E+ E GID +CL+NL LLRQ +R++ +Y+ + + DVD+ LYD
Sbjct: 309 APAKTLTAENAETIGIDRDQCLKNLALLRQHPEVREKLIGLYSIEREYAKDNDVDAMLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ MD I T P L+ L++ F+D R+ L FRYRARNFP +L E E+Q W
Sbjct: 369 GFFSPADKASMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWSLDESEQQRWAN 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIEEY L++L E++ DE K ++ ++Y+Y+Q ++
Sbjct: 429 HCREYF-ESRIEEYMLNLENLVHEHESDEKKLAILKSVYQYVQKLV 473
>gi|328472968|gb|EGF43816.1| exonuclease I [Vibrio parahaemolyticus 10329]
Length = 473
Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/462 (48%), Positives = 310/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+++G+ E EF +I S P T +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAMQEGLSEPEFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP +DG TSFKL+ L++ NGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYDG 363
P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QLYDG
Sbjct: 309 PAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W H
Sbjct: 369 FFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWALH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+++ S+IEEY L++L E++ DE K ++ ++Y Y++
Sbjct: 429 CREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVE 469
>gi|209695175|ref|YP_002263104.1| exonuclease I [Aliivibrio salmonicida LFI1238]
gi|208009127|emb|CAQ79365.1| exodeoxyribonuclease I [Aliivibrio salmonicida LFI1238]
Length = 474
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/466 (48%), Positives = 303/466 (65%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPEACLITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WSW N
Sbjct: 69 PQMAVSKGLSEPEFIAQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA+YA P+GI+WP ++G SF+L+ L+ ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRAVYALRPEGIEWPKDEEGKPSFRLEKLSQANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++++ +PK+F YL R+K + LIDI MTPL+HVSGMFG R N + I PVA
Sbjct: 189 IELAKVVKKAQPKMFNYLLSMRHKKKAATLIDIIEMTPLMHVSGMFGVDRGNISWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++VI +L+ D VF +LD+ QL +R++T EL +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNNNAVITIDLALDPAVFLELDAEQLHQRMYTKRSELGPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYD 362
P E+ +D + CL NL ++R+ +R + +YN +P S +VD+ LYD
Sbjct: 309 APAKTLTAENAIALNVDREACLRNLKVIRENPEIRQKLIDLYNIEPGYEKSSNVDTLLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ +D I ++ PEQL SD R+ L FRYRARNFPHTL+E E+ W
Sbjct: 369 GFFSHADKTAIDMIRQSTPEQLIDFEPNVSDPRIKPLLFRYRARNFPHTLNESEQLRWQA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + + + +Y+ + +SL E +G+E K ++ A+Y Y+Q ++
Sbjct: 429 HLQDYF-ETHMSDYETRFESLYLESEGNEKKTAILRAVYNYVQQLV 473
>gi|148975895|ref|ZP_01812684.1| exonuclease I [Vibrionales bacterium SWAT-3]
gi|145964640|gb|EDK29893.1| exonuclease I [Vibrionales bacterium SWAT-3]
Length = 474
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/463 (49%), Positives = 312/463 (67%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT IT
Sbjct: 9 YFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITRIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+ G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAVSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA++A PDGI WP ++G SFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PK+F+YLY+ R+K +L +L+DI NMTPL+HVSGMFG + T+ I P+A
Sbjct: 189 IELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNYTSWIVPMA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D +LD+ +L +RL+T +L + +PVPIK V LNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSDLNEDELPVPIKLVQLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ E GID ++CL+NL +LR+ +R++ +Y++ S DVD+QLYD
Sbjct: 309 APAKTLTAENAETIGIDRQQCLKNLAILREHPEIREKLIGLYSQEREYEKSDDVDTQLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ M+ I T P L+ L++ FSD R+ L FRYRARNFP TL E E+ W
Sbjct: 369 GFFSPADKTAMNIIRETDPNNLAVLDITFSDERIKPLLFRYRARNFPWTLDESEQLKWAN 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H ++ SR+EEY L++L+ E++ DE K ++ A+Y+Y++
Sbjct: 429 HCREFY-ESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVE 470
>gi|257464641|ref|ZP_05629012.1| exonuclease I [Actinobacillus minor 202]
gi|257450301|gb|EEV24344.1| exonuclease I [Actinobacillus minor 202]
Length = 514
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/466 (48%), Positives = 313/466 (67%), Gaps = 4/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG + A+DRPAQFAG+R D Q+ I +F+CK DYLP PEAV +TGI
Sbjct: 7 FFFYDYESFGVNPAIDRPAQFAGIRTDEQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGIL 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +G+ E EF+ RIH FS PNTC+IGYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI+W + ++G +FKL++L ANGI H NAHDA +DVYAT
Sbjct: 127 GNSRWDLLDVVRACYALRPEGIEWVTDEEGIPNFKLENLTKANGISHENAHDAMSDVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R NTA + P+A
Sbjct: 187 IAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI C+LSGD++ + S L RL+T EL + PVP+K VH+NKCPIL
Sbjct: 247 WHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPIL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID ++CLENL L+ Q +L R++ I+ + T + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ M + APE+L+ L F+D R+ +L F YRAR++P TL+ E+ W
Sbjct: 367 DGFFSQADKNNMSILRSLAPEELAHHGLQFADPRVEKLLFHYRARHYPETLTRAEQIKWQ 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L SR E++ +++L + DE K L+ L Y+ +
Sbjct: 427 KYCHQQLD-SRAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQI 471
>gi|327394409|dbj|BAK11831.1| exodeoxyribonuclease I SbcB [Pantoea ananatis AJ13355]
Length = 412
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/412 (52%), Positives = 289/412 (70%), Gaps = 3/412 (0%)
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
ITGITPQ A GV EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y
Sbjct: 1 MITGITPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPY 60
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
WSW NGNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+ H NAHDA
Sbjct: 61 GWSWQNGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAM 120
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
+DVYATLA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+
Sbjct: 121 SDVYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTS 180
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
+ P+AWHP ++++I +L+GDM LD+ L +RL+T EL +P+K VH+N
Sbjct: 181 WVVPLAWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHIN 240
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDV 356
KCP+L P + + E R GID K CL+NL LRQ +R++ AI+ +P+T S DV
Sbjct: 241 KCPVLAPANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSD-DV 299
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+QLYDGFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E
Sbjct: 300 DTQLYDGFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAE 359
Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+Q WL+HR+++L +++ + +L+SL+ ++ D+ K + ALY Y Q ++
Sbjct: 360 QQRWLQHRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELV 411
>gi|59712089|ref|YP_204865.1| exonuclease I [Vibrio fischeri ES114]
gi|59480190|gb|AAW85977.1| exonuclease I [Vibrio fischeri ES114]
Length = 474
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/466 (47%), Positives = 302/466 (64%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WSW N
Sbjct: 69 PQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA+YA P+GI WP ++G SFKL++L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L +++ +PK+F YL RNK + LIDI MTPL+HVSGMFG R N + I PVA
Sbjct: 189 IELAKKVKQAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++VI +L+ D VF +L+ +L +R++T EL +PVP+K VHLNKCP+L
Sbjct: 249 WHPTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLVHLNKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYD 362
P E+ +D + CL NL ++R+ +R + +Y+ +P S +VD+ LYD
Sbjct: 309 APAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTLLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ +D I ++ PEQL +D R+ L FRYRARNFPHTL+E E+ W
Sbjct: 369 GFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLRWHA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + ++ + +Y+ ++L E +G++ K ++ A+Y Y+Q +I
Sbjct: 429 HLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLI 473
>gi|117619062|ref|YP_856430.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560469|gb|ABK37417.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 564
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/462 (46%), Positives = 310/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG A DRPAQFAG+R D + I V +CKP DYLP+PEA ITGIT
Sbjct: 102 FYFHDYETFGISPAKDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYLPEPEACLITGIT 161
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA++DG+ EA+F R+IH+ F+ P TC++GYN+IRFDD +R YRNFYD Y ++W N
Sbjct: 162 PQKAMKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQN 221
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD+LD++RA YA P+GI+W ++G SFKL+ L +ANG+ H NAHDA +DV AT
Sbjct: 222 GNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFKLEKLTVANGVAHANAHDALSDVLAT 281
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L+++ +PKLF YL+D RNKN+++ LID+ M PLVHVSGMF + + ++P+A
Sbjct: 282 IEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSPLA 341
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+ D +L S ++ +RL+T +EL L +P+K VH+NKCP+L
Sbjct: 342 WHPSNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCPVLA 401
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-DVDSQLYDG 363
P E ++ GID ++C ++L LLR +R++ ++N+ + ++ D D+QLY G
Sbjct: 402 PAATLTAERADQLGIDREQCRKSLDLLRAHPEVREKLVEVFNQEFAGNNDGDPDTQLYAG 461
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W H
Sbjct: 462 FFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWRLH 521
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+R R+ +Y +L+ L+ + +G+E ++ +LY YL+
Sbjct: 522 CSDYFSR-RLPDYVPRLEELAEQNQGNERNFAILKSLYHYLE 562
>gi|330829787|ref|YP_004392739.1| exodeoxyribonuclease I [Aeromonas veronii B565]
gi|328804923|gb|AEB50122.1| Exodeoxyribonuclease I [Aeromonas veronii B565]
Length = 471
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/462 (46%), Positives = 310/462 (67%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG A DRP+QFAG+R D + I V +CKP DYLPDPEA ITGIT
Sbjct: 9 FYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD +R YRNFYD Y +SW N
Sbjct: 69 PQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD+LD++RA YA P+GI+W D+G SF+L+ L + NG+ H NAHDA +DV AT
Sbjct: 129 GNSRWDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTVGNGVAHANAHDALSDVLAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L+++ +PKLF YL+D RNKN+++ LID+ M PLVHVSGMF + + ++P+A
Sbjct: 189 IEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+ D +L S ++ +RL+T +EL L +P+K VH+NKCP+L
Sbjct: 249 WHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCPVLA 308
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-DVDSQLYDG 363
P E + GI+ ++C ++L LLR +R++ ++N+ + S++ D D+QLY G
Sbjct: 309 PAATLTAERADELGINREQCRKSLDLLRAHPEVREKLVEVFNQEFAGSNESDPDTQLYAG 368
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W H
Sbjct: 369 FFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWRLH 428
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+R R+ +Y +L++L+ + + +E ++ +LY YL+
Sbjct: 429 CSDYFSR-RLPDYVPRLEALAEQNQSNERNFAILKSLYHYLE 469
>gi|301156280|emb|CBW15751.1| exonuclease I [Haemophilus parainfluenzae T3T1]
Length = 473
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/463 (48%), Positives = 311/463 (67%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ +I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R N A +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCAWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP +++VI C+LSGD+ +V L + L+T EL +G+ +P+K VH+NKCPI
Sbjct: 247 WHPTNQNAVIVCDLSGDINNLLSKSAVDLRQDLYTKKSELEERGVSSIPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L P E+ R GID + CL+NL LRQ ++R++ I++ S +V+++LY
Sbjct: 307 LAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSGEREFEPSNNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR P E+L+ L F D+R+PEL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRDLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLNRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R++ L +S + +++ LQ L+ EY + K L+ +YEY
Sbjct: 426 QKYRQRKLEQSAV-KFEESLQRLAEEYSDNPTKLNLLQQVYEY 467
>gi|197335521|ref|YP_002156294.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
gi|197317011|gb|ACH66458.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
Length = 474
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/466 (47%), Positives = 301/466 (64%), Gaps = 3/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WSW N
Sbjct: 69 PQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA+YA P+GI WP ++G SFKL++L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++E +PK+F YL RNK + LIDI MTPL+HVSGMFG R N + I PVA
Sbjct: 189 IELAKKVKEAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++VI +L+ D VF L+ +L +R++T +L +PVP+K VHLNKCP+L
Sbjct: 249 WHPTNNNAVITIDLALDPSVFLKLNVEELHQRMYTKRSDLGPDELPVPVKLVHLNKCPVL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYD 362
P E+ +D + CL NL ++R+ +R + +Y+ +P S +VD+ LYD
Sbjct: 309 APAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTLLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ +D I ++ PEQL +D R+ L FRYRARNFPHTL+E E+ W
Sbjct: 369 GFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLRWHA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + ++ + +Y+ ++L E +G++ K ++ A+Y Y+Q +I
Sbjct: 429 HLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLI 473
>gi|312884477|ref|ZP_07744181.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367789|gb|EFP95337.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
Length = 474
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/467 (49%), Positives = 306/467 (65%), Gaps = 5/467 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP QFAGVR DR + I V +C+P +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGTNPATDRPCQFAGVRTDRDFNIIGEPVVLYCQPPNDYLPSPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA +G++E EF +IH+ + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAQAEGLIEPEFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+GI WP D+G SFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRACHALRPEGINWPQNDEGFPSFKLEHLSVANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + I +PKLF+Y D R+K +L LIDI NMTPL+HVSGM G T+ I PVA
Sbjct: 189 IEMAKKISVAQPKLFQYFLDMRHKRKLNDLIDIVNMTPLMHVSGMLGKECQYTSWIVPVA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D DL++ QL +RL+T EL V PIK VHLNK PIL
Sbjct: 249 WHPTNQNAVICIDLARDPSAIFDLNAQQLHERLYTKRSELNDKEVSAPIKLVHLNKSPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQLY 361
P E +R GID + CLENL +LR +R++ +Y+ + + SS DVD+ LY
Sbjct: 309 APAKTLTAEDAQRIGIDREACLENLAMLRNHPEIREKLIGVYSIEREFKKSS-DVDAMLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF D+ M I T PE LSTL++ F D R+ +L FRYRARNFP TLSE E+Q W
Sbjct: 368 DGFFNPADKTAMKIIRETDPECLSTLDISFDDERISKLLFRYRARNFPWTLSEPEQQKWA 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ + RIE+Y L++L E++ + ++ ++Y++++ ++
Sbjct: 428 NHCREYFEQ-RIEDYMLNLENLVHEHEQCPKQMAILKSIYQHVETLV 473
>gi|329120482|ref|ZP_08249147.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
gi|327461940|gb|EGF08270.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
Length = 521
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/467 (47%), Positives = 315/467 (67%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYETFG A DRPAQFAG+R D + + +CK +DYLP PE+V IT IT
Sbjct: 55 FFIYDYETFGIHPARDRPAQFAGIRTDPDFNPVADPITLYCKQTNDYLPSPESVLITSIT 114
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ + GV E EF+ RI FS PNTCI+GYNNIR+DD +R+ FYRNF D Y +S+ N
Sbjct: 115 PQECNQKGVPEPEFAARICAEFSQPNTCIMGYNNIRYDDEITRHTFYRNFLDPYEYSYQN 174
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP ++G F+L+ L ANGIEH +AHDA +DVYAT
Sbjct: 175 GNSRWDLLDVVRACHALRPEGIEWPRDENGLPVFRLEQLTAANGIEHAHAHDALSDVYAT 234
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL LI++K+P+LF + ++ R K L +IDI+ TPLVH+SGMFG +R NTALIAP++
Sbjct: 235 IALAKLIKQKQPRLFRFFFENRGKAPLAAMIDIRRHTPLVHISGMFGNARRNTALIAPLS 294
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP K++VI C+LS D+R +L++ L +RL+T + L +G +PVP+K VH+NKCPI
Sbjct: 295 WHPSNKNAVIACDLSADLRDLLNLNADTLRERLYTPKETLLAQGALPVPLKLVHINKCPI 354
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L P + + E ER GID+ C NL L+ +R + + I+ + + S +V+++LY
Sbjct: 355 LTPRNVLRDEDAERLGIDNTICQNNLAALQNAPEIRQKVQQIFRETRQFAPSDNVETELY 414
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+ D+Q + + PEQL+ LPF D R+P+L F YRAR+F TL+ E+ W
Sbjct: 415 NGFFSPADKQNLATLRTLPPEQLANHGLPFQDPRIPQLLFHYRARHFYPTLTRAEQIQWQ 474
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++R+K L + + ++ LQ+L+ + + K L+ A+Y+Y + ++
Sbjct: 475 KYRRKKL-EAALPDFSQSLQNLAEQNADNPDKLLLLQAVYQYAERLL 520
>gi|325578381|ref|ZP_08148516.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
gi|325160117|gb|EGC72246.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
Length = 473
Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/463 (48%), Positives = 311/463 (67%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGINPASDRPAQFAGIRTDANFNIIGEPVMLYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ +I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF++ +++R K ++ KL+D MTPLVHVSGM G R N A +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQFFFEHRGKKEIEKLLDTAEMTPLVHVSGMLGNYRGNCAWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP +++VI C+LSGD+ +V L + L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L P E+ R GID + CL+NL LRQ ++R++ I+++ S +V+++LY
Sbjct: 307 LAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF+ D+ M ILR P E+L+ L F D+R+PEL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSSADKNNM-AILRDLPAEKLAGHGLAFEDKRIPELLFHYRARHFYKTLNRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R++ L +S + +++ LQ L+ EY + K L+ +YEY
Sbjct: 426 QKYRQRKLEQSAV-KFEESLQQLAEEYSDNPTKLNLLQQVYEY 467
>gi|145299357|ref|YP_001142198.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142852129|gb|ABO90450.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 475
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/462 (46%), Positives = 309/462 (66%), Gaps = 2/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG A DRP+QFAG+R D + I V +CKP DYLPDPEA ITGIT
Sbjct: 13 FYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITGIT 72
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD +R YRNFYD Y ++W N
Sbjct: 73 PQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQN 132
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD+LD++RA YA P+GI+W ++G SF+L+ L +ANG+ H NAHDA +DV AT
Sbjct: 133 GNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFRLEKLTVANGVSHANAHDALSDVLAT 192
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L+++ +PKLFEYL+ RNKN+++ LID+ M PLVHVSGMF + + I+P+A
Sbjct: 193 IEMAKLVKKAQPKLFEYLFTLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCVSWISPLA 252
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+ D +L S ++ +RL+T DEL L +P+K VH+NKC +L
Sbjct: 253 WHPTNQNAVIMVDLTRDPTPLIELSSEEIRERLYTRKDELGDLAAIPVKLVHINKCRVLA 312
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-DVDSQLYDG 363
P E + ID ++C ++L LLR +R++ ++N+ + S+ D D+QLY G
Sbjct: 313 PAATLTPERADELTIDREQCRKSLNLLRAHPEVREKLVEVFNQEFEGSNDPDPDTQLYAG 372
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W H
Sbjct: 373 FFGHGDKSTMDLVRATPADLLGEREFAFTDARLPEMLFRYRARNWPHTLSEAEQKRWRLH 432
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+R R+ +Y +L++L+ + +G+E ++ +LY YL+
Sbjct: 433 CSDYFSR-RLPDYAPRLEALAEQNQGNERNFAILKSLYRYLE 473
>gi|86146813|ref|ZP_01065133.1| exonuclease I [Vibrio sp. MED222]
gi|218709702|ref|YP_002417323.1| exonuclease I [Vibrio splendidus LGP32]
gi|85835463|gb|EAQ53601.1| exonuclease I [Vibrio sp. MED222]
gi|218322721|emb|CAV18897.1| Exodeoxyribonuclease I [Vibrio splendidus LGP32]
Length = 474
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/463 (48%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT IT
Sbjct: 9 YFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAASQGLPEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA++A P+GI WP ++G SFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PK+F+YLY+ R+K +L L+DI NMTPL+HVSGMFG + T+ I P+A
Sbjct: 189 IELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIVPMA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D +LD+ +L RL+T EL + +PVPIK V LNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELSEDELPVPIKLVQLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ E GID ++CL+NL LLR+ +R++ +Y++ S DVD+ LYD
Sbjct: 309 APAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ M+ I T P L+ L++ FSD R+ L FRYRARNFP TL E E+ W
Sbjct: 369 GFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARNFPWTLDEAEQLKWAN 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H ++ R+EEY L++L+ E++ DE K ++ A+Y+Y++
Sbjct: 429 HCREFY-ECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVE 470
>gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1]
gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1]
Length = 473
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/473 (47%), Positives = 304/473 (64%), Gaps = 6/473 (1%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+ H + +DYET+G A DR QFAGVR D + I V +C+P DYLP PEA
Sbjct: 1 MSQHQPTYFFFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEA 60
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
ITGITPQ G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D
Sbjct: 61 ALITGITPQLCQEKGLSEPEFIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDP 120
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y WSW NGNSRWDLLDVMRA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA
Sbjct: 121 YAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHENAHDA 180
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
ADV AT+ L ++ +PKLF+Y Y R K +L +L+DI NMTPL+HVSGM G T
Sbjct: 181 MADVIATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYT 240
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVH 296
+ + P+AWHP +++VI +L+ D + DLD L +RL+T HDEL PVP+K +H
Sbjct: 241 SWVVPIAWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIH 300
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQD 355
LNKCPIL P E+ E GID ++CL+NL L++Q +R++ +Y+ + + D
Sbjct: 301 LNKCPILAPAKTLTAENAESIGIDREQCLKNLALIKQHPEIREKLIGLYSIEREFENDGD 360
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
VD+QLY GFF+ D+ MD I T P LS L++ FSD R+ L FRYRARNFP +L E
Sbjct: 361 VDTQLYSGFFSPADKSAMDIIRETDPNNLSALDISFSDPRIEPLLFRYRARNFPWSLDET 420
Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
E+ W H ++ SRIE Y +++L E++ DE K ++ ++Y Y++ ++
Sbjct: 421 EQARWANHCREFF-ESRIESYMLNMENLVHEHESDEKKLAILKSVYRYVERLV 472
>gi|260582707|ref|ZP_05850495.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
gi|260094273|gb|EEW78173.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
Length = 473
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/463 (49%), Positives = 310/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KLID MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLIDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKLELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS +L F DRR+PEL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHSLAFEDRRIPELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 QKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|190149982|ref|YP_001968507.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307263310|ref|ZP_07544928.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|189915113|gb|ACE61365.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871372|gb|EFN03098.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 514
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 311/463 (67%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+V LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMVKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNMS-ILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ + + ++ ++ + SL + + K L+ L Y
Sbjct: 426 QKYCHQQID-AKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAY 467
>gi|229525835|ref|ZP_04415240.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
gi|229339416|gb|EEO04433.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
Length = 478
Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 13 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 72
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 73 PQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 132
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 133 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 192
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 193 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPIA 252
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 253 WHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 312
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 313 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYA 372
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 373 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 432
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 433 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 474
>gi|170717586|ref|YP_001784670.1| exonuclease I [Haemophilus somnus 2336]
gi|168825715|gb|ACA31086.1| Exodeoxyribonuclease I [Haemophilus somnus 2336]
Length = 476
Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/462 (48%), Positives = 313/462 (67%), Gaps = 4/462 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D+ + I +F+CK DDYLP PE+V +TGIT
Sbjct: 7 FFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ G+ E EF+ +I FS PNTCI+GYNN+R+DD +R FYRNF D Y +SW N
Sbjct: 67 PQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDL+DV+RA YA PDGI W DDG SF+L+ L NGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G R NT+ + P+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCPI 302
WHP +++VI C+L+ D+ +V+L + L+T EL+ ++PVP+K VH+NKCPI
Sbjct: 247 WHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLY 361
L P E+ + GID + CL+NL LRQ ++RD+ I+ ++ S +V+++LY
Sbjct: 307 LAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+ FF++ D+ M + + +PE+L+ NL FSD+R+P+L F YRAR+F TL E+ W
Sbjct: 367 NQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRIPDLLFHYRARHFYKTLDRSEQIKWQ 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R++ L +S + +++ LQ L EY+ + K L+ +YEY
Sbjct: 427 KYRQRKLEKSAV-QFEESLQRLVEEYQNNPEKLLLLQQVYEY 467
>gi|254362095|ref|ZP_04978217.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
gi|153093654|gb|EDN74613.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
Length = 515
Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/467 (49%), Positives = 306/467 (65%), Gaps = 6/467 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y +SW N
Sbjct: 67 PQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA +DVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAMSDVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA + P+A
Sbjct: 187 IAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTAWVVPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WH +++VI C+LSGDM ++ L +RL+T DEL + +PVP+K VH+NKCPIL
Sbjct: 247 WHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELPVPLKLVHINKCPIL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ ER GID CLENL L+ Q +L R++ I+N+ T S +V++ LY
Sbjct: 307 APAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTNVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT PE L+ L F D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+H + + ++ ++ + L ++ + K L+ L Y + +
Sbjct: 426 QKHCNQQI-EAKAAQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQI 471
>gi|240949271|ref|ZP_04753615.1| exonuclease I [Actinobacillus minor NM305]
gi|240296387|gb|EER47031.1| exonuclease I [Actinobacillus minor NM305]
Length = 514
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/466 (47%), Positives = 310/466 (66%), Gaps = 4/466 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG + A+DRPAQFAG+R D Q+ I +F+CK DYLP PEAV +TGI
Sbjct: 7 FFFYDYESFGVNPAVDRPAQFAGIRTDDQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGIL 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +G+ E EF+ RIH FS PNTC+IGYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI W ++G +FKL++L ANGI H NAHDA +DVYAT
Sbjct: 127 GNSRWDLLDVVRACYALRPEGIDWVKDEEGIPNFKLENLTKANGIAHENAHDAMSDVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+++ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R NTA + P+A
Sbjct: 187 ISMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI C+LSGD++ + S L RL+T EL + PVP+K VH+NKCPIL
Sbjct: 247 WHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPIL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID ++CLENL L+ Q +L R++ I+ + T + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ M + APE+L+ L F+D R+ +L F YRAR++P TL+ E+ W
Sbjct: 367 DGFFSQADKNNMSILRSLAPEELAHHGLQFADLRVEKLLFHYRARHYPETLTRAEQIKWQ 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L R E++ +++L + DE K L+ L Y+ +
Sbjct: 427 KYCHQQLDL-RAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQI 471
>gi|260772965|ref|ZP_05881881.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
gi|260612104|gb|EEX37307.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
Length = 480
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 305/463 (65%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F DYET+G A DRP+QFAGVR D + I V +C+ DYLP PEA ITGIT
Sbjct: 15 FFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALITGIT 74
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+ +G+ E EF RIH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 75 PQKAMAEGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQQ 134
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+GI+WP +G TSFKL+ L+ ANGIEH NAHDA ADV AT
Sbjct: 135 GNSRWDLLDVMRACHALRPEGIEWPENQEGFTSFKLEHLSKANGIEHSNAHDAMADVIAT 194
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L I+ +PKLF+Y R+K +L L+DI NMTPL+HVSGM G RS T+ + P+A
Sbjct: 195 IELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRERSYTSWVVPIA 254
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ + +L S QL +RL+T HD+L +G +P P+K +HLNKCPIL
Sbjct: 255 WHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKCPIL 314
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ GI+ ++CL +L+ +RQQ LR++ +++ S+S DVDSQLYD
Sbjct: 315 APAKTLTAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQLYD 374
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR MD I APE L+ L++ FSD+R+ L FRYRAR++P TL+E E++ W
Sbjct: 375 GFFSPSDRAAMDIIRSAAPESLADLDIQFSDQRIAPLLFRYRARHYPWTLNETEQRRWAS 434
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + +++ Y L++L +++ D K ++ A+Y Y++
Sbjct: 435 HCQDYFA-TQLPSYMLNLENLVEQHQHDAKKIAILKAVYHYVE 476
>gi|303250424|ref|ZP_07336622.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307252223|ref|ZP_07534120.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302650750|gb|EFL80908.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306860145|gb|EFM92161.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 514
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/463 (48%), Positives = 310/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNMS-ILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ + + ++ ++ + SL + + K L+ L Y
Sbjct: 426 QKYCHQQID-AKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAY 467
>gi|261494569|ref|ZP_05991051.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309760|gb|EEY10981.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 515
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/467 (49%), Positives = 306/467 (65%), Gaps = 6/467 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y +SW N
Sbjct: 67 PQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA +DVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAMSDVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA + P+A
Sbjct: 187 IAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTAWVVPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WH +++VI C+LSGDM ++ L +RL+T DEL + + VP+K VH+NKCPIL
Sbjct: 247 WHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHINKCPIL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ ER GID CLENL L+ Q +L R++ I+N+ T S +V++ LY
Sbjct: 307 APAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTNVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT PE L+ L F D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+H + + ++ E++ + L ++ + K L+ L Y + +
Sbjct: 426 QKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQI 471
>gi|307245526|ref|ZP_07527613.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307254482|ref|ZP_07536318.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258940|ref|ZP_07540671.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306853585|gb|EFM85803.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306862532|gb|EFM94490.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866964|gb|EFM98821.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 514
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/463 (48%), Positives = 310/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVGPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNMS-ILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ + + ++ ++ + SL + + K L+ L Y
Sbjct: 426 QKYCHQQID-AKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAY 467
>gi|315180353|gb|ADT87267.1| exonuclease I [Vibrio furnissii NCTC 11218]
Length = 473
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 304/463 (65%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ +DYET+G A DRP+QFAGVR D ++ I V +C+ DYLP PEA ITGI
Sbjct: 8 YFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPTPEAALITGII 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+ G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 68 PQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G+ WP D+G TSFKL+ L+ ANGIEH NAHDA ADV AT
Sbjct: 128 GNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADVIAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLFEY + R+K +L +LIDI NMTPL+HVSGM G T+ I P+A
Sbjct: 188 IELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVPIA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D + DLD L RL+T HD+L +PVP+K VHLNKCPIL
Sbjct: 248 WHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPIL 307
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYD 362
P E+ GID + CL NL +RQ ++R++ A+++ + +S DVD+QLYD
Sbjct: 308 APAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYD 367
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ M+ I T PE L L++ FSD+R+ L FRYRARNFP TL ++E++ W
Sbjct: 368 GFFSPADKAAMEIIRSTNPELLGELDITFSDKRIEPLLFRYRARNFPWTLDDEEQRRWAN 427
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + + + +Y L++L E++ DE K ++ ++Y+Y++
Sbjct: 428 HCRDYY-ETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVE 469
>gi|261492018|ref|ZP_05988593.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261312301|gb|EEY13429.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 515
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/467 (49%), Positives = 306/467 (65%), Gaps = 6/467 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y +SW N
Sbjct: 67 PQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA +DVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAMSDVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA + P+A
Sbjct: 187 IAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTAWVVPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WH +++VI C+LSGDM ++ L +RL+T DEL + + VP+K VH+NKCPIL
Sbjct: 247 WHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHINKCPIL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ ER GID CLENL L+ Q +L R++ I+N+ T S +V++ LY
Sbjct: 307 APAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTNVENTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT PE L+ L F D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+H + + ++ E++ + L ++ + K L+ L Y + +
Sbjct: 426 QKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQI 471
>gi|262402419|ref|ZP_06078980.1| exodeoxyribonuclease I [Vibrio sp. RC586]
gi|262351201|gb|EEZ00334.1| exodeoxyribonuclease I [Vibrio sp. RC586]
Length = 474
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/463 (47%), Positives = 310/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVIRACYALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIMVDLGKDPQPLLDLDADALQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQLY+
Sbjct: 309 APAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQLYE 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I T+P+ L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTSPDNLGSLEIKVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ DE K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVE 470
>gi|258620230|ref|ZP_05715269.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
gi|258587588|gb|EEW12298.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
Length = 474
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 311/463 (67%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQLY+
Sbjct: 309 APAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQLYE 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ DE K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVE 470
>gi|165976088|ref|YP_001651681.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|307256692|ref|ZP_07538471.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|165876189|gb|ABY69237.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|306864740|gb|EFM96644.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 514
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/420 (51%), Positives = 292/420 (69%), Gaps = 5/420 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
>gi|307249878|ref|ZP_07531852.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306858067|gb|EFM90149.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 514
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/463 (47%), Positives = 309/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P++L+ L F+ R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPQELAHHGLQFAGERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ + + + ++ + SL + + K L+ L Y
Sbjct: 426 QKYCHQQIDAKSV-QFAEAIDSLFQIHHDNPEKVKLLENLTAY 467
>gi|262165491|ref|ZP_06033228.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
gi|262025207|gb|EEY43875.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
Length = 474
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 311/463 (67%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ E+ GID ++CL +L ++RQ +R++ +++++ + +VDSQLY+
Sbjct: 309 APAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQLYE 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I T+P+ L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTSPDNLGSLEIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ DE K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVE 470
>gi|229515610|ref|ZP_04405069.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
gi|229347379|gb|EEO12339.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
Length = 478
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 13 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 72
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 73 PQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 132
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 133 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 192
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 193 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 252
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 253 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 312
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 313 APAKTLTSENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYA 372
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 373 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 432
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 433 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 474
>gi|254226438|ref|ZP_04920025.1| exodeoxyribonuclease I [Vibrio cholerae V51]
gi|125621060|gb|EAZ49407.1| exodeoxyribonuclease I [Vibrio cholerae V51]
Length = 474
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYT 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|260768651|ref|ZP_05877585.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
gi|260616681|gb|EEX41866.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
Length = 473
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 304/463 (65%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ +DYET+G A DRP+QFAGVR D ++ I V +C+ DYLP PEA ITGI
Sbjct: 8 YFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGII 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+ G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 68 PQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA +A P+G+ WP D+G TSFKL+ L+ ANGIEH NAHDA ADV AT
Sbjct: 128 GNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADVIAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLFEY + R+K +L +LIDI NMTPL+HVSGM G T+ I P+A
Sbjct: 188 IELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVPIA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D + DLD L RL+T HD+L +PVP+K VHLNKCPIL
Sbjct: 248 WHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPIL 307
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYD 362
P E+ GID + CL NL +RQ ++R++ A+++ + +S DVD+QLYD
Sbjct: 308 APAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYD 367
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ M+ I T PE L L++ FSD+R+ L FRYRARNFP TL ++E++ W
Sbjct: 368 GFFSPADKAAMEIIRSTNPELLGELDITFSDKRIDPLLFRYRARNFPWTLDDEEQRRWAN 427
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + + + +Y L++L E++ DE K ++ ++Y+Y++
Sbjct: 428 HCRDYY-ETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVE 469
>gi|229521349|ref|ZP_04410768.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
gi|229341447|gb|EEO06450.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
Length = 478
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 13 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 72
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 73 PQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 132
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 133 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 192
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 193 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 252
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 253 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 312
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 313 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYA 372
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 373 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 432
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 433 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 474
>gi|153829736|ref|ZP_01982403.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
gi|262191424|ref|ZP_06049612.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
gi|148874770|gb|EDL72905.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
gi|262032713|gb|EEY51263.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
Length = 474
Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|303252408|ref|ZP_07338574.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307247643|ref|ZP_07529685.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|302648867|gb|EFL79057.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306855855|gb|EFM88016.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
Length = 514
Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/463 (48%), Positives = 309/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P +L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ + + ++ ++ + SL + + K L+ L Y
Sbjct: 426 QKYCHQQID-AKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAY 467
>gi|145639026|ref|ZP_01794634.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
gi|145271998|gb|EDK11907.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
gi|309750985|gb|ADO80969.1| Exodeoxyribonuclease I [Haemophilus influenzae R2866]
Length = 473
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/463 (48%), Positives = 309/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D +MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|327483926|gb|AEA78333.1| Exodeoxyribonuclease I [Vibrio cholerae LMA3894-4]
Length = 474
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|309973062|gb|ADO96263.1| Exodeoxyribonuclease I [Haemophilus influenzae R2846]
Length = 473
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/463 (48%), Positives = 309/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+DI MTPLVHVSGM G R N +AP++
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDIGAMTPLVHVSGMLGNYRGNCTWVAPLS 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 QKYRQNKLEKSAV-EFQSGLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|229529683|ref|ZP_04419073.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
gi|229333457|gb|EEN98943.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
Length = 478
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 13 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 72
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 73 PQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 132
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ +++ANGIEH NAHDA ADV AT
Sbjct: 133 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHISVANGIEHSNAHDAMADVIAT 192
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 193 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 252
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 253 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 312
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 313 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQDSDVDSQLYA 372
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 373 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 432
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 433 HCRDYFERN-LEGYMVNLENLVHEHQADPKKMAILKSVYHYVE 474
>gi|229505177|ref|ZP_04394687.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
gi|229511152|ref|ZP_04400631.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|229518270|ref|ZP_04407714.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
gi|229608197|ref|YP_002878845.1| exonuclease I [Vibrio cholerae MJ-1236]
gi|229344985|gb|EEO09959.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
gi|229351117|gb|EEO16058.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|229357400|gb|EEO22317.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
gi|229370852|gb|ACQ61275.1| exodeoxyribonuclease I [Vibrio cholerae MJ-1236]
Length = 478
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 13 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 72
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 73 PQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 132
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 133 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 192
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 193 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 252
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 253 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 312
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 313 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYA 372
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 373 GFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRRWAA 432
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 433 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 474
>gi|145631376|ref|ZP_01787147.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
gi|144983035|gb|EDJ90539.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
Length = 473
Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/463 (48%), Positives = 309/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E +R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|148826847|ref|YP_001291600.1| exonuclease I [Haemophilus influenzae PittGG]
gi|148718089|gb|ABQ99216.1| exodeoxyribonuclease I [Haemophilus influenzae PittGG]
Length = 473
Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/463 (48%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EFS I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFSANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP++
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMTPLVHVSGMLGNYRGNCTWVAPLS 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|262171739|ref|ZP_06039417.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
gi|261892815|gb|EEY38801.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
Length = 474
Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 311/463 (67%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP P+A ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPDAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQLY+
Sbjct: 309 APAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQLYE 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ DE K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVE 470
>gi|153826959|ref|ZP_01979626.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
gi|149739207|gb|EDM53479.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
Length = 474
Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|297578829|ref|ZP_06940757.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
gi|297536423|gb|EFH75256.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
Length = 474
Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 306/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTGLIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|15641247|ref|NP_230879.1| exonuclease I [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591211|ref|ZP_01678513.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
gi|121728822|ref|ZP_01681834.1| exodeoxyribonuclease I [Vibrio cholerae V52]
gi|147674379|ref|YP_001216801.1| exonuclease I [Vibrio cholerae O395]
gi|153819174|ref|ZP_01971841.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
gi|153823017|ref|ZP_01975684.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|227081406|ref|YP_002809957.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
gi|254848359|ref|ZP_05237709.1| exonuclease I [Vibrio cholerae MO10]
gi|255745633|ref|ZP_05419581.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
gi|262159091|ref|ZP_06030203.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
gi|262169449|ref|ZP_06037141.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
gi|298498672|ref|ZP_07008479.1| exonuclease I [Vibrio cholerae MAK 757]
gi|9655715|gb|AAF94393.1| exodeoxyribonuclease I [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121546936|gb|EAX57085.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
gi|121628910|gb|EAX61366.1| exodeoxyribonuclease I [Vibrio cholerae V52]
gi|126510260|gb|EAZ72854.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
gi|126519445|gb|EAZ76668.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|146316262|gb|ABQ20801.1| exodeoxyribonuclease I [Vibrio cholerae O395]
gi|227009294|gb|ACP05506.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
gi|227013151|gb|ACP09361.1| exodeoxyribonuclease I [Vibrio cholerae O395]
gi|254844064|gb|EET22478.1| exonuclease I [Vibrio cholerae MO10]
gi|255736708|gb|EET92105.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
gi|262022262|gb|EEY40971.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
gi|262029276|gb|EEY47928.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
gi|297543005|gb|EFH79055.1| exonuclease I [Vibrio cholerae MAK 757]
Length = 474
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|258624410|ref|ZP_05719357.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
gi|258583257|gb|EEW08059.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
Length = 474
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 311/463 (67%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAH+A ADV AT
Sbjct: 129 GNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHNAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQLY+
Sbjct: 309 APAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQLYE 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ DE K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVE 470
>gi|254291686|ref|ZP_04962473.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
gi|150422370|gb|EDN14330.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
Length = 474
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRDRHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYLLNLENLVHEHQADPKKIAILKSVYHYVE 470
>gi|153801904|ref|ZP_01956490.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
gi|124122549|gb|EAY41292.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
Length = 474
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 306/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQR 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQERGFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|153212250|ref|ZP_01948038.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
gi|124116628|gb|EAY35448.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
Length = 474
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 307/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +L++ L RL+T +++L +PVP+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELNAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQLY
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYA 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|68250106|ref|YP_249218.1| exonuclease I [Haemophilus influenzae 86-028NP]
gi|148825915|ref|YP_001290668.1| exonuclease I [Haemophilus influenzae PittEE]
gi|68058305|gb|AAX88558.1| exodeoxyribonuclease I [Haemophilus influenzae 86-028NP]
gi|148716075|gb|ABQ98285.1| exodeoxyribonuclease I [Haemophilus influenzae PittEE]
Length = 473
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP++
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLS 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 QKYRQNKLEKSAV-EFQSGLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|113461015|ref|YP_719082.1| exonuclease I [Haemophilus somnus 129PT]
gi|112823058|gb|ABI25147.1| Exodeoxyribonuclease I subunit C [Haemophilus somnus 129PT]
Length = 486
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/469 (47%), Positives = 314/469 (66%), Gaps = 4/469 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D+ + I +F+CK DDYLP PE+V +TGIT
Sbjct: 17 FFIYDYESFGINPATDRPAQFAGIRTDQNFNIIGEPVMFYCKQTDDYLPSPESVLVTGIT 76
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ G+ E EF+ +I FS PNTCI+GYNN+R+DD +R FYRNF D Y +SW N
Sbjct: 77 PQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKN 136
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDL+DV+RA YA PDGI W DDG SF+L+ L NGIEH NAHDA ADVYAT
Sbjct: 137 GNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYAT 196
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G R NT+ + P+A
Sbjct: 197 IAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPLA 256
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCPI 302
WHP +++VI C+L+ D+ +V+L + L+T EL+ ++PVP+K VH+NKCPI
Sbjct: 257 WHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPI 316
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLY 361
L P E+ + GID + CL+NL LRQ ++RD+ I+ ++ S +V+++LY
Sbjct: 317 LAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELY 376
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
FF++ D+ M + + +PE+L+ NL FSD+R+ +L F YRAR+F TL E+ W
Sbjct: 377 KQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRISDLLFHYRARHFYKTLDRSEQIKWQ 436
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
++R++ L +S + +++ LQ L EY+ + + L+ +YEY ++ K
Sbjct: 437 KYRQRKLEKSVV-QFEESLQRLVEEYQNNPEELLLLQQVYEYGATLLSK 484
>gi|307261134|ref|ZP_07542811.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306869164|gb|EFN00964.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 514
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/463 (47%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +T IT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTDIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERRFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P +L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ + + ++ ++ + SL + + K L+ L Y
Sbjct: 426 QKYCHQQID-AKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAY 467
>gi|229846770|ref|ZP_04466877.1| exonuclease I [Haemophilus influenzae 7P49H1]
gi|229810259|gb|EEP45978.1| exonuclease I [Haemophilus influenzae 7P49H1]
Length = 473
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T +L +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|301170130|emb|CBW29734.1| exonuclease I [Haemophilus influenzae 10810]
Length = 473
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 307/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA DVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMEDVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|145632876|ref|ZP_01788609.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
gi|145634313|ref|ZP_01790023.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
gi|229844163|ref|ZP_04464304.1| exonuclease I [Haemophilus influenzae 6P18H1]
gi|319776340|ref|YP_004138828.1| exonuclease I [Haemophilus influenzae F3047]
gi|329123492|ref|ZP_08252056.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
gi|144986532|gb|EDJ93098.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
gi|145268293|gb|EDK08287.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
gi|229813157|gb|EEP48845.1| exonuclease I [Haemophilus influenzae 6P18H1]
gi|317450931|emb|CBY87157.1| exonuclease I [Haemophilus influenzae F3047]
gi|327471074|gb|EGF16529.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
Length = 473
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T +L +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|237807889|ref|YP_002892329.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
gi|237500150|gb|ACQ92743.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
Length = 506
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/465 (47%), Positives = 305/465 (65%), Gaps = 4/465 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N F+ +DYETFG D A DRPAQFAG+R D + V +C+ + DYLP PEA ITG
Sbjct: 42 NTFLFHDYETFGIDPARDRPAQFAGIRTDADFNICGEPVVIYCQMSPDYLPAPEACLITG 101
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A ++G+ EA+F R IHQ FS P TC++GYNNIRFDD ++R FYRNF D Y +SW
Sbjct: 102 ITPQIANQNGICEADFFRTIHQQFSQPATCVLGYNNIRFDDEFTRYGFYRNFLDPYAYSW 161
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDV RA YA P+GI W +G SF+L+ L++ANGI+H NAHDA +DVY
Sbjct: 162 QQGNSRWDLLDVARAFYALRPEGINWVYDAEGKPSFRLEKLSVANGIQHENAHDAMSDVY 221
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L +++ +P+LFEYL +R KN+L+ LIDI N+ PLVHVSGMF A + + IAP
Sbjct: 222 ATIGLAKSLKQAQPRLFEYLSTHRGKNKLKNLIDIINIKPLVHVSGMFSAVQGCVSWIAP 281
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++VI +L D+ +L+ +L +RL+T D++ PVP+K +H+NKCP+
Sbjct: 282 MAWHPTNNNAVIVIDLHKDLSPLLELNITELRERLYTRKDDITDGSPVPVKLIHINKCPV 341
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L P +E + GI+ C++NL +LRQ +R++ +++ Y ++QD + LY
Sbjct: 342 LAPASSLSEERAQELGINRDLCMQNLAVLRQNPQIREKLAGLFSDEYIPPANQDPEHMLY 401
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF++ DR +D I + + EQL+ F D RLP L FRYRARN+PHTLS +E+Q W
Sbjct: 402 QGFFSEADRAAIDLIQQASAEQLAAGQYQFHDPRLPTLLFRYRARNYPHTLSPREQQQWQ 461
Query: 422 EHRKKMLTRSRIEEYKNKLQS-LSGEYKGDEGKEGLINALYEYLQ 465
+ L SR E Y +L++ L G+ G + +I AL YLQ
Sbjct: 462 QFCVDALN-SRAEPYLLRLEALLEGKVPGTR-EWNIIKALALYLQ 504
>gi|15602476|ref|NP_245548.1| exonuclease I [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720883|gb|AAK02695.1| SbcB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 475
Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG D A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 9 FFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW N
Sbjct: 69 PQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W ++G SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 129 GNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KLID N+TPLVHVSGM G R NT I P+A
Sbjct: 189 IAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP +++VI C+L+ ++ + D+ +L + L+T EL KG++PVP+K VH+NKCPI
Sbjct: 249 WHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCPI 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
L P E+ R GID CLENL L+ +RD+ I+N+ + + S +V+++LY
Sbjct: 309 LAPAKTLLPENAARLGIDRTFCLENLQRLKLSPPIRDKVTEIFNEERHFAPSINVETELY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQ-LSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF D+ M ILR PE+ L+ L F D R+P+L F YRAR++ ++L+ E+ W
Sbjct: 369 NGFFDYNDKNNM-AILRHLPEEKLAEHGLAFKDTRIPKLLFHYRARHYFNSLTRAEQIQW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R K L + + +++ LQ L E + L+ +YEY
Sbjct: 428 QKYRHKKLDQVAL-QFEQSLQRLIAENSENPTNLALLQKVYEY 469
>gi|53729178|ref|ZP_00134021.2| COG2925: Exonuclease I [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208153|ref|YP_001053378.1| exonuclease I [Actinobacillus pleuropneumoniae L20]
gi|126096945|gb|ABN73773.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
Length = 514
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/463 (47%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFA +R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFACIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 67 PQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSGD+ + +L RL+T +EL + + PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEAVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ + + ++ ++ + SL + + K L+ L Y
Sbjct: 426 QKYCHQQID-AKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAY 467
>gi|319897029|ref|YP_004135224.1| exonuclease i [Haemophilus influenzae F3031]
gi|317432533|emb|CBY80893.1| exonuclease I [Haemophilus influenzae F3031]
Length = 473
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 308/463 (66%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W D G SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDAGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMGKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E +R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 467
>gi|52425136|ref|YP_088273.1| exonuclease I [Mannheimia succiniciproducens MBEL55E]
gi|52307188|gb|AAU37688.1| SbcB protein [Mannheimia succiniciproducens MBEL55E]
Length = 472
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/463 (47%), Positives = 311/463 (67%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYD+E+FG + A DRPAQFAG+R D+ + I +F+CK +DYLP PEAV +TGIT
Sbjct: 6 FFIYDFESFGVNPADDRPAQFAGIRTDKDFNIISDPVMFYCKQTNDYLPAPEAVMVTGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ RI FS PNTCI+G+NNIR+DD +R FYRNF D Y +SW N
Sbjct: 66 PQECNEKGISEPEFAARILAEFSQPNTCIMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 126 GNSRWDLLDLVRACYALRPEGINWPLDEEGMPSFRLEKLTKANGIEHENAHDAMADVYAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF++ ++ R K ++ K ID MTPLVHVSGM G R N IAP+A
Sbjct: 186 IAMAKLIKEKQPKLFQFFFENRGKKEIEKWIDTAEMTPLVHVSGMLGNYRGNCTWIAPLA 245
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCPI 302
WHP +++VI C+L+ ++ + +V+L + L+T EL+ G++PVP+K VH+NKCPI
Sbjct: 246 WHPINQNAVIACDLAQNIDDLLNKSAVELRENLYTQKTELENDGVLPVPLKLVHINKCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
+ P E+ +R GID + CL+NL L++ ++RD+ ++N+ S +V+++LY
Sbjct: 306 IAPAKTLLPENAQRLGIDRQFCLDNLKKLQKSLDIRDKVIEVFNEERKFDDSDNVETELY 365
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M ILRT PE+L+ L F D+R+P+L F YRAR+F TL+ E+ W
Sbjct: 366 SGFFSKADKNNM-TILRTLEPEKLADSGLQFEDKRIPDLLFHYRARHFYKTLNRGEQIKW 424
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R++ L +S + ++ LQ L E K L+ +Y+Y
Sbjct: 425 QKYRRQKLEKSAV-QFMESLQHLGEENSNHPDKLKLLQQIYDY 466
>gi|261211043|ref|ZP_05925333.1| exodeoxyribonuclease I [Vibrio sp. RC341]
gi|260840018|gb|EEX66618.1| exodeoxyribonuclease I [Vibrio sp. RC341]
Length = 474
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/463 (46%), Positives = 308/463 (66%), Gaps = 3/463 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITGIT
Sbjct: 9 FFFFDYETWGVNPAKDRPSQFAGVRTDIDFNIIGEPLVIYCQLPNDYLPAPEAALITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF RIH S P T +GYN+IRFDD +R YRNF D Y WSW +
Sbjct: 69 PQKANSLGLPEPEFIARIHAELSTPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQH 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVIRACHALRPEGMKWPENEDGFTSFKLERLSVANGIEHSNAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P+A
Sbjct: 189 IELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
WHP +++VI +L D + +LD+ L RL+T +++L +P+P+K VHLNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLGKDPQPLLELDAEALQARLYTHYEDLAPDELPIPVKLVHLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYD 362
P E+ ++ GID ++CL +L ++RQ +R++ +++++ + +VDSQLYD
Sbjct: 309 APAKTLTAENAQKIGIDREQCLAHLNVIRQHPQIREKLVSVFSQEREFAKENNVDSQLYD 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR MD I T PE L L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 369 GFFSPADRAAMDIIRTTEPENLGNLDIKVADKRIEPLLFRYRARHYPHTLTDAEQRRWAA 428
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
H + R+ +E Y L++L E++ D K ++ ++Y Y++
Sbjct: 429 HCRDYFERN-LESYMLNLENLVHEHQADPKKMAILKSVYHYVE 470
>gi|260580789|ref|ZP_05848615.1| exonuclease I [Haemophilus influenzae RdAW]
gi|260092606|gb|EEW76543.1| exonuclease I [Haemophilus influenzae RdAW]
Length = 473
Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/463 (48%), Positives = 305/463 (65%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L AN IEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E++ LQ L E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFEASLQRLVEEHSDNSEKLSLLQQVYEY 467
>gi|315634266|ref|ZP_07889553.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
gi|315476856|gb|EFU67601.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
Length = 475
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 6/468 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEAV +TGIT
Sbjct: 9 FFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPVVLYCKQTNDYLPAPEAVLVTGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E +F+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW N
Sbjct: 69 PQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI+WP DDG SF L+ L ANGIEH NAHDA +DVYAT
Sbjct: 129 GNSRWDLLDLVRACYALRPNGIEWPLDDDGMPSFHLEKLTKANGIEHTNAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LI++K+PKLF+Y ++ R K ++ KLI+ MTPLVHVSGM G R NT LIAP+A
Sbjct: 189 IEMAKLIKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP K++VI C+L+ ++ + +L + L+T + L G++PVP+K +H+NKC I
Sbjct: 249 WHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLPVPLKLIHINKCSI 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L P ++ ER GI+ C +N L ++R + I+ + +S +V+++LY
Sbjct: 309 LAPEKTLLPQNAERLGINRALCEKNQQRLLASKDVRQKVMDIFQQDREFEASDNVETELY 368
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF+D D+ M ILRT PE+L+ NL F D R+P+L F YRAR+F TL+ E+ W
Sbjct: 369 NGFFSDADKNNM-AILRTLEPEKLAEHNLSFQDPRIPQLLFHYRARHFYRTLNRAEQIKW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++R+K L + + ++ LQ L+ + + DE K L+ +YEY +I
Sbjct: 428 QKYRRKKL-EAEVLRFEQSLQELATQNENDEEKLTLLQKVYEYGNKII 474
>gi|322514439|ref|ZP_08067481.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
gi|322119646|gb|EFX91708.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
Length = 515
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/420 (50%), Positives = 288/420 (68%), Gaps = 5/420 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGIT
Sbjct: 7 FFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGDPVMFYCKQTPDYLPSPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +GV E EF+ R H FS PNTCI+GYNNIR+DD +R F+RNF D Y +SW N
Sbjct: 67 PQQCNAEGVSEPEFAARTHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFVDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ ++ R K +++K+ID MTPLVHVSGMFG +R NTA IAP+A
Sbjct: 187 IAMAKLIKQKQPKLFQFFFENRGKKEIKKMIDTGEMTPLVHVSGMFGNARGNTAWIAPIA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP ++ V+ C+LSG + + +L L+T +EL + + PVP+K VH+N+CPI+
Sbjct: 247 WHPTNQNQVLCCDLSGYVSALLTDSAEELRTHLYTKKEELPENVAPVPLKGVHINRCPII 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R GID +RCLENL LL+ +L R++ I+ + + +S +V++ LY
Sbjct: 307 APAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEASANVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
DGFF+ D+ M ILRT P++L L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 367 DGFFSPADKNNM-AILRTLQPQELEHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
>gi|260914022|ref|ZP_05920495.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
gi|260631655|gb|EEX49833.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
Length = 476
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/464 (48%), Positives = 302/464 (65%), Gaps = 7/464 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGIT
Sbjct: 9 FFIYDYESFGVNPASDRPAQFAGIRTDIDFNIIGEPVMLYCKQTNDYLPSPEAVLVTGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW N
Sbjct: 69 PQECNEKGISEPEFAERILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W ++G SF+L+ L NGIEH NAHDA ADVYAT
Sbjct: 129 GNSRWDLLDLVRACYALRPEGINWAHDENGMPSFRLEKLTQVNGIEHSNAHDAMADVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF++ ++ R K ++ LID+ NMTPLVHVSGM G R NTA + P+A
Sbjct: 189 IAMAKLIKEKQPKLFQFFFENRGKKEIENLIDVANMTPLVHVSGMLGNYRGNTAWVVPLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP +++VI C+LS ++ + +L + L+T EL KG++PVP+K VH+NKCPI
Sbjct: 249 WHPINQNAVIVCDLSANLDDLLTKSAAELRQNLYTPKAELLEKGILPVPLKLVHINKCPI 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQL 360
L P E+ R GID + CL+NL L+ N+RD I+ S +V+++L
Sbjct: 309 LAPAKVLLPENALRLGIDREFCLQNLQRLKNSANIRDIVTDIFTNEDKVFEPSLNVETEL 368
Query: 361 YDGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF D+ M ILR P ++L+ L F D+R+PEL F YRAR+ TL+ E+
Sbjct: 369 YSGFFDFSDKNNM-AILRNLPVDKLAEHGLAFKDKRIPELLFHYRARHHFSTLTRAEQIK 427
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
W ++R K L +S + E++ LQ L E + K L+ +YEY
Sbjct: 428 WQKYRHKKLEQSAV-EFEQNLQRLIEENHNNPEKLELLKKVYEY 470
>gi|167855672|ref|ZP_02478429.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
gi|167853190|gb|EDS24447.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
Length = 516
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/471 (47%), Positives = 306/471 (64%), Gaps = 6/471 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG D A DRPAQFAG+R D + I +F+C+ +DYLP PEAV +TGIT
Sbjct: 6 FFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ + G+ E EF+ RIH FS PNTC++GYNNIR+DD +R F+RNF+D Y +SW N
Sbjct: 66 PQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI+W D+G SFKL++L ANGI H NAHDA ADVYAT
Sbjct: 126 GNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAMADVYAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF++ R K L ++ID+ MTPLVHVSGM G R NTA + P+A
Sbjct: 186 IAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAWVVPLA 245
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP +++VI C+LSG++ + S L +RL+T EL +GL VP+K VH+NKCPI
Sbjct: 246 WHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINKCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQDVDSQL 360
L P E+ R GID + CLENL LL+ Q +L R++ I ++ +S ++++ L
Sbjct: 306 LAPAKTLLSENATRLGIDRQACLENLKLLKSQKSLVREKVIDILSEERNYPASNNIETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF D+ M + PE+L+ L FSD R+ L F YRAR++ TL+ E+ W
Sbjct: 366 YDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPRIEPLLFHYRARHYSETLTRAEQVRW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY-LQWVIPK 470
++ + L ++ E ++ + LS +Y + K L+ L Y Q + PK
Sbjct: 426 QKYCYQQL-ETKAEAFEQAVDLLSAQYHDNSEKIKLLTDLTAYAAQLMQPK 475
>gi|269962181|ref|ZP_06176534.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
gi|269833012|gb|EEZ87118.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
Length = 427
Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/424 (49%), Positives = 290/424 (68%), Gaps = 2/424 (0%)
Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
+C+P DYLP PEA ITGITPQKA+++G+ E EF +IH S PNT +GYN+IRFD
Sbjct: 1 MYCRPPADYLPSPEAALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFD 60
Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
D +R YRNF D Y WSW NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+
Sbjct: 61 DEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEH 120
Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
L++ANGIEH NAHDA ADV AT+ + ++ +PKLF+Y Y RNK +L +L+DI NMTP
Sbjct: 121 LSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTP 180
Query: 223 LVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD 282
L+HVSGM G T+ I PVAWHP ++VI +L+ D + +L + +L +RL+T +
Sbjct: 181 LMHVSGMMGRECQYTSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRE 240
Query: 283 ELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342
EL L+PVP+K VHLNKCPIL P E+ E GID ++CL NL LLRQ +R++
Sbjct: 241 ELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLI 300
Query: 343 AIYN-KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
++++ + S DVD+QLYDGFF+ DR MD I T P L+ L++ F D+R+ L F
Sbjct: 301 SLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLF 360
Query: 402 RYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
RYRAR++ TL E+E++ W +H +++ S+IEEY L++L E++ DE K ++ ++Y
Sbjct: 361 RYRARHYAGTLDEQEQRRWAQHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVY 419
Query: 462 EYLQ 465
Y++
Sbjct: 420 RYVE 423
>gi|293389967|ref|ZP_06634301.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290950501|gb|EFE00620.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 475
Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/467 (46%), Positives = 306/467 (65%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEAV +TGIT
Sbjct: 9 FFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ +I Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW N
Sbjct: 69 PQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+WP D+G SF+L+ L ANGI H NAHDA +DVYAT
Sbjct: 129 GNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LI++K+PKLF+Y ++ R K ++ KLID MTPLVHVSGM G R NT LIA +A
Sbjct: 189 IEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNTTLIASLA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP K++VI C+L+ ++ +L + L+T + L G +PVP+K +H+NKCPI
Sbjct: 249 WHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLIHINKCPI 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
+ P ++ ER GID + C +N L++ ++R + I+++ +S +V+++LY
Sbjct: 309 VAPAKTLLPQNAERLGIDQELCAKNRQRLQEARDIRQKVMDIFHQEREFDASDNVETKLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D D+ M + PE+L+ NL F D R+PEL F YRAR+F TL+ E+ W
Sbjct: 369 NGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQIKWQ 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ +K L + +++ +LQ L+ +Y +E L+ +YEY +I
Sbjct: 429 KYCRKKLDAEAL-QFEQRLQELAEQYSNNEENLMLLQKVYEYGAQII 474
>gi|16273288|ref|NP_439529.1| exonuclease I [Haemophilus influenzae Rd KW20]
gi|1169569|sp|P45188|EX1_HAEIN RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|1574211|gb|AAC23023.1| exodeoxyribonuclease I (sbcB) [Haemophilus influenzae Rd KW20]
Length = 473
Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/463 (47%), Positives = 304/463 (65%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF + Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIEPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L AN IEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R+ L +S + E++ LQ L + + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAV-EFEASLQRLVEXHSDNSEKLSLLQQVYEY 467
>gi|261868004|ref|YP_003255926.1| exonuclease I [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413336|gb|ACX82707.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 475
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/467 (45%), Positives = 304/467 (65%), Gaps = 4/467 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEAV +TGIT
Sbjct: 9 FFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ +I Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW N
Sbjct: 69 PQECNEKGLWEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA PDGI+WP D+G SF+L+ L ANGI H +AHDA +DVYAT
Sbjct: 129 GNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDSAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LI+ K+PKLF+Y ++ R K ++ KLID M PLVHVSGM G R NT LIAP+
Sbjct: 189 IEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNTTLIAPLT 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP K++VI C+L+ D+ +L + L+T + L G +PVP+K +H+NKCPI
Sbjct: 249 WHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPI 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
+ P ++ ER GID + C +N L++ ++R + I+++ +S +V+++LY
Sbjct: 309 VAPAKTLLPQNAERLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D D+ M + PE+L+ NL F D R+PEL F YRAR+F TL+ E+ W
Sbjct: 369 NGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQIKWQ 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ +K L + +++ +LQ L+ +Y +E L+ +YEY +I
Sbjct: 429 KYCRKKLDAEAL-QFEQRLQELAEQYSNNEENLMLLQKVYEYGTKII 474
>gi|145636088|ref|ZP_01791758.1| exonuclease I [Haemophilus influenzae PittHH]
gi|145270610|gb|EDK10543.1| exonuclease I [Haemophilus influenzae PittHH]
Length = 440
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/431 (49%), Positives = 289/431 (67%), Gaps = 5/431 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+A
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP ++++I C+L+GD+ + +L L+T EL +G+ VP+K VH+NKCPI
Sbjct: 247 WHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLY 361
L P E R GID + CL+NL LR ++R++ I+N+ +S D V+++LY
Sbjct: 307 LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELY 366
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 367 NGFFSNADKNNM-AILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRS 431
++R+ L +S
Sbjct: 426 KKYRQNKLEKS 436
>gi|152979065|ref|YP_001344694.1| exonuclease I [Actinobacillus succinogenes 130Z]
gi|150840788|gb|ABR74759.1| Exodeoxyribonuclease I [Actinobacillus succinogenes 130Z]
Length = 471
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/463 (46%), Positives = 304/463 (65%), Gaps = 6/463 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGIT
Sbjct: 6 FFIYDYESFGINPATDRPAQFAGIRTDADFNVIGEPVMLYCKQTNDYLPSPEAVLVTGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ + FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 66 PQECNEKGLPEPEFAASVLAEFSRPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI+W DDG SF+L+ L ANGI H NAHDA +DVYAT
Sbjct: 126 GNSRWDLLDIVRACYALRPEGIEWAYDDDGMPSFRLERLTEANGIAHENAHDAMSDVYAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+ K+PKLF+Y ++ R K ++ LI++ +MTPLVHVSGM G R N L+APV
Sbjct: 186 IAMAKLIKRKQPKLFQYFFENRGKREIEHLINVADMTPLVHVSGMLGNYRGNCTLVAPVG 245
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
WHP +++VI C+LS ++ +L L+T +L +G +PVP+K VH+NKCPI
Sbjct: 246 WHPVNQNAVIVCDLSQNIDDLLTKSIEELRTALYTKKTDLAAQGQLPVPLKLVHINKCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L P + E+ ER GID + C ENL LRQ +R + + I+ + + S +V+ +LY
Sbjct: 306 LAPANTLLPENAERLGIDRQFCSENLQKLRQSFEVRSKIEEIFREEHRFEPSDNVEIELY 365
Query: 362 DGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF++ D+ + ILR P E+L+ L F D+R+P+L F YRAR+F TL+ E+ W
Sbjct: 366 SGFFSNNDKNNL-AILRQLPIEKLAEHGLTFEDKRIPDLIFHYRARHFFKTLTRTEQLQW 424
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++R++ L + +++ ++Q+L EY E K L++ +Y Y
Sbjct: 425 EKYRRRKLEKEAT-DFEQRMQNLVMEYGDFEDKLNLLHQVYAY 466
>gi|332288227|ref|YP_004419079.1| exonuclease I [Gallibacterium anatis UMN179]
gi|330431123|gb|AEC16182.1| exonuclease I [Gallibacterium anatis UMN179]
Length = 471
Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/462 (48%), Positives = 301/462 (65%), Gaps = 5/462 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG D A DRPAQFAG+R D+ + I V +CK +DYLP P AV +TGIT
Sbjct: 6 FFIYDYESFGVDPARDRPAQFAGIRTDKDFNIIGEPIVLYCKQTNDYLPHPAAVALTGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ + G+ E EF+ +I + FS PNTCI+GYNNIRFDD +R FYRNF D Y +S+
Sbjct: 66 PQLCNQQGISEPEFAAKILEEFSQPNTCIMGYNNIRFDDEMTRYTFYRNFIDPYAYSYSQ 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+RA YA P+GI W D+G SF+L+ L AN IEH +AHDA +DVYAT
Sbjct: 126 GNSRWDLLDVIRATYALRPEGINWVYDDEGMPSFRLELLTKANNIEHSHAHDAMSDVYAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LI++++PKLF+Y + +R+K ++ +LID NMTPLVHVSGM G RSN + + P+A
Sbjct: 186 IEMAKLIKQQQPKLFDYFFTHRSKKEIEELIDYVNMTPLVHVSGMLGNYRSNISWMVPLA 245
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT--SHDELKGLVPVPIKEVHLNKCPI 302
HP K++VI C+L+ D+ L +L + L+T + EL+G VP+K VH NKCPI
Sbjct: 246 PHPTNKNAVIFCDLAADIDDLLTLSVEELKQNLYTKKAELELQGKKSVPLKLVHCNKCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
L P + + ER GID ++CL NL L+ +R++ I+ + Y + DV++ LY
Sbjct: 306 LAPAKTLRPQDAERVGIDRQQCLTNLAKLQAMPEIREKVHQIFLEEYDNDYDDVETALYK 365
Query: 363 GFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
FF+ D+ + ILRT +PEQL+ L F D+R+PEL FRYRAR+F TLS E+ W
Sbjct: 366 VFFSYSDKNNL-AILRTLSPEQLANHGLTFQDKRIPELLFRYRARHFYKTLSRAEQIKWQ 424
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ L S E+ + + LS +Y DE K L+ LYEY
Sbjct: 425 KYCHAKLDASS-AEFIAEFEMLSAQYANDENKLLLLQNLYEY 465
>gi|251792518|ref|YP_003007244.1| exonuclease I [Aggregatibacter aphrophilus NJ8700]
gi|247533911|gb|ACS97157.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus NJ8700]
Length = 464
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/462 (45%), Positives = 303/462 (65%), Gaps = 6/462 (1%)
Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALR 70
+ FG + A DRPAQF G+R D + I + V +CK +DYLP PEAV +TGITPQ+
Sbjct: 4 KVFGVNPATDRPAQFGGIRTDANFNIIGESVVLYCKQTNDYLPAPEAVLVTGITPQECNE 63
Query: 71 DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
G+ E +F+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW NGNSRWD
Sbjct: 64 KGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWD 123
Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWL 190
LLD++RA YA PDG++WP D+G SF+L+ L ANGIEH NAHDA +DVYAT+ + L
Sbjct: 124 LLDLVRACYALRPDGVEWPLDDEGMPSFRLEKLTEANGIEHTNAHDAMSDVYATIEMAKL 183
Query: 191 IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYK 250
I++K+PKLF+Y ++ R K ++ KLI+ MTPLVHVSGM G R NT LIAP+AWHP K
Sbjct: 184 IKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPLAWHPTNK 243
Query: 251 DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPILMPIDY 308
++VI C+L+ ++ + +L + L+T + L G++ VP+K +H+NKCPI+ P
Sbjct: 244 NAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLLVPLKLIHINKCPIVAPEKT 303
Query: 309 CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDGFFAD 367
++ ER GID + C +N L ++R + I+ + +S +V+++LY+GFF+D
Sbjct: 304 LLSQNAERLGIDRELCAQNQQRLLASKDIRQKVMDIFQQDREFEASDNVETELYNGFFSD 363
Query: 368 VDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
D+ M ILRT PE+L+ NL F D R+P+L F YRAR+F TL+ E+ W ++ +K
Sbjct: 364 ADKNNM-AILRTLEPEKLAEHNLRFQDPRIPQLLFHYRARHFYRTLNRAEQIKWQKYCRK 422
Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L + I ++ LQ L+ + + +E L+ +YEY +I
Sbjct: 423 KLD-AEILRFEQSLQELAAQNEHNEENLTLLQKVYEYGNKII 463
>gi|88859960|ref|ZP_01134599.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
gi|88817954|gb|EAR27770.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
Length = 483
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/466 (45%), Positives = 296/466 (63%), Gaps = 8/466 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D+ETFG + DRP+QFAGVR D I + +C+PA DYLP P+A ITGITPQ
Sbjct: 16 HDFETFGANPQKDRPSQFAGVRTDFDLNIIGEPLIIYCQPAPDYLPHPQACLITGITPQH 75
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
AL+ G++EAEF +IHQ F+ PNTC+ GYN+IRFDD SR FYRNFYD Y W NGNS
Sbjct: 76 ALKHGMIEAEFIAKIHQEFAKPNTCVAGYNSIRFDDEVSRYAFYRNFYDPYAREWQNGNS 135
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YA P+GIQWP ++DG SF+L+DL ANGIEH AHDA +DV AT+AL
Sbjct: 136 RWDIIDLVRACYALRPEGIQWPLKEDGTPSFRLEDLTKANGIEHAAAHDALSDVTATIAL 195
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI++K+PKL+++ + R K + +L DI NM PLVH S AS+ T IAP+A+HP
Sbjct: 196 AKLIKDKQPKLYDFFFKLRFKKAVAELFDIYNMVPLVHTSSKIPASQGCTTWIAPMAFHP 255
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D R L + ++ RL+T EL + P+ +K VHLNKCPI+ P
Sbjct: 256 VNKNAVICFNLTHDPRPLLALSADEIRARLYTKRAELAENEQPIGLKLVHLNKCPIVAPA 315
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDGFF 365
E+ + GID ++CL NL +L+ LR++ ++ + S++ D QLY GF
Sbjct: 316 KTLLPENAAKIGIDREQCLANLAILKAHPELREKVAEVFQSENEFAGSENCDYQLYAGFT 375
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
++ D+ D I P+QL+TL L F D++ L FRYRARN+PHTL+ E + W ++ +
Sbjct: 376 SNADKHKFDIIRAAEPDQLATLGLDFEDKKFDTLLFRYRARNWPHTLTTAELEKWRKYCQ 435
Query: 426 KMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L +E+ L++L E +G+E ++ ALY Y Q
Sbjct: 436 NKLMYGEDSPAIDAQEFMMTLENLVHENEGNERNMTILKALYHYAQ 481
>gi|33152477|ref|NP_873830.1| exonuclease I [Haemophilus ducreyi 35000HP]
gi|33148700|gb|AAP96219.1| exonuclease I [Haemophilus ducreyi 35000HP]
Length = 513
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/473 (46%), Positives = 303/473 (64%), Gaps = 10/473 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYE+FG + A DRPAQFAG+R DR++ I +F+CK +DYLP EAV +TGI
Sbjct: 7 FFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQTNDYLPSAEAVMVTGIA 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ G+ E EF++RIH FS PNTCIIGYNNIR+DD +R F+RNFYD Y + W N
Sbjct: 67 PQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNNIRYDDEMTRYTFFRNFYDPYEYCWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P GI+WP + SFKL+ L AN I H NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPSGIEWPKNEKDEPSFKLEHLTKANAIAHQNAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LI++K+ KLF++ ++ R+K L KLID +TPLVHVSGM G R NTALI P+A
Sbjct: 187 IEIAKLIKQKQRKLFDFFFENRSKKALEKLIDPAELTPLVHVSGMLGNYRGNTALIVPLA 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++V+ C+LS D++ + + L +RL+T D L + PVP+K VHLNKCPIL
Sbjct: 247 WHPTNQNAVVVCDLSSDIQGLLNDTAEVLKQRLYTKRDALAEHESPVPLKLVHLNKCPIL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
P E+ R ID +CL NL L+ Q+ +R++ I+N + S +V++ LY
Sbjct: 307 APAKTLLAENAMRLAIDRSQCLLNLAKLQAQKAVVREKVIEIFNDERIFAPSNNVETTLY 366
Query: 362 DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
D FF++ D+ + ILRT PEQL+ L F+D+R+ L F YRAR+FP+TL+ E+ W
Sbjct: 367 DSFFSNGDKNNL-AILRTLKPEQLAEHGLKFADKRVEPLLFHYRARHFPNTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL----QWVIP 469
++ + + ++ E++ ++ +L Y K L+ L Y Q+ +P
Sbjct: 426 QKYCHQQID-AKTEQFSQEIANLFERYADHADKVKLLEDLTAYATQLSQYTLP 477
>gi|71892235|ref|YP_277968.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|71796341|gb|AAZ41092.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 500
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/481 (43%), Positives = 314/481 (65%), Gaps = 18/481 (3%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYETFG + ALDRPAQFAG+R + + IE ++FFC+ ++DYLPDP++V ITGI
Sbjct: 12 FFIYDYETFGINPALDRPAQFAGIRTNNTLKPIEKEKIFFCRLSNDYLPDPQSVLITGIA 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ LR G++E+EF+RRIHQ F +P TCI+GYNNI FDD +SRNIFYRNF+D Y W++
Sbjct: 72 PQDTLRHGLIESEFARRIHQLFCIPKTCILGYNNIHFDDEFSRNIFYRNFHDPYLWAYQR 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLL V+RA Y+ P+GI WP SF+L+DL AN I+H++AHDA +DVYAT
Sbjct: 132 GNSRWDLLHVLRACYSLCPNGITWPLNIQNKPSFRLKDLTQANAIKHLSAHDAMSDVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN-TALIAPV 243
L L LI+E +P+LF++L+D+R K QL+K+ID+ M PL+ + N IAP+
Sbjct: 192 LELTKLIKEAQPQLFQFLFDHRTKYQLQKIIDLDTMNPLIFIMNKINNKYKNFITYIAPI 251
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCPI 302
+ HP + +I C+L+G++ +L+ + ++L+++H + ++ +P++ + LN CPI
Sbjct: 252 SRHPINPNILIACDLNGNIDNLVNLNINTIYQKLYSNHITIYDILKKIPLRFIRLNACPI 311
Query: 303 LMPIDYCKKEHFE-----RWGIDHKRCLENLTLLRQQTN---LRDRFKAIY-------NK 347
L+PI++ +K + + +++ CL+NL +R N LR++ +Y N+
Sbjct: 312 LIPINFFEKNNINTTYTMQLSTNYRYCLKNLNFIRMHENSVYLRNKINTLYTIIGSYINQ 371
Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407
++ VDSQLY F + DR+I++ I RT ++L L D RL L F YRARN
Sbjct: 372 KNIYNNLHVDSQLYHRLFNNSDRKIIESIRRTHSKELKNLCTDHVDTRLKPLLFYYRARN 431
Query: 408 FPHTLSEKEKQDWLEHRK-KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
FP+TL+ +E++ WL ++K K+ + + Y +KL L YK ++ K L+++L +Y Q+
Sbjct: 432 FPNTLNYQEQKKWLNYKKNKLFNTDQSKSYNDKLNQLLSIYKYNDQKITLLHSLQKYYQY 491
Query: 467 V 467
+
Sbjct: 492 L 492
>gi|315126831|ref|YP_004068834.1| exonuclease I [Pseudoalteromonas sp. SM9913]
gi|315015345|gb|ADT68683.1| exonuclease I [Pseudoalteromonas sp. SM9913]
Length = 481
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/473 (46%), Positives = 302/473 (63%), Gaps = 10/473 (2%)
Query: 3 NHFVIY--DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
N IY DYET+G D+P+QFAGVR D I + +CKP DYLP PEA I
Sbjct: 7 NQATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLI 66
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y
Sbjct: 67 TGITPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYER 126
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +D
Sbjct: 127 EYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSD 186
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH S A++ T +
Sbjct: 187 VTATIALAKLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWV 246
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+++HP K++VI +L+ + +V DL+ QL KRL+T +L +G +PV +K VHLNK
Sbjct: 247 APMSFHPVNKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNK 306
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDS 358
CPIL P E+ R GID ++CL NL +L+ T LRD+ ++N+ S++ +VD
Sbjct: 307 CPILAPAKTLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDY 366
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ I PE L++L L F D + L FRYRARN+P TL+++E
Sbjct: 367 LLYDGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTLNQQELD 426
Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W ++ + L +++ L++L+ E+ E ++ ALY Y Q
Sbjct: 427 QWRQYCQSKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQ 479
>gi|157375752|ref|YP_001474352.1| exonuclease I [Shewanella sediminis HAW-EB3]
gi|157318126|gb|ABV37224.1| Exodeoxyribonuclease I [Shewanella sediminis HAW-EB3]
Length = 470
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/459 (45%), Positives = 288/459 (62%), Gaps = 5/459 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I F+CK A+DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPAKDRPSQFAGIRTDMDLNIIGDPVTFYCKVANDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ EAEF ++H FS PNTC+ GYN+IRFDD SR FYRNFYD Y W GNS
Sbjct: 72 ANLKGIPEAEFMAKVHDLFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYAREWQQGNS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI+WP ++DG+ SFKL+ L AN + H AHDA +DVYAT+ +
Sbjct: 132 RWDIIDLVRACYAFRPDGIEWPVKEDGSPSFKLEHLTQANDLSHEKAHDAMSDVYATIDM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI++K+PKLF+Y + R K ++ KLID+ NM PLVHVS + T +IAPVA H
Sbjct: 192 AKLIKQKQPKLFDYYFTLRRKQEVSKLIDVLNMQPLVHVSSKISSLHGCTTIIAPVAHHS 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K+++I NL+ D+ +L Q+ +R++T +L + +P+ +K++H+NKCP +
Sbjct: 252 TNKNAIICVNLAMDISPLIELSVDQIRERMYTRRADLAEDELPISVKQIHINKCPFIASA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
E+ ER ID E LL+Q LR++ A+++ Y S S D D QLY GFF
Sbjct: 312 KTLSDENAERLNIDKAFAREQFKLLKQHPELREKLVAVFDVEYESGSTDPDLQLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D++ M+ I T+P+ L+ L L F D RL E+ FRYR RN+P T E E W E +
Sbjct: 372 SSADKEKMEIIRHTSPQNLAALELEFDDSRLKEMLFRYRGRNYPETFDEMESMRWREFCQ 431
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
L +Y KL++L E +E K+ L+ AL YL
Sbjct: 432 ARLNDP---DYMLKLENLMNETAQNEDKQKLLTALCHYL 467
>gi|119469387|ref|ZP_01612326.1| exonuclease I [Alteromonadales bacterium TW-7]
gi|119447251|gb|EAW28520.1| exonuclease I [Alteromonadales bacterium TW-7]
Length = 481
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/473 (45%), Positives = 302/473 (63%), Gaps = 10/473 (2%)
Query: 3 NHFVIY--DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
N IY DYET+G D+P+QFAG+R D I + +CKP DYLP PEA I
Sbjct: 7 NQATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLI 66
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A++ G+VEAEF +IH FS PNTC+ GYN+IRFDD SR FYRNFYD Y
Sbjct: 67 TGITPQVAMKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYER 126
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +D
Sbjct: 127 EYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSD 186
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LI+EK+PKL+ + + RNK L L+D+ NMTPLVH S A++ T +
Sbjct: 187 VTATIALAKLIKEKQPKLYNFFFGLRNKKALGDLVDVFNMTPLVHTSSRIPATQGCTTWV 246
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+++HP K++VI +L+ +V DL+ +L KRL+T +L +G +PV +K VHLNK
Sbjct: 247 APMSFHPVNKNAVICFDLTQSPQVLLDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNK 306
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDS 358
CPIL P E+ R GID ++CL NL +L+ T+LRD+ ++N+ S++ +VD
Sbjct: 307 CPILAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDY 366
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ I P++L+ LNL F D++ L FRYRARN+P TL+++E
Sbjct: 367 LLYDGFTSHADKAKFAIIRDAKPDELAGLNLDFEDKKFNTLLFRYRARNWPETLNQQELD 426
Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W ++ + L +++ L++L+ E+ E ++ ALY Y Q
Sbjct: 427 QWRQYCQNKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQ 479
>gi|117921013|ref|YP_870205.1| exonuclease I [Shewanella sp. ANA-3]
gi|117613345|gb|ABK48799.1| Exodeoxyribonuclease I subunit C [Shewanella sp. ANA-3]
Length = 470
Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/462 (45%), Positives = 287/462 (62%), Gaps = 5/462 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y W NGN+
Sbjct: 72 ANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIAPVA HP
Sbjct: 192 AKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAPVAHHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPILMPI 306
K+++I NL+ D+ +LD Q+ R++T EL +P+P+K+VHLNKCP +
Sbjct: 252 SNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKCPFITSA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
ER ID E L+ LR++ ++ ++ D D LY GFF
Sbjct: 312 KILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q W R
Sbjct: 372 SPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQRW---RT 428
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
R ++Y KL++L + +GDE K+ L+ AL YL+ +
Sbjct: 429 FCQQRLSDQDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470
>gi|119775108|ref|YP_927848.1| exonuclease I [Shewanella amazonensis SB2B]
gi|119767608|gb|ABM00179.1| Exodeoxyribonuclease I subunit C [Shewanella amazonensis SB2B]
Length = 470
Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/460 (47%), Positives = 286/460 (62%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG A DRPAQFAGVR D I+ F+C+ + DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGASPAKDRPAQFAGVRTDLDLNIIDEPVTFYCRLSPDYLPAPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A R G+ E EF RI FS PNTC+ GYN++RFDD SR FYRNF D Y W GNS
Sbjct: 72 ANRQGLPETEFMGRIQAIFSRPNTCVAGYNSLRFDDEVSRYGFYRNFIDPYAREWQQGNS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YA P+GI WP ++DG+ SFKL+ L ANG+ H AHDA +DVYAT+AL
Sbjct: 132 RWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTAANGLGHDKAHDAMSDVYATIAL 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+EK+PKLF+Y + R K + + ID+ M PLVH+S A++ LIAPVA H
Sbjct: 192 ARLIKEKQPKLFDYYFRLRRKQAVAEQIDVLAMQPLVHISSKIPATQGCATLIAPVAHHM 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPILMPI 306
R K++VI NL+ D++ DLD L RL+T ++L +PVP+K++HLNKCP +
Sbjct: 252 RNKNAVICVNLAMDIQPLIDLDVDALRTRLYTKREDLANDELPVPVKQIHLNKCPFVANA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
+ ER GID E LL+Q +R++ A++ + S D D LY GFF
Sbjct: 312 KTLDDANAERLGIDKAFAREQYRLLKQHPEIREKLTALFEEEPQGMSNDPDYSLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ DR MD I T+PE L+ L L F D RLPE+ FRYRARN+P TLS E W E +
Sbjct: 372 SPADRAKMDIIRNTSPEHLAALELQFDDTRLPEMLFRYRARNYPLTLSYDESLRWREFCQ 431
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L +Y +L++L E DE K+ L+ AL +YLQ
Sbjct: 432 ARLNDP---DYVIRLENLLEETTKDEKKQKLLGALCQYLQ 468
>gi|71280482|ref|YP_268744.1| exonuclease I [Colwellia psychrerythraea 34H]
gi|71146222|gb|AAZ26695.1| exodeoxyribonuclease I [Colwellia psychrerythraea 34H]
Length = 487
Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/469 (43%), Positives = 304/469 (64%), Gaps = 11/469 (2%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYET+G + D+P+QFAG+R D I E+F+C P DYLP PEA +TGITPQK
Sbjct: 18 HDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTGITPQK 77
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A R+G+ EAEF+ RIH F+ PNTC+ GYN+IRFDD +R + YRNFYD Y W NGNS
Sbjct: 78 AQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREWQNGNS 137
Query: 128 RWDLLDVMRAIYAFSPDGIQWPS-RDDG--ATSFKLQDLALANGIEHVNAHDAKADVYAT 184
RWD++D++RA YA P+GI WP+ + DG SF+L+ L AN I H AHDA +DVYAT
Sbjct: 138 RWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAMSDVYAT 197
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI+EK+PKL++++++ +NKNQ++ LI+ MTP+VH S ++ T+ APV+
Sbjct: 198 IAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTSWFAPVS 257
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPIL 303
+HP K++VI +L+ D+ L S ++ RL+T +D+L +P+P+K +H+NKCP++
Sbjct: 258 YHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHVNKCPVI 317
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLYD 362
P E+ ER I CL+NL LLR+ LRD+ ++ + + D + LY
Sbjct: 318 APAKTLLPENAERLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDVDAEQALYG 377
Query: 363 G-FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
G FF+ D+ MD + +PEQL+ F D RL L FRYRARN+P+TLS +E+Q W
Sbjct: 378 GSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLSTEEQQKWQ 437
Query: 422 EHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
++ + L ++E+ K+++L+ E++ D+ K ++ ALYE+LQ
Sbjct: 438 QYCQNKLQYGGKGILSLDEFMMKIENLAHEHETDKAKMSVLKALYEFLQ 486
>gi|332535945|ref|ZP_08411647.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
gi|332034679|gb|EGI71232.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
Length = 481
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/473 (45%), Positives = 304/473 (64%), Gaps = 10/473 (2%)
Query: 3 NHFVIY--DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
N IY DYET+G D+P+QFAG+R D I + +CKP DYLP PEA I
Sbjct: 7 NQATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLI 66
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y
Sbjct: 67 TGITPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYER 126
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +D
Sbjct: 127 EYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSD 186
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH + A++ T+ +
Sbjct: 187 VTATIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTSWV 246
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+++HP K++VI +L+ + +V DL+ +L KRL+T +L + +PV +K VHLNK
Sbjct: 247 APMSFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEDDLPVGLKLVHLNK 306
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDS 358
CPIL P E+ R GID ++CL NL +L+ T+LRD+ ++N+ S++ +VD
Sbjct: 307 CPILAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDY 366
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ I P++L+ L L F D++ L FRYRARN+P TL+++E
Sbjct: 367 LLYDGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQELD 426
Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W ++ + L +++ L++L+ E+ E ++ ALY Y Q
Sbjct: 427 QWRQYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQ 479
>gi|153000207|ref|YP_001365888.1| exonuclease I [Shewanella baltica OS185]
gi|151364825|gb|ABS07825.1| Exodeoxyribonuclease I [Shewanella baltica OS185]
Length = 472
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/462 (45%), Positives = 289/462 (62%), Gaps = 9/462 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 14 HDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQL 73
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W NGNS
Sbjct: 74 ANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYVREWQNGNS 133
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 193
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PVA HP
Sbjct: 194 AKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPVAHHP 253
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP +
Sbjct: 254 TNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPFITSA 313
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
EH R GID E L+ LR++ ++ + ++ D D LY GFF
Sbjct: 314 KILSDEHAARLGIDKAFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYSGGFF 373
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W E
Sbjct: 374 SQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWRE--- 430
Query: 426 KMLTRSRI--EEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+SR+ ++Y KL++L + + DE K+ L+ AL YL+
Sbjct: 431 --FCQSRLADQDYVLKLENLLQDTQADETKQKLLAALCHYLR 470
>gi|217973824|ref|YP_002358575.1| exonuclease I [Shewanella baltica OS223]
gi|217498959|gb|ACK47152.1| Exodeoxyribonuclease I [Shewanella baltica OS223]
Length = 470
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/473 (45%), Positives = 293/473 (61%), Gaps = 13/473 (2%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
M+NH +DYETFG + A DRP+QFAG+R D I E F+CK DYLP PE
Sbjct: 1 MSNHSQPSIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQTPDYLPSPE 60
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
A+ ITGITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D
Sbjct: 61 AILITGITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFID 120
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
Y W NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHD
Sbjct: 121 PYAREWQNGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHD 180
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
A +DVYAT+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A
Sbjct: 181 AMSDVYATIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
T LI+PVA HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++
Sbjct: 241 TTLISPVAHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQI 300
Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
HLNKCP + EH R GID + E L+ LR++ ++ + ++ D
Sbjct: 301 HLNKCPFITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTD 360
Query: 356 VDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D LY GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L
Sbjct: 361 PDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDY 420
Query: 415 KEKQDWLEHRKKMLTRSRI--EEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+E Q W E +SR+ ++Y KL++L + + DE K+ L+ AL YL+
Sbjct: 421 EESQRWRE-----FCQSRLADQDYVLKLENLLQDTQADETKQKLLAALCHYLR 468
>gi|126173926|ref|YP_001050075.1| exonuclease I [Shewanella baltica OS155]
gi|125997131|gb|ABN61206.1| Exodeoxyribonuclease I subunit C [Shewanella baltica OS155]
Length = 472
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/462 (45%), Positives = 290/462 (62%), Gaps = 9/462 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 14 HDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQL 73
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W NGNS
Sbjct: 74 ANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 133
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 193
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PVA HP
Sbjct: 194 AKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPVAHHP 253
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP +
Sbjct: 254 TNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPFITSA 313
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
EH R GID + E L+ LR++ ++ + ++ D D LY GFF
Sbjct: 314 KILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYSGGFF 373
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W E
Sbjct: 374 SQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWRE--- 430
Query: 426 KMLTRSRI--EEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+SR+ ++Y KL++L + + DE K+ L+ AL YL+
Sbjct: 431 --FCQSRLADQDYVLKLENLLQDTQVDETKQKLLAALCHYLR 470
>gi|304409797|ref|ZP_07391417.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
gi|307304154|ref|ZP_07583907.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
gi|304352315|gb|EFM16713.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
gi|306913052|gb|EFN43475.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
Length = 472
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/460 (45%), Positives = 288/460 (62%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 14 HDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQL 73
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W NGNS
Sbjct: 74 ANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 133
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTHANGLSHEKAHDAMSDVYATIAM 193
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PVA HP
Sbjct: 194 AKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPVAHHP 253
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP +
Sbjct: 254 TNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPFITSA 313
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
EH R GID + E L+ LR++ ++ + ++ D D LY GFF
Sbjct: 314 KILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRTTIDPDLMLYSGGFF 373
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W E +
Sbjct: 374 SQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWREFCQ 433
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L ++Y KL++L + + DE K+ L+ AL YL+
Sbjct: 434 NRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLR 470
>gi|170726402|ref|YP_001760428.1| exonuclease I [Shewanella woodyi ATCC 51908]
gi|169811749|gb|ACA86333.1| Exodeoxyribonuclease I [Shewanella woodyi ATCC 51908]
Length = 470
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/461 (45%), Positives = 287/461 (62%), Gaps = 9/461 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I E F+CK A+DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPAKDRPSQFAGIRTDFDLNIIGEPETFYCKVANDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A GV EAEF ++H FS PNTC+ GYN+IRFDD SR FYRNFYD Y W GNS
Sbjct: 72 ANLKGVPEAEFMGKVHALFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYAREWQQGNS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF P+GI+WP ++DG+ SFKL+ L ANG+ H AHDA +DVYAT+ +
Sbjct: 132 RWDIIDLVRACYAFRPEGIEWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIDM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+EK+PKLF+Y ++ R K ++ KLID+ NM PL+HVS + ++IAPVA H
Sbjct: 192 AKLIKEKQPKLFDYFFNLRKKQEVSKLIDVLNMQPLIHVSSKISSLHGCASIIAPVAHHS 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPI 306
K+++I NL+ D+ +LD Q+ +R++T +L +P+ +K+VH+NKCP +
Sbjct: 252 SNKNAIICVNLAMDISPLIELDVEQIRERMYTRRADLAPDELPISVKQVHINKCPFIAST 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
E+ R ID E L+Q LR++ ++++ Y S S D D QLY GFF
Sbjct: 312 KILTDENAARLDIDKAFAREQYKRLKQHPELREKLVSVFDVEYESDSNDPDLQLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L L F D RL E+ FRYR RN+P + E W E
Sbjct: 372 SSADKAKMEMIRHTLPQNLAALELHFDDSRLKEMLFRYRGRNYPEFFDDSESMKWRE--- 428
Query: 426 KMLTRSRIE--EYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
+SR+ +Y KL++L E E K+ L+ AL YL
Sbjct: 429 --FCQSRLNDPDYMFKLENLVNETSQSEDKQKLLTALCHYL 467
>gi|114047972|ref|YP_738522.1| exonuclease I [Shewanella sp. MR-7]
gi|113889414|gb|ABI43465.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-7]
Length = 470
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/464 (45%), Positives = 289/464 (62%), Gaps = 9/464 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y W NGN+
Sbjct: 72 ANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIAPVA HP
Sbjct: 192 AKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAPVAHHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K+++I NL+ D+ +LD Q+ R++T EL + +P+P+K+VHLNKCP +
Sbjct: 252 SNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKCPFITSA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
ER ID E L+ LR++ ++ ++ D D LY GFF
Sbjct: 312 KILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q W
Sbjct: 372 SPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQRW----- 426
Query: 426 KMLTRSRI--EEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + R+ ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 427 RIFCQQRLSDQDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470
>gi|160874834|ref|YP_001554150.1| exonuclease I [Shewanella baltica OS195]
gi|160860356|gb|ABX48890.1| Exodeoxyribonuclease I [Shewanella baltica OS195]
gi|315267073|gb|ADT93926.1| Exodeoxyribonuclease I [Shewanella baltica OS678]
Length = 472
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/460 (45%), Positives = 287/460 (62%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 14 HDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGITPQL 73
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A GV E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W NGNS
Sbjct: 74 ANLKGVPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 133
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 134 RWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 193
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+ VA HP
Sbjct: 194 AKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISTVAHHP 253
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP +
Sbjct: 254 NNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPFITSA 313
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
EH R GID + E L+ LR++ ++ + ++ D D LY GFF
Sbjct: 314 KILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYSGGFF 373
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W E +
Sbjct: 374 SQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWREFCQ 433
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L ++Y KL++L + + DE K+ L+ AL YL+
Sbjct: 434 NRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLR 470
>gi|163752570|ref|ZP_02159753.1| exodeoxyribonuclease I [Shewanella benthica KT99]
gi|161327543|gb|EDP98744.1| exodeoxyribonuclease I [Shewanella benthica KT99]
Length = 470
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/466 (44%), Positives = 291/466 (62%), Gaps = 6/466 (1%)
Query: 2 TNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+NH + +DYETFG + + DRP+QFAG+R D + F+CK A DYLP PEA+ I
Sbjct: 5 SNHTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKLATDYLPSPEAILI 64
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ E EF ++++ FS PNTC+ GYN+IRFDD +R FYRNF D Y
Sbjct: 65 TGITPQLVNLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRYGFYRNFIDPYAR 124
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWD++D++RA YAF P+GI+WP ++DG SFKL+ L ANG+ H AHDA +D
Sbjct: 125 EWQKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSD 184
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + LI++K+PKLF+Y + R K ++ K +D+ NM PLVHVS A T LI
Sbjct: 185 VYATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMLPLVHVSSKISAEHGCTTLI 244
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
APVA H K+++I NL+ D+ +LD+ Q+ +R++T D+L +P+ +K++H+NK
Sbjct: 245 APVAHHSSNKNAIICVNLAMDISPLIELDAEQIRERMYTRRDDLADDELPISVKQIHINK 304
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CP + E +R ID E LL+Q LR++ A+++ + + SQD D Q
Sbjct: 305 CPFITSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNGSQDPDLQ 364
Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GFF D++ M+ I T P+ L+ L L F D+RL E+ FRYRARN+P TL E E
Sbjct: 365 LYSGGFFGSADKEKMEIIRHTLPQNLAALELNFDDQRLKEMLFRYRARNYPATLDESESM 424
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
W R +R EY +L++L + DE K+ L+ AL YL
Sbjct: 425 KW---RDFCQSRLNDPEYMMQLENLVNDTANDEDKQKLLTALCHYL 467
>gi|330720654|gb|EGG98904.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC2047]
Length = 478
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/447 (45%), Positives = 288/447 (64%), Gaps = 8/447 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YD+ETFG D DRP QFAG+R D Q+ I +VFFCKPADD LP PEA ITGIT
Sbjct: 3 FYWYDFETFGADPFRDRPCQFAGIRTDEQFNIIGDPDVFFCKPADDVLPHPEACLITGIT 62
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL++GV EAEF RIH+ F+ P TC+ GYN+IRFDD +RN YRNFYD Y W +
Sbjct: 63 PQQALKEGVSEAEFIARIHEQFAEPGTCVAGYNSIRFDDEVTRNALYRNFYDPYAREWQH 122
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD++D++R A P+GI WP +DG+ SFKL+ L ANGI H AHDA +DV+AT
Sbjct: 123 GNSRWDIIDMVRLTRALRPEGINWPEHEDGSPSFKLEQLTAANGISHEAAHDALSDVWAT 182
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L LI+ K+PKL++Y+Y +R+K + + +++ P++H+S MF A R A++ P+A
Sbjct: 183 IELAKLIKTKQPKLYDYVYKHRDKRLVDQQLNVVAQKPVLHISSMFPADRGCAAIVVPLA 242
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
K++V +LS D L + Q+A+R+FT +++ +G+ VPIK VH+NKCPI+
Sbjct: 243 RDVVNKNAVYVYDLSVDPEPLLRLSAEQIAERIFTRREDMPEGVERVPIKAVHINKCPIV 302
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD- 362
P++ E ER GID C NL ++ + ++ +A+++ + D D LY
Sbjct: 303 APVNVVSAEAAERLGIDLTACRANLEHIKAAAGIAEKVQAVFSSREFETPDDPDQALYSG 362
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DRQ+M+ + + PEQLS LPF D RLP++ FRYRARN+P TLS+ E+ W
Sbjct: 363 GFFSSHDRQLMEELRQMTPEQLSAAKLPFRDARLPDMLFRYRARNYPATLSDDERAQWQV 422
Query: 423 HRK------KMLTRSRIEEYKNKLQSL 443
R+ K+ +R ++ Y ++ L
Sbjct: 423 FRRSCFDDEKIGSRLTLDSYYQRIDEL 449
>gi|120599334|ref|YP_963908.1| exonuclease I [Shewanella sp. W3-18-1]
gi|120559427|gb|ABM25354.1| Exodeoxyribonuclease I subunit C [Shewanella sp. W3-18-1]
Length = 472
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/460 (46%), Positives = 280/460 (60%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 14 HDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITGITPQL 73
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W NGNS
Sbjct: 74 ANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 133
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP +DDG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 134 RWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 193
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+PVA HP
Sbjct: 194 AKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISPVAHHP 253
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKCP +
Sbjct: 254 TNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCPFITSA 313
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
R ID E LR LR++ ++ S++ D D LY GFF
Sbjct: 314 KILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLYSGGFF 373
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E W E +
Sbjct: 374 SSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRWREFCQ 433
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L ++Y KL++L DE K+ L+ AL YL+
Sbjct: 434 NRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLR 470
>gi|294141308|ref|YP_003557286.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
gi|293327777|dbj|BAJ02508.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
Length = 470
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/467 (44%), Positives = 294/467 (62%), Gaps = 6/467 (1%)
Query: 2 TNHFVI-YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+NH + +DYETFG + + DRP+QFAG+R D + F+CK A+DYLP PEA+ I
Sbjct: 5 SNHTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKVANDYLPSPEAILI 64
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A G+ E EF ++++ FS PNTC+ GYN+IRFDD +R FYRNF D Y
Sbjct: 65 TGITPQLANLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRFGFYRNFIDPYAR 124
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWD++D++RA YAF P+GI+WP ++DG SFKL+ L ANG+ H AHDA +D
Sbjct: 125 EWQKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSD 184
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + LI++K+PKLF+Y + R K ++ K +D+ NM PLVHVS A T LI
Sbjct: 185 VYATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMQPLVHVSSKISAEHGCTTLI 244
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNK 299
APVA H K+++I NL+ D+ +LD+ Q+ R++T D+L +P+ +K++H+NK
Sbjct: 245 APVAHHSTNKNAIICVNLAMDISPLIELDAEQIRDRMYTRRDDLAADELPISVKQIHINK 304
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CP + E +R ID E LL+Q LR++ A+++ + ++SQD D Q
Sbjct: 305 CPFVTSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNASQDPDFQ 364
Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GFF+ D++ M+ I T P+ L+ L F D+RL E+ FRYRARN+P TL E E
Sbjct: 365 LYSGGFFSSADKEKMEIIRHTLPQNLAALEFNFDDQRLKEMLFRYRARNYPATLDESESM 424
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W R TR EY +L++L + +E K+ L+ AL YL+
Sbjct: 425 KW---RDFCQTRLDDPEYMIRLENLVNDTTDNEDKQKLLTALCHYLR 468
>gi|146292669|ref|YP_001183093.1| exonuclease I [Shewanella putrefaciens CN-32]
gi|145564359|gb|ABP75294.1| Exodeoxyribonuclease I subunit C [Shewanella putrefaciens CN-32]
Length = 470
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/460 (46%), Positives = 280/460 (60%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W NGNS
Sbjct: 72 ANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP +DDG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 132 RWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+PVA HP
Sbjct: 192 AKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISPVAHHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKCP +
Sbjct: 252 TNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCPFITSA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
R ID E LR LR++ ++ S++ D D LY GFF
Sbjct: 312 KILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E W E +
Sbjct: 372 SSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRWREFCQ 431
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L ++Y KL++L DE K+ L+ AL YL+
Sbjct: 432 NRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLR 468
>gi|113970745|ref|YP_734538.1| exonuclease I [Shewanella sp. MR-4]
gi|113885429|gb|ABI39481.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-4]
Length = 470
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/464 (44%), Positives = 288/464 (62%), Gaps = 9/464 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y W NGN+
Sbjct: 72 ANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIAPV HP
Sbjct: 192 AKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAPVTHHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K+++I NL+ D+ +LD Q+ R++T EL + +P+P+K+VHLNKCP +
Sbjct: 252 SNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKCPFITSA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
ER ID E L+ LR++ ++ ++ D D LY GFF
Sbjct: 312 KILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q W
Sbjct: 372 SPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQRW----- 426
Query: 426 KMLTRSRI--EEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + R+ ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 427 RIFCQQRLSDQDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470
>gi|77360198|ref|YP_339773.1| exonuclease I [Pseudoalteromonas haloplanktis TAC125]
gi|76875109|emb|CAI86330.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis TAC125]
Length = 481
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/473 (45%), Positives = 300/473 (63%), Gaps = 10/473 (2%)
Query: 3 NHFVIY--DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
N IY DYET+G D+P+QFAGVR D I + +CKP DYLP PEA I
Sbjct: 7 NQATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLI 66
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y
Sbjct: 67 TGITPQVAMKKGLVEAEFIAKIHAQFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYER 126
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +D
Sbjct: 127 EYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSD 186
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LI++K+PKL+ + + R K L +L+D+ NMTPLVH S A++ T+ +
Sbjct: 187 VTATIALAKLIKDKQPKLYNFFFSLRGKKALAELVDVFNMTPLVHTSSRIPATQGCTSWV 246
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+++HP K++VI +L+ +V DL QL KRL+T +L + +PV +K VHLNK
Sbjct: 247 APMSFHPVNKNAVICFDLTQSPQVLIDLSVEQLRKRLYTKRIDLAEDELPVGLKLVHLNK 306
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDS 358
CPIL P E+ R GID ++CL+NL +L+ + LRD+ ++N+ S++ +VD
Sbjct: 307 CPILAPAKTLLPENAARLGIDREQCLKNLAVLKANSELRDKVTEVFNEQGDYSATTNVDY 366
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ I PE L+ L L F +++ L FRYRARN+P TL+++E
Sbjct: 367 LLYDGFTSHADKAKFAIIRDAKPEDLADLKLDFENKKFNTLLFRYRARNWPQTLNQQELD 426
Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W ++ + L +++ L++L+ E+ E ++ ALY Y Q
Sbjct: 427 QWRQYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQ 479
>gi|308049114|ref|YP_003912680.1| exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
gi|307631304|gb|ADN75606.1| Exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
Length = 470
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/462 (45%), Positives = 293/462 (63%), Gaps = 7/462 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYET+G DVA DRPAQFAG+R D IE ++C+ DYLP PEA+ +TGITPQK
Sbjct: 10 HDYETWGADVARDRPAQFAGIRTDLDLNIIEEPVEYYCRLPADYLPKPEAMLVTGITPQK 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A R G VEA+F R+H+ + PNTC +GYN+IRFDD +R YRNF+D Y W NGNS
Sbjct: 70 ANRLGEVEAQFIARVHEQMARPNTCTVGYNSIRFDDEITRYALYRNFFDPYAREWQNGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YA P+GI WP R+DGA SFKL+ L ANGI H +AHDA +DV AT+AL
Sbjct: 130 RWDIIDLVRACYALRPEGIVWPEREDGAPSFKLEHLTAANGIGHDSAHDAVSDVKATIAL 189
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+ +PKL+E+ + RNK IDI + PL+HVS F AS+ +L+ P+AWHP
Sbjct: 190 AKLIKTTQPKLYEWAFRLRNKRFAASQIDILALKPLLHVSSRFPASQGCASLVLPMAWHP 249
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLNKCPILMPI 306
K++V +L+ D + D L +L+ + D +G VP+K VH+NK P + P
Sbjct: 250 ENKNAVACVDLAMDPTPLLEWDIETLKAKLYQKAVDRTEGEPRVPVKLVHMNKSPFIAPA 309
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY--NKPYTSSSQDVDSQLYDG 363
+ + ER G+D C E+ LLRQ +R++ ++ + P + D QLY G
Sbjct: 310 SSLEDANAERLGLDKAACREHYKLLRQHHAEVREKLHGLFSDDAPPQREPDNPDVQLYGG 369
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF++ DR M+ + TAPE L+ L F D RLP+LFFRYRARN+P+TLSE E++ W++H
Sbjct: 370 FFSEADRAQMELVRSTAPEHLAALEPQFVDPRLPKLFFRYRARNYPNTLSEAEQRRWVQH 429
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
++ L + +Y + L+ L ++ DE K L+ AL YLQ
Sbjct: 430 CQQSLADA---DYVHNLEQLFEQHSSDEEKMKLLTALGHYLQ 468
>gi|83647678|ref|YP_436113.1| exonuclease I [Hahella chejuensis KCTC 2396]
gi|83635721|gb|ABC31688.1| Exonuclease I [Hahella chejuensis KCTC 2396]
Length = 483
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/480 (45%), Positives = 294/480 (61%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F YD+ET+G D DRP+QFAGVR D IE V +C PA+D LP PEA I
Sbjct: 1 MADTFYWYDFETWGADPRRDRPSQFAGVRTDLDLNPIEKPLVMYCMPAEDVLPQPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL +GV EAEF R IH+ FS P TC++GYN+IRFDD +RN YRNFYD Y
Sbjct: 61 TGITPQKALSEGVSEAEFIRLIHEQFSRPGTCVVGYNSIRFDDEVTRNTLYRNFYDPYSR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA PDGI WP +G SF+L++L ANG+ H AHDA +D
Sbjct: 121 EWRNGNSRWDVIDMVRLTYAMRPDGINWPMNAEGVPSFRLEELTKANGVTHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+A+ LI+ +PKL++Y+ +RNK L L+DI+ M PL HVS F A+ A++
Sbjct: 181 VYATIAVARLIKTAQPKLYDYVLGHRNKKVLEGLVDIERMKPLFHVSSKFPAALGCCAMV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A HP + VI +L D + L ++ +R+FTS+++L +G +P+K VHLNK
Sbjct: 241 APIARHPTNPNGVIVYDLRADPSTWTHLPVEKIRERIFTSNEDLPEGAERIPLKVVHLNK 300
Query: 300 CPILMPIDYCKKEHFER---WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
CPIL+ K ER + +D + +L LRQ N++ R ++N+P S D
Sbjct: 301 CPILVESKILKTMDPERLRGFQLDGDKLRSHLQALRQAENIQQRVAEVFNEPMDDSETDP 360
Query: 357 DSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D LY GFF++ DR++M I +PE L L LPF D RL E+ FRYRARNFP TL+E+
Sbjct: 361 DLMLYSGGFFSNNDRELMTFIHEQSPEVLGELELPFEDPRLQEMLFRYRARNFPGTLNEE 420
Query: 416 EKQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E + W +R L + Y KL+ L+ + ++ L+ Y + +IP
Sbjct: 421 EMEKWERYRYHRLAGESSGASISFQAYFKKLEQLAANPDITPFQLSILQDLHLYGESIIP 480
>gi|127512540|ref|YP_001093737.1| exonuclease I [Shewanella loihica PV-4]
gi|126637835|gb|ABO23478.1| Exodeoxyribonuclease I subunit C [Shewanella loihica PV-4]
Length = 482
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/461 (44%), Positives = 292/461 (63%), Gaps = 9/461 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I F+CK A DYLP PEA+ ITGITPQ
Sbjct: 24 HDYETFGANPAKDRPSQFAGIRTDMDLNIISEPVTFYCKQASDYLPSPEAILITGITPQL 83
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ EAEF RI+ FS PNTC+ GYN++RFDD +R FYRNF+D Y W NGNS
Sbjct: 84 ANLKGMPEAEFMARINSEFSQPNTCVAGYNSLRFDDEVTRYGFYRNFFDPYAREWQNGNS 143
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YA P+GI WP ++DG+ SFKL+ L AN + H AHDA +DVYAT+A+
Sbjct: 144 RWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTQANNLSHDKAHDAMSDVYATIAM 203
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+E++PKLF+Y ++ R KN++ K ID+ NM PL+HVS A T LIAPVA H
Sbjct: 204 AKLIKERQPKLFDYYFNLRKKNEVSKQIDVLNMQPLIHVSSKISALHGCTTLIAPVAHHS 263
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCPILMPI 306
K+++I NL+ D+ +L + ++ +R++T +L +P+ +K++H+NKCP +
Sbjct: 264 TNKNAIICVNLAMDVTPLIELSADEIRERMYTPRVDLASDELPIGLKQLHINKCPFIATA 323
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
+ +R ID + LRQ +R++ A+++ + + D D QLY GFF
Sbjct: 324 KTLTDGNAQRLEIDKEFARAQYKRLRQHPEIREKLVAVFDTEHGNEISDPDLQLYSGGFF 383
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I TAP+ L+ L L F D RLPE+ FRYRARN+P TL + E+Q W
Sbjct: 384 SHADKSKMEIIRHTAPQHLAALELDFDDERLPEMLFRYRARNYPETLDDTEQQRW----- 438
Query: 426 KMLTRSRIE--EYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
+ +SR+ +Y KL++L + + DE K+ L+ AL YL
Sbjct: 439 RTFCQSRLNDPDYMIKLETLVNDTEADEEKQKLLTALCHYL 479
>gi|24374325|ref|NP_718368.1| exonuclease I [Shewanella oneidensis MR-1]
gi|24348874|gb|AAN55812.1|AE015718_4 exodeoxyribonuclease I [Shewanella oneidensis MR-1]
Length = 470
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/462 (45%), Positives = 283/462 (61%), Gaps = 5/462 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RIH FS NTC+ GYN++RFDD +R FYRNF D Y W NGN+
Sbjct: 72 ANLKGLPETEFMGRIHTLFSQANTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNT 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 132 RWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A T LIAPVA HP
Sbjct: 192 AKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISAMHGCTTLIAPVAHHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPI 306
K+++I NL+ D+ +LD Q+ R++T EL +P+P+K+VHLNKCP +
Sbjct: 252 SNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDELPIPVKQVHLNKCPFITSA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
ER ID L+ LR++ ++ +++ D D LY GFF
Sbjct: 312 KILDDAQAERLSIDKAFARGQYKRLKAHPELREKLAQLFEHDGEATTTDPDLMLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L ++E W R
Sbjct: 372 SPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLDDQESHRW---RT 428
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
R ++Y KL++L + +GDE K+ L+ AL YL+ +
Sbjct: 429 FCQQRLADQDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470
>gi|319425973|gb|ADV54047.1| Exodeoxyribonuclease I [Shewanella putrefaciens 200]
Length = 470
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/460 (45%), Positives = 279/460 (60%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W NGNS
Sbjct: 72 ANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQNGNS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI W +DDG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 132 RWDIIDLVRACYAFRPDGINWSLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVYATIAM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+PVA HP
Sbjct: 192 AKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISPVAHHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKCP +
Sbjct: 252 TNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCPFITSA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
R ID E LR LR++ ++ S++ D D LY GFF
Sbjct: 312 KILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E W E +
Sbjct: 372 SSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRWREFCQ 431
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L ++Y KL++L DE K+ L+ AL YL+
Sbjct: 432 NRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLR 468
>gi|145641395|ref|ZP_01796974.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
gi|145273938|gb|EDK13805.1| exodeoxyribonuclease I [Haemophilus influenzae 22.4-21]
Length = 430
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/426 (47%), Positives = 284/426 (66%), Gaps = 6/426 (1%)
Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
+F+CK +DYLP PEAV ITGI PQ+ G+ E EF+ +I FS PNTC++GYNNIR+
Sbjct: 1 MFYCKQTNDYLPAPEAVMITGIMPQECNEKGLSEPEFAAKILAEFSQPNTCVMGYNNIRY 60
Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
DD +R FYRNF D Y +SW NGNSRWDLLD++RA YA P+GI W DDG SF+L+
Sbjct: 61 DDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLE 120
Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
L ANGIEH NAHDA ADVYAT+A+ LI+EK+PKLF+Y ++ R K ++ KL+D M
Sbjct: 121 KLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGVMA 180
Query: 222 PLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSH 281
PLVHVSGM G R N +AP+AWHP ++++I C+L+GD+ + +L L+T
Sbjct: 181 PLVHVSGMLGNYRGNCTWVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRANLYTKK 240
Query: 282 DEL--KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
EL + + PVP+K VH+NKCPIL P E R GID + CL+NL LR ++R+
Sbjct: 241 SELEERSVPPVPLKLVHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIRE 300
Query: 340 RFKAIYNKPYTSSSQD-VDSQLYDGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLP 397
+ I+N+ +S D V+++LY+GFF++ D+ M ILR+ P E+L+ L F D+R+P
Sbjct: 301 KVTDIFNEERQFASNDNVETELYNGFFSNADKNNMS-ILRSLPAEKLAEHGLAFEDKRIP 359
Query: 398 ELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLI 457
EL F YRAR+F TL+ E+ W ++R+ L +S + ++++ LQ L+ E+ + K L+
Sbjct: 360 ELLFHYRARHFYKTLTRAEQIKWQKYRQNKLEKSAV-DFESSLQRLAEEHSDNPEKLSLL 418
Query: 458 NALYEY 463
+YEY
Sbjct: 419 QQVYEY 424
>gi|254449147|ref|ZP_05062598.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
gi|198261261|gb|EDY85555.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
Length = 474
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/473 (42%), Positives = 298/473 (63%), Gaps = 6/473 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ F YD ETFG D R AQFAG R D I V +C+P+ D+LPDPEA I
Sbjct: 1 MSQTFYWYDLETFGTDPKTTRIAQFAGQRTDADLNPIGDPLVIYCQPSPDFLPDPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ E+EF +RIH+ FS PNTC++GYN++RFDD + R FYRNF D Y
Sbjct: 61 TGITPQVAAREGLPESEFIQRIHREFSQPNTCVLGYNSLRFDDEFMRYGFYRNFIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG SRWDL+DV+R A P+GI+WP +DG S KL+DL ANG+ H AHDA +D
Sbjct: 121 EWQNGCSRWDLIDVVRLTRALRPEGIEWPFHEDGTPSNKLEDLTQANGLVHSKAHDAYSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
+ AT+A+ I+EK+PKL+++ R+K +L + + P+VH+SGM+G R++TA++
Sbjct: 181 IEATIAVAKRIKEKQPKLWQFCLHNRDKRKLAGQLKVAAKEPVVHISGMYGNERASTAIV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
PVA HP K+ +I +L+ D LDS +A+R+FT ++L +P+K VHLNKC
Sbjct: 241 VPVARHPSNKNGIIVYDLAHDPAELIALDSAAIAERVFTRREDLGDKERLPLKTVHLNKC 300
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P++ P+ +E +R GID + + + L+ +L R +A + + D D L
Sbjct: 301 PVIAPLSTLSEEAAQRLGIDIEEQVARIETLKPIDDLEQRVQAAFGQQQFDPITDPDQSL 360
Query: 361 Y-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GF D D+ +M +I +PEQLS L+LPF D+RLPEL FR+RARN+P +L E+Q
Sbjct: 361 YGGGFIGDSDKALMRQIHSASPEQLSNLDLPFQDKRLPELLFRFRARNYPMSLDSDEQQR 420
Query: 420 WLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W E ++ + + +++++NKL +L+ EY+ D+ K ++ L +Y++ +
Sbjct: 421 WAELCREHIHDGKSGYLNLDQFQNKLMALAQEYEHDDSKLHVLKQLADYVEHI 473
>gi|212635816|ref|YP_002312341.1| exonuclease I [Shewanella piezotolerans WP3]
gi|212557300|gb|ACJ29754.1| Exodeoxyribonuclease I [Shewanella piezotolerans WP3]
Length = 470
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/467 (44%), Positives = 291/467 (62%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N +DYETFG + A DRP+QFAGVR D + I+ F+CK A+DYLP PEA+ ITG
Sbjct: 7 NTLFWHDYETFGANPAKDRPSQFAGVRTDMELNIIDEPVTFYCKLANDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A + G EAEF ++HQ FS NTC++GYN+IRFDD SR FYRNF+D Y W
Sbjct: 67 ITPQLANQKGTPEAEFMAKVHQQFSQENTCVVGYNSIRFDDEVSRYGFYRNFFDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YAF PDGI WP ++DG+ SFKL+ L +ANG+ H AHDA +DVY
Sbjct: 127 QNGNSRWDIIDLVRACYAFRPDGINWPQKEDGSPSFKLEQLTVANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LI+ +PKLF+Y + R K ++ KLID+ M PLVHVS A T LIAP
Sbjct: 187 ATIGMAKLIKSVQPKLFDYYFSLRKKQEVSKLIDVLAMKPLVHVSSKISALNGCTTLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+A+H K++VI NL+ D+ +L + Q+ +R++T ++L + +P+ +K++H+NK P
Sbjct: 247 LAYHSTNKNAVICVNLAMDVTPLIELTAEQIRERMYTRREDLAEDELPIGLKQIHINKSP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
L ++ R ID E LR +R++ A+++ D D QLY
Sbjct: 307 FLAGAKTLTDDNAARLDIDKAFAREQYKKLRLHPEIREKLVAVFDLQSDREIADPDLQLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P L+ L L F D RLPE+ FRYRARN+P TL++ E W
Sbjct: 367 SGGFFSQADKAKMEMIRNTKPMNLAALELTFDDERLPEMLFRYRARNYPETLNDSELLRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L +Y +L+++ E + +E K+ L+ AL YL+ +
Sbjct: 427 REFCQPRLNDP---DYMIRLENIIEETEQNESKQKLLQALCHYLRSI 470
>gi|114562814|ref|YP_750327.1| exonuclease I [Shewanella frigidimarina NCIMB 400]
gi|114334107|gb|ABI71489.1| Exodeoxyribonuclease I subunit C [Shewanella frigidimarina NCIMB
400]
Length = 473
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/461 (45%), Positives = 290/461 (62%), Gaps = 6/461 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + + DRP+QFAG+R D + I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 14 HDYETFGANPSKDRPSQFAGIRTDLELNIIGEPETFYCKLAPDYLPSPEAILITGITPQL 73
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A GV EAEF +RI+ FS PNTC++GYN++RFDD SR FYRNF D Y W NGNS
Sbjct: 74 ANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFIDPYGREWQNGNS 133
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 134 RWDIIDLVRACYAFRPDGINWPKKEDGSPSFKLELLTQANGLSHEKAHDAMSDVYATIAM 193
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI++ PKL+EY ++ R K + ID+ M PLVHVS A + T LIAPVA+HP
Sbjct: 194 AKLIKQTHPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQGCTTLIAPVAYHP 253
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ +L + ++ R++TS L + + +P+K++HLNKCP +
Sbjct: 254 TNKNAVICINLAMDISPLLELSAQEINDRMYTSRQNLAENELAIPLKQIHLNKCPFIGSP 313
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLYD-GF 364
E E+ D E L+ LR++ ++ + + D D LY GF
Sbjct: 314 KLLDDEVAEKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKAITDPDLMLYSGGF 373
Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHR 424
F+ D+ +D I TAP L+ L L F D R+ E+ FR+RARN+P TLS+ E + W +
Sbjct: 374 FSHADKTKIDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPETLSDSEARKWRDFC 433
Query: 425 KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
++ L+ + +Y KL++L E +E K+ L+ ALY+YLQ
Sbjct: 434 QQRLSDA---DYVIKLENLVEETSENEHKQKLLKALYQYLQ 471
>gi|311695266|gb|ADP98139.1| exonuclease I [marine bacterium HP15]
Length = 481
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/479 (43%), Positives = 292/479 (60%), Gaps = 10/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL DG EAEF +I++ FS P TC++GYN++RFDD +R+ YRN D Y
Sbjct: 61 TGITPQKALEDGFPEAEFIAQINEAFSQPGTCVVGYNSLRFDDEVTRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI WP ++DG+ SFKL++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFKLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLF+++ ++K+ R ++D M P+ H+S + ASR AL+
Sbjct: 181 VEATIAMAKLIKEKQPKLFDFVLQNKDKHSARAMLDTAAMKPVFHISAKYPASRGCCALV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
APVA HP K+ VI +L D + + Q+ +R+FTS EL +G+ P+K V LNK
Sbjct: 241 APVAEHPSNKNLVIVYDLREDPTELINASAEQIRERVFTSQAELGEGVSRFPLKGVQLNK 300
Query: 300 CPILMP---IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
CP+L P + E E +D NL +LR+ +L R +++P+ S D
Sbjct: 301 CPVLAPANMLSTLSPERLEELALDGDTLRANLAMLRKAPDLPSRIAEAFDQPHESDLTDP 360
Query: 357 DSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D QLY GF + DR+ ++ +L E L L + F D RL EL FRYRARN+P +L +
Sbjct: 361 DEQLYAGGFISKADREKLNWVLEQPVETLGELEVTFEDDRLQELLFRYRARNYPGSLVGE 420
Query: 416 EKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E + W E R + L + +E + +LQ L+ + + K ++ L+ Y + +IP
Sbjct: 421 EMERWEEFRSQRLMHPKKGWRSLEAFAQELQRLAADPELTPQKRHILEDLHLYGESLIP 479
>gi|109898489|ref|YP_661744.1| exodeoxyribonuclease I [Pseudoalteromonas atlantica T6c]
gi|109700770|gb|ABG40690.1| Exodeoxyribonuclease I subunit C [Pseudoalteromonas atlantica T6c]
Length = 476
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 291/466 (62%), Gaps = 8/466 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYET+G + D QFAG+R D I + F + +DYLP+P+A ITGITPQ
Sbjct: 9 HDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPNPQACLITGITPQH 68
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+LRDG+VE +F ++IHQ FS P TC+ GYNNIRFDD +R YRNFYD Y W NGNS
Sbjct: 69 SLRDGMVEPDFIQKIHQEFSAPETCVAGYNNIRFDDEVTRYTLYRNFYDPYGREWRNGNS 128
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++DV+RA YA P+GI+WP +DDG+ SFKL+DL+ AN IEH AHDA +DV+AT+ +
Sbjct: 129 RWDIIDVVRACYALRPEGIEWPLKDDGSPSFKLEDLSKANNIEHAAAHDAMSDVHATIGM 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L++ +PKL++YL++ R K + L DI TPLVH+S A IAPVA HP
Sbjct: 189 AKLVKTAQPKLYDYLFNLRFKKNVIALFDINAHTPLVHISSKLPAINGCCTWIAPVAQHP 248
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++ I NL+ D++ DL ++ ++L+T + L +G +PIK +H+NK P++ P
Sbjct: 249 TNKNAFIVVNLALDIQPLIDLSVDEIIEKLYTPSNMLEEGEQRLPIKLIHVNKSPVIAPA 308
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG-FF 365
+ + R GI+ + CL NL +L+Q L + A+++ + QD D LY G FF
Sbjct: 309 KTLDESNAARLGINREVCLSNLKVLKQHPELVAKLIAVHSTTRDNKEQDADHALYSGAFF 368
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ DR +MD++L ++ EQL+ L LPF D RL L F Y+ RNFP +L+E+E Q W HRK
Sbjct: 369 SPKDRALMDQVLHSSTEQLADLTLPFEDPRLDNLLFYYKGRNFPTSLNEQELQRWQNHRK 428
Query: 426 KML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L + + +Y L+ LS +Y+ + K ++ ALY Y +
Sbjct: 429 FRLLDDTSPSSITMTDYVQTLELLSEQYQSNNDKLAILKALYTYAE 474
>gi|332306455|ref|YP_004434306.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332173784|gb|AEE23038.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 476
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/466 (43%), Positives = 290/466 (62%), Gaps = 8/466 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYET+G + D QFAG+R D I + F + +DYLP P+A ITGITPQ
Sbjct: 9 HDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACLITGITPQH 68
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+LRDG++E EF +IH FS TC+ GYNNIRFDD +R YRNFYD Y W NGNS
Sbjct: 69 SLRDGMIEPEFIEKIHHEFSQAETCVAGYNNIRFDDEVTRYTLYRNFYDPYEREWRNGNS 128
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++DV+RA YA PDGI+WP ++DG+ SFKL+DL+ AN IEH AHDA +DVYAT+ +
Sbjct: 129 RWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIEHSAAHDAMSDVYATIGV 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L++ +PKL++YL++ R K + LID Q TPLVH+S A +AP+A HP
Sbjct: 189 AKLVKTAQPKLYDYLFNLRLKKNVIALIDTQAHTPLVHISSKLPAINGCCTWVAPIAQHP 248
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
K++ I NLS D++ L ++ ++L+T+ + L +G +PIK VH+NK P+L P
Sbjct: 249 TNKNAFIMLNLSLDIQPLLALSVEEIIQKLYTASNMLEEGEQRLPIKLVHVNKSPVLAPA 308
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
+E+ R GID + CL+NL LL+Q L ++ +++ Q+ D LY GFF
Sbjct: 309 KTLNEENAARLGIDRQACLQNLQLLKQHPELVEKLIKVHHSNTEHVPQEADHSLYSGGFF 368
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ DR +MD++ ++ PEQL+ L LPF D RL L F Y+ARNFP +L+++E Q W HRK
Sbjct: 369 SPKDRALMDQVRQSTPEQLADLALPFEDSRLDNLLFYYKARNFPTSLNDQEMQRWQNHRK 428
Query: 426 -KMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
++L S + +Y L+ L +Y + K ++ ALY Y +
Sbjct: 429 FRLLDDSSPSSITMSDYVQTLELLCEQYHSNSDKLAILKALYTYAE 474
>gi|94500901|ref|ZP_01307427.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
gi|94427020|gb|EAT12002.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
Length = 478
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/434 (44%), Positives = 278/434 (64%), Gaps = 4/434 (0%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YD+ETFG DRPAQFAGVR D I ++F+C+ ADDYLP P A ITGI+PQ
Sbjct: 10 YDFETFGASPIWDRPAQFAGVRTDLDLNIIAEPDMFYCRQADDYLPHPIACMITGISPQT 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EAEF +RIH F P TC+ GYN+IRFDD +RN YRNF+D Y+ W NGNS
Sbjct: 70 CQDKGLPEAEFIKRIHDLFMQPQTCVAGYNSIRFDDEVTRNTLYRNFFDPYQREWQNGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD+LD+MR Y+ PDGI+WP +DG SFKL++L+ ANGI H NAHDA +DVYAT+ L
Sbjct: 130 RWDILDMMRCAYSLRPDGIEWPKGEDGKVSFKLENLSAANGIIHENAHDALSDVYATIGL 189
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L++EK+PKL++YL++ R K + L+D+ N P++H+SGMF + A++ P+A P
Sbjct: 190 AKLVKEKQPKLYQYLFELRRKEAVAPLLDVVNKRPVLHISGMFPVEKGCAAVMVPLAMEP 249
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPILMP 305
+ K+++I +L D +L + Q+ RL+T EL +G+ +P+K +H+NKCP+++P
Sbjct: 250 KNKNAIICFDLMSDPTPLFELTAEQIQARLYTPKAELEAQGIERLPLKSIHINKCPVVLP 309
Query: 306 IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GF 364
+ E ++WG+ + NL ++ +L ++ + + ++ + + S D D+ +Y GF
Sbjct: 310 AKMVQPEIAKKWGLSGDQIRSNLAKIKNGPDLTEKLQNVMSRDFEAHS-DPDAMIYSGGF 368
Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHR 424
F D+Q M+ I ++ PE L LN+ F DRRL E+ FRYRARN+P TL+ E + W R
Sbjct: 369 FGPTDKQAMETIRQSHPEALDDLNISFQDRRLEEMLFRYRARNYPETLTGDEFEQWETFR 428
Query: 425 KKMLTRSRIEEYKN 438
K+ L Y N
Sbjct: 429 KQRLLGPTNGSYLN 442
>gi|167623714|ref|YP_001674008.1| exonuclease I [Shewanella halifaxensis HAW-EB4]
gi|167353736|gb|ABZ76349.1| Exodeoxyribonuclease I [Shewanella halifaxensis HAW-EB4]
Length = 493
Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/469 (44%), Positives = 290/469 (61%), Gaps = 7/469 (1%)
Query: 1 MTNHFVIY--DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ H I+ DYETFG + A DRP+QFAGVR D I E F+CK A+DYLP PEA+
Sbjct: 26 MSEHPTIFWHDYETFGANPAKDRPSQFAGVRTDLDLNIIGEPETFYCKLANDYLPSPEAI 85
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
ITGITPQ A G+ EAEF +I+ FS P TC++GYN++RFDD SR FYRNF D Y
Sbjct: 86 LITGITPQLANLKGMPEAEFMDKINGLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPY 145
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W NGN+RWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H AHDA
Sbjct: 146 AREWQNGNTRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAM 205
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
+DVYAT+ + LI+ +PKLF+Y + R K Q+ KLID+ M PLVHVS A T
Sbjct: 206 SDVYATIDMAKLIKTVQPKLFDYYFSLRQKQQVSKLIDVLEMKPLVHVSSKISALNGCTT 265
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHL 297
+IAPVA+H K++VI NL+ D+ +L ++ +R++T +L +P+ +K+VH+
Sbjct: 266 IIAPVAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQVHI 325
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
NK P + + E+ R D E L+Q LR++ A+++ + S + D D
Sbjct: 326 NKSPFIAAANTLTDENAARLDFDKAFAREQFRKLKQHPELREKLVAVFDVEHDSKAVDPD 385
Query: 358 SQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
LY GFF+ D+ ++ I T P L+ L L F D RL E+ FRYRARN+P TL + E
Sbjct: 386 QALYSGGFFSSADKAKIEIIRNTKPSNLAALELDFDDSRLAEMLFRYRARNYPETLDDSE 445
Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+ W R+ TR +Y +L++L E + DE K+ L+ AL YL+
Sbjct: 446 QYRW---REFCQTRLNDPDYIIRLENLLEETEQDESKQKLLQALCHYLR 491
>gi|91793639|ref|YP_563290.1| exonuclease I [Shewanella denitrificans OS217]
gi|91715641|gb|ABE55567.1| Exodeoxyribonuclease I subunit C [Shewanella denitrificans OS217]
Length = 470
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/460 (44%), Positives = 280/460 (60%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKLATDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF RI+ FS NTC++GYN++RFDD SR FYRNF D Y W NGNS
Sbjct: 72 ANMKGIPETEFMGRINALFSQENTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREWQNGNS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF PDGI WP ++DG SFKL+ L ANG+ H AHDA +DVYAT+A+
Sbjct: 132 RWDIIDLVRACYAFRPDGINWPRKEDGTVSFKLELLTQANGLSHEKAHDAMSDVYATIAM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI++ +PKL++Y + R K + ID+ M PLVHVS A + T LIAP+A+HP
Sbjct: 192 AKLIKQVQPKLYDYYFSLRRKQAVAAQIDVLKMQPLVHVSSKISALNACTTLIAPMAYHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPI 306
K++V+ NL+ D+ +L + ++A R++TS +L +P+P+K++HLNKCP +
Sbjct: 252 TNKNAVLCVNLAMDISPLLELSAEEIAARMYTSRADLAPDELPIPLKQIHLNKCPFIASP 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY-DGFF 365
+ R D E L+Q LR++ ++ + + D D LY GFF
Sbjct: 312 KLLDDDLTSRLNFDKAFAREQYKRLKQHPELREKLVGVFEQTKEFNHSDPDLMLYGGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ MD I +T P+ L+ L+L F D R+ E+ FRYR RN+P L E W E +
Sbjct: 372 SHADKAKMDIIRQTQPQNLAALDLKFDDNRIAEMLFRYRGRNYPELLDHDESVRWREFCQ 431
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L + +Y KL++L DE K+ L+ AL +YLQ
Sbjct: 432 SRLADA---DYVIKLENLLEASAQDEHKQKLLRALCQYLQ 468
>gi|161485723|ref|NP_660867.3| exonuclease I [Buchnera aphidicola str. Sg (Schizaphis graminum)]
gi|25090272|sp|Q8K923|EX1_BUCAP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|21623449|gb|AAM68078.1| exodeoxyribonuclease I [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 482
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/459 (44%), Positives = 281/459 (61%), Gaps = 8/459 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F+ YDYETFG +LD+PAQF+ +R D+ + +E + F+C P+DDYLPDP ++ ITGI
Sbjct: 11 NFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSILITGI 70
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TP+ + G E +FS++IH PNTCIIGYNNI FDD +RNIFYRNF D Y WSW
Sbjct: 71 TPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLDPYEWSWK 130
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N NSRWDLL+V+RA YA P GIQWP + G FKL DL N I H NAHDA +DVYA
Sbjct: 131 NNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATSDVYA 190
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ L LI+ K+PKLF++ + YR KN+L +LIDI+ TP+++VS FGA R N + I P+
Sbjct: 191 TIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSSYFGALRQNMSCILPL 250
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDS-VQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+W K+ +I +L F+D+D + K + S+ +K L + I V+LN+CPI
Sbjct: 251 SWDLHNKNILISIDL------FKDIDKLIVFCKTVSISNISIKDLFDLGIVLVYLNRCPI 304
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK-AIYNKPYTSSSQDVDSQLY 361
L PI +KE R + + L+++ L D K + K +S +VD Q+Y
Sbjct: 305 LAPIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLLKKNENKNSLNVDLQIY 364
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
D FF D+ ++ +I T L + L F D RL ELFFRY+ARNF + L EK++W+
Sbjct: 365 DSFFNFHDKNLIKKISLTKSSDLKKMKLDFKDPRLKELFFRYKARNFFNILKNDEKKEWI 424
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
+ K L + Y +K++SL Y D K L++ L
Sbjct: 425 NYCLKTLNSFFLTGYIDKIESLLKIYSYDVKKNNLLSDL 463
>gi|157962308|ref|YP_001502342.1| exonuclease I [Shewanella pealeana ATCC 700345]
gi|157847308|gb|ABV87807.1| Exodeoxyribonuclease I [Shewanella pealeana ATCC 700345]
Length = 470
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/460 (44%), Positives = 285/460 (61%), Gaps = 5/460 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + A DRP+QFAGVR D I E F+CK A+DYLP PEA+ ITGITPQ
Sbjct: 12 HDYETFGANPAKDRPSQFAGVRTDMDLNIIGEPETFYCKLANDYLPSPEAILITGITPQL 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ EAEF +I+ FS P TC++GYN++RFDD SR FYRNF D Y W NGNS
Sbjct: 72 ANLKGMPEAEFMDKINSLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREWQNGNS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H AHDA +DVYAT+ +
Sbjct: 132 RWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAMSDVYATIDM 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+ +PKLF+Y + R K Q+ KLID+ M PLVHVS A T +IAPVA+H
Sbjct: 192 AKLIKSVQPKLFDYYFSLRLKQQVSKLIDVLEMKPLVHVSSKISALNGCTTIIAPVAYHS 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPI 306
K++VI NL+ D+ +L ++ +R++T +L +P+ +K++H+NK P +
Sbjct: 252 TNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQIHINKSPFIAAA 311
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
+ E+ R D L+Q LR++ A+++ + + D D LY GFF
Sbjct: 312 NTLTDENAARLDFDKAFARAQYKKLKQHPELREKLVAVFDVEHEGKTVDPDQALYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+ ++ I T P L+ L L F D+RL E+ FRYRARN+P TL + E+ W R+
Sbjct: 372 SSADKAKIEIIRHTQPRNLAALELDFDDQRLSEMLFRYRARNYPETLDDSEQYRW---RE 428
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
TR +Y +L++L E + DE K+ L+ AL YL+
Sbjct: 429 FCQTRLNDPDYIIRLENLLEETEQDESKQKLLQALCHYLR 468
>gi|89095382|ref|ZP_01168297.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
gi|89080350|gb|EAR59607.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
Length = 488
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/472 (41%), Positives = 289/472 (61%), Gaps = 7/472 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG D D P QFAG+R D IE + +CKP+DD LP PEA ITGIT
Sbjct: 8 FYWHDYETFGADPKRDWPVQFAGIRTDEHLNVIEEPLMVYCKPSDDQLPYPEACLITGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA+ +G+ EA+F +IH+ + P TC +GYN+IRFDD +R YRNF+D Y W N
Sbjct: 68 PQKAMDEGLCEADFFAKIHEQLARPGTCGVGYNSIRFDDEVTRYGLYRNFFDPYAREWQN 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
G SRWD++D++R P+GI WP +DG S +L+DL +ANGI+H +AHDA +DVYAT
Sbjct: 128 GCSRWDIIDMLRLTRTLRPEGIVWPKYEDGTPSLRLEDLTVANGIDHGHAHDALSDVYAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L+REK+PKLF Y+ + R+K ++ L+D Q+ P++H+S + NTA++AP+A
Sbjct: 188 IEMAKLVREKQPKLFNYVLNNRSKQSIQSLLDTQSFKPVLHISSRYAIEYGNTAVVAPIA 247
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPIL 303
HP K+ VI +L + L + +L + L+T EL P + +K+VH+NKCPI+
Sbjct: 248 THPVNKNGVIVWDLRFNPEPLMQLSAEELRQLLYTPRAELDDSDPRIALKQVHINKCPII 307
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD- 362
P E R I+ +C +L +LR T R++ IY++ + D D LY
Sbjct: 308 APAGMISSEEAARLQINGDQCRAHLQMLRSYTGFREKLADIYSESPFDTDSDPDQMLYSG 367
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF DRQ+MD++ + P+QL+ L+LPF D RL E+ RY+ARN PH L+ +++ W
Sbjct: 368 GFFTPSDRQLMDQVRESGPDQLAELDLPFQDPRLEEMLLRYKARNCPHVLNHEDQMQWET 427
Query: 423 HRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+R++ L + +E++ +L L E + DE ++ ++ L Y + + P
Sbjct: 428 YRQRKLLKGEGGHLTMEKFYQRLNELYAEAETDEKRKHILEELAVYAEAIYP 479
>gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2]
Length = 480
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/454 (44%), Positives = 284/454 (62%), Gaps = 14/454 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGITPQ+
Sbjct: 10 YDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQR 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W GNS
Sbjct: 70 LAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV AT+AL
Sbjct: 130 RWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRATIAL 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R +++ P+AWHP
Sbjct: 189 ARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVVLPLAWHP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP++ P+
Sbjct: 247 RNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPL 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ C + LLRQ QT D+ A+Y + S+S D + QLYDGF
Sbjct: 307 SVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFI 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W
Sbjct: 367 GDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNAAERQQW----- 421
Query: 426 KMLTRSRI--EEY--KNKLQSLSGEYKGDEGKEG 455
+ R+R+ EEY N L + + ++G
Sbjct: 422 ESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQG 455
>gi|320086500|emb|CBY96271.1| exonuclease I, 3'-> 5' specific [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 333
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/316 (57%), Positives = 233/316 (73%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPVLA 311
Query: 305 PIDYCKKEHFERWGID 320
+ + E +R GI+
Sbjct: 312 QANTLRPEDADRLGIN 327
>gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
Length = 478
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/461 (43%), Positives = 285/461 (61%), Gaps = 14/461 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R +++
Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ + C LLRQ QT D+ A+Y + S+S D +
Sbjct: 298 CPVVAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 417
Query: 419 DWLEHRKKMLTRSRI--EEY--KNKLQSLSGEYKGDEGKEG 455
W + R+R+ EEY N L + + ++G
Sbjct: 418 QW-----ESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQG 453
>gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1]
gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1]
Length = 480
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/454 (44%), Positives = 284/454 (62%), Gaps = 14/454 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGITPQ+
Sbjct: 10 YDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQR 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W GNS
Sbjct: 70 LAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV AT+AL
Sbjct: 130 RWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRATIAL 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R +++ P+AWHP
Sbjct: 189 ARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVVLPLAWHP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP++ P+
Sbjct: 247 RNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPL 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ C + LLRQ QT D+ A+Y + S+S D + QLYDGF
Sbjct: 307 SVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFI 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W
Sbjct: 367 GDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQW----- 421
Query: 426 KMLTRSRI--EEY--KNKLQSLSGEYKGDEGKEG 455
+ R+R+ EEY N L + + ++G
Sbjct: 422 ESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQG 455
>gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
Length = 480
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/454 (44%), Positives = 284/454 (62%), Gaps = 14/454 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGITPQ+
Sbjct: 10 YDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQR 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W GNS
Sbjct: 70 LAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV AT+AL
Sbjct: 130 RWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRATIAL 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R +++ P+AWHP
Sbjct: 189 ARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVVLPLAWHP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP++ P+
Sbjct: 247 RNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPL 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ + C LLRQ QT D+ A+Y + S+S D + QLYDGF
Sbjct: 307 SVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFI 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W
Sbjct: 367 GDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQW----- 421
Query: 426 KMLTRSRI--EEY--KNKLQSLSGEYKGDEGKEG 455
+ R+R+ EEY N L + + ++G
Sbjct: 422 ESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQG 455
>gi|257471605|ref|ZP_05635604.1| exonuclease I [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
Length = 505
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/463 (41%), Positives = 283/463 (61%), Gaps = 6/463 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 35 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTL-----INMCKKICFDSIFIKNLLDSGVVLLHLNRCP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
L+H +L +EYKN +Q L +Y + K L+ L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492
>gi|149376775|ref|ZP_01894532.1| Exonuclease I [Marinobacter algicola DG893]
gi|149358896|gb|EDM47363.1| Exonuclease I [Marinobacter algicola DG893]
Length = 481
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/479 (42%), Positives = 290/479 (60%), Gaps = 10/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE + +C PADDY+P PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPIHDRPSQFAGVRTDADLNIIEDPLIIYCAPADDYVPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL +G EAEF +I++ FS P TC +GYN++RFDD SR+ YRN D Y
Sbjct: 61 TGITPQKALEEGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVSRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GIQWP ++DG+ SF+L++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIQWPKKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLFE++ ++K+ R ++D +M P+ H+S + A+R A++
Sbjct: 181 VEATIAVAKLIKEKQPKLFEFVLQNKDKHSARAMLDTASMKPVFHISAKYPATRGCCAMV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A HP K+ VI +L D Q+ +R+FTS EL +G P+K V LNK
Sbjct: 241 APLADHPTNKNLVIVYDLREDPSELIHATPEQIRERVFTSQAELGEGTSRFPLKGVQLNK 300
Query: 300 CPILMPIDYCKKEHFERWG---IDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
CP+L P K ER +D R E+LT+LR+ +L R +++P+ D
Sbjct: 301 CPVLAPATMLKSLSGERLAELELDGDRLREHLTMLRKAPDLPARIAEAFDQPHEGDLTDP 360
Query: 357 DSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D QLY GF DR+ ++ +L+ E L + F D RL E+ FRYRARN+P TL +
Sbjct: 361 DEQLYAGGFIGKTDREKLNWLLQQPVETLGEQEVQFEDGRLQEMLFRYRARNYPSTLIGE 420
Query: 416 EKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E + W E R + L + +E + +LQ L+ + + K ++ L+ Y + +IP
Sbjct: 421 EMERWEEFRSQRLMSPKKGWRSLEAFGRELQRLAADPELTPEKRHVLEELHLYGESLIP 479
>gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
Length = 480
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/415 (46%), Positives = 269/415 (64%), Gaps = 5/415 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGITPQ+
Sbjct: 10 YDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQR 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W GNS
Sbjct: 70 LAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV AT+AL
Sbjct: 130 RWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRATIAL 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R +++ P+AWHP
Sbjct: 189 ARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVVLPLAWHP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP++ P+
Sbjct: 247 RNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPL 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ + C LLRQ QT D+ A+Y + S+S D + QLYDGF
Sbjct: 307 SVLRGEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFI 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W
Sbjct: 367 GDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQW 421
>gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1]
Length = 480
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/454 (44%), Positives = 284/454 (62%), Gaps = 14/454 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGITPQ+
Sbjct: 10 YDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQR 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W GNS
Sbjct: 70 LAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV AT+AL
Sbjct: 130 RWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRATIAL 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R +++ P+AWHP
Sbjct: 189 ARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVVLPLAWHP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP++ P+
Sbjct: 247 RNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPL 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ + C LLRQ QT D+ A+Y + S+S D + QLYDGF
Sbjct: 307 SVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFI 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W
Sbjct: 367 GDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVDERQQW----- 421
Query: 426 KMLTRSRI--EEY--KNKLQSLSGEYKGDEGKEG 455
+ R+R+ EEY N L + + ++G
Sbjct: 422 ESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQG 455
>gi|311086276|gb|ADP66358.1| exonuclease I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
Length = 505
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/463 (41%), Positives = 282/463 (60%), Gaps = 6/463 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 35 TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTL-----INMCKKICFDSIFIKNLLDSGVVLLHLNRCP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
L+H +L +EYKN +Q L +Y + K L+ L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492
>gi|126667153|ref|ZP_01738127.1| exonuclease I [Marinobacter sp. ELB17]
gi|126628309|gb|EAZ98932.1| exonuclease I [Marinobacter sp. ELB17]
Length = 507
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/480 (42%), Positives = 293/480 (61%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T F +DYETFG D DRP QFAGVR D + IE V FC+PADDYLP PEA I
Sbjct: 26 LTPTFYWHDYETFGVDPLHDRPCQFAGVRTDSELNIIEEPLVIFCRPADDYLPAPEACLI 85
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+A ++G EAEF I+ FS P TC++GYN++RFDD +RN YRN D Y
Sbjct: 86 TGITPQQATQEGYPEAEFITMINSAFSQPGTCVVGYNSLRFDDEVTRNTLYRNLRDPYGR 145
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDL+DV+R Y P+GI+WP + DG+ SF+L+DLA ANG+EH AHDA +D
Sbjct: 146 EWQNGNSRWDLIDVVRLAYTLRPEGIEWPLKPDGSPSFRLEDLARANGLEHGQAHDAMSD 205
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V ATLAL LI+E++P+LFE+ ++K RK++D P+ HVSG + AS+ + AL+
Sbjct: 206 VTATLALARLIKERQPRLFEFARANKSKQAARKMLDTSTRKPVFHVSGKYPASQGSCALV 265
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
APVA H K+ VI +L + + Q+ +R+FT+ L +G+ P+K + LNK
Sbjct: 266 APVAEHASNKNQVIVYDLRENPDELINASVDQIRERVFTAQSALPEGVRRFPLKAIQLNK 325
Query: 300 CPILMP---IDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQD 355
CP+L P + E ++ +D ++ +L +LRQ + R A + + Y + D
Sbjct: 326 CPVLAPATMLAALSPERLQQLNLDGEQMRRHLAILRQAGPDFGQRVAAAFERDYDTKLTD 385
Query: 356 VDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D Q+Y GFF+ DR +DR L P+QL+ F+D+RL E+ FRYRARN+P TLS
Sbjct: 386 PDEQIYAGGFFSPSDRTQLDRALAITPQQLAESEFQFTDQRLAEMLFRYRARNYPDTLSG 445
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
++ + W + R++ LT+ + EY +LQ L + + + ++ L+ Y + + P
Sbjct: 446 EDMERWEQFREQRLTQPAKGWLSLAEYGAELQRLMAKPDVTQQQRHILEELHLYGEAISP 505
>gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7]
gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7]
Length = 478
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 268/422 (63%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGITPQRLAERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWPE-ADGRVSLKLELLTAANGLEHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+ R L I + PLVHVSG F A R +++
Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKH--RVLDQIHLLQPLVHVSGRFSAERHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + +L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLRADPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E R GID + C LLRQ Q ++ Y++ ++S+D +
Sbjct: 298 CPVVAPLSVLRAEDRLRTGIDVEACQRRAELLRQRQAAWTEKLALAYSEESFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ R PEQL+ PF D RL ELFFRYRARNFP TLS E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQLRRAEPEQLAREQWPFDDIRLQELFFRYRARNFPETLSPSERQ 417
Query: 419 DW 420
W
Sbjct: 418 QW 419
>gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58]
gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58]
Length = 480
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/454 (44%), Positives = 283/454 (62%), Gaps = 14/454 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGITPQ+
Sbjct: 10 YDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQR 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W GNS
Sbjct: 70 LAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV AT+AL
Sbjct: 130 RWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRATIAL 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R ++ P+AWHP
Sbjct: 189 ARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVALPLAWHP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP++ P+
Sbjct: 247 RNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPL 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ C + LLRQ QT D+ A+Y + S+S D + QLYDGF
Sbjct: 307 SVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFI 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W
Sbjct: 367 GDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQW----- 421
Query: 426 KMLTRSRI--EEY--KNKLQSLSGEYKGDEGKEG 455
+ R+R+ EEY N L + + ++G
Sbjct: 422 ESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQG 455
>gi|311087440|gb|ADP67520.1| exonuclease I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
Length = 505
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/460 (41%), Positives = 281/460 (61%), Gaps = 6/460 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT IT
Sbjct: 38 FLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLITHIT 97
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WSW N
Sbjct: 98 PQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWSWKN 157
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DVYAT
Sbjct: 158 GNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDVYAT 217
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I P+A
Sbjct: 218 IEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCILPIA 277
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WH + +I +L D++ + + K++ +K L+ + +HLN+CPIL
Sbjct: 278 WHENNSNILIAIDLFKDIKTL-----INMCKKICFDSIFIKNLLDSGVVLLHLNRCPILA 332
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDG 363
PI +KE + R + + L+++ K I++K T+ +VD ++Y+G
Sbjct: 333 PIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEIYNG 392
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
FF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ WL+H
Sbjct: 393 FFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIWLKH 452
Query: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+L +EYKN +Q L +Y + K L+ L ++
Sbjct: 453 CMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLSDF 492
>gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
Length = 480
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/454 (44%), Positives = 283/454 (62%), Gaps = 14/454 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G D DRP Q AG+R D +I +C+P+DD LP P A ITGITPQ+
Sbjct: 10 YDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQR 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y W GNS
Sbjct: 70 LAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +DV AT+AL
Sbjct: 130 RWDLIDMVRTAYALRPEGIQWPQL-DGRLSLKLEMLTAANGLEHGQAHDALSDVRATIAL 188
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+++P+L++YLY R+K+++ L ++ + PLVHVSG F A R +++ P+ WHP
Sbjct: 189 ARLIRQRQPRLYDYLYQLRSKHKV--LDQVRLLQPLVHVSGRFSAERHFLSVVLPLVWHP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+CP++ P+
Sbjct: 247 RNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPL 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ + C LLRQ QT D+ A+Y + S+S D + QLYDGF
Sbjct: 307 SVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFI 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q W
Sbjct: 367 GDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQQW----- 421
Query: 426 KMLTRSRI--EEY--KNKLQSLSGEYKGDEGKEG 455
+ R+R+ EEY N L + + ++G
Sbjct: 422 ESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQG 455
>gi|288942185|ref|YP_003444425.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
gi|288897557|gb|ADC63393.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
Length = 477
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/477 (42%), Positives = 297/477 (62%), Gaps = 12/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ F +DYET+G D DRP QFAGVR D ++ V FC+P+DD LP P+A +
Sbjct: 1 MSDTFYWHDYETWGADPRRDRPCQFAGVRTDADLNEVGDPLVLFCRPSDDLLPHPDACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TG+TPQ+ R+GVVEAEF+R IH S P TC +GYN++RFDD +R++FYRNF+D Y
Sbjct: 61 TGLTPQRVAREGVVEAEFARAIHAELSRPGTCGVGYNSLRFDDEVTRHLFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W +GNSRWDL+DV+R +A P+GI+WP D+G TSF+L+ L +ANGI+H AHDA AD
Sbjct: 121 EWRSGNSRWDLIDVLRLAHALRPEGIEWPLNDEGTTSFRLEQLTVANGIDHGQAHDALAD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF Y R+K ++R L+D + PL+HVS F A+ A I
Sbjct: 181 VRATIALARRLRDIQPRLFSYALTLRDKRRVRALLDERR--PLLHVSARFPAALGCIAPI 238
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
PVA HP + VI +L D +L ++ +RLFT ++L G+ VP+K VH+N
Sbjct: 239 CPVAAHPTNSNGVICFDLRADPSQLLELSVEEIRRRLFTPSEDLPAGVERVPLKTVHVNH 298
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358
P+L P+ E ERW ID R + + + + + R +A++ +P + D +
Sbjct: 299 VPMLAPLATLTPERAERWSIDPARVVRHAQWIAASSIAIESRVRAVHERPLPVET-DPEL 357
Query: 359 QLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF +D DR+ D+++R+ P +L+T FSD RL L FRYRARN+P TL+ +E+
Sbjct: 358 MLYSGGFLSDADRRACDQVVRSNPAELATAPPRFSDPRLGTLLFRYRARNWPETLTPEER 417
Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+DW +R LT +IE Y+ +L L+G + D + +++AL ++ + V+
Sbjct: 418 EDWDAYRFMRLTDPDGGASLQIEGYEARLAELAGVHDDDPARLAILDALGDWAEQVL 474
>gi|33519912|ref|NP_878744.1| exonuclease I [Candidatus Blochmannia floridanus]
gi|33504257|emb|CAD83520.1| exodeoxyribonuclease I [Candidatus Blochmannia floridanus]
Length = 501
Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/484 (42%), Positives = 307/484 (63%), Gaps = 24/484 (4%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+IYDYETFG + ALDRPAQFA +RV+ +E EVFFC+ +DYLP+PE+V ITGIT
Sbjct: 10 FLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P L +G++E +F+ +I Q F+VPNTCI+GYNNI FDD +SRNIFYRNFYD Y+WS+ +
Sbjct: 70 PYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYDPYKWSYHH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLL V+RA Y+ P GIQWP SF+L DL LAN I+H+NAHDA +D++AT
Sbjct: 130 GNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAHDATSDIFAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN-TALIAPV 243
L ++ LI+ +P+LF++LY++R KNQL+K+I++ +M PL+H+S +N + P+
Sbjct: 190 LEIMKLIKYTQPQLFQFLYNHRTKNQLQKIINLNSMKPLIHISNKINNKYNNFIHFLLPI 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPI 302
HP + +I NL + + +L+ L + + + + L+ +P++ + LN CPI
Sbjct: 250 TLHPNNHNVLITYNLLNKLDILWNLNINTLYQNIKDNQQCIYNLLKQIPLQLIRLNSCPI 309
Query: 303 LMPIDYCKK-----EHFERWGIDHKRCLENLTLLRQQTN---LRDRFKAIY-------NK 347
+PI ++ ++ D++ L+NL ++Q+ N L+ + K+ Y NK
Sbjct: 310 FIPITVLQENNNIFKYTSELLSDYQNHLKNLHEIKQKINYTHLQQKIKSFYVIIESYLNK 369
Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILR-TAPEQLST--LNLPFSDRRLPELFFRYR 404
S VD+QLY+GFF D +I+ +I T ++LST +N +D RL L F YR
Sbjct: 370 IKNKLSTHVDNQLYNGFFQYSDCRIIKQIRNITDVQKLSTIHINSNSNDNRLKSLLFFYR 429
Query: 405 ARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY--KGDEGKEGLINALYE 462
+RNFPHTL+ +EK+ W ++K ML ++YKN L ++ + + K L+++L +
Sbjct: 430 SRNFPHTLNSEEKKIWTTYKKNMLLNQ--DKYKNYLHHINYLLFNQNNIKKINLLSSLKK 487
Query: 463 YLQW 466
Y +
Sbjct: 488 YYTY 491
>gi|56460478|ref|YP_155759.1| exonuclease I [Idiomarina loihiensis L2TR]
gi|56179488|gb|AAV82210.1| Exonuclease I [Idiomarina loihiensis L2TR]
Length = 479
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/470 (43%), Positives = 283/470 (60%), Gaps = 14/470 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + +DRPAQFAG+R D + I + +P D+LP+PEA ITGIT
Sbjct: 9 FYWHDYETWGANPLVDRPAQFAGLRTDTDFNVIGRPLTLYAQPTPDFLPNPEATLITGIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A + GV EAEFS+ I F PNT IIGYNNIRFDD +R +FYRNFYD Y +SW N
Sbjct: 69 PQLAAKQGVGEAEFSKAIANEFQKPNTTIIGYNNIRFDDEVTRLLFYRNFYDPYEYSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDL+DV+RA +A PDGI WP DG S KL+ L++AN IEH AHDA +DVYAT
Sbjct: 129 GNSRWDLIDVVRACFALRPDGINWPENSDGQPSLKLEHLSVANNIEHGQAHDAMSDVYAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L LI EK+PKL+++ Y R K +L L + Q PL HVSG +G + + I P+
Sbjct: 189 IGLAKLISEKQPKLWQWAYSIRRKQKLLNLFNWQAPEPLAHVSGFYGTANRYLSAILPLG 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
+HP+ +V+ +L F D +L + +TS EL +GL I+ +HL +CP
Sbjct: 249 FHPKQNSNVVAWDLRVPPMDFADKSVEELTELTYTSRRELEEQGLQKSGIQNIHLGRCPF 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L PI E + +D N L++ ++ RD+ ++ + + DVD Q+Y
Sbjct: 309 LAPIKTISAEAADSAALDTAALETNAKWLQENSDFRDKLMQVFEQTKEFAPRTDVDHQIY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW- 420
DGFF+ D++ M+ I + P QL+ L L F D+R+P L FRYRARN+P TLS+KE W
Sbjct: 369 DGFFSPQDKKHMEIIRSSEPHQLAGLELDFQDKRMPALLFRYRARNYPSTLSDKELNKWR 428
Query: 421 -------LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+E + +L+ E + KL+ L+ +++ D K L+ +LY+Y
Sbjct: 429 LFCQQRLIEPPEGLLS---AEGFALKLEDLANQHQEDAHKLRLLKSLYDY 475
>gi|119476956|ref|ZP_01617237.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
gi|119449763|gb|EAW31000.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
Length = 478
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/467 (42%), Positives = 282/467 (60%), Gaps = 8/467 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG D A DRP+QFAGVR D + I V FCKPA D LP PEA ITGIT
Sbjct: 6 FYWHDYETFGADPARDRPSQFAGVRTDSDFNIIGEPLVIFCKPAADILPQPEACLITGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL GV EAEF R+IH FS P TC +GYN++RFDD SR YRNFYD Y W N
Sbjct: 66 PQQALEQGVCEAEFIRQIHAEFSQPGTCAVGYNSVRFDDEVSRYTLYRNFYDPYAREWQN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD++D++R A P+GI WP+ D+G SFKL+ L ANGI H +AHDA +DV+AT
Sbjct: 126 GNSRWDIIDMVRVCCALRPEGINWPTHDNGMPSFKLEQLTAANGISHESAHDALSDVHAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++K+PKLF+YL R+K+++ ++++ P++H S M+ A R T LI PVA
Sbjct: 186 IAMAKLIKQKQPKLFDYLLKLRSKHEVSAMLNVAEKLPVLHTSAMYPAHRFCTTLIMPVA 245
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
HP K+ VI +LS D L++ Q+ +RL+T EL +G +P+K +H+N+CP++
Sbjct: 246 VHPTNKNGVICYDLSVDPAPLLSLNAGQITERLYTPASELPEGAARIPLKTIHINRCPVV 305
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD- 362
+ + ER +D + ++ L + L ++ ++ + D D LY
Sbjct: 306 VTSKLMDEAVAERIQLDLPKARKHYQALVKTQGLAEKLSEVFAERSFPERTDPDVMLYSG 365
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ D+ +M ++ ++P++L + F D RL ++ FRYRARNFP +LS +E Q W E
Sbjct: 366 GFFSQNDKAVMAQVRCSSPDELREHSFVFEDARLDDMLFRYRARNFPESLSAEELQQWHE 425
Query: 423 HRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
R LT +EE+ Q+L + + ++ L +Y
Sbjct: 426 FRYYRLTDPEADVSISMEEFLETTQALLNDEACSDRDRAILEELQDY 472
>gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ]
gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ]
Length = 476
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/431 (44%), Positives = 265/431 (61%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DRP Q AG+R D +I + +C+PADD LP P A +
Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP+ G+ EAEF R+H ++P TC GYN++RFDD SR+ YRNF+D Y
Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI WP +++G S +L+ L ANGIEH AHDA AD
Sbjct: 121 EWQAGNSRWDLIDLLRTAYALRPEGIHWP-QEEGRVSLRLERLTAANGIEHGQAHDALAD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL L+RE++PKL+ YLY R+K R L I+ + PLVHVSG F A R A++
Sbjct: 180 VRATIALARLLRERQPKLYGYLYQLRSKQ--RVLDQIRLLRPLVHVSGRFAAERGYLAVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D DLD+ L +RL+ +EL PVP+K VH+N+
Sbjct: 238 LPLAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP+L P+ ++E R +D C + LL Q +++ IY +S+D +
Sbjct: 298 CPVLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKLARIYMGDEFPASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY GFF + DR++ +++ R PE L N F D RLPEL FRYRARNFP TL+ E +
Sbjct: 358 QLYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTAAEGE 417
Query: 419 DWLEHRKKMLT 429
W E ++ L+
Sbjct: 418 CWQEFCRRRLS 428
>gi|77460659|ref|YP_350166.1| exonuclease I [Pseudomonas fluorescens Pf0-1]
gi|77384662|gb|ABA76175.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf0-1]
Length = 476
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/451 (43%), Positives = 287/451 (63%), Gaps = 16/451 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I++ +C+P++D LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDG+ WP+ D+G + KL+ L AN I+H NAH+A +D
Sbjct: 120 EWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNIDHGNAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID-IQNMTPLVHVSGMFGASRSNTAL 239
V AT+AL LIREK+PKL+++L+ R+K +K++D I+ + P+VH+SG F A+RS +
Sbjct: 180 VRATIALARLIREKQPKLYDWLFQLRSK---QKVMDQIRLLQPMVHISGRFSAARSYVGV 236
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+AWHPR K+++I C+L D + DLD+ L +RL+T D+L +G +PVP+K +H+N
Sbjct: 237 VLPLAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHIN 296
Query: 299 KCPILMPIDYCKKEHFERWGIDHKR-CLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
KCP++ P+ + + +R G+D L L Q +D+ AIY +S++D +
Sbjct: 297 KCPVVAPLSVLRADDQQRLGLDMALYQARALRLSDAQQVWKDKVSAIYASEDFTSNEDPE 356
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
QLYDGF D DR++ +++ T P QL+ PF D RLPEL FRYRARNFP TL+ +E+
Sbjct: 357 QQLYDGFIGDRDRRLCEQVRATDPGQLAREQWPFDDERLPELLFRYRARNFPDTLNFEEQ 416
Query: 418 QDWLEHRKKMLTRSRIEEYK----NKLQSLS 444
+ W ++ R R+ + N LQS +
Sbjct: 417 ERW-----RIFCRQRLSAPEWGAPNTLQSFA 442
>gi|307546461|ref|YP_003898940.1| exonuclease I [Halomonas elongata DSM 2581]
gi|307218485|emb|CBV43755.1| exonuclease I [Halomonas elongata DSM 2581]
Length = 506
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/484 (41%), Positives = 283/484 (58%), Gaps = 18/484 (3%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG D DRP+QFA +R D + +I FCKPADDYLP P+A ITGIT
Sbjct: 21 FLWHDYETFGADPRRDRPSQFAAIRTDADFNEIGEPIELFCKPADDYLPHPQACLITGIT 80
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A R G+ EAEF+ R+ S P TC +GYNN+RFDD R++FYRN D Y W N
Sbjct: 81 PQQAKRRGLPEAEFAGRVQAAMSEPGTCALGYNNLRFDDEVGRHLFYRNLIDPYAREWQN 140
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDL+DV+RA +A PDGI WP+RDDG SFKL+DL ANGIEH AHDA ADV AT
Sbjct: 141 GNSRWDLIDVVRAFHALRPDGITWPTRDDGTPSFKLEDLTAANGIEHAGAHDALADVRAT 200
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L L+R LF+YL R K + + ID+ + P++H+S + ASR +AL+ P+A
Sbjct: 201 IELARLLRRSNANLFDYLLGMRGKRAVGRAIDVASRKPVLHISRRYPASRGCSALVMPLA 260
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
HP + VI +L+ D LD+ Q+ R+F S+D+L +G +P+K +H+NKCP++
Sbjct: 261 EHPTNPNGVIVYDLAVDPEPLLSLDAQQIRDRVFVSNDDLAEGESRIPLKVIHINKCPVI 320
Query: 304 MPIDYCK----------KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
MP + K E ER G+D C + L ++ R ++ P S
Sbjct: 321 MPANALKDASGPHRGEYGEIVERLGVDVASCRRHWKALAASPDVSARVAEVFAGPPPESP 380
Query: 354 QDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
D D LY GFF+ DRQ M R+ + P L F D RL E+ FRYRAR++P TL
Sbjct: 381 HDPDLMLYSGGFFSPSDRQQMQRVRDSDPWDLVGARFAFQDPRLEEMLFRYRARSYPDTL 440
Query: 413 SEKEKQDWLEHRKKMLTRSRIE-----EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+ +E+ W R + + + E+ +++ L+ D ++ ++ L +++ +
Sbjct: 441 TGEEQARWEAFRWERMNDPAVAGFTLTEFAREIERLNQVSLADRERQ-ILEELVMHVEAI 499
Query: 468 IPKE 471
+P +
Sbjct: 500 MPAQ 503
>gi|302608296|emb|CBW44754.1| Exodeoxyribonuclease I, Exonuclease I, DNA
deoxyribophosphodiesterase, dRPase [Marinobacter
hydrocarbonoclasticus]
Length = 482
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/480 (41%), Positives = 290/480 (60%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL DG EAEF +I++ FS P TC +GYN++RFDD +R+ YRN D Y
Sbjct: 61 TGITPQKALEDGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI WP ++DG+ SF+L++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIHWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLF+++ + ++K+ R+++D M P+ H+S + A+R AL+
Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTAAMKPVFHISAKYPATRGCCALV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A K+ VI +L D + ++ +R+FTS EL +G+ P+K V LNK
Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300
Query: 300 CPILMP---IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355
CP+L P + +E +D NL LR+ +L R + + + S D
Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARIAQAFEQDFQGSDLTD 360
Query: 356 VDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D QLY GF + DR+ ++ +L E L+ + F D RLPE+ FRYRARN+P TL
Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVETLAEQEVRFEDARLPEMLFRYRARNYPDTLIG 420
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W + R + L + + +E Y +LQ L+ + + K+ ++ L+ Y + +IP
Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGRELQRLASDPELTPKKQQVLEDLHLYGESLIP 480
>gi|120555513|ref|YP_959864.1| exonuclease I [Marinobacter aquaeolei VT8]
gi|120325362|gb|ABM19677.1| Exodeoxyribonuclease I subunit C [Marinobacter aquaeolei VT8]
Length = 482
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/480 (41%), Positives = 290/480 (60%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL DG EAEF +I+ FS P TC +GYN++RFDD +R+ YRN D Y
Sbjct: 61 TGITPQKALEDGFPEAEFIAQINAAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI WP ++DG+ SF+L++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLF+++ + ++K+ R+++D +M P+ H+S + A+R AL+
Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTASMKPVFHISAKYPAARGCCALV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A K+ VI +L D + ++ +R+FTS EL +G+ P+K V LNK
Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300
Query: 300 CPILMP---IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355
CP+L P + +E +D NL LR+ +L R + + + S D
Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARVAQAFEQDFQGSDLTD 360
Query: 356 VDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D QLY GF + DR+ ++ +L + L+ + F D RLPE+ FRYRARN+P TL
Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVDTLAEQEMSFEDPRLPEMLFRYRARNYPDTLIG 420
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W + R + L + + +E Y +LQ L+ + + K+ ++ L+ Y + +IP
Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGQELQRLAADTELTPRKQQILEDLHLYGESLIP 480
>gi|85711607|ref|ZP_01042664.1| Exonuclease I [Idiomarina baltica OS145]
gi|85694467|gb|EAQ32408.1| Exonuclease I [Idiomarina baltica OS145]
Length = 486
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/471 (42%), Positives = 282/471 (59%), Gaps = 10/471 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G +DRPAQFAG+R ++ + + +P D+LPDPEAV ITGIT
Sbjct: 14 FYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLITGIT 73
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ AL GV EA F++ I Q S PNT IIGYNNIRFDD +R++ YRNFYD Y +W N
Sbjct: 74 PQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYDPYAHTWQN 133
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDL+DV+RA YA P+GI WP +DG + +L+ L AN I+H AHDA +DV AT
Sbjct: 134 GNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDAMSDVRAT 193
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L+ EK+PKL+++ +R+KN L LI+ Q + PLVHVSG++GA + + P+
Sbjct: 194 IAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADNFFVSAVLPIG 253
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKCPI 302
+H + +++I +L + F D + QL LF S E G ++ LN+CP
Sbjct: 254 FHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGATQITLNRCPF 313
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ---DVDSQ 359
L P+ E +R ID E L + ++ RDR AI++ Q DVD +
Sbjct: 314 LAPLATLTAEAQQRTQIDLATLRERTRWLAENSDFRDRIMAIFDSALEHGEQPPLDVDQR 373
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF D+Q + I PEQL+ + L D RLPEL FRYRARN+P TL + E Q
Sbjct: 374 LYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYPATLDQSELQR 433
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W + ++ LT I E+ KL+ L+ +Y+ ++ + L+ +LY+Y Q
Sbjct: 434 WQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSLYDYAQ 484
>gi|285018531|ref|YP_003376242.1| exodeoxyribonucleaseIprotein [Xanthomonas albilineans GPE PC73]
gi|283473749|emb|CBA16252.1| putative exodeoxyribonucleaseIprotein [Xanthomonas albilineans]
Length = 492
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/473 (42%), Positives = 282/473 (59%), Gaps = 8/473 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG D R AQFA VR D +IE FF +PADD LP P A I
Sbjct: 14 MPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLI 73
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ALR+G+ EA+ RI + + P TC +GYN++RFDD + R+ +RNF+D Y
Sbjct: 74 TGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHDPYER 133
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLD++R ++A PDGI WP R+DGATSFKL+ LALANG+ +AH+A +D
Sbjct: 134 EWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSD 193
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + R +P+L+EY R+K L+D+ M P++HVS + ASR A +
Sbjct: 194 VYATIGMARHFRRCQPRLWEYALKLRDKRFCASLLDVTAMQPVLHVSMRYPASRLCAAPV 253
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR V+ +L GD+ ++A RL+T +L +G + +KEVHLNK
Sbjct: 254 LPLTRHPRIDSRVVVFDLEGDINTLLRCTPEEIADRLYTPQADLPEGEQRIALKEVHLNK 313
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ + ++ FER GID + L +R+ L ++ + ++ + DVD+
Sbjct: 314 APALVAWAHLREAEFERLGIDPAQALAKAARMREAGPTLAEKVRRVFASERATMPADVDA 373
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF AD D++ M ++ TAP QL+ L F D RLPEL FRYRARN+P TLS E+
Sbjct: 374 SLYDGFLADTDKRAMAQVRATAPMQLAPLEHGFRDPRLPELLFRYRARNWPQTLSIAEQT 433
Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W ++R++ L+ E Y +L L + D K+ L++ L + Q
Sbjct: 434 RWDDYRRRRLEVDNGLSELTFETYAAQLADLRLAHPEDATKQALLDQLAAWGQ 486
>gi|330957883|gb|EGH58143.1| exonuclease I [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 476
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/422 (45%), Positives = 266/422 (63%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDADLNEIAPPVNLYCQPSDDILPHPAACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPTLLAEKGLSEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R+K +++ I + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFALRSKQKVQDQIRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLDQDASTLKQRLYTRHEALSEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E ER +D L + + +D+ A+Y K ++S+D +
Sbjct: 298 CPVIAPMGVLRSEDQERLQLDMAGYESRAAALNESREVWQDKVLALYGKEDFTASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF AD DR++ +++ PE+L+ PF D RLPEL FRYRARNFPHTLS +E+Q
Sbjct: 358 QLYDGFIADRDRRLCEQVRLADPERLAGDAWPFDDTRLPELLFRYRARNFPHTLSREEQQ 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|299065319|emb|CBJ36488.1| exodeoxyribonuclease I [Ralstonia solanacearum CMR15]
Length = 477
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/480 (40%), Positives = 293/480 (61%), Gaps = 13/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 1 MTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ L+ G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 61 TGITPQQCLKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DDG SFKL+ L+ ANG++H AHDA +D
Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNDDGKPSFKLEHLSQANGLQHEAAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASRSNTAL 239
V AT+AL +R +P+LF++ + R K R L +I + PL+H+SGM+G R A+
Sbjct: 181 VRATIALARRVRTAQPRLFDFCFALRKKE--RVLAEIGDAPRPLIHISGMYGVDRGCMAV 238
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLN 298
+ P+ WHP K+ +I +LS D +D + +RLFT S D +G +PIK +H+N
Sbjct: 239 VWPLGWHPTNKNELIAWDLSFDPSELFHMDVAAIRERLFTRSADLTEGTTRLPIKSIHIN 298
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K PI++ + + ERWG+D + + + +LR+ ++ +Y + +DVD
Sbjct: 299 KSPIVIGNLKTLQPAQAERWGVDFAAIERHAGIAQGAPDLRETWRQVYAREL-EPIEDVD 357
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL RYRARNFP TL+E E
Sbjct: 358 QNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLLRYRARNFPDTLTEDEH 417
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQWVIPK 470
+ W + R + L R ++ Y +++ L+ E KGD EG+++ALY+Y + V P+
Sbjct: 418 EQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALYDYAEMVAPE 477
>gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
Length = 480
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 284/469 (60%), Gaps = 9/469 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F+ YD ETFG D R AQFA VR DR+ + ++ F +PADD LP P A I
Sbjct: 1 MTDSFLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLPSPVATLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI PQ ALR+G+ EAE + RI + S P TC +GYN++RFDD Y R+ +RNF+D Y
Sbjct: 61 TGIAPQHALREGLSEAEATARIVEEMSRPGTCTLGYNSLRFDDEYVRHTLFRNFFDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDVMR +A P+GI+WP R+DGATSFKL+ LALAN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVMRLAHALRPEGIEWPKREDGATSFKLEHLALANNVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ L L+R+ +P+L++Y R K L+D M P++HVS + A+R A +
Sbjct: 181 VYATIGLARLLRQAQPRLWDYALRMREKRHAASLLDTFAMNPVLHVSQRYPAARMCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + VI +L GD+ + ++A RL+T +L G+ VP+KEVHLN+
Sbjct: 241 LPLAVHPDISNRVIVFDLDGDVDALLEQAPEEIADRLYTPVADLPPGVSRVPLKEVHLNR 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNK-PYTSSSQDVD 357
P+L+P + + F+R GID + L + LR L ++ + +Y + +DVD
Sbjct: 301 SPMLVPWGHLRAPDFQRLGIDPELALARVERLRAHGPELAEKARQVYARGARERGEEDVD 360
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF D DR++ ++ TAP L + F D RLPEL FRYRARN+P TL+ E+
Sbjct: 361 GALYSGFCGDGDRRLCVQVRATAPADLGSRAFEFRDPRLPELLFRYRARNWPETLTPDER 420
Query: 418 QDWLEH-RKKMLTRSRIEEYK-----NKLQSLSGEYKGDEGKEGLINAL 460
W ++ R+++L S + EY ++ +L + GD + L++ L
Sbjct: 421 GRWDDYRRRRLLADSGLSEYTFETFFAEIATLRATHAGDGQRLVLLDQL 469
>gi|237798642|ref|ZP_04587103.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021495|gb|EGI01552.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 476
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/446 (43%), Positives = 271/446 (60%), Gaps = 6/446 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPGDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R K +++ + + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRTKQKVQDQVRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L + L+T HD L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQYDAETLKQHLYTRHDALEEGQLPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + +D+ + +Y K +S+D +
Sbjct: 298 CPVVAPLGVLRSEDQQRLQLDLTAYQARAAQLNDSREVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDGWPFDDARLPELLFRYRARNFPDTLSTEEQQ 417
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLS 444
WL ++ L RS N LQ +
Sbjct: 418 RWLAFCQQRL-RSPESGAPNTLQDFT 442
>gi|289669559|ref|ZP_06490634.1| exonuclease I [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 481
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 282/470 (60%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+G+ EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + F+R G+DH+ L LR+ L ++ + +Y + +++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D+ ++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVILEQYHAQIADLRLAHPDDANKQALLDQL 470
>gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans
DMS010]
gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans
DMS010]
Length = 479
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/466 (40%), Positives = 284/466 (60%), Gaps = 9/466 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYET G D DRP QFAGVR D I + +CKP+ DYLP P+A +TG+TPQ
Sbjct: 7 HDYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALVTGLTPQL 66
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A ++G+ EAEF ++IH + P TC +GYN++RFDD ++R +RNFYD+Y W +GNS
Sbjct: 67 AEKEGLNEAEFIKQIHDELAAPGTCGVGYNSLRFDDEFTRFTLFRNFYDAYAREWQSGNS 126
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++R A P+GI WP+R+DG SF+L+DL ANGIEH AHDA ADVYAT+ +
Sbjct: 127 RWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIEHSGAHDALADVYATIEM 186
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+ +PKL++Y+++ R K L L+++ P+VHVS M+ TAL+ P+A P
Sbjct: 187 ARLIKNAQPKLYDYVFERRRKQTLAPLLNLNERKPVVHVSRMYPGEYCGTALVVPLAKDP 246
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
+ +I +L D + +LD+ L +RLFT +L +G +K +H+NKCP+++P
Sbjct: 247 NNNNGIIVYDLRHDPKDLIELDAETLRERLFTPTADLPEGATRPALKTLHINKCPVVVPE 306
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY-DGFF 365
+ ER ID ++L +L L ++ AI+ P D D+ LY GFF
Sbjct: 307 NTLDDAAAERLQIDRTAHYQHLDMLNTAQGLTEKLNAIFTAPTYDEIDDPDASLYGGGFF 366
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+D D++ MD I P L TL++PF D RLPEL FRYRARN+P +L+++E++ W+ +R+
Sbjct: 367 SDNDKRKMDVIRNADPAMLPTLSVPFEDPRLPELLFRYRARNWPESLNQEEQEQWVLYRQ 426
Query: 426 KMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
L +E ++ L S + +E ++ ++ L +Y Q
Sbjct: 427 HRLGNQAADKVLNVERFETALAE-SRQQDLNEEQKAVLEQLEQYAQ 471
>gi|289663122|ref|ZP_06484703.1| exonuclease I [Xanthomonas campestris pv. vasculorum NCPPB702]
Length = 481
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 282/470 (60%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+G+ EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + F+R G+DH+ L LR+ L ++ + +Y + +++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D+ ++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRLAHPDDANKQALLDQL 470
>gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01]
gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01]
Length = 481
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/431 (42%), Positives = 269/431 (62%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DRP Q AG+R D +I +C+P+DD LP P A +
Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI PQ+ + G+ E EF R+H S P TC GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGIDPQRLQQLGLDEGEFMTRVHAALSTPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP +DG S KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWPE-EDGRVSLKLERLTQANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L L+RE++P+L+++LY R+K R + I+ + P++H+SG F A+R A +
Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQ--RVMDQIRLLQPMLHISGRFSAARHYLAPV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D DLD+ L RL+T ++L +G VPVP+K +H+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQADPTPLLDLDAEVLRSRLYTRREDLAEGEVPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R +D C N+ +LR L +D+ IY + ++S D +
Sbjct: 298 CPVVAPLSVLRDTDRQRLQLDWSHCERNVEMLRDAQPLWQDKLTDIYREESFAASSDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P+ L+ PF D RLPEL FRYRARNFP +LS E Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRSAQPQSLANDKWPFDDARLPELLFRYRARNFPDSLSPDEGQ 417
Query: 419 DWLEHRKKMLT 429
W++ ++ L+
Sbjct: 418 RWVDFCRQRLS 428
>gi|166711560|ref|ZP_02242767.1| exonuclease I [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 481
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/470 (42%), Positives = 282/470 (60%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA ANG+ +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANGVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIVMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL++ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYSRAADLPEGERRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + FER G+D L L + L ++ + +Y + +++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDRDAVLAKAARLHEMGPELAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQL 470
>gi|92115139|ref|YP_575067.1| exonuclease I [Chromohalobacter salexigens DSM 3043]
gi|91798229|gb|ABE60368.1| Exodeoxyribonuclease I subunit C [Chromohalobacter salexigens DSM
3043]
Length = 495
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/432 (43%), Positives = 266/432 (61%), Gaps = 12/432 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG D DRPAQFA +R D + + F+CKPADD+LP P+A ITGIT
Sbjct: 10 FLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A R G+ E EF+ RIH SVP TC +GYN +RFDD SR++FYRNF D Y W N
Sbjct: 70 PQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFIDPYSREWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDL+DV+R +A PDGI+WP+R+DGA SF+L+DL ANGIEH AHDA ADV AT
Sbjct: 130 GNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAHDALADVRAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L L++ + +LFEYL R+K + +++DIQ P++HVS + ASR +AL+ P+A
Sbjct: 190 IELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRGCSALVVPLA 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
HP + VI +LS D +++ Q+ +R+F S DEL +G +P+K +H+NK P++
Sbjct: 250 EHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKVIHINKSPVI 309
Query: 304 MP------IDYCKKEHF----ERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
MP +D ++ + R G+D C + L+ ++ + ++ + +
Sbjct: 310 MPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEVFAEGPGAPP 369
Query: 354 QDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
D D LY GFF+ DR+ M R L+ + F D RL E+ FR RARN+P TL
Sbjct: 370 SDPDLMLYSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFRLRARNYPDTL 429
Query: 413 SEKEKQDWLEHR 424
S +E+ W +R
Sbjct: 430 SSEEQAQWEAYR 441
>gi|307825107|ref|ZP_07655328.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
gi|307733855|gb|EFO04711.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
Length = 501
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/472 (41%), Positives = 285/472 (60%), Gaps = 14/472 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F +DYETFG D D+P QFAG+R D + ++ V +CKPA+D LP PEA IT
Sbjct: 4 TQTFYWHDYETFGTDPQRDKPVQFAGIRTDFDFNVVDDPLVVYCKPAEDCLPHPEACLIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A + GV EAEF R IH+ + PNTC +GYN++RFDD +RN YRNFYD Y
Sbjct: 64 GITPQLAEQKGVCEAEFIRLIHEQLAQPNTCTLGYNSLRFDDEVTRNCLYRNFYDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDL+DV+RA A PDGI WP ++G SF+L L N I H AHDA +DV
Sbjct: 124 WQNGNSRWDLIDVVRATRALRPDGIVWPVNEEGGPSFRLDQLTRVNNIAHEAAHDALSDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YATLA+ L+++ +PKL+++L +R K + L+ + + P+VHVSG + A ++ A++
Sbjct: 184 YATLAITKLVKQAQPKLYQFLLRHRVKGEALNLLQLGSFKPVVHVSGKYPAVKNCLAVVL 243
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+ HP + +I +LS D L ++ +R+FT+ +L +G+ +P+K VH+NKC
Sbjct: 244 PICKHPTNANGIIVYDLSVDPEPMLGLAVEEIQQRIFTATADLPEGVARIPLKTVHINKC 303
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
P+L P+ + E +R ID C N+ ++ L + A+++ + Y D D +
Sbjct: 304 PVLAPVSVIRPEDAQRLEIDLALCHANIDKIKAAVGLSENLAAVFSGQAYVVQDSDPDLE 363
Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
+Y GFF++ D++ M +I PEQL+ F+D RL E+ FRYRARN+P TL+ E +
Sbjct: 364 IYSGGFFSENDKKQMIKIRSMQPEQLTKSVFKFTDSRLSEMLFRYRARNYPETLNTDELR 423
Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEG-LINALYEY 463
W E LT + +++Y ++L LS DE K +I+AL +Y
Sbjct: 424 RWNEFCVNRLTGRQAGGGIVLDDYFSRLAELS----RDENKNTKIIDALEDY 471
>gi|330966612|gb|EGH66872.1| exonuclease I [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 431
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 267/431 (61%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K +++K I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQKHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+
Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESREVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSTAEQH 417
Query: 419 DWLEHRKKMLT 429
W + ++ L+
Sbjct: 418 RWQDFCRQRLS 428
>gi|319760584|ref|YP_004124522.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
gi|318039298|gb|ADV33848.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
Length = 491
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/456 (41%), Positives = 289/456 (63%), Gaps = 16/456 (3%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F IYDYETFG + ALDRPAQFAG+RVD + I E+FFC+ DYLP+PE+V TGI
Sbjct: 9 NFFIYDYETFGLNPALDRPAQFAGIRVDDKLCPIAKKEIFFCQIPHDYLPNPESVLTTGI 68
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ L+ G+ E+EF+ RI F+ PNTCI+GYNNI FDD ++R+ FYRNF D Y W+++
Sbjct: 69 TPQYTLQYGLTESEFAYRIFNIFNKPNTCIVGYNNINFDDEFTRHTFYRNFCDPYLWAYN 128
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+GNSRWDLL ++RA Y+ P+ I WP + SF+L DL AN IEH+N HDA +DVYA
Sbjct: 129 HGNSRWDLLPILRAYYSLYPEKIYWPINNKNKISFRLIDLTYANHIEHLNVHDAMSDVYA 188
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN-TALIAP 242
TL ++ L ++ P F++LY++R K+QL+K+I+ + PL+ +S + +N +AP
Sbjct: 189 TLEIMKLTQKTHPYFFQFLYNHRTKDQLKKIINFDFIDPLIFISNTINDTYNNFIKFLAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCP 301
++WHP K+ +I +L+ + +L+ +L + L+ L L +P++ + LN CP
Sbjct: 249 ISWHPNNKNILIAYDLNSKPDLLLNLNINKLYQNLYQGTQNLSDLFKQIPLQLIKLNSCP 308
Query: 302 ILMPIDYCKKEHFERWGID----HKRCLENLTLLRQQTN---LRDRFKAIYNK------- 347
IL+PI KKE+ + ++ CL+NL ++ N L+++ K Y
Sbjct: 309 ILIPIHLIKKENIFYYKNSLFSYYQYCLKNLNFIQTNINHTYLKNKIKTFYTTIESYFKL 368
Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARN 407
T VD+QLY FF DRQ++++I T +QLS + + +D RL LFF Y+ARN
Sbjct: 369 KQTYQKVHVDNQLYFKFFNFSDRQLINKIRNTNIQQLSKIKINSTDTRLKLLFFFYKARN 428
Query: 408 FPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSL 443
FP++L+ KE++ WL++++ +L +S+ + Y + +L
Sbjct: 429 FPYSLNVKEQKSWLDYKRLLLQQSKFQNYLTNIDNL 464
>gi|190575052|ref|YP_001972897.1| exonuclease I [Stenotrophomonas maltophilia K279a]
gi|190012974|emb|CAQ46606.1| putative exodeoxyribonuclease I [Stenotrophomonas maltophilia
K279a]
Length = 479
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/473 (40%), Positives = 291/473 (61%), Gaps = 8/473 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R +QFA +R D +I++ FF +PADD LP P A +
Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y
Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R + A PDGIQWP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ + L ++ +P+L++Y R+K + L+D+ M P++H+S + ASR A +
Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + VI +L G++ +L + +A+RL+ EL +G+ VP+KEVHLNK
Sbjct: 241 LPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + + R G+D + LR L ++ + +YN+P ++ DVD+
Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420
Query: 419 DWLEHRKK------MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W ++R++ L + +Y+ +L +L+ E D ++ L+ +L ++ Q
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDTRRQALLQSLRDWGQ 473
>gi|213970280|ref|ZP_03398410.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
gi|301382938|ref|ZP_07231356.1| exonuclease I [Pseudomonas syringae pv. tomato Max13]
gi|302063791|ref|ZP_07255332.1| exonuclease I [Pseudomonas syringae pv. tomato K40]
gi|302133521|ref|ZP_07259511.1| exonuclease I [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213924952|gb|EEB58517.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
gi|331018014|gb|EGH98070.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 476
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 267/431 (61%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417
Query: 419 DWLEHRKKMLT 429
W + +K L+
Sbjct: 418 RWQDFCRKRLS 428
>gi|330877835|gb|EGH11984.1| exonuclease I [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 476
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/431 (43%), Positives = 268/431 (62%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+
Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSENREVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAEEQH 417
Query: 419 DWLEHRKKMLT 429
W + ++ L+
Sbjct: 418 RWQDFCRQRLS 428
>gi|289628502|ref|ZP_06461456.1| exonuclease I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289648244|ref|ZP_06479587.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 2250]
gi|320325491|gb|EFW81553.1| exonuclease I [Pseudomonas syringae pv. glycinea str. B076]
gi|320327221|gb|EFW83235.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|330868768|gb|EGH03477.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330880763|gb|EGH14912.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|330987779|gb|EGH85882.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 476
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 270/431 (62%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLT 429
W + ++ L+
Sbjct: 418 RWQDFCQQRLS 428
>gi|331009925|gb|EGH89981.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 434
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 271/431 (62%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D + T L + + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLT 429
W + ++ L+
Sbjct: 418 RWQDFCQQRLS 428
>gi|71737440|ref|YP_276156.1| exonuclease I [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71557993|gb|AAZ37204.1| exodeoxyribonuclease I [Pseudomonas syringae pv. phaseolicola
1448A]
Length = 476
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 270/431 (62%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLSEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLT 429
W + ++ L+
Sbjct: 418 RWQDFCQQRLS 428
>gi|298488609|ref|ZP_07006639.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|298156950|gb|EFH98040.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
Length = 437
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 270/431 (62%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLT 429
W + ++ L+
Sbjct: 418 RWQDFCQQRLS 428
>gi|28871453|ref|NP_794072.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28854704|gb|AAO57767.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 476
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/431 (43%), Positives = 267/431 (61%), Gaps = 5/431 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D LK G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417
Query: 419 DWLEHRKKMLT 429
W + ++ L+
Sbjct: 418 RWQDFCRQRLS 428
>gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25]
gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25]
Length = 475
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/422 (45%), Positives = 266/422 (63%), Gaps = 6/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I + +C+P+DD LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILPHPVACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI+WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDVVRTAYALRPEGIEWPQQ-DGRVTLKLERLTEANGIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL IREK+PKL+E+L+ R+K R + ++ + P+VH+SG F A R ++
Sbjct: 179 VRATIALARRIREKQPKLYEWLFQLRSKQ--RVMDQVRLLQPMVHISGRFSAERHYLGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + DLD+ L +RL+T + L +G +PVP+K VH+N+
Sbjct: 237 LPLAWHPRNRNALIVCDLGLDPQGLLDLDADTLRQRLYTRREALAEGELPVPLKLVHINR 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLEN-LTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P++ + E ER +D E L L Q RD+ AIY + ++S D +
Sbjct: 297 CPVVAPLNVLRAEDRERLHLDMNIYQERALRLTDAQEVWRDKLAAIYAEEDFAASADPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 357 QLYDGFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFRYRARNFPDTLNSEEQQ 416
Query: 419 DW 420
W
Sbjct: 417 RW 418
>gi|221066347|ref|ZP_03542452.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
gi|220711370|gb|EED66738.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
Length = 479
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/481 (40%), Positives = 287/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL++GV E EF+ I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQRALQEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLTDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA PDGIQWP+++DG SFKL+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPDGIQWPTKEDGTPSFKLEDLARANGLLHEQAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+AL LIREK+P+LF++ + K+ + + + ++ P +HV+GM +R
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
A++ P+A HP K+ VI +L+ D + L RLFT EL +G+ +PIK +
Sbjct: 241 LAVMWPLATHPTNKNEVICWDLAADPTELSGISIEDLRLRLFTRQAELPEGVSRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + E+WG+D + + + + R ++ ++KA++ +
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMRHAAMARDLPDMSAQWKAVFTR-EAGEPL 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E+Q W +HR L + E+ + SLS DE E ++ LY+Y ++P
Sbjct: 420 GEQQRWEQHRAACLIEGQGGARTAEQMFAMIDSLS--EAADERAEEILGELYDYADAMVP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|330950132|gb|EGH50392.1| exonuclease I [Pseudomonas syringae Cit 7]
Length = 476
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/422 (44%), Positives = 262/422 (62%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I + C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRSDRALQMAGIRTDTDLNEIAAPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++Y + R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYFFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + D+ A+Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSEHREVWHDKLAAVYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 481
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 280/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + FER G+D L +R+ L ++ + +Y + +++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQL 470
>gi|219870303|ref|YP_002474678.1| exonuclease I [Haemophilus parasuis SH0165]
gi|219690507|gb|ACL31730.1| exonuclease I [Haemophilus parasuis SH0165]
Length = 457
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/417 (46%), Positives = 267/417 (64%), Gaps = 6/417 (1%)
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGITPQ + G+ E EF+ RIH FS PNTC++GYNNIR+DD +R F+RNF+D Y
Sbjct: 1 MVTGITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPY 60
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+SW NGNSRWDLLDV+RA YA P+GI+W D+G SFKL++L ANGI H NAHDA
Sbjct: 61 EYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAM 120
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
ADVYAT+A+ LI++K+PKLF++ R K L ++ID+ MTPLVHVSGM G R NTA
Sbjct: 121 ADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTA 180
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVH 296
+ P+AWHP +++VI C+LSG++ + S L +RL+T EL +GL VP+K VH
Sbjct: 181 WVVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKAELEAQGLYTVPLKLVH 240
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYT-SSSQ 354
+NKCPIL P E+ R GID CLENL L+ Q NL R++ I+++ +S
Sbjct: 241 INKCPILAPAKTLLPENATRLGIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSN 300
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
++++ LYDGFF D+ M + PE+L+ L FSD R+ L F YRAR++ TL+
Sbjct: 301 NIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPRIEPLLFHYRARHYAETLTR 360
Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY-LQWVIPK 470
E+ W ++ + L ++ E ++ + LS +Y + K L+ L Y Q + PK
Sbjct: 361 AEQVRWQKYCYQQL-EAKAEAFEQAVDLLSAQYHDNPDKIKLLTDLTAYAAQLMQPK 416
>gi|254482823|ref|ZP_05096060.1| Exonuclease C-terminal domain family protein [marine gamma
proteobacterium HTCC2148]
gi|214036904|gb|EEB77574.1| Exonuclease C-terminal domain family protein [marine gamma
proteobacterium HTCC2148]
Length = 460
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/438 (43%), Positives = 266/438 (60%), Gaps = 15/438 (3%)
Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
QFAG+R D I V + +PA+D+LP P+A +TGITPQKAL +G+ EAEF R IH
Sbjct: 2 QFAGLRTDADLNPIGEPLVIYSRPANDFLPHPQACLVTGITPQKALAEGLPEAEFIRLIH 61
Query: 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
+ P TC +GYN++RFDD SR YRNFYD Y W NGNSRWD++D++RA YA P
Sbjct: 62 AELAAPGTCGVGYNSLRFDDEVSRYTLYRNFYDPYGREWQNGNSRWDIIDMVRACYALRP 121
Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203
+GI+WP R+DG SF+L+ L ANGI H AHDA +DV+AT+A+ LI+ K+P+L++Y+
Sbjct: 122 EGIEWPLREDGQPSFRLEALTAANGIAHEAAHDALSDVHATIAMARLIKTKQPRLYDYVL 181
Query: 204 DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263
+R+K + L+D+ M P++HVSGMFGA R N LI P+A HP K+ VI +L D
Sbjct: 182 KHRDKRSVSTLLDLDAMKPVLHVSGMFGAVRHNIGLIVPLAMHPTNKNEVICYDLMTDPA 241
Query: 264 VFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCPILMPIDYCKKEHFERWGIDHK 322
+ + L+T DEL P +K VH+NKCPIL+ E R GI +
Sbjct: 242 MLMQQSPEETRTLLYTRADELPEGTERPGLKSVHINKCPILVTAKMADPETAARLGISGE 301
Query: 323 RCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFFADVDRQIMDRI 376
+C +L LR+ + +AI++ D D LY GFF D+++MD++
Sbjct: 302 QCRAHLAALREYRGRDSQGFVQKIQAIFSGRQFDEITDPDRMLYSGGFFGATDKRLMDQV 361
Query: 377 LRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR---- 432
++ E+L++ PF D RL E+ FRYRARN+P TLS +E W E+R + LT
Sbjct: 362 RESSAEELASATFPFEDGRLTEMLFRYRARNYPQTLSGEELALWEEYRFQRLTEPDAGSS 421
Query: 433 --IEEYKNKLQSL--SGE 446
+EEY+ +Q+L SGE
Sbjct: 422 ICMEEYQELIQTLVTSGE 439
>gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp]
gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp]
Length = 481
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/424 (43%), Positives = 265/424 (62%), Gaps = 5/424 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DRP Q AG+R D +I +C+P+DD LP P A +
Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI PQ+ + G+ E EF R+H S P TC GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGIDPQRLQQLGLDEGEFVTRVHAELSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP +++G S KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWP-QEEGRVSLKLERLTQANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L L+RE++P+L+++LY R+K R + I+ + PL+HVSG F A+R A +
Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQ--RVMDQIRLLQPLLHVSGRFSAARHYLAPV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +LD+ L RL+T ++L + PVP+K +H+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQADPAPLLELDADTLRARLYTRREDLAEHEAPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R +D C N L+ L +D+ IY + ++S D +
Sbjct: 298 CPVVAPLSVLRDADRQRLQLDWSVCERNAERLKAAQALWQDKLPTIYREEAFAASTDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P+ L++ N PF D RLPEL FRYRARNFP +LS E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRNAQPQALASQNWPFDDARLPELLFRYRARNFPDSLSPTEQQ 417
Query: 419 DWLE 422
W+E
Sbjct: 418 RWME 421
>gi|66047247|ref|YP_237088.1| exonuclease I [Pseudomonas syringae pv. syringae B728a]
gi|63257954|gb|AAY39050.1| Exodeoxyribonuclease I [Pseudomonas syringae pv. syringae B728a]
Length = 476
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/422 (44%), Positives = 262/422 (62%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALSDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + + AIY K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166]
Length = 477
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/422 (43%), Positives = 261/422 (61%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT YD+ET G + DRP Q AG+R + E+I +C+P DD LP P A +
Sbjct: 1 MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F +H+ S P TC GYN++RFDD +R YRNFYD Y
Sbjct: 61 TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI WP DDG + KL+ L+ ANG+EH+NAHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPE-DDGRVTLKLERLSAANGLEHLNAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L LIRE++P+L+EYL++ R K+ + + + + + PLVHVSG F A+R +++
Sbjct: 180 VRATIGLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + R + L +RL+T DEL +G +PVP+K VH+NK
Sbjct: 238 LPLAWHPRNRNALIVCDLQAEARPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP+L P+ ++ +R +D C E LR+Q ++ + +Y + D +
Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF + DR++ DRI AP +L+ F D RL EL FRYRARNFP LS +E+
Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAEERV 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
Length = 481
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 281/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE F+ +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL+EY R+K L+D+ M P++H+S + A+R A +
Sbjct: 181 VYATIGMARRFQQHQPKLWEYALRLRDKRFAATLLDVIAMQPVLHISQRYPAARMCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + ++ F+R GIDH L LR+ L ++ + +Y + + D
Sbjct: 301 SPALVAWQHLREADFQRLGIDHDAVLAKAARLRELGPELAEKVRQVYGNERAAAPAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R ++++ ++ L + D K+ L++ L
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLDQFHAQIADLRLAHPDDATKQALLDQL 470
>gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501]
gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501]
Length = 477
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/422 (43%), Positives = 262/422 (62%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT YD+ET G + DRP Q AG+R + E+I +C+P DD LP P A +
Sbjct: 1 MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F +H+ S P TC GYN++RFDD +R YRNFYD Y
Sbjct: 61 TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI WP DDG + KL+ L+ ANG+EH+NAHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPE-DDGRVTLKLERLSAANGLEHLNAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT++L LIRE++P+L+EYL++ R K+ + + + + + PLVHVSG F A+R +++
Sbjct: 180 VRATISLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L ++R + L +RL+T DEL +G +PVP+K VH+NK
Sbjct: 238 LPLAWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP+L P+ ++ +R +D C E LR+Q ++ + +Y + D +
Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF + DR++ DRI AP +L+ F D RL EL FRYRARNFP LS E+
Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAVERV 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|88707066|ref|ZP_01104762.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
gi|88698716|gb|EAQ95839.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
Length = 482
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 265/430 (61%), Gaps = 8/430 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F +DYETFG D A DRP+QFAG+R D I V + +P DY+P P+A IT
Sbjct: 4 SETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL +GVVEA+F I F P TC +GYN++RFDD +R YRN D Y
Sbjct: 64 GITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ +G SRWDL+DV+R YA P+G+ WP+RDDG SF+L+DL ANG+E AHDA DV
Sbjct: 124 YGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDALVDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL I++K+P+LF++L+ R K ++ L+D P++HVSGMFGA R+N LI
Sbjct: 184 KATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLDPM-AQPVLHVSGMFGARRANLGLIL 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A H + ++ VI +LS D + DL + +L +RL+TS+ +L +G V IK VH+N+C
Sbjct: 243 PLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHINRC 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLL-----RQQTNLRDRFKAIYNKPYTSSSQD 355
P+L+P ER G+D C NL L R LRD+ +A+ D
Sbjct: 303 PVLLPEKMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAVSELSGREPETD 362
Query: 356 VDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D LY GF DR+ +DR+L PE L+T + F D RL E+ FRYRARN+P TL++
Sbjct: 363 PDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPETLND 422
Query: 415 KEKQDWLEHR 424
+E+ W E+R
Sbjct: 423 EERARWEEYR 432
>gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 481
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 279/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T ITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + FER G+D L +R+ L ++ + +Y + +++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQL 470
>gi|302188463|ref|ZP_07265136.1| exonuclease I [Pseudomonas syringae pv. syringae 642]
Length = 476
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/422 (44%), Positives = 262/422 (62%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L ++ + D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSERREVWHDKLATVYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1]
Length = 477
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 272/429 (63%), Gaps = 19/429 (4%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIQWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR--------QQTNLRDRFKAIYNKPYTS 351
CP++ P+ + +R G+D LTLL+ QQ +++ + IY K S
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLD-------LTLLQSRGEQLANQQAQWQEKLEHIYGKDEFS 350
Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
S+D + QLY+GF D DR++ +++ P QLS + F D RLPEL FRYRARNFP T
Sbjct: 351 PSEDPEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPET 410
Query: 412 LSEKEKQDW 420
L+ +E+Q W
Sbjct: 411 LTGEERQRW 419
>gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 502
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 279/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 22 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 81
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T ITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 82 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 142 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 201
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 202 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 261
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 262 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 321
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + FER G+D L +R+ L ++ + +Y + +++ D
Sbjct: 322 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 381
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 382 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 441
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 442 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQL 491
>gi|330973535|gb|EGH73601.1| exonuclease I [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 476
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/422 (44%), Positives = 261/422 (61%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + + AIY K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|119946086|ref|YP_943766.1| exodeoxyribonuclease I [Psychromonas ingrahamii 37]
gi|119864690|gb|ABM04167.1| Exodeoxyribonuclease I subunit C [Psychromonas ingrahamii 37]
Length = 486
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/463 (40%), Positives = 281/463 (60%), Gaps = 4/463 (0%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG + DRPAQFAG+R D I + ++C+P +DYLP+PEA ITGITPQ+
Sbjct: 22 HDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLITGITPQR 81
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
AL+ G+VE+EF I+Q FS NTC++GYNNIRFDD +R YRNF D Y+ W NG S
Sbjct: 82 ALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQREWKNGCS 141
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++RA YA P+GI WP ++ A SF+L+ L NG+ H AHDA +DVYAT+A+
Sbjct: 142 RWDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKENGLAHQQAHDAMSDVYATIAM 201
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LI+E PKL++Y + R KN + + + + TP+VHVSGMF A + + + P+ HP
Sbjct: 202 AKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHVSGMFPALQGCASYVMPITQHP 261
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLNKCPILMPI 306
K++VI +L+ D+ L Q+ L+T S D +G+ IK +H+NKCPI+ P
Sbjct: 262 SNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKCPIIAPA 321
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQLYD-GF 364
+E ++ GID K+C +L L Q L ++ + ++ + S+ ++ V+ LY GF
Sbjct: 322 KTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFIQETPSTENKSVEEMLYSGGF 381
Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHR 424
+ D+ + + + + L F D RL L + YRARN P +L E++ W HR
Sbjct: 382 LSAADKALSEEVCNSTWPALGNKEFNFEDDRLGILLWHYRARNAPDSLDVAEQEKWARHR 441
Query: 425 KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+ L + E Y KL++L+ E + + K L+ LY+YL ++
Sbjct: 442 QNYLLENS-EAYIEKLEALALENQSNPEKIELLKQLYDYLNYL 483
>gi|297183623|gb|ADI19749.1| hypothetical protein [uncultured gamma proteobacterium EB000_37F04]
Length = 480
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/422 (46%), Positives = 253/422 (59%), Gaps = 7/422 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYET G D DRP QFAG+R D + + + +P +D LP P AV +TGITPQ+
Sbjct: 10 HDYETSGADPTQDRPWQFAGIRTDAELNIVGKPLTLYAQPTEDRLPHPAAVRVTGITPQE 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A GV EA F RI + PNTC GYN+IRFDD +R +RN D Y W NGNS
Sbjct: 70 AYEKGVTEATFISRILAELAKPNTCTAGYNSIRFDDEVTRFTLWRNLRDPYAREWQNGNS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDLLDV+RA +A SP+G++WP RDDG TSF+L+DL ANGIEH AHDA ADV AT+ +
Sbjct: 130 RWDLLDVVRAFWALSPNGLEWPQRDDGLTSFRLEDLTAANGIEHGAAHDALADVIATIEM 189
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
+++ +LF LY R+K + LIDI + P+V+VSG+FGA+R N ALI P+AWHP
Sbjct: 190 AKRLKQSDARLFTTLYANRSKRAVSALIDIPRLKPIVYVSGIFGAARHNLALIVPLAWHP 249
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLNKCPILMPI 306
K VI +L+G + D +L + LF + KG V P+ V LN+ P+L+P
Sbjct: 250 DNKSEVICADLAGSTE-YLDQPVAELRESLFAPASARSKGAVRPPLTAVRLNRAPVLLPA 308
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD-----RFKAIYNKPYTSSSQDVDSQLY 361
D+ E ER G+D +L LR + RF+ ++ D D LY
Sbjct: 309 DWLAGEAAERLGLDGDHHRAHLAALRAARAANEAAFVARFQELWRDRAFPPRTDPDQMLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGF D DR + +IL+ P L+T + PFSD RLPEL FRYRARNFP +LS E + W
Sbjct: 369 DGFINDADRALCQQILQQEPATLATQSWPFSDPRLPELLFRYRARNFPDSLSAGEGEQWR 428
Query: 422 EH 423
EH
Sbjct: 429 EH 430
>gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1]
gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1]
Length = 477
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/438 (42%), Positives = 276/438 (63%), Gaps = 19/438 (4%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR--------QQTNLRDRFKAIYNKPYTS 351
CP++ P+ + +R G+D LTLL+ QQ +++ + IY K +
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLD-------LTLLQSRGEQLANQQAQWQEKLEHIYGKDEFA 350
Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
S+D + QLY+GF D DR++ +++ P QLS F D RLPEL FRYRARNFP T
Sbjct: 351 PSEDPEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPET 410
Query: 412 LSEKEKQDWLEHRKKMLT 429
L+ +E+Q W + ++ L+
Sbjct: 411 LTPEERQRWYDFCQQRLS 428
>gi|254786919|ref|YP_003074348.1| exonuclease I [Teredinibacter turnerae T7901]
gi|237686146|gb|ACR13410.1| exodeoxyribonuclease I [Teredinibacter turnerae T7901]
Length = 478
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/465 (41%), Positives = 285/465 (61%), Gaps = 8/465 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYET+G + A+DRP+QFAGVR D I V +C+P +D P P+AV +TGI+
Sbjct: 4 FYWHDYETWGANPAVDRPSQFAGVRTDENLNIISDPLVIYCQPPEDIWPQPQAVMVTGIS 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A G+ E EF RIH+ + P TC +GYN++RFDD +R +RN++D Y W N
Sbjct: 64 PQIARDKGLPEHEFIARIHREMAEPQTCTVGYNSLRFDDEVTRYALFRNYFDPYEREWRN 123
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD++D++R YA P+GI+WP +G SFKL++L ANGI H AHDA +DV AT
Sbjct: 124 GNSRWDIIDMVRLTYALRPEGIEWPLV-EGRPSFKLENLTQANGIAHQAAHDAFSDVEAT 182
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL LI+EK+P+L++Y+ DY K +L +LID+Q+ PL+HVS F A +AL+AP+A
Sbjct: 183 IALAKLIKEKQPQLYQYVRDYSGKRKLAELIDVQSRKPLLHVSSRFSAEHGCSALVAPLA 242
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
HP K++VI +LS D + D + ++ +RL+ + D+L +G+ +P+K VHLNKCPIL
Sbjct: 243 MHPVNKNAVIVFDLSVDPQPLIDASAEEVLQRLYVAADDLPEGVERIPLKLVHLNKCPIL 302
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDG 363
+ R ID ++ L Q +L+ + A++++ QD + QLY+G
Sbjct: 303 ATPKLLDETAATRLKIDKSLSEQHWQKL-QCADLKSKLTAVFSQNDFPPRQDPEQQLYNG 361
Query: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
F D D++ ++ Q+ N F D RL + RY+ARNFP TLS++E +W EH
Sbjct: 362 FIGDADKRTSVQLRTATAAQIQQHNFVFEDARLSAMVLRYKARNFPETLSDEEAAEWSEH 421
Query: 424 RKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+ L E+++ + +L E++G GK L++AL +Y
Sbjct: 422 VRLRLMDGGDGCLSYAEFQSTVANLRCEHEGSPGKLALLDALEDY 466
>gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1]
gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1]
Length = 477
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 271/429 (63%), Gaps = 19/429 (4%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ +DYET G + DRP Q AGVR D +I+ +C+P+DD LP P A +
Sbjct: 1 MSSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF +++ + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA PDGIQWP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPDGIQWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHHETLPLLRESAEILRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR--------QQTNLRDRFKAIYNKPYTS 351
CP+L P+ + +R G+D LTLL+ QQ +D+ + IY K +
Sbjct: 298 CPVLAPLSVLRPADQQRLGLD-------LTLLQSRGEQLANQQAQWQDKLEHIYGKDEFA 350
Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
S+D + QLY+GF D DR++ +++ P QLS + F D RLPEL FRYRARNFP T
Sbjct: 351 PSEDPEQQLYEGFIGDRDRRLCEQVRALEPAQLSRGHWMFDDPRLPELLFRYRARNFPET 410
Query: 412 LSEKEKQDW 420
L+ +E Q W
Sbjct: 411 LTSEELQRW 419
>gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440]
gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440]
Length = 477
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 271/429 (63%), Gaps = 19/429 (4%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR--------QQTNLRDRFKAIYNKPYTS 351
CP++ P+ + +R G+D LTLL+ QQ +++ + IY K +
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLD-------LTLLQSRGEQLANQQAQWQEKLEHIYGKDEFA 350
Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
S+D + QLY+GF D DR++ +++ P QLS F D RLPEL FRYRARNFP T
Sbjct: 351 PSEDPEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPET 410
Query: 412 LSEKEKQDW 420
L+ +E+Q W
Sbjct: 411 LTGEERQRW 419
>gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
Length = 482
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 279/470 (59%), Gaps = 8/470 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D+ET G D A DRP QFAG+R D ++ I + +CK A+D LP+P+A +TGITPQ
Sbjct: 12 FDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLLTGITPQD 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A R+G+ EAEF I + S P TC +GYN +RFDD R FYRNF D Y W N S
Sbjct: 72 ANREGLCEAEFMAEIEKELSQPGTCALGYNTLRFDDEVVRYGFYRNFIDPYAREWQNKCS 131
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D++R YA PDGI+WP D+G S KL+ L ANG+ H AHDA +DVY T+A+
Sbjct: 132 RWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKANGLAHEQAHDALSDVYGTIAI 191
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
LIR+ +PKLF+Y R+K++L++ ID M P +H+SGMFG + A +AP+A HP
Sbjct: 192 AKLIRDTQPKLFDYYAKMRHKSELQQFIDPYRMKPFLHISGMFGLDKKFAAFVAPLAPHP 251
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPID 307
K+ +I +L D L ++ +R+F++ +EL L +P+K +HLN+ P + P
Sbjct: 252 SNKNGIIVYDLMEDATPLVTLTVEEIRQRVFSTTEELGELTRLPLKVIHLNRAPAVAPAT 311
Query: 308 YCK-KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFF 365
+ K + ER +D C NL++L+ L + ++ + +D D+ LY GFF
Sbjct: 312 FLKAADVVERLALDGDVCRTNLSILKSTQELVAKLSKVFEQEERRIDKDPDTMLYSGGFF 371
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ D+Q M+ I T E L + + F DRRLPE+F RY RN+P LSE+++++W E+R+
Sbjct: 372 SREDKQRMEEIRSTPIEALGEIEMAFDDRRLPEMFMRYLGRNYPDQLSEQQREEWEEYRQ 431
Query: 426 KMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
L + ++ + +L L+ + + K ++ L +Y Q + P
Sbjct: 432 TRLLNADGGGTIHMDAFFARLNELAQDEELTASKRLMLQDLSDYAQSIYP 481
>gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306]
gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306]
Length = 481
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/470 (42%), Positives = 281/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++HVS + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAAALLDVIAMQPVLHVSQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + FER G+DH + LR L ++ + +Y + ++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L + R +E+Y ++ L G + D K+ L++ L
Sbjct: 421 QERWNVYRRQRLLQDRGLGEVTLEQYHAQIADLRGAHPDDATKQALLDQL 470
>gi|239994498|ref|ZP_04715022.1| exodeoxyribonuclease I [Alteromonas macleodii ATCC 27126]
Length = 476
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/469 (40%), Positives = 274/469 (58%), Gaps = 8/469 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +D+ETFG D P QFA VR D I A+DYLP PEA +TGIT
Sbjct: 6 FLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVIGKPINIMSAIANDYLPHPEACLVTGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ +RDG EA+F+ RI+Q S PNTC +G+N+IRFDD SR +FYRNFYD Y W N
Sbjct: 66 PQQTIRDGSNEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWRN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD++D+ RA YA PDGI WP R+DGA SFKL+ L AN I H NAHDA +DVYAT
Sbjct: 126 GNSRWDIIDLARACYALRPDGINWPRREDGAPSFKLEALTAANNIGHENAHDALSDVYAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL LI+EK+P+LF+Y R+K + + ID+ + L+H+S AS+ + PVA
Sbjct: 186 IALAKLIKEKQPRLFDYALSLRSKQTVMQQIDLTKPSVLLHISSKLPASQGCCTWVMPVA 245
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKCPIL 303
HP ++ I +LS D+ + ++ + L+ D + P +K +H+N+ P +
Sbjct: 246 KHPTNNNAFIAIDLSHDIDSLVNDTPEEIRQALYAPSDTFDDALERPGLKLIHVNRSPFI 305
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD- 362
+++ R G+D +RCL+N +L L + +Y+ S D+D LY
Sbjct: 306 TTAKAMTEDNAARLGLDRERCLDNYKVLASMPELATKIVDVYDDDIQSGELDIDHALYSG 365
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GF D DR+ +R++ P+ L+TL+ L + FRYRARN+P+TL+ E W
Sbjct: 366 GFLNDEDRRWCERVIEAQPDDLATLSEKTQHEGLRKQLFRYRARNYPNTLTADEMTRWQH 425
Query: 423 HRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
HR+ LT S +E Y +L+SL+ E+ + K+ ++ ALY+Y +
Sbjct: 426 HRQARLTDSAFHGSITLENYMMRLESLAHEHSDNPEKQAILRALYQYAE 474
>gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
Length = 475
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/422 (44%), Positives = 261/422 (61%), Gaps = 6/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I +C+P DD LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPGVLDEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI+WP + DG + KL+ L AN I+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDVVRTAYALRPEGIEWPQQ-DGRVTLKLERLTAANAIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL L+REK+P+L+++L+ R+K R + ++ + P+VH+SG F A R ++
Sbjct: 179 VRATIALARLVREKQPRLYDWLFQLRSKQ--RVMDQVRLLQPMVHISGRFSAERHYLGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + D D+ L +RL+T D+L +G +PVP+K VH+N+
Sbjct: 237 LPLAWHPRNRNALIVCDLGLDPQGLLDTDAETLRQRLYTRRDDLAEGELPVPLKLVHVNR 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKR-CLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E ER +D L L Q RD+ AIY + +++ D +
Sbjct: 297 CPVVAPLSVLRAEDRERLQLDMAVYQARALRLTDAQELWRDKLAAIYAQEEFAANADPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL +E+Q
Sbjct: 357 QLYDGFIGDRDRRLCEQVRMAEPSQLARAQWPFDDHRLPELLFRYRARNFPDTLDSEEQQ 416
Query: 419 DW 420
W
Sbjct: 417 RW 418
>gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 481
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/470 (42%), Positives = 280/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +P+L++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPRLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + FER G+DH + LR L ++ + +Y + ++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L G + D K+ L++ L
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRGAHPEDATKQALLDQL 470
>gi|299529972|ref|ZP_07043399.1| exonuclease I [Comamonas testosteroni S44]
gi|298721952|gb|EFI62882.1| exonuclease I [Comamonas testosteroni S44]
Length = 479
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/481 (39%), Positives = 288/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +GV E EF+ I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA P+GIQWP+++DG SF+L+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+AL LIREK+P+LF++ + K+ + + + ++ P +HV+GM +R
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
++ P+A HP K+ VI +L+ D + +L RLFT EL +G+ +PIK +
Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVSRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + E+WG+D + +++ + R ++ ++K+++ +
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKSVFTR-EAGEPL 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E+Q W +HR L + E+ + + +LS DE E ++ LY+Y ++P
Sbjct: 420 DEQQRWEQHRAACLIEGQGGARTAEQMFSMIDALSESV--DERGEEILGDLYDYGSNLVP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|332141096|ref|YP_004426834.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
gi|327551118|gb|AEA97836.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
Length = 478
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 276/472 (58%), Gaps = 8/472 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ +D+ETFG D P QFA VR D + A+DYLP PEA +T
Sbjct: 5 TPTFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+ +RDG EA+F+ +I+ S PNTC +G+N+IRFDD SR +FYRNFYD Y
Sbjct: 65 GITPQQTIRDGSNEADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSRE 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD++DV RA YA PDGI WP R+DG+ SF+L+ L AN I H NAHDA DV
Sbjct: 125 WRNGNSRWDIIDVARACYALRPDGINWPLREDGSPSFRLEALTAANNIGHDNAHDALNDV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT++L LI+EK+P+LF+Y RNK+ + + ID+ + L+H+S AS+ +
Sbjct: 185 YATISLAKLIKEKQPRLFDYALSLRNKHSVMQQIDLSKPSVLLHISSKLPASQGCCTWVM 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKC 300
P+A HP ++ I +LS D+ + + ++ + L+ D P +K +H+N+
Sbjct: 245 PIAKHPTNSNAFIVIDLSHDIDSVLNDSADEIKQALYAPSDTYDDARERPGLKLIHVNRS 304
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + +++ ER G+D +RCL+N L +L + AIY + SS D+D L
Sbjct: 305 PFITTAKAMTEDNAERLGLDRERCLDNYKKLASTPDLVSKIVAIYEEERHSSELDIDHAL 364
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GF +D DR+ + ++ PE L+T L +L FRYRARN+P+TLS E
Sbjct: 365 YSGGFLSDEDRRWCENVINAKPEDLATFGDKTQHEGLKKLLFRYRARNYPNTLSADEMTK 424
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W HR+ LT S +E Y +L+SL+ E+ + K+ ++ ALY+Y +
Sbjct: 425 WQYHRQARLTDSDFHGSITLETYMMRLESLAHEHSDNPEKQAILRALYQYAE 476
>gi|68346412|gb|AAY94018.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf-5]
Length = 497
Score = 368 bits (945), Expect = e-99, Method: Compositional matrix adjust.
Identities = 179/416 (43%), Positives = 260/416 (62%), Gaps = 5/416 (1%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YDYET G + DRP Q AG+R D +I+ +C+P+DD LP P A ITGITP +
Sbjct: 29 YDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGITPGR 88
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ EA+F R+H+ + P TC +GYN +RFDD +R YRNF+D Y W GNS
Sbjct: 89 LAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNS 148
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+DV+R YA P GI WP + G S KL+ L ANGI+H AHDA +DV AT+AL
Sbjct: 149 RWDLIDVVRTAYALRPQGIVWPE-EQGQVSLKLERLTAANGIDHGQAHDALSDVRATIAL 207
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L+R+K+P+L+++L+ R+K R + ++ + P+VH+SG F A+R ++ P+AWHP
Sbjct: 208 ARLVRDKQPRLYDWLFQLRSKQ--RVMDQVRLLQPMVHISGRFSAARHYIGVVLPLAWHP 265
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLNKCPILMPI 306
R ++++I C+L D + +LD+ L +RL+T D L+G +PVP+K +H+N+CP++ P+
Sbjct: 266 RNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPVVAPL 325
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ E +R +D + L + Q RD+ IY ++S D + QLYDGF
Sbjct: 326 SVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLYDGFI 385
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
D DR++ +++ P L+ PF D RLPEL FRYRARNFP TL++ E++ WL
Sbjct: 386 GDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERWL 441
>gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas fluorescens Pf-5]
Length = 475
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/423 (43%), Positives = 264/423 (62%), Gaps = 6/423 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D +I+ +C+P+DD LP P A I
Sbjct: 1 MTSLF-WYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F R+H+ + P TC +GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P GI WP + G S KL+ L ANGI+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDVVRTAYALRPQGIVWPE-EQGQVSLKLERLTAANGIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL L+R+K+P+L+++L+ R+K R + ++ + P+VH+SG F A+R ++
Sbjct: 179 VRATIALARLVRDKQPRLYDWLFQLRSKQ--RVMDQVRLLQPMVHISGRFSAARHYIGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + +LD+ L +RL+T D L+G +PVP+K +H+N+
Sbjct: 237 LPLAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINR 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D + L + Q RD+ IY ++S D +
Sbjct: 297 CPVVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P L+ PF D RLPEL FRYRARNFP TL++ E++
Sbjct: 357 QLYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQE 416
Query: 419 DWL 421
WL
Sbjct: 417 RWL 419
>gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1]
gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1]
Length = 484
Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/473 (39%), Positives = 273/473 (57%), Gaps = 8/473 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +D+ET G D A DRP QFAG+R D + I +F+C+ A+D LP PEA +TGI+
Sbjct: 9 FFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A R+G+ EAEF + + S P TC +GYN IRFDD R FYRNF D Y W N
Sbjct: 69 PQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPYTREWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
SRWD++D++R YA P+GI WP +DG S KL+ L ANGI H AHDA +DVY T
Sbjct: 129 NCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDVYGT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LIR K+PKLF Y + R K++L++ ID+ + P +H+SGMFG +++ A + P+A
Sbjct: 189 IEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNYAAFVVPIA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
HP K+ VI +L D + DL ++ R+FT +EL L +P+K +H NK P +
Sbjct: 249 PHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIHYNKSPAVA 308
Query: 305 PIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD- 362
P + K + +R +D C NL +++ L + ++ + +D D LY
Sbjct: 309 PATFLKDVDVVKRLALDGSVCRHNLAIIKGHAGLAAKLSDVFMQEDRPIHKDPDVMLYSG 368
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+ DR M++I T QLS L + F DRRLPE+ RY RN+P LSE+++ +W E
Sbjct: 369 GFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQLSEQQQFEWEE 428
Query: 423 HRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+R+ L +E+Y +L ++ ++ ++ L +Y Q + P
Sbjct: 429 YRQVRLLEKDGGGSINMEQYFERLNLIAQTPDLSPAEQVMLQDLADYAQSIYP 481
>gi|90022039|ref|YP_527866.1| exonuclease I [Saccharophagus degradans 2-40]
gi|89951639|gb|ABD81654.1| Exodeoxyribonuclease I subunit C [Saccharophagus degradans 2-40]
Length = 485
Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/478 (38%), Positives = 288/478 (60%), Gaps = 16/478 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYET+G + A+DRP+QFAGVR D I V +CKP +D P+PEA +
Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TG+TPQ+ L GV E EF ++IH+ + P TC +GYN+IRFDD +R YRN++D Y
Sbjct: 61 TGLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI+WP DG SF+L++L NGI H +AHDA +D
Sbjct: 121 EWRNGNSRWDIIDMVRLCYALRPEGIEWPVV-DGKPSFRLENLTKVNGIVHASAHDAYSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L L+REK+P L+E++ + R K + KL+D+ + P++H+S F + LI
Sbjct: 180 VEATIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLI 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A+HP K++VI NL+ D + DL + ++ R+FT+ +L +G+ +P+K +HLNK
Sbjct: 240 APLAYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNK 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CPIL+ ++ R GID +C ++ + L Q+ ++ ++ + ++ S D +
Sbjct: 300 CPILLTPKILDEQAQARLGIDKAQCEKHWSQL-QRMDITEKLQQVFATNEFEGSLDPERM 358
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGF D D+ +M + + +LS N FSD+RL ++ RY+ARNFP L++ E+ +
Sbjct: 359 LYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSERAE 418
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDE--------GKEGLINALYEYL 464
W E + L + E +KL ++ E + + K +I AL +Y+
Sbjct: 419 WREFVSQRLKDGGDGVLSLSELNDKLVNIRAELEQQQDQSPEQIAKKLDIIKALEQYV 476
>gi|309780540|ref|ZP_07675287.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
gi|308920695|gb|EFP66345.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
Length = 479
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 191/479 (39%), Positives = 289/479 (60%), Gaps = 13/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 3 VTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 63 TGITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 123 EWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSD 182
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASRSNTAL 239
V AT+AL LIR +P+LF++ R K+ R + +I + PL+H+SGM+G R A+
Sbjct: 183 VRATIALARLIRNAQPRLFDFCLALRKKD--RVVAEIGDAPRPLLHISGMYGVERGCMAV 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLN 298
+ P+ HP K+ +I +L+ D D+D + +R+FT + D +G +PIK +H+N
Sbjct: 241 VWPLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRTADLAEGTTRLPIKSIHIN 300
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K PI++ + + ERWGID + + + ++R+ ++ +Y + + +DVD
Sbjct: 301 KSPIVISNMKTLQPAQAERWGIDFATIERHAAIAQGAPDMRETWRQVYAREL-EAIEDVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E
Sbjct: 360 QNLYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEY 419
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYK--GDEGKEGLINALYEYLQWVIP 469
+ W + R + L R E + +LQ L E + GD + ++ LY+Y Q ++P
Sbjct: 420 ELWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478
>gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004]
gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
8004]
Length = 481
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 278/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + A+R A +
Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P++ HPR VI +L GD L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLSRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + + F+R G+D LR+ L ++ + +Y + ++ D
Sbjct: 301 APALVAWQHLRSDDFQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L + F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPGELGAMEARFRDPRLIELLFRYRARNWPQTLSPHE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
Q W ++R++ L R +E++ ++ L + D K+ L++ L
Sbjct: 421 HQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQL 470
>gi|330981526|gb|EGH79629.1| exonuclease I [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 476
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/422 (44%), Positives = 259/422 (61%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H A DA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAPDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D + L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L ++ + D+ A+Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|84387297|ref|ZP_00990317.1| exonuclease I [Vibrio splendidus 12B01]
gi|84377746|gb|EAP94609.1| exonuclease I [Vibrio splendidus 12B01]
Length = 351
Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 177/343 (51%), Positives = 233/343 (67%), Gaps = 1/343 (0%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT IT
Sbjct: 9 YFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRIT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQKA G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW N
Sbjct: 69 PQKAASQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQN 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDVMRA++A PDGI WP ++G SFKL+ L++ANGIEH NAHDA ADV AT
Sbjct: 129 GNSRWDLLDVMRAVHALRPDGINWPPNEEGYPSFKLEHLSVANGIEHENAHDAMADVIAT 188
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ L ++ +PK+F+YLY+ R+K +L L+DI NMTPL+HVSGMFG + T+ I P+A
Sbjct: 189 IELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIVPMA 248
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
WHP +++VI +L+ D +LD+ +L RL+T EL + +PVPIK V LNKCPIL
Sbjct: 249 WHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPIL 308
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346
P E+ E GID ++CL+NL LLR+ +R++ +Y+
Sbjct: 309 APAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYS 351
>gi|241664639|ref|YP_002982999.1| exonuclease I [Ralstonia pickettii 12D]
gi|240866666|gb|ACS64327.1| Exodeoxyribonuclease I [Ralstonia pickettii 12D]
Length = 479
Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 285/477 (59%), Gaps = 11/477 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + IT
Sbjct: 4 TPSFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 64 GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +DV
Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIR +P+LF++ R K+++ I PL+H+SGM+G R A++
Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVAAEIG-DAPRPLLHISGMYGVERGCMAVVW 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLNKC 300
P+ HP K+ +I +L+ D D+D + +R+FT + D +G +PIK +H+NK
Sbjct: 243 PLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRAADLAEGTTRLPIKSIHINKS 302
Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
PI++ + + ERWGID + + + ++R+ ++ +Y + +DVD
Sbjct: 303 PIVISNMKTLQPGQAERWGIDFATIERHAAIAQGAPDMRETWRQVYAREL-EPIEDVDQN 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 362 LYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYEL 421
Query: 420 WLEHRKKMLTRSR-----IEEYKNKLQSLSGEYK--GDEGKEGLINALYEYLQWVIP 469
W + R + L R E + +LQ L E + GD + ++ LY+Y Q ++P
Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478
>gi|254524666|ref|ZP_05136721.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
gi|219722257|gb|EED40782.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
Length = 479
Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 187/428 (43%), Positives = 273/428 (63%), Gaps = 2/428 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R +Q+A +R D +IE+ FF +PADD LP P A +
Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIETPVSFFVRPADDLLPSPMATLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+A+ +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y
Sbjct: 61 TGITPQQAMAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFIRYGLFRNFHDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R + A PDGIQWP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ + L ++ +P+L+EY R+K + L+DI + P++HVS + ASR A +
Sbjct: 181 VRATIGMARLFKQSQPRLWEYALKLRDKRFVGGLLDIAALKPVLHVSMRYPASRLCAAPV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + VI +L GD+ +L + +A+RL+ EL +G+ VP+KEVH+NK
Sbjct: 241 LPLAVHPTINNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHMNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + + ER G+D + LR L ++ + +YN+P T+++ DVD+
Sbjct: 301 VPALIAWNHLRADDHERLGLDVAAIEAKVERLRPFAAQLAEKARQVYNQPRTATAADVDA 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPGSLAPAERQ 420
Query: 419 DWLEHRKK 426
W ++R++
Sbjct: 421 RWQDYRRQ 428
>gi|264679055|ref|YP_003278962.1| exonuclease-like protein [Comamonas testosteroni CNB-2]
gi|262209568|gb|ACY33666.1| Exonuclease-like protein [Comamonas testosteroni CNB-2]
Length = 479
Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 190/481 (39%), Positives = 285/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +GV E EF+ I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA P+GIQWP+++DG SF+L+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+AL LIREK+P+LF++ + K+ + + + ++ P +HV+GM +R
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
++ P+A HP K+ VI +L+ D + +L RLFT EL +G+ +PIK +
Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVTRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + E+WG+D + +++ + R ++ ++KA++ +
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKAVFTR-EAGEPL 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELAWRYRARNFPQTLDA 419
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E W +HR L + E+ + +LS DE E ++ LY+Y ++P
Sbjct: 420 GELLRWEQHRAACLIEGQGGARTAEQMFTMIDALSESV--DERGEEILGDLYDYGSNLVP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619]
gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619]
Length = 478
Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 183/425 (43%), Positives = 266/425 (62%), Gaps = 11/425 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AGVR D + +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EAEF R+H ++P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQQLASQGLGEAEFMTRVHAQLALPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR K+PKL+E+L+ R+K+++ + I + + PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIRHKQPKLYEWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + + +RL+T +EL G +P+P+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQQETLPLLRESAEVIRERLYTRREELSDGQLPIPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGID----HKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
CP++ P+ + +R GID R E L QQ + + + IY K S+D
Sbjct: 298 CPVVAPLSVLRAADQQRLGIDLALVQSRAEE---LANQQNAWQHKLEHIYGKEDFVPSED 354
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
+ QLY+GF D DR++ +++ P QL + F D R+PEL FRYRARNFP TL+ +
Sbjct: 355 PEQQLYEGFLGDRDRRLCEQVRTLDPAQLGQGHWMFDDPRMPELLFRYRARNFPETLNSE 414
Query: 416 EKQDW 420
E+Q W
Sbjct: 415 ERQRW 419
>gi|332993520|gb|AEF03575.1| exodeoxyribonuclease I [Alteromonas sp. SN2]
Length = 477
Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 273/471 (57%), Gaps = 11/471 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YD+ETFG D P QFA +R D + I A+DYLP PEA +TGIT
Sbjct: 6 FLWYDFETFGTSGQKDLPCQFAAIRTDLDFNIIGKPINIMSAIANDYLPHPEACLVTGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ LRDG EA+F++RI+Q S PNTC +G+N+IRFDD +R +FYRNFYD Y W N
Sbjct: 66 PQQTLRDGSNEADFAKRIYQEMSTPNTCSLGFNSIRFDDEVARFLFYRNFYDPYSREWRN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD++D+ RA YA PDGI WP+R+DG SFKL+ L N I H NAHDA +DV+AT
Sbjct: 126 GNSRWDIIDLARACYALRPDGINWPTREDGTPSFKLEHLTKENDISHENAHDALSDVHAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL LI+EK+P+LFEY Y R+K+ + D+ + L+H+S AS+ I P+A
Sbjct: 186 IALAKLIKEKQPRLFEYAYSLRSKHNVANQFDLTKPSVLLHISAKLPASQGCCTWIMPIA 245
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD---ELKGLVPVPIKEVHLNKCP 301
HP +++I +LS + + ++ +L+ ++ + L P +K +H+N+ P
Sbjct: 246 KHPTNSNAIIAVDLSKPIDSLLNDSPEEIKAKLYARYEPGSDANSLRP-GLKLIHINRSP 304
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ +++ R G+D CLEN +L Q+ +L + +Y QD+D LY
Sbjct: 305 FVTTAKAMTEDNAHRLGLDRDTCLENYRILAQERDLGMKLSNVYENDTDDKEQDIDHALY 364
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GF + DR D++L ++PEQL L L L FRYRARNFP TL+ E W
Sbjct: 365 SGGFLSTEDRHWCDKVLASSPEQLGALAEETQHVGLRALLFRYRARNFPSTLTYDETLKW 424
Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
HR+ LT +E Y + L+ L+ E+ + K+ ++ AL++Y +
Sbjct: 425 QRHRQARLTDPTSSASITLEHYMSTLERLAHEHVDNPEKQAILRALFQYAE 475
>gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100]
gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris]
Length = 481
Score = 365 bits (937), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + A+R A +
Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + + +R G+D LR+ L ++ + +Y + ++ D
Sbjct: 301 APALVAWQHLRSDDLQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPAELGALEARFRDPRLIELLFRYRARNWPQTLSPDE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
Q W +R++ L R +E++ ++ L + D K+ L++ L
Sbjct: 421 HQRWNAYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQL 470
>gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 481
Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 279/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + F+R G+DH + LR L ++ + +Y + ++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHSDDATKQALLDQL 470
>gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 477
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 182/422 (43%), Positives = 269/422 (63%), Gaps = 6/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I+ +C+P+DD LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPTCLAEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++RA YA P GI WP ++DG + KL+ L ANGI+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDLVRAAYALRPQGIVWP-QEDGRVTLKLERLTAANGIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L+++L+ R+K ++ + I+ + P+VH+SG F A+R+ ++
Sbjct: 179 VRATIALARLIRQQQPRLYDWLFQLRSKQKV--MDQIRLLQPMVHISGRFSAARNYIGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNK 299
P+AWHP+ ++++I C+L D + D D+ L +RL+T +E L+G +PVP+K +H+NK
Sbjct: 237 LPLAWHPKNRNALIVCDLHLDPQGLLDHDAESLRQRLYTRREELLEGELPVPLKLIHINK 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLEN-LTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D + + L L Q +D+ +AIY + ++S+D +
Sbjct: 297 CPVIAPLSVLRAEDQQRLELDMEGYQQRALRLTDAQKVWQDKLQAIYGREDFTASEDPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY GF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL+ +E
Sbjct: 357 QLYAGFLGDRDRRLCEQVRMADPLQLTQERWPFDDERLPELLFRYRARNFPDTLNPEEHG 416
Query: 419 DW 420
W
Sbjct: 417 RW 418
>gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
Length = 481
Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 279/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + + F+R G+DH + LR L ++ + +Y + ++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W +R++ L R +E+Y ++ L + D K+ L++ L
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHPDDATKQALLDQL 470
>gi|83746387|ref|ZP_00943439.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
gi|207744660|ref|YP_002261052.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
gi|83726928|gb|EAP74054.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
gi|206596067|emb|CAQ62994.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
Length = 489
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/478 (39%), Positives = 283/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 193 VRATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINK 311
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + ++R+ ++ +Y + +DVD
Sbjct: 312 APIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYVREL-DPIEDVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF A+ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEDEYE 430
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQWVIP 469
W + R + L E + +LQ L E GD + ++ LY+Y Q ++P
Sbjct: 431 QWEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLYDYAQQIVP 488
>gi|187930471|ref|YP_001900958.1| exonuclease I [Ralstonia pickettii 12J]
gi|187727361|gb|ACD28526.1| Exodeoxyribonuclease I [Ralstonia pickettii 12J]
Length = 479
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 286/479 (59%), Gaps = 13/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 3 VTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 63 TGITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 123 EWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSD 182
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASRSNTAL 239
V AT+AL LIR +P+LF++ R K+ R + +I + PL+H+SGM+G R A+
Sbjct: 183 VRATIALARLIRNAQPRLFDFCLALRKKD--RVVAEIGDAPRPLLHISGMYGVERGCMAV 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLN 298
+ P+ HP K+ +I +L+ D +D + +R+FT + D +G +PIK +H+N
Sbjct: 241 VWPLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHIN 300
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K PI++ + + ERWGID + + + ++R+ ++ +Y + +DVD
Sbjct: 301 KSPIVISNMKTLQPAQAERWGIDFAMIERHAAIAQGAPDMRETWRQVYAREL-EPIEDVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E
Sbjct: 360 QNLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEY 419
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQWVIP 469
+ W + R + L R E + +LQ L E GD + ++ LY+Y Q ++P
Sbjct: 420 ERWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVP 478
>gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48]
gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48]
Length = 476
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 179/422 (42%), Positives = 264/422 (62%), Gaps = 5/422 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ +DYET G + DRP Q AGVR D +IE+ +C+P+DD LP P A +
Sbjct: 1 MSSSIFWHDYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQQLASQGLCEAEFMTRVHTELARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L LIR+++PKL+++L+ R+K+++ + + + + PLVHVSG F A R+ ++
Sbjct: 180 VRATIGLARLIRDRQPKLYDWLFQLRSKHKVMEQVRL--LQPLVHVSGRFSAERNYIGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + L +RL+T +++ +G +PVP+K VH+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLGQDSAPLLKESAQVLRQRLYTRREDMAEGELPVPLKLVHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLT-LLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + + +R GID + L QQ RD+ I+ + + ++D +
Sbjct: 298 CPVVAPLSVIRAQDQQRLGIDMSTLQSHADHLANQQATWRDKLDIIFEEEAFAPTEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P QL + F D RLPEL FRYRARNF TL E+E
Sbjct: 358 QLYDGFIGDRDRRLCEQVRGVDPAQLGQGHWMFDDPRLPELLFRYRARNFADTLDEQELA 417
Query: 419 DW 420
W
Sbjct: 418 RW 419
>gi|329895211|ref|ZP_08270875.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
gi|328922449|gb|EGG29791.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
Length = 480
Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/435 (43%), Positives = 258/435 (59%), Gaps = 6/435 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ F +DYETFG A DRP QFAG+R D I V + +P DYLP+P AV +
Sbjct: 1 MSDTFYWHDYETFGASPAKDRPCQFAGLRTDANLNVIGDPLVVYSRPTPDYLPNPMAVLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL+ G+ E EF RIH S P TC +GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGITPQEALQKGLSEREFITRIHAELSQPLTCGVGYNSLRFDDEVTRYTLYRNFFDPYGR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ +GNSRWDL+D++RA YA P+GI+WP DDG S KL+ L ANGIEH AHDA D
Sbjct: 121 EYQDGNSRWDLIDLVRASYALRPEGIEWPMSDDGFMSAKLERLTAANGIEHAGAHDALVD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L LI+ K+PKLFEY R K + + + P++HVSGMFGA +N L+
Sbjct: 181 VKATIELAKLIKTKQPKLFEYYLGLRFKRAAQDQLALGQWRPILHVSGMFGARHANIGLV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
P HP K+ +I +LS D + +L +RL+T D+L G P +K +H+N+
Sbjct: 241 VPAIQHPTNKNEIITIDLSQSPEKLLDYSADELRQRLYTPADQLDGERPA-LKSIHINRA 299
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENL----TLLRQQTN-LRDRFKAIYNKPYTSSSQD 355
P + P E R +D EN+ L++++ N L + +Y + D
Sbjct: 300 PFVAPAKMMTDEVAARANLDLVALRENMKALQALMKERGNELLALLRDVYAHKRVAEPTD 359
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
+ LY GF +D DR++ D+I +P+ L+ + PF DRRL EL FRYRARNFP TLS
Sbjct: 360 PEWDLYGGFLSDGDRRLCDQIKSASPQILARSSFPFEDRRLGELLFRYRARNFPDTLSLD 419
Query: 416 EKQDWLEHRKKMLTR 430
EK W E+ + +TR
Sbjct: 420 EKMQWQEYCFERITR 434
>gi|325983472|ref|YP_004295874.1| exodeoxyribonuclease I [Nitrosomonas sp. AL212]
gi|325532991|gb|ADZ27712.1| Exodeoxyribonuclease I [Nitrosomonas sp. AL212]
Length = 478
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 270/470 (57%), Gaps = 7/470 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT F +DYETFG D DRPAQFAGVR D +I + +CKP D+LP PEA +
Sbjct: 1 MTMTFYWHDYETFGADPRRDRPAQFAGVRTDEALNEIGEPLMIYCKPTRDFLPHPEACLL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A G+ E EF RIH + P TC +GYN++RFDD +R YRNFYD Y
Sbjct: 61 TGITPQLADAQGLPEPEFIARIHAELAQPGTCGVGYNSLRFDDEVTRFTLYRNFYDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWD++D++R YA P GI WP +DG SFKL+DL ANGI H +AHDA +D
Sbjct: 121 EWQQGNSRWDIIDLVRMTYALRPAGITWPQHEDGQPSFKLEDLVAANGIWHESAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V T+AL L+R ++P+LF++L R+K + +D+ P++H + M+ A T+LI
Sbjct: 181 VRVTIALARLLRMQQPRLFDWLLQLRDKRKAAAQLDLITHNPVLHTTRMYPAKTGCTSLI 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ P +S++ +L D +F L++ LA LFT +D+L +G+ +P+K + +NK
Sbjct: 241 MPLIVEPGNNNSILVYDLRHDPEMFLPLNADDLAPLLFTRNDDLPEGMQRLPVKSIKINK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CP L P + E ER +D C + L + R Y SS DVD
Sbjct: 301 CPALAPRNTLDNETAERIALDLDVCYRHWQTLCAMPDFFQRVATAYTSRTFESSSDVDVA 360
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGF + D ++++I +P+QL + F D+RL EL FRYRARN+P TL E +
Sbjct: 361 LYDGFLDNADAALLEQIRAASPQQLGEMQFNFHDKRLSELLFRYRARNWPETLKPAEAER 420
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
W R + LT++ +E+ ++ L K D E +++A+ ++
Sbjct: 421 WELLRLQRLTQADGGGSITFDEFSTQIALLREARKTDGQAEQILDAVEDW 470
>gi|300702669|ref|YP_003744269.1| exodeoxyribonuclease i [Ralstonia solanacearum CFBP2957]
gi|299070330|emb|CBJ41622.1| exodeoxyribonuclease I [Ralstonia solanacearum CFBP2957]
Length = 489
Score = 362 bits (929), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 187/478 (39%), Positives = 283/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 193 VRATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINK 311
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + ++R+ ++ +Y + +DVD
Sbjct: 312 APIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYAREL-DPIEDVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF A+ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLAEDEYE 430
Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQWVIP 469
W + R + L E + +LQ L E GD + ++ L++Y Q ++P
Sbjct: 431 QWEQLRAERLFEGGGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLFDYAQQIVP 488
>gi|15617148|ref|NP_240361.1| exonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
gi|11386767|sp|P57620|EX1_BUCAI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|25403649|pir||G84994 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Buchnera sp.
(strain APS)
gi|10039213|dbj|BAB13247.1| exodeoxyribonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 413
Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 176/408 (43%), Positives = 253/408 (62%), Gaps = 6/408 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 8 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 67
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 68 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 127
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 128 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 187
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 188 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 247
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 248 PIAWHENNSNILIAIDLFKDIKTL-----INMCKKICFDSIFIKNLLDSGVVLLHLNRCP 302
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 303 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 362
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
Y+GFF D++ + I T P L + F D RL LFFRYRARNF
Sbjct: 363 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNF 410
>gi|239815634|ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110]
gi|239802211|gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110]
Length = 479
Score = 362 bits (929), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 196/481 (40%), Positives = 282/481 (58%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ +DYETFG DRP+QFA +R D + +I + +CKPA DYLP PEA I
Sbjct: 1 MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ L G+ E F+ +I + FS P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQLCLERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R YA PDGI+WP ++DG SFKL+DLA ANG+ H +AHDA +D
Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM----TPLVHVSGMFGASRSN 236
V AT+AL LIRE++PKLFE+ + K+++ + + M P +HVSGMF R
Sbjct: 181 VRATIALARLIRERQPKLFEFAFGLHKKDRVASELGLPAMRETARPFLHVSGMFPVERGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
++ P+A HP K+ +I +L+ D +DLD L RLFT +L +G+V +P+K +
Sbjct: 241 LGVMWPLASHPTNKNELIAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVVRLPVKGI 300
Query: 296 HLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
HLNK P+++ + ERW +D L + + R ++ + +Y +P +
Sbjct: 301 HLNKSPMVVGNLRTLAPAMAERWNVDLDAALRHAAIARDLPDMSAIWSQVYARP-KEAVP 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
DVD LY GF + DR+ ++++ +PE+L+ F D RL E+ FRYRARN+P LS
Sbjct: 360 DVDEDLYGGFVGNGDRRRLNQLRALSPEELAKDRTGFDDGRLEEILFRYRARNWPELLSS 419
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W R L + IE +++ +LS DE E ++ ALYEY + + P
Sbjct: 420 EEAERWEALRAARLFKGEGGARTIEMLFSEVDALS--ETADERGEEILGALYEYAEAIAP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|325918073|ref|ZP_08180231.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
35937]
gi|325535696|gb|EGD07534.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
35937]
Length = 481
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 195/470 (41%), Positives = 280/470 (59%), Gaps = 10/470 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q I+ FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVSEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A P+GI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPEGITWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMEPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYN--KPYTSSSQDV 356
P L+ + ++ F+R G+D L LR+ L ++ + +Y + ++ D
Sbjct: 301 SPALVAWHHLREPDFQRLGLDRDAVLAKAARLRELGPALAEKVRQVYGNERAAAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +APE+L L D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPEELGALETRLRDPRLVELLFRYRARNWPQTLSFDE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
++ W ++R+K L +++Y ++ L + D K+ L++ L
Sbjct: 421 QERWNQYRRKRLLEDHGLGEVTLDQYHAQIADLRLAHPDDATKQALLDQL 470
>gi|192360953|ref|YP_001983097.1| exonuclease I [Cellvibrio japonicus Ueda107]
gi|190687118|gb|ACE84796.1| exodeoxyribonuclease I [Cellvibrio japonicus Ueda107]
Length = 497
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 187/437 (42%), Positives = 257/437 (58%), Gaps = 8/437 (1%)
Query: 2 TNHFVIY--DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
T +Y DYET+G A+DRP QFAGVR D + + +PA D LP PEA
Sbjct: 4 TEQITLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACL 63
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ+A GV EA+F IH+ + P TC +GYN+IRFDD +R YRNFYD Y
Sbjct: 64 ITGITPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYE 123
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W NGNSRWDL+DV+R A P+GI WP +DG FKL+ L N I H AHDA +
Sbjct: 124 REWRNGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALS 183
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV+AT+A+ L++ ++PKL++Y + R+K LIDI PL+H+S F + N AL
Sbjct: 184 DVHATIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAAL 243
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+A+HP K+SVI NL+ D +L +L RLFT+ +L +G+ +P+KE+HLN
Sbjct: 244 VLPLAYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHLN 303
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-----LRDRFKAIYNKPYTSSS 353
K P+L+ + R +D C ++L Q T L ++ +Y+ +
Sbjct: 304 KTPMLVTTAMVDETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYSAQDFTGR 363
Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
D + QLY GFF+D D+++M R+ +P+ L+ F D RLPEL FRYRARNFP +L
Sbjct: 364 TDPEQQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPESLD 423
Query: 414 EKEKQDWLEHRKKMLTR 430
E+Q W + LTR
Sbjct: 424 PAEQQRWFDFCCGRLTR 440
>gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille]
gi|151280694|gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille]
Length = 476
Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 276/476 (57%), Gaps = 10/476 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ F+ +DYETFG DRPAQFA +R D + +I + +CKPA+D+LPDP++ IT
Sbjct: 3 THTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ L GV E EF+ I + S T +GYN IRFDD +R +F+RN D Y
Sbjct: 63 GITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWD+LDV+R YA P+GI WP DG SF+L+ L NGI H AHDA +DV
Sbjct: 123 WQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIRE++PKLF++ K+++ I + P +H++GM A R A++
Sbjct: 183 RATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAVVW 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A HP K+ VI +LS D LD+ + R+F+ D L +G+ +PIK +HLNK
Sbjct: 243 PLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLNKS 302
Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
PI++ + E E+WGID L + + ++ ++ ++ +P +++ DVD
Sbjct: 303 PIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAA-DVDED 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + DR+ + + +PE L+ FSD RL E+ +RYRARNFPHTL+E+E+Q
Sbjct: 362 LYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQR 421
Query: 420 WLEHRKKML-----TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
W +HR L IE ++ LS DE E ++ ALY+Y + + P
Sbjct: 422 WEDHRVARLFDGEGGARTIETLFAEIDQLS--ETADERGEEILGALYDYAEAIAPS 475
>gi|331004853|ref|ZP_08328270.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
gi|330421307|gb|EGG95556.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
Length = 476
Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 176/421 (41%), Positives = 257/421 (61%), Gaps = 2/421 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N +DYET+G + D+P+QFAG+R D + V +C+P+ D LP PEA +TG
Sbjct: 2 NTLYWHDYETWGASPSQDKPSQFAGIRTDEDLNIVGEPLVIYCQPSSDCLPQPEACLLTG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKAL++G+ E F +IHQ + TC +GYN+IRFDD +R YRNFYD Y W
Sbjct: 62 ITPQKALKEGLSEPIFFEKIHQQLAQEKTCGVGYNSIRFDDEMTRYGLYRNFYDPYEREW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++R YA P+ + WP+ D G SFKL+ L+ ANG+ H AHDA +DVY
Sbjct: 122 QNGNSRWDIIDMVRLCYALRPETLCWPTNDSGVVSFKLELLSKANGLLHDAAHDALSDVY 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LI++K+P+L++Y Y R+KN+++ L+++ P++HVS F SR L+ P
Sbjct: 182 ATIALAKLIKQKQPELYQYAYSLRDKNKVKALMNVAQRKPILHVSSRFPVSRGCAGLMLP 241
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+A HP K+SVI +LS D +L + ++A+RL+ +L +G +P+KE+H NK P
Sbjct: 242 LAEHPTNKNSVIAYDLSEDPTPLLELSAEEIAERLYVKQADLPEGASRIPLKEIHFNKSP 301
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
++ + + +R GID C + LR ++ + + +++ D + QLY
Sbjct: 302 MVATVKLLDDQSAQRLGIDKSTCEAHWQQLR-AADITSKLQDVFSTQRFPPKHDPEQQLY 360
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGF D+ +M I PE LS + D RL L FRYRAR++P TL+E EKQ W
Sbjct: 361 DGFINSHDKHLMLAIRGAEPETLSHYSSQLKDPRLKALLFRYRARHYPQTLNELEKQQWQ 420
Query: 422 E 422
E
Sbjct: 421 E 421
>gi|27904977|ref|NP_778103.1| exonuclease I [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
gi|32129519|sp|Q89A43|EX1_BUCBP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|27904375|gb|AAO27208.1| exodeoxyribonuclease I [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 481
Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 181/466 (38%), Positives = 285/466 (61%), Gaps = 11/466 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YDYETFG++ ALD+P+QF+ ++ D + I S + FC P+ DYLPDPE+V ITGI+
Sbjct: 11 FLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGIS 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P+ GV E EF+++I+ F +TCIIGYNNI FDD ++RNIFYRNF +SY WSW N
Sbjct: 71 PKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNFLNSYEWSWKN 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD+LD++RA Y P+GI WP +D + S +L D++LAN I H AH+A +DVYAT
Sbjct: 131 GNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHNASSDVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + LI++KKPKLF + + YR K + LID+ ++ P+V++S FG + I P+
Sbjct: 191 MNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISRFFGVVNRYISYIVPIL 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
WHP + ++ +LS D++ + KR + K + + I+ +++N+CPIL+
Sbjct: 251 WHPINSNILVSIDLSQDVQ-----KILNFFKRNSILNVNYKEIFLMGIRFIYVNRCPILI 305
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK----AIYNKPYTSSSQDVDSQL 360
P + + + R I++K NL LLR+ L+ + K +I P + S +VD ++
Sbjct: 306 PTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKKFLCSIAEAPKYNGS-NVDLKM 364
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+ FF+ +D ++ I T P+++ +N D R+ +LF + AR P L EK W
Sbjct: 365 YNSFFSYIDNNVIKNIHSTLPKRIK-INFMKYDNRINQLFILFLARYRPDMLDYSEKYFW 423
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
++ + + + I++Y+NK+ L +YK L+ L+EY+++
Sbjct: 424 IQRYLNIFSYANIQKYENKILKLIVKYKNHVRNVQLLEELFEYVKY 469
>gi|207721998|ref|YP_002252436.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
gi|206587171|emb|CAQ17755.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
Length = 489
Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 186/478 (38%), Positives = 282/478 (58%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 193 VRATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-EAPRPLLHVSGMYGVERGCMAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINK 311
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + ++R+ ++ +Y + +DVD
Sbjct: 312 APIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYAREL-DPIEDVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF A+ DR+ ++ + + EQL+ L+ F+D RL EL FRYRARNFP TL+E E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLSELLFRYRARNFPDTLTEDEYE 430
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEY--KGDEGKEGLINALYEYLQWVIP 469
W + R + L E + +LQ L E GD + ++ L++Y Q ++P
Sbjct: 431 QWEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDTRAQNILQDLFDYAQQIVP 488
>gi|194366373|ref|YP_002028983.1| exonuclease I [Stenotrophomonas maltophilia R551-3]
gi|194349177|gb|ACF52300.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia R551-3]
Length = 479
Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 190/473 (40%), Positives = 287/473 (60%), Gaps = 8/473 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R +Q+A +R D +I++ FF +PADD LP P A +
Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y
Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R + A P+GIQWP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ + L ++ +P+L++Y R+K + L+D+ M P++H+S + ASR A +
Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P++ HP + VI +L GD+ +L + +A+RL+ EL +G VP+KEV LNK
Sbjct: 241 LPLSMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + + R G+D LR L ++ + +YN+P ++ DVD+
Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVADVDA 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q
Sbjct: 361 SLYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDERQ 420
Query: 419 DWLEHRKK------MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
W ++R++ L + +Y+ +L +L+ E D ++ L+ +L ++ Q
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSLRDWGQ 473
>gi|213580552|ref|ZP_03362378.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 342
Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 169/343 (49%), Positives = 243/343 (70%), Gaps = 3/343 (0%)
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+
Sbjct: 1 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAM 60
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP
Sbjct: 61 AQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHP 120
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPID 307
+++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L +
Sbjct: 121 ENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQAN 180
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYDGFF 365
+ E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYDGFF
Sbjct: 181 TLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-ATSDNVDAQLYDGFF 239
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+
Sbjct: 240 SDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRR 299
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 300 QVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 342
>gi|319793918|ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS]
gi|315596381|gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS]
Length = 479
Score = 358 bits (920), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 192/481 (39%), Positives = 285/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ +DYETFG DRP+QFA +R D + +I + +CKPA DYLP PEA I
Sbjct: 1 MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ L G+ E +F+ +I + FS P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQVCLERGIPEHDFAAQIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R YA P+GIQWP ++DG SFKL+DLA ANG+ H +AHDA +D
Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPEGIQWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM----TPLVHVSGMFGASRSN 236
V AT+AL LIR+K+PKLF++ + K+++ + + M P +HVSGMF R
Sbjct: 181 VRATIALARLIRDKQPKLFDFAFGLHKKDRVASELGLPAMRETAKPFLHVSGMFSVERGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
A++ P+A HP K+ ++ +L+ D +DLD L RLFT +L +G++ +P+K +
Sbjct: 241 IAVMWPLASHPTNKNELLAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVLRLPVKGI 300
Query: 296 HLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
HLNK P+++ + ERWGID + + + R ++ + +Y +P ++
Sbjct: 301 HLNKSPMVVGNLRTLAPPMAERWGIDLDTAMRHAAIARDLPDMSAIWSQVYARP-KEATP 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
DVD LY GF + DR+ ++++ + +L+ F D RL E+ FRYRARN+P +L+
Sbjct: 360 DVDEDLYGGFVGNADRRRLNQLRGLSAGELAKDRTGFDDGRLEEIVFRYRARNWPESLAP 419
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W R L IE+ +++ +LS DE E ++ ALYEY + + P
Sbjct: 420 EETERWEALRVARLFHGEGGARTIEQLFSEVDALS--ETADERGEEILGALYEYAEAIAP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans]
gi|133737741|emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA
deoxyribophosphodiesterase) (dRPase) [Herminiimonas
arsenicoxydans]
Length = 477
Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 184/475 (38%), Positives = 278/475 (58%), Gaps = 10/475 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ F+ +DYETFG + DRPAQFA +R D + +I + + +C+PA+D+LPDP++ IT
Sbjct: 3 THTFLWHDYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ L G+ E +F+ +I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 63 GITPQVCLERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWD+LDV+R YA P+GI WP DG +SF+L+ L ANGI H AHDA +DV
Sbjct: 123 WQNACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGIAHEAAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIR+++P+LF++ + K+++ I + P +H++GMF A R ++
Sbjct: 183 RATIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITGMFPAERGCIGIVW 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A HP K+ VI +L+ D LD+ + R+F+ D L +G+ +PIK +HLNK
Sbjct: 243 PLAVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGVSRLPIKSIHLNKS 302
Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
P+++ + E +WG+D L + + ++ ++ ++++P + DVD
Sbjct: 303 PVVINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFHRP-QEGTPDVDED 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + DR+++ + +PE L+ FSD RL ELF+RYRARNFP TLS +E +
Sbjct: 362 LYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRYRARNFPQTLSAEEAER 421
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W EHR L IE ++ LS DE E ++ ALY+Y + + P
Sbjct: 422 WEEHRAARLFNGDGGARTIEGMFAEIDQLS--ETADERGEEILAALYDYAEAIAP 474
>gi|300690052|ref|YP_003751047.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
gi|299077112|emb|CBJ49735.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
Length = 489
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 288/479 (60%), Gaps = 13/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + ++P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPENRFAQAIERELAMPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDGI+WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGIEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASRSNTAL 239
V AT+AL LIR +P+LF++ + R K R L +I + PL+HVSGM+G R A+
Sbjct: 193 VRATIALARLIRNAQPRLFDFCFALRKKE--RVLAEIGDAPRPLLHVSGMYGVERGCLAV 250
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+ WHP K+ ++ +L+ D DL + + +RLFT EL +G +P+K +H+N
Sbjct: 251 VWPLGWHPTNKNELLVWDLACDPAELFDLGAEAIRERLFTRSAELAEGTARLPVKSIHIN 310
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K PI++ + + ERWG+D + + + ++R+ ++ +Y + + DVD
Sbjct: 311 KAPIVIGNLKTLQPAQAERWGVDFATIERHAAVAQGAPDMRETWRQVYARELEPIA-DVD 369
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF ++ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E
Sbjct: 370 QNLYGGFVSNDDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEEEY 429
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
+ W + R + L R + + +++ L + D + ++ LY+Y Q ++P
Sbjct: 430 EQWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488
>gi|161621731|ref|NP_521246.2| exonuclease I [Ralstonia solanacearum GMI1000]
Length = 477
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 189/479 (39%), Positives = 286/479 (59%), Gaps = 13/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 1 MTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 61 TGITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG++H AHDA +D
Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASRSNTAL 239
V AT+AL +R +P+LF++ + R K R L +I + + PL+HVSGM+G R A+
Sbjct: 181 VRATIALARRVRAAQPRLFDFCFALRKKE--RVLAEIGDASRPLLHVSGMYGVERGCLAV 238
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLN 298
+ P+ WHP K+ ++ +L+ D DL + +RLFT S D +G +PIK +H+N
Sbjct: 239 VWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHIN 298
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K PI++ + + ERWGID + + + +LR+ ++ +Y + +DVD
Sbjct: 299 KSPIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYAREL-EPIEDVD 357
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E
Sbjct: 358 QNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEY 417
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
+ W + R + L R + + +++ L + D + ++ LY+Y Q ++P
Sbjct: 418 EQWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 476
>gi|124266553|ref|YP_001020557.1| exonuclease I [Methylibium petroleiphilum PM1]
gi|124259328|gb|ABM94322.1| Exodeoxyribonuclease I subunit C [Methylibium petroleiphilum PM1]
Length = 479
Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 272/479 (56%), Gaps = 11/479 (2%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+ H F +DYETFGR DRPAQFAGVR D + +I + +C+PA D+LPDPE+
Sbjct: 1 MSEHSFYWHDYETFGRWPRRDRPAQFAGVRTDAELNEIGPPLMHYCQPAPDFLPDPESCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI PQ L G+ E F+ I + + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 61 LTGILPQTCLEQGLPEHAFAAAIERELAAPGTVGVGYNTIRFDDEVTRHLFWRNLMDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W NG RWDLLDV+R YA P+GI+WP +DG SFKL+ L ANG+ H AHDA +
Sbjct: 121 REWQNGCGRWDLLDVVRCTYALRPEGIEWPRHEDGRASFKLEHLTAANGLAHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+ L LIR +P+L+++ + K+ + I P +H+SGM+ A R A
Sbjct: 181 DVRATIGLARLIRRHQPRLWDFCFRLHRKDAVMAEIGAGARRPFLHISGMYPAERGCLAA 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+ HP K+ +I +L+ D LD+ + +RLFT ++L +G +PIK +H+N
Sbjct: 241 VWPLGAHPTNKNELIVWDLAADPSELYGLDAAAIRQRLFTKAEDLPEGTTRLPIKSIHIN 300
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDV 356
K PI++ + ERWG D R + + L R + ++ +P + DV
Sbjct: 301 KSPIVIGNLKTLSPAMAERWGYDAARVQRHADIALAHDALPRALWADVFARPAPEQAPDV 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF ++ DR+ ++R+ PE L+ F D RL EL FRYRARNFP TL +E
Sbjct: 361 DEDLYGGFVSNADRRTLERLRGLPPEGLAGQRPSFEDGRLEELLFRYRARNFPDTLDAEE 420
Query: 417 KQDWLEHRKKML-----TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
+ W +HR + L S + + ++ +LS DE + ++ ALY+Y + + P
Sbjct: 421 RAQWEQHRAERLHLGVGGGSSLAAFFERIDALS--ESADERGQDILGALYDYAEQIAPS 477
>gi|90416366|ref|ZP_01224298.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
gi|90332091|gb|EAS47305.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
Length = 478
Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 179/466 (38%), Positives = 269/466 (57%), Gaps = 7/466 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M N F +DYETFG + ++DRP+QFAG+R D I V +C+P D LP P+A +
Sbjct: 1 MDNTFYWHDYETFGINPSIDRPSQFAGLRTDFDLNPIGEPLVIYCQPQPDLLPAPQACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ AL++G+ E F IHQ S NTC +GYN+IRFDD +R YRNFYD Y+
Sbjct: 61 TGITPQHALKEGLAEPAFIEAIHQQMSRANTCSVGYNSIRFDDEVTRYTLYRNFYDPYQR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R A P+GI+WP + G SF+L+DL ANG+ H AHDA +D
Sbjct: 121 EWKNGNSRWDIIDMLRLCRALRPEGIEWPDHEPGRPSFRLEDLTAANGLAHEAAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ L+++K+P+LF+Y R K Q+ ++D++ P H+SGM + AL+
Sbjct: 181 VTATIAMAKLVKDKQPRLFDYALQNRGKKQVAAMLDLKARKPFFHISGMLAKEQLYGALM 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + +I +LS D L+ Q+ R+FT+ +L +G +P+K +H+NK
Sbjct: 241 MPLAQHPTNSNGIICFDLSADPEALVSLNEHQIRDRVFTASADLPEGAERIPLKVIHINK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
P++ +R ID +RC N L +L D+ + ++ + D + Q
Sbjct: 301 APVVTTHKLVDTATAKRLDIDLERCERNWQRL-SSMDLSDKLQLVFREQKFPPKSDAEQQ 359
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + D+ ++D + R S F+D+R +L F YRAR FP +LS +E+Q
Sbjct: 360 LYGGFLPNQDKGLLDDVRRATASDFSQQQFYFADQRYNQLLFSYRARYFPESLSAEEQQT 419
Query: 420 WLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINAL 460
WLE + LT + +++ + L L + + K G++ AL
Sbjct: 420 WLESCRWRLTDEQSGYLTLQQNRRTLDQLLADTSLSDHKRGVLQAL 465
>gi|254517159|ref|ZP_05129217.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
gi|219674664|gb|EED31032.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
Length = 482
Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 189/445 (42%), Positives = 265/445 (59%), Gaps = 13/445 (2%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYETFG D DRPAQFAG+R D I V + KP DY+P P+A ITGITPQ
Sbjct: 10 HDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLITGITPQA 69
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
AL GV EA+F + I F TC +GYN++RFDD +R YRN D Y + +G S
Sbjct: 70 ALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPYAREYGDGRS 129
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDL+D++R YA P+G+ WP RDDG SF+L+DL ANG+ AHDA DV AT+AL
Sbjct: 130 RWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALVDVQATIAL 189
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L++E++P+LF++LY R K ++ L++ + P++HVSGMFGA R+N LI P+A H
Sbjct: 190 ARLLKERQPRLFQWLYQQRFKQAVKPLLEPMSQ-PVLHVSGMFGAQRANLGLILPLAAHH 248
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
+ ++ V+ +LS D + DL + +L + LFT++ +L +G +K VH+N+CP+L+P
Sbjct: 249 QNRNEVMCADLSIDADLLTDLPAAELHRLLFTANADLAEGEQRPGLKSVHINRCPVLLPA 308
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLR-----QQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+R +D + C NL LR LRD+ +++ + D D LY
Sbjct: 309 KMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSVSELSTRAPETDPDRMLY 368
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GF DR+ +DRIL +PE L+ + F D RL E+ FRYRARN+P TLS +E+ W
Sbjct: 369 SGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYPQTLSAEEQLRW 428
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSG 445
E R +RI E + +L G
Sbjct: 429 EEFRF-----NRISEGDGRSLTLEG 448
>gi|17430149|emb|CAD16834.1| putative exodeoxyribonucleaseIprotein [Ralstonia solanacearum
GMI1000]
Length = 489
Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 286/479 (59%), Gaps = 13/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 13 VTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG++H AHDA +D
Sbjct: 133 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT-PLVHVSGMFGASRSNTAL 239
V AT+AL +R +P+LF++ + R K R L +I + + PL+HVSGM+G R A+
Sbjct: 193 VRATIALARRVRAAQPRLFDFCFALRKKE--RVLAEIGDASRPLLHVSGMYGVERGCLAV 250
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLN 298
+ P+ WHP K+ ++ +L+ D DL + +RLFT S D +G +PIK +H+N
Sbjct: 251 VWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHIN 310
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K PI++ + + ERWGID + + + +LR+ ++ +Y + +DVD
Sbjct: 311 KSPIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYAREL-EPIEDVD 369
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E
Sbjct: 370 QNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEY 429
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
+ W + R + L R + + +++ L + D + ++ LY+Y Q ++P
Sbjct: 430 EQWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488
>gi|160898944|ref|YP_001564526.1| exonuclease I [Delftia acidovorans SPH-1]
gi|160364528|gb|ABX36141.1| Exodeoxyribonuclease I [Delftia acidovorans SPH-1]
Length = 479
Score = 356 bits (913), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 184/481 (38%), Positives = 283/481 (58%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D + +I +++C+PA DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ L G+ EA+F+ RI + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQQCLEQGMPEAQFAARIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA P+GI WP ++DG+ SFKL+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLLHEKAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+ L LIR+ +P+LF++ + K+++ + + + + P +HVSGM R
Sbjct: 181 VRATIGLARLIRKVQPRLFDFAFSLHKKDRVLQEMGLPAEPAHARPFLHVSGMIRPERGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
A++ P+A HP K+ +I +L+ D +D L RLF+ +L +G+ +PIK +
Sbjct: 241 IAVMWPLATHPTNKNEIICWDLAQDPSELASIDVDTLRLRLFSRAADLPEGMQRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + +WGID ++C+ + + R ++ ++A++ +P
Sbjct: 301 HVNKSPMVVGSLKTLSAAMAAQWGIDVEQCMGHAAIARDLPDMSALWRAVHQRP-AQEGL 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++ + + ++L+ F D RL EL FRYRARNFP +L+
Sbjct: 360 DADQDLYGGFVGNEDRRRLNHLRSLSAQELALDRTGFDDARLTELLFRYRARNFPASLNP 419
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E+Q WL+H L + E+ + LS DE E ++ ALY+Y + ++P
Sbjct: 420 AERQRWLQHCAACLIEGKGGARTAEQMFAMVDQLS--ETADERGEEILGALYDYAEAIMP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|332531005|ref|ZP_08406927.1| exonuclease I [Hylemonella gracilis ATCC 19624]
gi|332039566|gb|EGI75970.1| exonuclease I [Hylemonella gracilis ATCC 19624]
Length = 488
Score = 355 bits (912), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 196/489 (40%), Positives = 277/489 (56%), Gaps = 21/489 (4%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG + DRP+QFAG+R D +I + +C+PADDYLPDP A +
Sbjct: 1 MALTFFWHDYETFGVNPRRDRPSQFAGIRTDADLNEIGEPVMLYCRPADDYLPDPGACLL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ L GV E EF+ RI + P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQTCLEHGVPEHEFAARIEHELAQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT----SFKLQDLALANGIEHVNAHD 176
W N SRWDLLDV+R A P+GI+WP +G SFKL+ L ANG+ H AHD
Sbjct: 121 EWQNECSRWDLLDVVRLCRALRPEGIEWPMHREGEMKGKPSFKLEHLTAANGLSHEAAHD 180
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGA 232
A +DV AT+AL LIR+K+P+LF++ R K+ + + + P +HVSGMF A
Sbjct: 181 ALSDVRATIALARLIRDKQPRLFDFALALRKKDAVAAELGLPTSQAQARPFLHVSGMFPA 240
Query: 233 SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVP 291
R +L+ P+A HP K+ +I +LS D L + RL+T D+L +G+ +P
Sbjct: 241 ERGCLSLMWPLATHPTNKNELIAWDLSADPAELAHLTVDDIRLRLYTRTDDLPEGVSRLP 300
Query: 292 IKEVHLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
IK VHLNK P+++ + + E +RWG+D L N + R+ ++ + ++ +P
Sbjct: 301 IKSVHLNKSPMVVSNLKTLRPELAQRWGLDLDAALRNAAVARELPDMSALWPQVFQRPAQ 360
Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
+ + DVD LY GF + DR+ + R+ P++L+T F D RL ++ FRYRARNFP
Sbjct: 361 AGTPDVDEDLYGGFVGNEDRRRLARLRALPPQELATSRAGFDDARLGDILFRYRARNFPD 420
Query: 411 TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY---------KGDEGKEGLINALY 461
TL+E E+ WL HR L + L +L E +GDE E ++ ALY
Sbjct: 421 TLNEDEQARWLAHRVARLVEG--ADGARNLDALFAELDRLGQDATEQGDERGEAILEALY 478
Query: 462 EYLQWVIPK 470
Y + + P+
Sbjct: 479 AYAEQIAPE 487
>gi|91788799|ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666]
gi|91698024|gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666]
Length = 480
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 281/482 (58%), Gaps = 15/482 (3%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M H F+ +DYETFG + DRP+QFAG+R D + ++ + +C+PA+DYLPDP +
Sbjct: 1 MAPHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ L G+ E F+ +I Q + P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 ITGITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLDV+R YA P+GI WP+++DG SFKL+DLA ANG+ H AHDA +
Sbjct: 121 REWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRS 235
DV AT+AL LIR+ +PKLF++ K+++ + + Q+ TP +HVSGMF R
Sbjct: 181 DVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERG 240
Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKE 294
A++ P+A HP K+ ++ +L+ D LD L +RLFT S D +G++ +P+K
Sbjct: 241 CLAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKS 300
Query: 295 VHLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
VHLNK P+++ + E +WG+D L N ++ + ++ +P ++
Sbjct: 301 VHLNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRP-KEAA 359
Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
DVD LY GF + DR+ ++++ +P +L+ F D RL EL FRYRARNF TL+
Sbjct: 360 PDVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLT 419
Query: 414 EKEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+E + W HR L ++ ++ +LS DE + ++ ALY+Y + +
Sbjct: 420 PEEAERWEAHRAARLLEGEGGARNVDALFAEIDTLS--ETTDERGQAILGALYDYAEAIA 477
Query: 469 PK 470
P+
Sbjct: 478 PE 479
>gi|213621019|ref|ZP_03373802.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
Length = 275
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 161/264 (60%), Positives = 200/264 (75%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+A
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 251
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDL 268
WHP +++VI +L+GD+ +L
Sbjct: 252 WHPENRNAVIMVDLAGDISPLLEL 275
>gi|319762823|ref|YP_004126760.1| exodeoxyribonuclease i [Alicycliphilus denitrificans BC]
gi|330824902|ref|YP_004388205.1| exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
gi|317117384|gb|ADU99872.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans BC]
gi|329310274|gb|AEB84689.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
Length = 478
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 279/476 (58%), Gaps = 14/476 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG D DRPAQFA +R D Q +I + +C+PA+DYLPDP++ ITGIT
Sbjct: 4 FLWHDYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYCRPANDYLPDPQSCLITGIT 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ L GV E +F+ RI ++P T +GYN IRFDD +R +F+RN D Y W N
Sbjct: 64 PQLCLEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQN 123
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
RWDLLDV+R YA PDGI+WP DG TSF+L++L ANG+ H AHDA +DV AT
Sbjct: 124 QCGRWDLLDVVRLAYALRPDGIEWPVA-DGKTSFRLENLTKANGLAHEAAHDALSDVRAT 182
Query: 185 LALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
+AL L+R + P+LF++ R K+ +LR Q P +HVSGMFGA R A++
Sbjct: 183 IALARLVRARNPRLFDFALGLRKKDRVAAELRLPATAQTARPFLHVSGMFGAERGCLAVM 242
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP K+ ++ +L+ D L + ++ +RLFT +L +G+ +P+K VHLNK
Sbjct: 243 WPLASHPTNKNELLAWDLAHDPAELATLSADEIRQRLFTRAADLPEGVTRLPLKSVHLNK 302
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
P+++ ++ +RWG+D + + R+ ++ + ++ +P DVD
Sbjct: 303 SPMVVGNVNTLTPAVAQRWGLDMAQAARHAEAARRLPDMSAIWAQVFQRP-QEGPVDVDQ 361
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ ++R+ +PE+L+ F D RL EL +RYRARNFP TLS +E +
Sbjct: 362 DLYGGFLGNEDRRRLNRLRALSPEELARERPGFDDERLAELVWRYRARNFPQTLSPEEHE 421
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W HR ML + +L L GE DE E ++ A+Y+Y + + P
Sbjct: 422 RWEAHRVAMLVEGEGGGLTFDALFERLDEL-GEQADDERTEAILGAIYDYAEGIAP 476
>gi|241763393|ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
gi|241367435|gb|EER61746.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
Length = 481
Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 283/482 (58%), Gaps = 14/482 (2%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+ H F+ +DYETFG + DRPAQFA +R D + ++ + +C+PA+DYLPDP++
Sbjct: 1 MSPHTFLWHDYETFGANTRRDRPAQFAAIRTDAELREVGEPLMLYCQPANDYLPDPQSCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ L GV E EF+ RI F+ P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 ITGITPQLCLEKGVPEHEFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLDV+R YA PDGI WP ++DG+ SFKL+ L+ ANG+ H AHDA +
Sbjct: 121 REWQNQCGRWDLLDVVRMTYALRPDGIHWPRKEDGSPSFKLEHLSKANGLAHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASRS 235
DV AT+AL LIR+ P+LF++ K+ +LR P +HVSGMF A R
Sbjct: 181 DVRATIALARLIRQHNPRLFDFALSLHKKDRVAAELRLPATALTARPFLHVSGMFPAERG 240
Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKE 294
A++ P+A HP K+ VI +L+ D R L + ++ R+F+ +L +G+ +P+K
Sbjct: 241 CLAVMWPLASHPTNKNEVIAWDLAHDPRELATLGTDEIRLRMFSRAADLPEGMTRLPVKT 300
Query: 295 VHLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
+HLNK P+++ ++ +RWGID + ++ + R ++ + A++ +P ++
Sbjct: 301 IHLNKSPMVVGNVNTLTPALAQRWGIDLVQAAQHAEVARSLPDMSGIWPAVFARPAEPAA 360
Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
DVD LY GF + DR+ ++ + ++L+ F D RL EL +RYRARNFP TLS
Sbjct: 361 -DVDQDLYGGFVGNSDRRRLNDLRAMDGQKLAAARTGFDDPRLEELVWRYRARNFPTTLS 419
Query: 414 EKEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+E + W HR L + ++ ++ +S E DE + ++ ALY+Y + +
Sbjct: 420 PEEGERWEAHRAACLFDGQGGARTVDRLFTEIDQIS-ETADDERTQEILGALYDYAEHIA 478
Query: 469 PK 470
P+
Sbjct: 479 PE 480
>gi|89900857|ref|YP_523328.1| exonuclease I [Rhodoferax ferrireducens T118]
gi|89345594|gb|ABD69797.1| Exodeoxyribonuclease I subunit C [Rhodoferax ferrireducens T118]
Length = 485
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 277/477 (58%), Gaps = 14/477 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG + DRPAQFA +R D + I + + +C+PA D+LPDP+A ITGIT
Sbjct: 10 FLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ L G+ E +F+ +I Q FS+P T +GYN IRFDD +R +F+RN D Y W N
Sbjct: 70 PQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
RWDLLDV+R YA PDG++WP +G SFKL DL+ ANG+ H AHDA +DV AT
Sbjct: 130 DCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAHDALSDVRAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT----PLVHVSGMFGASRSNTALI 240
+AL LI+ +PKLF++ + K+++ + + P +H+SGMF R AL+
Sbjct: 190 IALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFAPERGCLALM 249
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP K+ ++ +L+ D R +++ Q+ RLFT +L +G+ +P+K +HLNK
Sbjct: 250 WPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRLPVKSIHLNK 309
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
P ++ +RWG++ L N + ++ + A++ +P +++ DVD
Sbjct: 310 SPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVFKRP-AAATPDVDE 368
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ ++ + + ++L++ F D RL EL +RYRARNFP +LS E
Sbjct: 369 DLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNFPQSLSADELA 428
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
W HR L IE+ +L SL+ DE E ++ ALY+Y + + P+
Sbjct: 429 RWEAHRSARLFDGEGGALTIEQLFEELDSLA--ESADERGEAILGALYDYAELIAPQ 483
>gi|121604837|ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ2]
gi|120593806|gb|ABM37245.1| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans
CJ2]
Length = 482
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 188/485 (38%), Positives = 282/485 (58%), Gaps = 21/485 (4%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M +H F+ +DYETFG + DRPAQFAG+R D + +I + +C+PA+DYLPDPE+
Sbjct: 1 MDSHTFLWHDYETFGLNTRRDRPAQFAGIRTDAELNEIGEPLMIYCQPANDYLPDPESCV 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGITPQ L+ GV E F+ RI Q + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 61 LTGITPQHCLQHGVPEHAFAARIEQVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYG 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLDV+R YA PDGI WP ++DG SFKL+DLA ANG+ H AHDA +
Sbjct: 121 REWQNECGRWDLLDVVRMAYALRPDGIVWPLKEDGKPSFKLEDLARANGLLHETAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT----PLVHVSGMFGASRS 235
DV AT+AL L+R +P+LF++ K ++ + + P +HVSGMF A R
Sbjct: 181 DVRATIALARLVRTAQPRLFDFCLGLHKKARVSAELGLPATARMARPFLHVSGMFPAERG 240
Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKE 294
A++ P+A HP K+ V+ +L+ D LD L RLF+ S D +G+ +PIK
Sbjct: 241 CLAVMFPLATHPANKNEVLAWDLAHDPSELPLLDVATLRLRLFSKSADLPEGVQRLPIKS 300
Query: 295 VHLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
VHLNK P+++ + RWG+D ++ L + + ++ + ++ + +
Sbjct: 301 VHLNKSPMVVRNLQTLTPAMAARWGVDTEQALRHAEIAAGLPDMSAVWPEVFRR-AAEAE 359
Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
DVD LY GF + DR+ ++++ + +L+ + F D RL EL FRYRARNFP TL+
Sbjct: 360 PDVDENLYGGFIGNDDRRRLNQLREMSGAELAHSRMGFDDGRLKELVFRYRARNFPETLN 419
Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKG--------DEGKEGLINALYEYLQ 465
++ + W HR +R+ + + +++ + G DE E ++ ALY+Y +
Sbjct: 420 PEDTERWEAHRA-----ARLLDGEGGARNVDALFAGIDALAQTADERGEAILGALYDYAE 474
Query: 466 WVIPK 470
++P+
Sbjct: 475 AIVPE 479
>gi|119505890|ref|ZP_01627954.1| Exonuclease [marine gamma proteobacterium HTCC2080]
gi|119458271|gb|EAW39382.1| Exonuclease [marine gamma proteobacterium HTCC2080]
Length = 483
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 185/461 (40%), Positives = 266/461 (57%), Gaps = 11/461 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F +DYET G +V DRP QFAGVR D+ + I V +C+P+ D L P A+ +T
Sbjct: 4 SESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P KAL +G E F +I + F VP TC +GYN++RFDD +R YRNF+ Y
Sbjct: 64 GISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ SRWDL+DV RAIYA PDGI WP R+DG SF+L+DL ANGI+H NAHDA ADV
Sbjct: 124 FGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALADV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL L+ + +P LF+ LY R K + L++ + P++HVSG FGA R N A++
Sbjct: 184 LATIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLAIVL 243
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A HP K+ VI +L G+ F D S + + LFT + G+ P+K + +N+
Sbjct: 244 PLAVHPTNKNGVICADL-GEAPAFLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQINRA 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-----FKAIYNKPYTSSSQD 355
P+++P + E +R +D + +L R + + + IY + D
Sbjct: 303 PVVLPTTWVSGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAPRSD 362
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D+QLY+GF D +++ I + P+ L++ F DRRLPE+FFRYRARNFP +L
Sbjct: 363 PDTQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFPESLDPD 422
Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGL 456
EK W EH ++ LT ++ + S + + +EGL
Sbjct: 423 EKARWREHCRETLTGKAGPDW----EGFSKQLNEERAREGL 459
>gi|171059394|ref|YP_001791743.1| exonuclease I [Leptothrix cholodnii SP-6]
gi|170776839|gb|ACB34978.1| Exodeoxyribonuclease I [Leptothrix cholodnii SP-6]
Length = 484
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 193/484 (39%), Positives = 277/484 (57%), Gaps = 18/484 (3%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M H F +DYETFGR DRPAQFAG+R D +I++ + C+PA DYLPDPE+
Sbjct: 1 MAEHTFFWHDYETFGRSPRSDRPAQFAGIRTDLDLNEIDAPLMQHCQPAPDYLPDPESCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI PQ L GV E F+ I + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 61 LTGIVPQTCLELGVPEHTFADAIEDQLARPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLDV+R YA PDGIQWP DDG SFKL+ L ANGI H AHDA +
Sbjct: 121 REWQNECGRWDLLDVVRCCYALRPDGIQWPRHDDGRPSFKLEHLTAANGISHEGAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT----PLVHVSGMFGASRS 235
DV AT+AL LI+ +PKLF++ R K+ + L +I+ P +H+SGM+G R
Sbjct: 181 DVRATIALARLIKNARPKLFDFCLRLRKKDAV--LAEIEGAQRQGRPFLHISGMYGPERG 238
Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKE 294
A++ P+A HP K+ +I +L+ D LD+ + RLF EL +G+ +PIK
Sbjct: 239 CLAIVWPLAPHPTNKNEIIVWDLAEDPGELFTLDAEAIRARLFVKASELPEGVGRLPIKS 298
Query: 295 VHLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTL-LRQQTNLRDRFKAIYNKPYTSS 352
+H+NK P+++ + E +RWGID + L + L R+ + + ++ +P +
Sbjct: 299 IHINKSPVVIAQLKTLGAEMAQRWGIDKDQALHHAELAARKGATMAGIWPEVFARPAAAE 358
Query: 353 SQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
DVD LY GF DR+ + R+ APE+L+ F+D RL EL R+RARNFP TL
Sbjct: 359 PPDVDEDLYGGFIGQDDRRTLQRVRALAPEKLADKLPTFNDPRLDELLLRWRARNFPQTL 418
Query: 413 SEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEG--LINALYEYLQ 465
++E+ W H + L + + ++ +L GE ++ + G ++ ALY+Y +
Sbjct: 419 RDEERARWERHCARRLHDGAGGAMTLAAFFERIDTL-GEALPEDDERGPEILGALYDYAE 477
Query: 466 WVIP 469
+ P
Sbjct: 478 QIAP 481
>gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1]
gi|300075708|gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum
seropedicae SmR1]
Length = 467
Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/435 (42%), Positives = 255/435 (58%), Gaps = 4/435 (0%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+NH F+ +DYETFG DRPAQFA VR D + +I + + +CKPA DYLPDP +
Sbjct: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ L G+ E EF+ RI Q P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W NG RWDLLDV+R YA P GIQWP +DDG+ SFKL+ L+ ANG+ H AHDA +
Sbjct: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+AL LIR+ P+LF++ K++ I + P +H SGMF + AL
Sbjct: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+ HP K+ VI +L D LD+ + +RLF+ D+L +G+ +P+K +HLN
Sbjct: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300
Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K P+++ + E ID + L + +L + +Y + + DVD
Sbjct: 301 KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQR-ESEGPADVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF + DR+ ++++ +P+ L+T ++ F D RL E+ FRYRAR+FP TLS +E
Sbjct: 360 EDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEA 419
Query: 418 QDWLEHRKKMLTRSR 432
Q W EHR R R
Sbjct: 420 QHWEEHRAAAPVRGR 434
>gi|34496784|ref|NP_900999.1| exonuclease I [Chromobacterium violaceum ATCC 12472]
gi|34102639|gb|AAQ59004.1| exodeoxyribonuclease I [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/465 (39%), Positives = 274/465 (58%), Gaps = 9/465 (1%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+NH F +DYETFG DRP+QFAG+R D + +I + +C+PA DYLP +A
Sbjct: 1 MSNHTFFWHDYETFGAVPRQDRPSQFAGIRTDAELNEIGEPVMLYCRPAPDYLPTLQACL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGITPQ + GV E EF+ I + + P T +GYN++RFDD +R +F+RN D Y
Sbjct: 61 LTGITPQLCRQQGVAEHEFAGVIERELATPATIGVGYNSLRFDDEVTRFLFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLD++RA YA PDGI WP +DG TSFKL+ L+ ANG+ H +AHDA +
Sbjct: 121 REWQNHCGRWDLLDLVRATYALRPDGIVWPKHEDGRTSFKLEHLSAANGLAHASAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+AL LIR+++PKLF+Y R K+ ++ + + + P++HVSGM+G R N A+
Sbjct: 181 DVRATIALARLIRQRQPKLFDYYLTLRKKDAVKVQLSLHDPKPVLHVSGMYGVERGNLAV 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+A HP + VI +L+ D + L + + +R+FT DEL +G+ +P+K +H+N
Sbjct: 241 VWPLAAHPTNANEVIVWDLAHDPAELRGLSADDIRQRMFTRADELPEGVARLPVKTIHIN 300
Query: 299 KCP-ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K P ++ + ++ RWG+D + R +L ++ +Y + QDVD
Sbjct: 301 KSPFVVANLKALGDDNAARWGMDLAAIHRHAEAARALPDLSALWRRVYQRE-AGEPQDVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF ++ DR+ + ++ R + QL+ F D +L EL FRYRARNFP TLS E+
Sbjct: 360 QNLYGGFVSNNDRKALQKMRRLSAAQLAGEMALFEDPQLAELLFRYRARNFPDTLSGDEQ 419
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYE 462
+ W K ++R+ + Q E + E +G N L +
Sbjct: 420 KRW-----KAWCQARLAQSWPAFQQELAELRAGELTDGQRNLLQQ 459
>gi|87121491|ref|ZP_01077380.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
gi|86163334|gb|EAQ64610.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
Length = 457
Score = 349 bits (895), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 177/454 (38%), Positives = 269/454 (59%), Gaps = 8/454 (1%)
Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
QFAG+R D ++ +I + +C+ A+D LP P+A +TGI+PQ A R+G E EF I
Sbjct: 2 QFAGIRTDLEFNQIGEPIMIYCQLAEDVLPHPDACLLTGISPQDANREGYPETEFMAMIE 61
Query: 84 QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP 143
+ F+ P TC +GYN+IRFDD R FYRNF D Y W N SRWD++D++R YA P
Sbjct: 62 KEFATPGTCALGYNSIRFDDEVVRFGFYRNFIDPYAREWQNACSRWDIIDLVRMCYAIRP 121
Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLY 203
+GI WP +DG S KL+DL AN I H AHDA +DVY T+ + LI++K+PKL++Y +
Sbjct: 122 EGINWPKNEDGQVSLKLEDLTKANDIAHEQAHDALSDVYGTIEMAKLIKQKQPKLYDYYF 181
Query: 204 DYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMR 263
R K +L+K ID M P +HVSGMFGA ++ A +AP+A HP K+ VI +L D +
Sbjct: 182 KMREKGELQKFIDPYRMKPFLHVSGMFGAIKNYAAFVAPIAPHPTNKNGVILFDLMQDAQ 241
Query: 264 VFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEH-FERWGIDHK 322
DL ++ R+F++ + L +P+K +H N+ P + P + K R +D +
Sbjct: 242 PLIDLSVDEIRHRVFSTKEALGDTPRLPLKTLHYNRSPAVAPATFLKDTSVVSRLNLDGE 301
Query: 323 RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFFADVDRQIMDRILRTAP 381
C +NL +L+ L ++ ++ + + +D D LY GFF+ D+ M+ I +T
Sbjct: 302 ICRQNLAILKSYPELANKMSQVFMQSHEKIDKDPDVMLYSGGFFSREDKARMEEIRQTPL 361
Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK-KMLTRSR-----IEE 435
LS L+L F DRRLPE+ RY RN+P L+ ++Q+W E+R+ K+L S ++
Sbjct: 362 NALSELSLSFDDRRLPEMLMRYIGRNYPEQLTSTQRQEWEEYRQAKLLDPSAGASICMDA 421
Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+ N+L L+ E + + K+ ++ L +Y Q + P
Sbjct: 422 FFNRLNELAQETELSKSKQIMLQDLADYAQSIYP 455
>gi|213025919|ref|ZP_03340366.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 338
Score = 349 bits (895), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 239/339 (70%), Gaps = 3/339 (0%)
Query: 132 LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
+DVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L+
Sbjct: 1 MDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLV 60
Query: 192 REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKD 251
+ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP ++
Sbjct: 61 KTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRN 120
Query: 252 SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKK 311
+VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + +
Sbjct: 121 AVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRP 180
Query: 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYDGFFADVD 369
E +R GI+ + CL+NL +LR+ +RD+ AI+ +P+ ++S +VD+QLYDGFF+D D
Sbjct: 181 EDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-ATSDNVDAQLYDGFFSDAD 239
Query: 370 RQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLT 429
R M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT
Sbjct: 240 RAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLT 299
Query: 430 RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 300 PEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 338
>gi|332526171|ref|ZP_08402306.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
gi|332110011|gb|EGJ10639.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
Length = 492
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 189/477 (39%), Positives = 274/477 (57%), Gaps = 16/477 (3%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFGR DRPAQFAG+R D + +I + ++FC+P D LPDPE+ +TGI
Sbjct: 19 FFWHDYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDTLPDPESCLLTGIL 78
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+AL +GV E EF+ RI + P T +GYN+IRFDD +R +F+RN D Y W N
Sbjct: 79 PQQALAEGVAEREFAARIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYAREWQN 138
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
G RWDLLDV+R +A P+GI+WP +DG SFKL+ L ANG+ H AHDA +DV AT
Sbjct: 139 GCGRWDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALSDVRAT 198
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL LIR+++P+L+++ R+K+ +R I + P +H+SGM+G A++ P+A
Sbjct: 199 IALARLIRQRQPRLWDFCLKLRHKDAVRTEIGVGR--PFLHLSGMYGVENGCMAVVWPLA 256
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPI 302
HP ++ +I +L+ D LD+ + +R++T +EL G +PIK VHLNK P+
Sbjct: 257 PHPTNRNELIVWDLAQDPAELASLDAETVRRRMYTKTEELAAAGETRLPIKTVHLNKSPV 316
Query: 303 LMPIDYCKKEHFERWGIDHKRCL---ENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
++ ERWG+D +R L E L + L + ++ KP DVD
Sbjct: 317 VIGNLKTLGPARERWGLDLERALVHAERAAALGR--TLEPLWAQVFVKPAAGGPVDVDED 374
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF D DR+ + R+ L++ F D RL EL FRYRARNF TL E++
Sbjct: 375 LYGGFLGDEDRRQLQRLRGLDGAALASRRPAFDDPRLDELLFRYRARNFADTLDADERER 434
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
W HR L ++ Y ++ L + + DE + ++ ALY++ + V P
Sbjct: 435 WAAHRHARLIAGAGGVLTLQAYAERIDELAEAAAERDDERAQSILEALYDWAEQVAP 491
>gi|53803521|ref|YP_114798.1| exonuclease I [Methylococcus capsulatus str. Bath]
gi|53757282|gb|AAU91573.1| exodeoxyribonuclease I [Methylococcus capsulatus str. Bath]
Length = 478
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 185/467 (39%), Positives = 268/467 (57%), Gaps = 9/467 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YD ETFG D A DR AQFAG+R D ++ I +V +C+P+DD +P P+A +TGIT
Sbjct: 7 FYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ A GV E+ F IH+ F P TC++GYN +RFDD R+ FYRN YD Y W
Sbjct: 67 PQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYAREWKG 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWD++D+ R A PDGI+WP G+ FKL+ LA ANGI H +AHDA +DV AT
Sbjct: 127 GNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDVRAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A LI E++P+LF++ + R K + +L+ + P++HVS F ASR A + P+
Sbjct: 187 VAFARLIAERQPRLFQFALESRAKGAVERLLALGAWQPVLHVSEKFSASRHCIACVLPLC 246
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKCPIL 303
HPR VI +L+ D DL ++ +RLFT EL +P+K VH N+CP++
Sbjct: 247 RHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGVHTNRCPVV 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYT-SSSQDVDSQLY 361
+P+ + ER GID C L+ ++ + A + + ++ D + LY
Sbjct: 307 VPMSALRPADGERLGIDAVLCRRRARWLQDHAEDIIPKISAAFEVDASFEAASDPELMLY 366
Query: 362 -DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GF D DR+ +D++ R P+QL+ F D R EL FR+RARNFP TL+ +E++ W
Sbjct: 367 RGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNFPETLNAEERERW 426
Query: 421 LEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
R+ L + E+ +++ L + + D GK +++AL Y
Sbjct: 427 TAFRRARLAGIGGGLSLAEFFSRIDRLRSQ-ESDAGKRAILDALEVY 472
>gi|224826521|ref|ZP_03699622.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
gi|224601122|gb|EEG07304.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
Length = 475
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 274/476 (57%), Gaps = 9/476 (1%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+ H F +DYETFG DRPAQFAG+R D + +I + +C+P+ DYLP PEA
Sbjct: 1 MSQHTFFWHDYETFGTVPRQDRPAQFAGIRTDAELNEIGEPVMLYCRPSPDYLPSPEACL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGITPQ + GV E EF+ I + + P T +GYN++RFDD +R +F+RN D Y
Sbjct: 61 LTGITPQLCQQHGVAEHEFAGVIERELATPGTIGVGYNSLRFDDEVTRFLFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLD++RA YA P+GI+WP D G SFKL+ L+ ANG+ H AHDA +
Sbjct: 121 REWQNQCGRWDLLDLVRATYALRPEGIEWPKHDTGLPSFKLEHLSAANGLAHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+AL LIR+++PKLFE+ R K+ +R + + PL+HVSGM+GA R N A+
Sbjct: 181 DVRATIALARLIRQRQPKLFEFYLGLRKKDAVRHQLSLHAPRPLLHVSGMYGAERGNLAV 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLN 298
+ P+A HP K+ VI +L+ D + L + +RLF+ DEL G+ +PIK +H+N
Sbjct: 241 VWPLAEHPSNKNEVIVWDLAYDPAELRGLGPDTIRQRLFSRSDELPDGVSRLPIKTIHIN 300
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K P ++ + E + WGID + + NL ++ +Y + T + DVD
Sbjct: 301 KSPFVVSNLRVLSDERADHWGIDLDAVTRHAETAQALPNLTSVWRKVYQR-ETGAPADVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF ++ DR+ + R+ + QL+ F D +L E FRYRARNFP +LS E+
Sbjct: 360 ENLYGGFVSNNDRRELTRLRTLSAVQLAGERPAFDDAQLSEQLFRYRARNFPASLSAAEQ 419
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSL----SGEYKGDEGKEGLINALYEYLQWVIP 469
+ W + L I +++ Q L + E D + L+ A+ +++ P
Sbjct: 420 ERWQSWCRSKLIDGAIPG-RHRAQCLEEIATLEATADARGQTLLAAIRQFVDETAP 474
>gi|145207002|gb|ABP37869.1| EpsE [Pseudoalteromonas sp. SM9913]
Length = 356
Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/350 (48%), Positives = 236/350 (67%), Gaps = 2/350 (0%)
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y + N NSR
Sbjct: 1 MQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 60
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV AT+AL
Sbjct: 61 WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTATIALA 120
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH S A++ T +AP+++HP
Sbjct: 121 KLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVAPMSFHPV 180
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307
K++VI +L+ + +V DL+ QL KRL+T +L +G +PV +K VHLNKCPIL P
Sbjct: 181 NKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKCPILAPAK 240
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLYDGFFA 366
E+ R GID ++CL NL +L+ T LRD+ ++N+ S++ +VD LYDGF +
Sbjct: 241 TLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDYLLYDGFTS 300
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ I PE L++L L F D + L FRYRARN+P TL+ E
Sbjct: 301 HADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPETLNPPE 350
>gi|121594205|ref|YP_986101.1| exonuclease I [Acidovorax sp. JS42]
gi|120606285|gb|ABM42025.1| Exodeoxyribonuclease I subunit C [Acidovorax sp. JS42]
Length = 479
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 276/476 (57%), Gaps = 14/476 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG + DRPAQFA VR D + +I + +C+PA+DYLPDP++ ITGIT
Sbjct: 4 FLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITGIT 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ L G+ E EF+ RI ++P T +GYN IRFDD +R +F+RN D Y W N
Sbjct: 64 PQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQN 123
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
RWDLLDV+R YA P+GI+WP DG SF+L+ L+ ANG+ H AHDA +DV AT
Sbjct: 124 QCGRWDLLDVVRLTYALRPEGIEWPEV-DGKPSFRLEHLSKANGLAHEAAHDALSDVRAT 182
Query: 185 LALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
+AL LIR + P+LF++ K+ +LR Q P +HVSGMF A R A++
Sbjct: 183 IALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPAERGCLAVM 242
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP K+ ++ +L+ D L + ++ RLFT +L +G+ +P+K VHLNK
Sbjct: 243 WPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVHLNK 302
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
P+++ ++ + +RWGID + + R +L + ++ +P DVD
Sbjct: 303 SPMVVGNLNTLTPDMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQRP-AEGPLDVDQ 361
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ ++R+ E+L+ L F D RL EL +RYRARNFPHTLS +E++
Sbjct: 362 DLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPEEQE 421
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W HR ML + +L +L E DE E ++ A+Y+Y + + P
Sbjct: 422 RWEAHRVAMLVEGEGGGLTFDALFERLDTLGAEAD-DERTEAILGAVYDYAESIAP 476
>gi|28056789|gb|AAO28661.1| exodeoxyribonuclease I [Xylella fastidiosa Temecula1]
Length = 494
Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/468 (39%), Positives = 271/468 (57%), Gaps = 9/468 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 17 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 76
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 77 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 137 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 196
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 197 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 256
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 316
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G+D LR +L ++ + +++ Y +++ D D+
Sbjct: 317 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFSHTY-NTANDADA 375
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ ++P+ L T D RL EL FRYRARNFP TLS E+
Sbjct: 376 SLYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 435
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
W +R++ LT ++Y ++ L + D K+ L++ L
Sbjct: 436 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQL 483
>gi|161484692|ref|NP_779012.2| exonuclease I [Xylella fastidiosa Temecula1]
gi|182681388|ref|YP_001829548.1| exonuclease I [Xylella fastidiosa M23]
gi|182631498|gb|ACB92274.1| Exodeoxyribonuclease I [Xylella fastidiosa M23]
gi|307579833|gb|ADN63802.1| exonuclease I [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 478
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 183/468 (39%), Positives = 271/468 (57%), Gaps = 9/468 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 1 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 61 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 181 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G+D LR +L ++ + +++ Y +++ D D+
Sbjct: 301 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFSHTY-NTANDADA 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ ++P+ L T D RL EL FRYRARNFP TLS E+
Sbjct: 360 SLYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 419
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
W +R++ LT ++Y ++ L + D K+ L++ L
Sbjct: 420 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQL 467
>gi|114331862|ref|YP_748084.1| exonuclease I [Nitrosomonas eutropha C91]
gi|114308876|gb|ABI60119.1| Exodeoxyribonuclease I subunit C [Nitrosomonas eutropha C91]
Length = 486
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 183/466 (39%), Positives = 265/466 (56%), Gaps = 8/466 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ +DYET G + DRP QFAG+R D +I V +CKPA D LP PEA +T
Sbjct: 5 TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A G+ E EF IH + P TC +GYN +RFDD +R YRNFYD Y
Sbjct: 65 GITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYARE 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W +GNSRWD++D+ R +A P+GI WP +G SF+L+D+ ANG+ H +AHDA +DV
Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL L+R+++P+L+++L+ R+K + L+D+ TP++H S M+ + + T L+
Sbjct: 185 RATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVM 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+ +S++ +L D F L+ L +RLFT EL +G +P+K + LNKC
Sbjct: 245 PLLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKC 304
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P L P E +R G++ ++C ++ LL Q + R + Y+ D D L
Sbjct: 305 PALAPQKVLNDEIAKRIGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIFPENDADLAL 364
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGF D DR + + + PE+L L+ F D R EL FRYRARNFP TLS +EK W
Sbjct: 365 YDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSAQEKHRW 424
Query: 421 LEHRKKMLTRSRI------EEYKNKLQSLSGEYKGDEGKEGLINAL 460
H ++ L I +Y+ KL L + + ++ ++N L
Sbjct: 425 QVHCRRQLGEDAINGSLTLNKYRQKLIQLRTDCP-QQAQQEILNEL 469
>gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c]
Length = 478
Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 183/471 (38%), Positives = 273/471 (57%), Gaps = 9/471 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +F+ YD ETFG+D R AQFA VR D + IE F KPADD LP P+A I
Sbjct: 1 MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 61 TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 181 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A RL+T +L +G +P+KEVHLNK
Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ + + F R G+D LR +L ++ + +++ Y +++ D D+
Sbjct: 301 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFSHTY-NTANDADA 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+ + ++ + P+ L+T D RL EL FRYRARNFP TLS E+
Sbjct: 360 SLYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQT 419
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
W +R+ LT +++Y ++ L + D K+ L++ L +
Sbjct: 420 RWDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASW 470
>gi|330860010|emb|CBX70337.1| exodeoxyribonuclease I [Yersinia enterocolitica W22703]
Length = 337
Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 162/332 (48%), Positives = 238/332 (71%), Gaps = 4/332 (1%)
Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
MRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVYAT+A+ +++
Sbjct: 1 MRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVYATIAMAKRVKQA 60
Query: 195 KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
+P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+AWHP K++VI
Sbjct: 61 QPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVI 120
Query: 255 GCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPILMPIDYCKKEH 313
C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L P E+
Sbjct: 121 MCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCPVLAPAKTLLPEN 180
Query: 314 FERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYDGFFADVDRQ 371
+R GID +RCL+NL LLRQ +R++ A++ +P+ + S DVD+QLY+GFF+D DR
Sbjct: 181 ADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPF-AVSDDVDAQLYNGFFSDADRA 239
Query: 372 IMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS 431
M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q WLEHR++ L
Sbjct: 240 TMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWLEHRREALNPE 299
Query: 432 RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++++Y +L++L +Y+ D+ K L+ AL++Y
Sbjct: 300 KVQDYVLQLEALYNQYEDDKEKLALLKALFDY 331
>gi|9107140|gb|AAF84824.1|AE004021_1 exodeoxyribonuclease I [Xylella fastidiosa 9a5c]
Length = 494
Score = 342 bits (878), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 183/468 (39%), Positives = 272/468 (58%), Gaps = 9/468 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +F+ YD ETFG+D R AQFA VR D + IE F KPADD LP P+A I
Sbjct: 17 MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 76
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 77 TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 137 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 196
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 197 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 256
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A RL+T +L +G +P+KEVHLNK
Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 316
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ + + F R G+D LR +L ++ + +++ Y +++ D D+
Sbjct: 317 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFSHTY-NTANDADA 375
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+ + ++ + P+ L+T D RL EL FRYRARNFP TLS E+
Sbjct: 376 SLYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQT 435
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
W +R+ LT +++Y ++ L + D K+ L++ L
Sbjct: 436 RWDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQL 483
>gi|30248680|ref|NP_840750.1| exonuclease I [Nitrosomonas europaea ATCC 19718]
gi|30180275|emb|CAD84582.1| exodeoxyribonuclease I [Nitrosomonas europaea ATCC 19718]
Length = 496
Score = 342 bits (878), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 187/466 (40%), Positives = 262/466 (56%), Gaps = 11/466 (2%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+DYET G DRP QFAG+R D +I V +C+PA D LP PEA +TGITPQ
Sbjct: 11 HDYETSGATPRWDRPFQFAGLRTDEALNEIGDPLVIYCQPARDRLPHPEACLLTGITPQM 70
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
A G+ E EF IH + P TC +GYN +RFDD +R YRNFYD Y W +GNS
Sbjct: 71 AEARGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFTLYRNFYDPYAREWQSGNS 130
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWD++D+ R +A P+GI WP +G SF+L+D+ ANG+ H +AHDA +DV AT+AL
Sbjct: 131 RWDVIDLARMTFALRPEGINWPINGEGKPSFRLEDITTANGLVHDSAHDALSDVRATIAL 190
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L+R ++P+L+++L+ R+K L+D++ P++H S M+ + T L+ P+
Sbjct: 191 ARLLRAQQPRLYDWLFRLRDKRAAGNLLDMKTHAPVLHTSRMYSSEYGCTTLVMPLLPET 250
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPI 306
+SV+ +L D F LD LA+RLFT +EL +GL +P+K V LNKCP L P
Sbjct: 251 GNANSVLVYDLRHDPAEFVLLDIDALAERLFTPKEELAEGLQRLPVKAVRLNKCPALAPQ 310
Query: 307 DYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFA 366
E R G++ ++C ++ LL Q + R K Y+ + D D LYDGF +
Sbjct: 311 KVLNDEVANRIGLNVEQCQQHWQLLLQHPDFMQRIKQAYSGNKVFAENDADLALYDGFAS 370
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
D DR + + P +L+ L F D R EL FRYRARNFP TLS +E+ W H ++
Sbjct: 371 DHDRNLFPLVRDAEPGKLADLAGKFQDERYIELLFRYRARNFPDTLSVQEEHHWQMHCRR 430
Query: 427 MLTRSRI------EEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
L + I EY KL L + D ++ ++ L E W
Sbjct: 431 QLGENAINGSLTLNEYHQKLLQL----RTDCPQQAQLDILNELEAW 472
>gi|120611894|ref|YP_971572.1| exonuclease I [Acidovorax citrulli AAC00-1]
gi|120590358|gb|ABM33798.1| Exodeoxyribonuclease I subunit C [Acidovorax citrulli AAC00-1]
Length = 478
Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 277/476 (58%), Gaps = 14/476 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG D DRPAQFAG+R D +I + +C+PA DYLPDPE+ +TGIT
Sbjct: 4 FFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMIYCRPAPDYLPDPESCLLTGIT 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ L G+ E EF+ RI + P T +GYN IRFDD +R +F+RN D Y W N
Sbjct: 64 PQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQN 123
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
RWDLLDV+R YA PDGI+WP ++DG+ S KL+ L+ ANG+ H AHDA +DV AT
Sbjct: 124 ECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDVRAT 183
Query: 185 LALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
+AL LIRE++P+LFE+ R K+ +LR P +HVSGMF A R ++
Sbjct: 184 IALARLIRERQPRLFEFALGLRRKDRVAAELRLPATADTARPFLHVSGMFPADRGCLGIL 243
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP ++ +I +L+ D LD+ ++ +RLFT +L +G+ +P+K VHLNK
Sbjct: 244 WPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVHLNK 303
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
P+++ ++ +RWGID +R + L R ++ + ++ +P + + DVD
Sbjct: 304 SPMVVGNVNTLTPAMAQRWGIDVERAAAHAELARALPDMSAIWAEVFARPREAPA-DVDQ 362
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ + R+ P++L+ F D RL EL +R+RARNFP TL E +++
Sbjct: 363 DLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEADRE 422
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W R L + +L +L GE DE E ++ ALYEY + + P
Sbjct: 423 RWEALRVARLMEGEGGGLTFDALFARLDTL-GE-TADERGEAILGALYEYAESIAP 476
>gi|71897974|ref|ZP_00680179.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
gi|71732218|gb|EAO34273.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
Length = 488
Score = 342 bits (877), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 182/468 (38%), Positives = 270/468 (57%), Gaps = 9/468 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 11 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 71 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G+D LR +L ++ + +++ Y +++ D D+
Sbjct: 311 VPALIAWNHLRASDFTRLGLDPSMLETKAAQLRACGPDLAEKVRHVFSHTY-NTANDADA 369
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ + + L+T D RL EL FRYRARNFP TLS E+
Sbjct: 370 SLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 429
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
W +R++ LT ++Y ++ L + D K+ L++ L
Sbjct: 430 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQL 477
>gi|326316823|ref|YP_004234495.1| exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373659|gb|ADX45928.1| Exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 478
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 276/476 (57%), Gaps = 14/476 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFG D DRPAQFAG+R D +I + +C+PA DYLPDPE+ +TGIT
Sbjct: 4 FFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMMYCRPAPDYLPDPESCLLTGIT 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ L G+ E EF+ RI + P T +GYN IRFDD +R +F+RN D Y W N
Sbjct: 64 PQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQN 123
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
RWDLLDV+R YA PDGI+WP ++DG+ S KL+ L+ ANG+ H AHDA +DV AT
Sbjct: 124 ECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDVRAT 183
Query: 185 LALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
+AL LIR+++PKLFE+ R K+ +LR P +H SGMF A R ++
Sbjct: 184 IALARLIRQRQPKLFEFALGLRRKDRVAAELRLPATADTARPFLHASGMFPADRGCLGIL 243
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP ++ +I +L+ D LD+ ++ +RLFT +L +G+ +P+K VHLNK
Sbjct: 244 WPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVHLNK 303
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
P+++ ++ +RWGID +R + + R ++ + ++ +P + + DVD
Sbjct: 304 SPMVVGNVNTLTPAMAQRWGIDMERAAAHAEIARALPDMSAIWAEVFARPKDAPA-DVDQ 362
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ + R+ P++L+ F D RL EL +R+RARNFP TL E +++
Sbjct: 363 DLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEADRE 422
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W R L + +L +L GE DE E ++ ALYEY + + P
Sbjct: 423 RWEALRVARLMEGEGGGLTFDALFARLDTL-GE-TADERGEAILGALYEYAESIAP 476
>gi|222110882|ref|YP_002553146.1| exonuclease i [Acidovorax ebreus TPSY]
gi|221730326|gb|ACM33146.1| Exodeoxyribonuclease I [Acidovorax ebreus TPSY]
Length = 479
Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 189/476 (39%), Positives = 274/476 (57%), Gaps = 14/476 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG + DRPAQFA VR D + +I + +C+PA+DYLPDP++ ITGIT
Sbjct: 4 FLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITGIT 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ L G+ E EF+ RI ++P T +GYN IRFDD +R +F+RN D Y W N
Sbjct: 64 PQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQN 123
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
RWDLLDV+R YA P+GI+WP DG SF+L+ L+ ANG+ H AHDA +DV AT
Sbjct: 124 QCGRWDLLDVVRLTYALRPEGIEWPEV-DGKPSFRLEHLSQANGLAHDAAHDALSDVRAT 182
Query: 185 LALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
+AL LIR + P+LF++ K+ +LR Q P +HVSGMF R A++
Sbjct: 183 IALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPTERGCLAVM 242
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP K+ ++ +L+ D L + ++ RLFT +L +G+ +P+K VHLNK
Sbjct: 243 WPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVHLNK 302
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
P+++ ++ +RWGID + + R +L + ++ +P DVD
Sbjct: 303 SPMVVGNLNTLTPAMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQRP-AEGPLDVDQ 361
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ ++R+ E+L+ L F D RL EL +RYRARNFPHTLS +E++
Sbjct: 362 DLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPEEQE 421
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W HR +L + +L +L E DE E ++ A+Y+Y + + P
Sbjct: 422 RWEAHRMAVLVEGEGGGLTFDALFERLDTLGAEAD-DERTEAILGAVYDYAESIAP 476
>gi|320540911|ref|ZP_08040415.1| putative exonuclease I [Serratia symbiotica str. Tucson]
gi|320029026|gb|EFW11201.1| putative exonuclease I [Serratia symbiotica str. Tucson]
Length = 310
Score = 339 bits (870), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 161/311 (51%), Positives = 221/311 (71%), Gaps = 4/311 (1%)
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +SW NGNSRWDLLDVMRA YA PDGI WP +DG SF+L+ L ANG+EH AHDA
Sbjct: 1 YAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHDA 60
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
+DVYAT+A+ +++ +P+LF++L YRNK++L LIDI +TPLVHVSGMFGA+R NT
Sbjct: 61 MSDVYATIAMAKQVKQAQPRLFDFLLQYRNKHKLNTLIDIAEVTPLVHVSGMFGAARGNT 120
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVH 296
+ +AP+AWHP K++ I C+L+GD+ L++ QL +RL+T D L P+P+K VH
Sbjct: 121 SWVAPLAWHPVNKNAAIMCDLAGDLTPLLTLNADQLRERLYTRRDALTVDQPPIPLKLVH 180
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQ 354
+NKCP+L P E+ ER GID + C +NL LLRQ +R++ A++ +PY S
Sbjct: 181 INKCPVLAPARTLLPENTERLGIDRRTCRQNLQLLRQHPQVREKVVALFAEAEPY-KGSD 239
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
DVD++LYDGFF+D D+ M I +T P+ L L+L FSD R+ EL FR+RARN+P+TL+
Sbjct: 240 DVDARLYDGFFSDADKAAMKIIQQTKPQDLPALDLAFSDSRMKELLFRFRARNYPNTLNN 299
Query: 415 KEKQDWLEHRK 425
E+Q WL++R+
Sbjct: 300 AEQQRWLQYRQ 310
>gi|71275767|ref|ZP_00652051.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
gi|71902145|ref|ZP_00684172.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
gi|170730127|ref|YP_001775560.1| exonuclease I [Xylella fastidiosa M12]
gi|71163345|gb|EAO13063.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
gi|71728093|gb|EAO30295.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
gi|167964920|gb|ACA11930.1| Exodeoxyribonuclease I [Xylella fastidiosa M12]
Length = 488
Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 180/468 (38%), Positives = 269/468 (57%), Gaps = 9/468 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 11 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ E I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 71 TGITPQHAQREGISEVAAFAHITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G++ LR +L ++ + +++ Y +++ D D+
Sbjct: 311 VPALIAWNHLRASDFTRLGLNPAMLETKAAQLRACGPDLAEKVRHVFSHTY-NTANDADA 369
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ + + L+T D RL EL FRYRARNFP TLS E+
Sbjct: 370 SLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 429
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
W +R++ LT ++Y ++ L + D K+ L++ L
Sbjct: 430 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQL 477
>gi|329907300|ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
gi|327547025|gb|EGF31914.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
Length = 477
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 275/477 (57%), Gaps = 11/477 (2%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M++H F+ +DYETFG + DRPAQFA +R D + +I + +C+PA+DYLPDP++
Sbjct: 1 MSSHTFLWHDYETFGVNTRSDRPAQFAAIRTDAELNEIGDEIMLYCQPANDYLPDPQSCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ L+ G+ E +F+ I FS T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 ITGITPQVCLQRGLPEYQFAAAIEAAFSASGTVGVGYNTIRFDDEITRFLFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDL+DV+R YA P+GI WP D+G SF+L+ L ANGI H AHDA +
Sbjct: 121 REWQNQCGRWDLMDVVRMTYALRPEGIHWPMNDEGKPSFRLELLTKANGIAHAAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+AL LIR ++PKLF++ + K+++ I + P +HVSGMF A R +
Sbjct: 181 DVRATIALARLIRTQQPKLFDFCFALHKKDRVSAEIGLPARKPFLHVSGMFPAERGCLGV 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT-SHDELKGLVPVPIKEVHLN 298
+ P+A +P K+ VI +LS D LD+ + R+FT S D +G+ +PIK +HLN
Sbjct: 241 MWPLATYPTNKNEVIAWDLSHDPSELATLDADTIRLRMFTRSADLPEGVTRLPIKTIHLN 300
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K P+++ + E+W ID ++ + T+ ++ ++ ++ +P ++ DVD
Sbjct: 301 KSPMVVGNLKTLSPAMAEKWQIDLEQAHRHATIAATLVDMDALWQQVFQRP-AQATPDVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY+GF + DR+ + + +P L+ + F D RL EL FRYRARNFP TL E
Sbjct: 360 EDLYNGFVGNGDRRKLTELRALSPTALAKTHPGFDDVRLEELLFRYRARNFPDTLDAAEA 419
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEY-----KGDEGKEGLINALYEYLQWVIP 469
+ W +HR L + L GE + D E ++ ALY+Y++ + P
Sbjct: 420 ERWEQHRSDRLFEG--SAGARTVDILFGEIDQLSEQADTRGEEILGALYDYVEMIAP 474
>gi|118602911|ref|YP_904126.1| exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567850|gb|ABL02655.1| Exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 471
Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 177/439 (40%), Positives = 263/439 (59%), Gaps = 13/439 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYETFG +DR +QFAG+R D + I+ ++F+CKP +D LP PEA FITGI+
Sbjct: 4 FYWYDYETFGISPKIDRISQFAGIRTDENFNIIDE-QMFYCKPTNDCLPSPEACFITGIS 62
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ + G++E EF ++IH FS NTCI+GYN+IRFDD ++R+ YRNF D Y W W N
Sbjct: 63 PQLCEQKGMIEHEFIKKIHAQFSTSNTCIVGYNSIRFDDEFTRHTLYRNFIDPYTWHWQN 122
Query: 125 GNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GN+RWD+L+V+R YA D ++W G FKL L+LAN IEH NAHDA ADV+A
Sbjct: 123 GNTRWDILNVVRLCYALKKDTSLKWVYDKQGNPVFKLDQLSLANDIEHANAHDALADVHA 182
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ +I++ +P+LF Y + R K + I + P++H + M A S T L +
Sbjct: 183 TIAIAKIIKQTQPQLFNYSFSLREKKTVASKISL--FEPMLHTTDMHPAQLSCTRLSVAL 240
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A+HP Y D V+ NL D V +LD L FT EL K + + IKE+ NK P+
Sbjct: 241 AYHPEYNDRVLMFNLDQDPCVLLELDIEALKTLTFTKQSELSKEVERLQIKELIFNKSPM 300
Query: 303 LMPIDY-CKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
+P Y + + ++ ID +C+++L+ ++ Q + + +Y N + ++VD
Sbjct: 301 FVPNIYKLEPKIIKQLNIDMNQCMQHLSFIKDNQLKIGKIVQDLYKNDQKHIALKEVDQS 360
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGF + D++I ++I + +L + F D +L LF ++ARN+P+TL+E EK+D
Sbjct: 361 LYDGFIDNTDKRICNQIQALSVHKLKEFHPKFKDEKLSRLFMHFKARNYPNTLTENEKED 420
Query: 420 WLEHRKKMLTRSRIEEYKN 438
W E + + RI+ +N
Sbjct: 421 WFE-----IVQGRIQTNQN 434
>gi|269468419|gb|EEZ80084.1| exonuclease I [uncultured SUP05 cluster bacterium]
Length = 471
Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 177/449 (39%), Positives = 263/449 (58%), Gaps = 13/449 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYETFG DR +QFAG+R D I +F+CKP D LP PEA +TGI+
Sbjct: 4 FYWYDYETFGISPKTDRISQFAGIRTDENL-NILDEHMFYCKPTHDCLPAPEACAVTGIS 62
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ + GV+E EF ++I+ F+ PNTCI+GYN+IRFDD ++R YRNF D Y W W +
Sbjct: 63 PQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYRNFIDPYAWHWKD 122
Query: 125 GNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GN+RWD+LDV+R YA D ++W ++G FKL L+LANGIEH NAHDA ADV A
Sbjct: 123 GNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIEHANAHDALADVRA 182
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + +I+E +P+LF+Y + R K + I + P++H SGM+ A+ S T L +
Sbjct: 183 TIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMYPATLSCTRLAVAL 240
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A+HP Y D I NL D + +LD +L +FT EL G+ + IK++ NK P+
Sbjct: 241 AYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKRLEIKDLIFNKSPM 300
Query: 303 LMPIDY-CKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIY-NKPYTSSSQDVDSQ 359
+P Y + E+ ID ++ L ++ Q+ + + +Y N + + DVD
Sbjct: 301 FVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRNDKERAPTVDVDQA 360
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGF + D++I +++ R + ++L + F D++L L ++ARN+P++L+E E +D
Sbjct: 361 LYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKARNYPNSLTEDEAED 420
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYK 448
W E + RI+ +N SL Y+
Sbjct: 421 WFE-----TVQGRIQAGENGYTSLDDYYQ 444
>gi|311086852|gb|ADP66933.1| exonuclease I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
Length = 412
Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 229/365 (62%), Gaps = 6/365 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 35 TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTL-----INMCKKICFDSIFIKNLLDSGVVLLHLNRCP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389
Query: 361 YDGFF 365
Y+GFF
Sbjct: 390 YNGFF 394
>gi|319944538|ref|ZP_08018809.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
gi|319742251|gb|EFV94667.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 190/484 (39%), Positives = 269/484 (55%), Gaps = 30/484 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +DYETFGRD LDRPAQFAG+R D ++ + +CKPA DYLPDPEA +TGI
Sbjct: 6 FFWHDYETFGRDPRLDRPAQFAGIRTDLDLNEVGEPVMLYCKPAPDYLPDPEACLLTGIL 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ L G+ E F+ + T +GYN+IRFDD +R++ +R Y W N
Sbjct: 66 PQECLARGLPEYRFADAVLAELGASGTIGVGYNSIRFDDEVTRHLLWRTLRPPYDREWRN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
G SRWDLLDV+RA A P+GI+WP DDG SFKL+ L+ ANG+ H AHDA +DV AT
Sbjct: 126 GCSRWDLLDVVRATAALRPEGIEWPRHDDGRPSFKLEHLSAANGLAHAQAHDALSDVRAT 185
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL LIR ++P+L+ + R K + L +I + P +HVS M+GA R A++ P+A
Sbjct: 186 IALAALIRNRQPRLWNFCLALRQKQAV--LTEIGSDRPFIHVSAMYGAERGGMAVVWPLA 243
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
HP ++ +I +L D DLD+ Q+ RLF+ ++L +G+ +PI+ + +NK PI+
Sbjct: 244 QHPTNRNELIVWDLIHDPAELADLDAEQIRLRLFSKTEDLPEGMTRLPIRSLAINKSPIV 303
Query: 304 MP-IDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSS-SQDVDSQL 360
+ + ERW ID + + R+ T L R +Y +P + DVD L
Sbjct: 304 IGNLKVLTPAVIERWHIDMETIARHTETARRLTPQLASRMDEVYQRPRPQGPAPDVDGDL 363
Query: 361 YDGFFAD-------VDRQIMDRILRTAPEQL----STLNLP-FSDRRLPELFFRYRARNF 408
Y GF + R+ +D A S + +P F D RL E+ FRYRAR F
Sbjct: 364 YGGFIGNDDRRRLDDWRERLDATASQAAASPDADHSHIQIPSFEDPRLEEMSFRYRARQF 423
Query: 409 PHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKL----QSLSGEYKGDEGKEGLINA 459
P LS +EKQ W+ H L + + + ++L QSLS + DE + L+ A
Sbjct: 424 PDMLSTEEKQRWVAHCHARLHQGAGNAMTLATFAHRLDELNQSLSPD---DEHGQRLLEA 480
Query: 460 LYEY 463
LY+Y
Sbjct: 481 LYDY 484
>gi|116515281|ref|YP_802910.1| SbcB [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|116257135|gb|ABJ90817.1| exodeoxyribonuclease I [Buchnera aphidicola str. Cc (Cinara cedri)]
Length = 475
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/460 (34%), Positives = 248/460 (53%), Gaps = 5/460 (1%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+ YDYETFG++VALD+ +QF + D ++ I + FC P DYLPDPEA+ IT I P
Sbjct: 11 IFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILITKILP 70
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
Q + G+ E S++IH FS N CIIGYNNI FD+ +RNIFYRN +D Y WSW N
Sbjct: 71 QYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWSWKNN 130
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
N WD+L+++RA Y F P + W +G SFKL D+ L N I+H++ HDA +DVYAT
Sbjct: 131 NFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIHDAYSDVYATF 190
Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
+ + K F YLY K + + P ++S FG+ N I +
Sbjct: 191 LITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINYNFGCIMYIGL 250
Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMP 305
HP YK++++ +LS D + L K+ T +K L V IK V ++K P+
Sbjct: 251 HPLYKNNIVIFDLSSDFK-----KIFNLYKKYSTCLISIKKLFNVGIKVVSISKSPLFFS 305
Query: 306 IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ +H R ID+ +C +N LL+ +++ + ++ D+D LY+ FF
Sbjct: 306 YNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLMLYNNFF 365
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRK 425
+ DR ++ I + P++ + F D R+ +LFFR +ARNF L+ E + W + K
Sbjct: 366 LNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKKWQFYCK 425
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+ ++EEY K++ ++ ++ L+ L++Y++
Sbjct: 426 NKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIK 465
>gi|302339540|ref|YP_003804746.1| exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
gi|301636725|gb|ADK82152.1| Exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
Length = 484
Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 259/476 (54%), Gaps = 18/476 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YD ETFG LDR AQFAG+R D ++ V +CK DY+PDP+A I
Sbjct: 1 MARSIYWYDLETFGTHPRLDRIAQFAGLRTDEALNELGEPLVLYCKITQDYVPDPKACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP++ LR G+ E F RI++ F P +C+ G+N+I FDD + R YRN D +R
Sbjct: 61 TGITPEETLRKGLSERRFIERINEEFMQPGSCVAGFNSIAFDDEFIRATLYRNLMDPFRR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+RA P GI WP ++G +F+L+ L AN + H NAHDA +D
Sbjct: 121 EWAGGNSRWDLLDVLRAARDLRPQGITWPEGENGRPTFRLEKLTEANALPHQNAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ L+REK+PK+F YLY R K+ R+LID+ P +H S M T+++
Sbjct: 181 VRATIAMARLLREKQPKIFSYLYRGRIKDHARQLIDLHKRRPFLHTSAMLSNEYGYTSIL 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK------GLVPVPIKE 294
APVA HP +++++ +L D + +L + +F +EL L+P
Sbjct: 241 APVAPHPANQNAILCFDLRQDPEPLIERSVDELRRLIFAPSEELSLEESRIRLIP----- 295
Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
+H+N+ P+L P+ + +R G+D C + L + + L + ++ + +
Sbjct: 296 IHINRSPVLAPLSTLDPDTAKRLGLDVTLCGKRAAKLAEASLLTQKIMEVFRRDEAEIRR 355
Query: 355 DVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
D + ++Y GFF+D DRQ M+R +PE + F DRRLPEL +R+ RN L
Sbjct: 356 DPELEIYSGGFFSDADRQRMERFRELSPEAMLKRRGDFYDRRLPELAWRFVCRNHSEILD 415
Query: 414 EKEKQDWLE--HRKKMLTRSRIEE----YKNKLQSLSGEYKGDEGKEGLINALYEY 463
E E++ W + + R+ +K K++ LSG+ G + +I L E+
Sbjct: 416 ENERKKWKSFCAGRLLFPPERLINDFAFFKRKVKELSGDTNLPAGDKKIIKKLAEW 471
>gi|121607268|ref|YP_995075.1| exonuclease I [Verminephrobacter eiseniae EF01-2]
gi|121551908|gb|ABM56057.1| Exodeoxyribonuclease I subunit C [Verminephrobacter eiseniae
EF01-2]
Length = 481
Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 183/479 (38%), Positives = 267/479 (55%), Gaps = 15/479 (3%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG D DRPAQFA +R D + I + C+PA+DYLPDP + +TGIT
Sbjct: 6 FLWHDYETFGTDTRCDRPAQFAAIRTDAELHAIGEPLMLHCQPANDYLPDPASCLLTGIT 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ G+ E +F+ RI + P T +GYN +RFDD +R +F+RN D Y W N
Sbjct: 66 PQHCCAHGLPEHQFAARIEAELARPGTIGVGYNTLRFDDEITRFMFWRNLIDPYAREWKN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADVYA 183
RWDLLDV+R YA PDGI WP +DGA SF+L+DL ANG+ H AHDA +DV A
Sbjct: 126 QCGRWDLLDVVRMTYALRPDGIHWPRHEDGAAPSFRLEDLCRANGLLHEAAHDALSDVRA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN----QLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
T+AL LIR+ LF++ K+ +LR P +HVSGMF A R A+
Sbjct: 186 TIALARLIRQHNRPLFDFALGLHKKDRVAAELRLSGGAGTARPFLHVSGMFPAERGCLAV 245
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+A HP K+ +I +L+ D L ++ R+FT D L +G+ +P+K +HLN
Sbjct: 246 MWPLAGHPVNKNELIAWDLAHDPAALATLGVDEMRLRMFTRTDALPEGVTRLPVKTIHLN 305
Query: 299 KCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
+ P+++ ++ RWGID + ++ R ++ + A++ +P + + DVD
Sbjct: 306 RSPMVVGNVNTLTPALARRWGIDLAQAAQHAQAARALPDMGRVWAAVFARP-SEPAPDVD 364
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF D DR+++D + +A + F D RL ELF+RYRARNFP TL+ +E
Sbjct: 365 QDLYCGFVGDRDRRLLDDLRASAAGMNGKARVHFDDPRLVELFWRYRARNFPATLAPEEA 424
Query: 418 QDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
W H L + ++ ++ LS DE +G++ ALY+Y + + P+
Sbjct: 425 GRWQAHCAARLFHGAGGARTVGQFHARIDELS--ETADERGQGILGALYDYAEQIAPEH 481
>gi|289804761|ref|ZP_06535390.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 321
Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/287 (51%), Positives = 204/287 (71%), Gaps = 4/287 (1%)
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
+FYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANG
Sbjct: 1 MFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANG 60
Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
IEH NAHDA ADVYAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSG
Sbjct: 61 IEHSNAHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSG 120
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
MFGA R NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L
Sbjct: 121 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHA 180
Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--N 346
VP+K VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +RD+ AI+
Sbjct: 181 AVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEA 240
Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN-LPFS 392
+P+ ++S +VD+QLYDGFF+D DR M +L T P L L+ LP S
Sbjct: 241 EPF-ATSDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDYLPLS 286
>gi|88800886|ref|ZP_01116440.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
gi|88776399|gb|EAR07620.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
Length = 517
Score = 305 bits (782), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 248/445 (55%), Gaps = 6/445 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
++ YDYET+G + DR AQFA VR D IE FCKP D + DP AV IT ++
Sbjct: 11 YLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQITRLS 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P + + G+ E EFS+ +H + PNTC GYN+IRFDD SR +FYRN + Y W N
Sbjct: 71 PLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNLINPYEREWKN 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLDV+R +A PDGI+WP RDDG+ SF+L+ L ANG+ H NAHDA +DV AT
Sbjct: 131 GNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANAHDAVSDVKAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+AL LIR+++PKLF+Y + R+K++ R+ ID+ P +H SG AS + P+
Sbjct: 191 IALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASEFCMGIEVPLM 250
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPIL 303
HP + VI ++ D D D+ L L+ +EL +G P+K +HLN+ P++
Sbjct: 251 AHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLKTIHLNRSPMI 310
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QDVDSQLYD 362
P+ E R G+D + + L ++ + ++ D + LY
Sbjct: 311 APMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAAITDPEQALYS 370
Query: 363 GFFADVDRQIMDRILRTA---PEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
GF +D D+ +++R +RT PEQ + D RLP + AR FP L+E++ +
Sbjct: 371 GFISDHDQALLNR-MRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPDCLTEQQLSE 429
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLS 444
W + R+ L + E + Q+L+
Sbjct: 430 WQDQRRTYLIEQQDERHLTLSQALT 454
>gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
Length = 474
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 165/420 (39%), Positives = 240/420 (57%), Gaps = 17/420 (4%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YD ETFG + DR QFAGVR D + + + +P DYLPDP A +TGIT
Sbjct: 7 FFWYDLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLACLVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A+ G+ E +F+ I + NTC +G+N+IRFDD + RN+ YRN D YR W +
Sbjct: 67 PQEAMEKGLRENDFANAILKEMGQKNTCSVGFNSIRFDDEFIRNLLYRNLIDPYRREWAD 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQW-PSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GNSRWD+LD++RA + PD + W PS+D+G FKL +L AN I H +AHDA +DVYA
Sbjct: 127 GNSRWDVLDLIRAAHDLRPDSLAWPPSKDNGNPVFKLTELTTANNISHEHAHDALSDVYA 186
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
TLA+ L++E+ P+LF + R+K +++++++ TP +H F R T + +
Sbjct: 187 TLAISRLLKERNPQLFVWALSLRDKKKVKEIVNPPFGTPFLHTCASFTTPRGCTRPVVAI 246
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
++ P +SVI +L+ QDLD LFT+ DE VP ++ + LNKCP +
Sbjct: 247 SFVPSNPNSVICFDLT------QDLDP------LFTASDEDIMRVPGVLR-IALNKCPFV 293
Query: 304 MPIDYCKKEH--FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
P+ K+ R ID K + +RQ+ NL RF++ + D D ++Y
Sbjct: 294 SPLSVLGKDDAIARRLDIDMKTAMARYERIRQEINLPSRFRSAVERDEYEQVADPDFRIY 353
Query: 362 -DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+D DR+ + +T Q +LNL F D R PE+ +RY RN+P TL E++K W
Sbjct: 354 AGGFFSDADRERFSIVRKTEASQKLSLNLRFDDSRAPEMVWRYVCRNWPETLDEQQKARW 413
>gi|148927622|ref|ZP_01811085.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
gi|147887031|gb|EDK72536.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
Length = 476
Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 259/472 (54%), Gaps = 6/472 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F YD ET G D DR QFAG R + I + DD LP P+AV +
Sbjct: 5 MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVMV 64
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQK +G+ EAEF + H P T +G+NNIRFDD + R +RNF+D Y W
Sbjct: 65 TGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHDPYEW 124
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+W +G SRWDLLDV+R A P GI WP + +L+ L N +EH AHDA +D
Sbjct: 125 AWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQAHDALSD 184
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYA +A+ ++R+K+PKLFEYL+ R+K + +L++ P+V+ SG + A+ T+++
Sbjct: 185 VYALIAITRMVRDKQPKLFEYLFSIRDKKAVTQLVNPYKPKPIVYTSGRYDANYHKTSVV 244
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLN 298
P+A R + + +L + + F DL ++ KRL +E K V +P+KEV N
Sbjct: 245 FPIAEGSRPGTTFV-YDLRHNPQQFTDLSPEEIKKRLLAKWEERKDPNFVAIPVKEVTHN 303
Query: 299 KCPILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
+ P + P+ ++ +E + ++ ++L +L++ +L + K Y S D +
Sbjct: 304 RAPAVAPLGVLEQGGGWENIQLTNETVRKHLEVLQRSPDLVTKIKTAYESRSFPKSSDAE 363
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
+QLYD F D D+ + + + +L+ + F+D+RLP L RY+ARNFP +LSE+E+
Sbjct: 364 AQLYDSFLNDKDKTHIQAVRNASERELADFHPEFNDKRLPPLLIRYKARNFPRSLSEEEQ 423
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+W +R L ++ + Y + ++ + E + L+ L + + ++P
Sbjct: 424 VEWEAYRATRL-QAELPGYMGAIARIA-KTDPSENTQFLLQELQLWAESIVP 473
>gi|254284002|ref|ZP_04958970.1| exonuclease I [gamma proteobacterium NOR51-B]
gi|219680205|gb|EED36554.1| exonuclease I [gamma proteobacterium NOR51-B]
Length = 408
Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 215/358 (60%), Gaps = 8/358 (2%)
Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL 131
G E +F +IH +VP TC +GYN+IRFDD R YRNF+D Y+ + NGNSRWDL
Sbjct: 4 GDSECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSRWDL 63
Query: 132 LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
+DV RAIYA P+G QWP+RD+G SF+L+DL ANGI H AHDA +DV AT+ L
Sbjct: 64 IDVARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGIAHGAAHDALSDVDATIDLARHF 123
Query: 192 REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKD 251
+ +P LF L R K + L+D+ ++ P+VHVS M+G+ RSN AL+ P+ HP ++
Sbjct: 124 QNVQPALFAELLSMRRKRHVETLMDLGSLRPVVHVSSMYGSDRSNLALVVPLVRHPVNRN 183
Query: 252 SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCK 310
+I +LS + + +A RLFT EL +G V PIK +H+NK P+++ + +
Sbjct: 184 EIICADLSQPPDFLSE-SATDMAARLFTPASELPEGAVRPPIKTIHINKSPVVLNTQWVR 242
Query: 311 KEHFERWGIDHKRCLENLTLLRQQTN-----LRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
E ER G+D + +L +RQ + L+ R + IY++ + D D LYDGFF
Sbjct: 243 GEVAERLGLDGEAHRRHLAEIRQANDKNPEGLKQRLQDIYSERRFAPRTDPDVMLYDGFF 302
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423
+ DR D + +PEQL++ F D RL EL FRYRARNFP TL +E W EH
Sbjct: 303 PNSDRSQFDGLRAASPEQLAS-GWVFEDARLEELLFRYRARNFPATLDAEESARWQEH 359
>gi|148244981|ref|YP_001219675.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
gi|146326808|dbj|BAF61951.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
Length = 473
Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 165/429 (38%), Positives = 250/429 (58%), Gaps = 18/429 (4%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YDYETFG +DR +QFAG+R D + ++ ++F+CKP +D L PE ITGI+
Sbjct: 4 FYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITGIS 62
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ + G++E +F ++IH S P+TC+IGYN+IRFDD ++R YRNF D Y W W N
Sbjct: 63 PQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWHWKN 122
Query: 125 GNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GN+RWD+LDV+R YA D ++W + FKL L+LAN IEH AH+A ADVYA
Sbjct: 123 GNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALADVYA 182
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ +I++ +P+LF Y + R K +++ I + P++H S ++ A+ S T L +
Sbjct: 183 TIAIAKIIKKTQPQLFNYAFSLRKKKTIKEKIKL--FEPMLHTSRVYSATLSCTRLSVAL 240
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD------ELKGLVPVPIKEVHL 297
A+H Y D V NL D + +L+ L +FT ++ E+KGL IKE+
Sbjct: 241 AYHS-YHDRVFVFNLDQDPCILLELNIKTLKTLMFTKNNQSALSKEMKGL---QIKELIF 296
Query: 298 NKCPILMPIDY-CKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIY-NKPYTSSSQ 354
NK P+ +P Y + + ++ ID CL+ L +++ Q + + +Y N S
Sbjct: 297 NKSPMFVPNVYKLESKIIKQLKIDMSTCLQRLEFIKKNQVIISKVVQDLYRNDQQRQPSS 356
Query: 355 DVDSQLYDGFFAD-VDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
DVD LYD F D D+ I ++I + +L + F D RL +L ++ARN+P+ L+
Sbjct: 357 DVDQALYDDFINDNTDKHICNQIQTLSTNELKNFHPKFKDNRLSKLLIHFKARNYPNILT 416
Query: 414 EKEKQDWLE 422
E EK++W +
Sbjct: 417 ENEKEEWFK 425
>gi|213850284|ref|ZP_03381182.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
Length = 225
Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 134/213 (62%), Positives = 163/213 (76%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW +
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 132 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYAT 191
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
+A+ L++ ++P+LF+YLY +R+K++L LID+
Sbjct: 192 IAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDV 224
>gi|260072659|gb|ACX30556.1| exonuclease I [uncultured SUP05 cluster bacterium]
Length = 422
Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 237/402 (58%), Gaps = 12/402 (2%)
Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+P PEA +TGI+PQ + GV+E EF ++I+ F+ PNTCI+GYN+IRFDD ++R Y
Sbjct: 1 MPAPEACAVTGISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLY 60
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIE 170
RNF D Y W W +GN+RWD+LDV+R YA D ++W ++G FKL L+LANGIE
Sbjct: 61 RNFIDPYAWHWKDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIE 120
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
H NAHDA ADV AT+ + +I+E +P+LF+Y + R K + I + P++H SGM+
Sbjct: 121 HANAHDALADVRATIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMY 178
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289
A+ S T L +A+HP Y D I NL D + +LD +L +FT EL G+
Sbjct: 179 PATLSCTRLAVALAYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKR 238
Query: 290 VPIKEVHLNKCPILMPIDY-CKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIY-N 346
+ IK++ NK P+ +P Y + E+ ID ++ L ++ Q+ + + +Y N
Sbjct: 239 LEIKDLIFNKSPMFVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRN 298
Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR 406
+ + DVD LYDGF + D++I +++ R + ++L + F D++L L ++AR
Sbjct: 299 DKERAPTVDVDQALYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKAR 358
Query: 407 NFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYK 448
N+P++L+E E +DW E + RI+ +N SL Y+
Sbjct: 359 NYPNSLTEDEAEDWFE-----TVQGRIQAGENGYTSLDDYYQ 395
>gi|145629537|ref|ZP_01785335.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
gi|144978380|gb|EDJ88144.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
Length = 244
Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/227 (59%), Positives = 166/227 (73%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGIT
Sbjct: 7 FFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGIT 66
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW N
Sbjct: 67 PQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKN 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 127 GNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYAT 186
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
+A+ LI+EK+PKLF+Y ++ R K ++ KL+D +MTPLVHVSGM G
Sbjct: 187 IAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGMLG 233
>gi|330898429|gb|EGH29848.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT]
Length = 307
Score = 290 bits (742), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 142/307 (46%), Positives = 194/307 (63%), Gaps = 4/307 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLLALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D + L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPI 306
CP++ P+
Sbjct: 298 CPVIAPL 304
>gi|325971901|ref|YP_004248092.1| exodeoxyribonuclease I [Spirochaeta sp. Buddy]
gi|324027139|gb|ADY13898.1| Exodeoxyribonuclease I [Spirochaeta sp. Buddy]
Length = 471
Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 157/422 (37%), Positives = 232/422 (54%), Gaps = 31/422 (7%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
YD ETFG D DR AQFAG R D I V +CK +DDYLPDP + IT ITPQ+
Sbjct: 13 YDLETFGLDSRYDRIAQFAGQRTDLNLNPIGEPIVLYCKLSDDYLPDPLSCTITSITPQE 72
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ G+ E++ RI+ FS PNT + G+N IRFDD + RN YRNF D Y+ WDN S
Sbjct: 73 VNKKGICESDLIDRINSEFSKPNTVVAGFNTIRFDDEFIRNALYRNFLDPYKREWDNYCS 132
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDD--GATSFKLQDLALANGIEHVNAHDAKADVYATL 185
RWD++D++RA Y P+GI WP R + G +F+L L AN IE V AHDA DV AT+
Sbjct: 133 RWDIIDLVRAAYDLRPEGIAWPPRKEETGNPTFRLVALTQANNIEQVGAHDALVDVRATI 192
Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW 245
A+ LI+EK+PKL+EY + R K Q++K++ P+++ + F + + LI P+
Sbjct: 193 AIARLIKEKQPKLYEYYFALRAKTQVKKVVQTPFGEPVLYTAAFFSKNEGCSRLITPITH 252
Query: 246 HPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMP 305
+++I +LS D+ L K +G+ + I NKCP + P
Sbjct: 253 MKSNANAIICFDLSKDVAPLLQATEETLLK--------TEGVFTLSI-----NKCPFVSP 299
Query: 306 IDYCKKEHFERWGID-------HKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
++ + + GID H++ + LL N+ ++++ + DVD
Sbjct: 300 LNVLTDQLAIKLGIDKELALFRHQQIVNQTKLLMTARNIEEKYEGV---------DDVDF 350
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYD FF D D++ + I + P+ +L+L F D R+ L FR+ ARN+ L++++K+
Sbjct: 351 QLYDRFFGDADQKRFNLIRQAEPKDKLSLHLDFEDNRVAPLLFRHVARNWSEVLTDEQKR 410
Query: 419 DW 420
W
Sbjct: 411 KW 412
>gi|297519534|ref|ZP_06937920.1| exonuclease I [Escherichia coli OP50]
Length = 213
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/203 (63%), Positives = 155/203 (76%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 11 FLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 130
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT
Sbjct: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190
Query: 185 LALVWLIREKKPKLFEYLYDYRN 207
+A+ L++ ++P+LF+YL+ +RN
Sbjct: 191 IAMAKLVKTRQPRLFDYLFTHRN 213
>gi|330888491|gb|EGH21152.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020]
Length = 363
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 207/318 (65%), Gaps = 5/318 (1%)
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
F+D Y W GNSRWDL+DV+RA YA PDGI WP +D G + KL+ L ANGI+H
Sbjct: 1 FFDPYAREWQGGNSRWDLIDVVRAAYALRPDGIVWPEQD-GRVTLKLERLTAANGIDHGQ 59
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
AHDA +DV AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+
Sbjct: 60 AHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAA 117
Query: 234 RSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPI 292
R+ ++ P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+
Sbjct: 118 RNYLGVVLPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPL 177
Query: 293 KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTS 351
K +H+N+CP++ P+ + E +R +D T L + + +D+ +Y K +
Sbjct: 178 KLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFA 237
Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
+S+D + QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP T
Sbjct: 238 ASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDT 297
Query: 412 LSEKEKQDWLEHRKKMLT 429
LS +E+Q W + ++ L+
Sbjct: 298 LSSEEQQRWQDFCQQRLS 315
>gi|310780268|ref|YP_003968600.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
gi|309749591|gb|ADO84252.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
Length = 487
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/461 (32%), Positives = 261/461 (56%), Gaps = 20/461 (4%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M ++ YDYETFG D DR +QFAGVR D ++ ++ V++CK A+DYLP+PEA I
Sbjct: 1 MKKTYLWYDYETFGADPKRDRISQFAGVRTDMDFKVVDEM-VYYCKVAEDYLPNPEASII 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP+++ G+ E E + + + F+ T IGYN+I+FDD +RN+FYR F D Y
Sbjct: 60 TGITPKESNEKGITENELAEILFKEFTKEGTVTIGYNSIKFDDEVTRNLFYRTFRDPYER 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N SRWD + + +Y P+ ++WP +DDG SF+L++L++ANGI H NAHDAK+D
Sbjct: 120 EWKNNCSRWDFMRAILGVYVMKPELLKWPLKDDGRPSFRLEELSIANGIIHENAHDAKSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ L LI +K P +F+Y ++ R+K+ ++ + + +H+ +G R ++I
Sbjct: 180 VYATIGLAELISKKSPNVFDYFFNLRDKDFVKSELSKDEL--FLHIDFGYGYDRGYASII 237
Query: 241 APVA--WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
+ + K++ + ++ D+ + +D ++ + L+ S+++L+ G+ +K++
Sbjct: 238 YKIGDFINQGDKNAFLFIDILSDVENLEKMDFDEIKEYLYYSNEKLEEIGITRPGLKQIR 297
Query: 297 LNKCPILMPIDYC--KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
+N+ P+++P + K + E ++ K +E + L + ++ F ++ +
Sbjct: 298 INQSPLVIPYNNLREKPKFLEEISVNLKYKMEKIKKLSAKR--KEEFLNVFTREKDKVKI 355
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D +Y F + D++ M + R + + F D++ EL+FR+ RN P L+E
Sbjct: 356 DADLDIYGSFASQWDKKEMAAMHRENYQYIPK----FKDKKYKELYFRFIGRNMPEILTE 411
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGD 450
E +W H K ++ R I+ KN++ L +Y+G+
Sbjct: 412 DEMSEWKRHCYKCISNEREGFQNIDSLKNEILELEKKYRGE 452
>gi|221134294|ref|ZP_03560599.1| exodeoxyribonuclease I [Glaciecola sp. HTCC2999]
Length = 488
Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 249/441 (56%), Gaps = 17/441 (3%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYET+G D P QFA +R D ++ + K DYLP P+AV +TGIT
Sbjct: 8 FLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVTGIT 67
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ L +G E F ++IHQ PNTC++GYN+I+FDD SR F+RNF D Y+ + +
Sbjct: 68 PQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPYQREYLH 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GNSRWDL++++RA YA P+GI+WP D+G SFKL+ L NGI H NAHDA +DV+AT
Sbjct: 128 GNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDALSDVHAT 187
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+A+ LI++++PKLF Y Y R+K + ++++ + PL+ ++ A ++I P+
Sbjct: 188 IAIAQLIQQQQPKLFAYAYQLRSKQAVIRILEQHHGQPLIFINPYRSAKFGCVSIIMPMC 247
Query: 245 WHPRYKDSVIGCNLSGDM--RVFQDLDSVQLAKRLFTS--HDELKGLVPVPIKEVHLNKC 300
HP K++ + +L+ D+ + +DLD++Q + L + ++E + + IK N+C
Sbjct: 248 PHPVNKNATVCIDLTKDIFPLINEDLDTLQRIQFLPKAQRNEETPDIATIVIKH---NQC 304
Query: 301 PILMPIDYCKKEHFERWGIDHKRC---LENLTLLRQQ----TNLRDRFKAIYNKPYTSS- 352
P L PI + E ID + +E+L + Q NL + ++ Y +
Sbjct: 305 PFLAPIKTLSQSRSEALNIDLNKVDQQVEHLKHICQDQESYANLIMTLTQLNSQTYDAEK 364
Query: 353 -SQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
+ DV++ LY GF D ++Q ++ +P +L L R+ ELF R+ ARNF
Sbjct: 365 PATDVEASLYTGGFMNDAEKQFCQQVHMASPNELVNLKNNTPSPRIDELFQRFIARNFLD 424
Query: 411 TLSEKEKQDWLEHRKKMLTRS 431
TLS + W ++ LT +
Sbjct: 425 TLSTDLQSQWYVDCQRRLTNN 445
>gi|226330549|ref|ZP_03806067.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
gi|225201344|gb|EEG83698.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
Length = 204
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/187 (64%), Positives = 144/187 (77%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ F I+DYETFG ALDRPAQFAG+R D + IE V +CKP DDYLP PEAV IT
Sbjct: 7 TSTFYIHDYETFGTHPALDRPAQFAGIRTDMDFNIIEDPLVIYCKPNDDYLPHPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A ++G++EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S
Sbjct: 67 GITPQIAAKNGLIEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP +DG SF+L+ L ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIVWPENEDGFPSFRLELLTKANGISHENAHDAMSDV 186
Query: 182 YATLALV 188
YAT+A+
Sbjct: 187 YATIAMA 193
>gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
3_1_45B]
gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
3_1_45B]
Length = 502
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 168/490 (34%), Positives = 253/490 (51%), Gaps = 38/490 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITG 62
F YDYETFG D DRPAQFAG R + + ++ E+F+C+P +D LP+PE+ +TG
Sbjct: 10 FYWYDYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIFYCRPTEDQLPNPESCLLTG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ GV E+EF+ I + + P T IGYN + FDD +R +F+RNF D Y SW
Sbjct: 70 ITPQYCAEKGVCESEFADLIWERLNTPGTVSIGYNTLGFDDEVNRFLFWRNFLDPYTHSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD------------GATSFKLQDLALANGIE 170
G SRWDL V+ A +A D I+WP ++ FKL+ L ANGIE
Sbjct: 130 AKGCSRWDLFPVVCAAWALRGDTIKWPRWEEIDPIKYPKAEGRKGVCFKLEFLTKANGIE 189
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
H +AHDA +DV AT+ + L+ E++PKL+ + ++ N+ + + +M P+V V+ F
Sbjct: 190 HGHAHDALSDVEATIGMAKLLAEREPKLWRWAFE--NRTTAKVSAAVADMKPVVWVTPKF 247
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVP 289
G +R T + A + K +LS D V Q L ++ +RLF S E +G+
Sbjct: 248 GIARGCTGIAACFF---QEKHDCWMWDLSFDPTVLQSLSYEEIKQRLFPSIKERAQGIER 304
Query: 290 VPIKEVHLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKA 343
+PI+ + N P + + +E +++GID NL L+ QT +
Sbjct: 305 LPIRRLKANASPFVCANLKVLSRERAQKYGIDLDVAAANLQKLKAVAPAVQTIFAELAAE 364
Query: 344 IYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLS--TLNLPFSDRRLPELFF 401
+ + S D D LY GF + D+ +I PE L+ F D++ E+ F
Sbjct: 365 RRSNDAAAPSADPDRSLYSGFASSGDKARFVQIRSMMPEHLAAEAPKFRFDDQKFAEMLF 424
Query: 402 RYRARNFPHTLSEKEKQDW--------LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGK 453
R+RARN+P LS +E + W + R ML S + ++ Q+ SG Y DE
Sbjct: 425 RFRARNWPEMLSAEETERWRQFCADRIMSGRDGMLQLSDYFDQIDEAQA-SGLYD-DERH 482
Query: 454 EGLINALYEY 463
+ ++ ALY++
Sbjct: 483 QQVLEALYDW 492
>gi|261855671|ref|YP_003262954.1| exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
gi|261836140|gb|ACX95907.1| Exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
Length = 495
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 222/443 (50%), Gaps = 34/443 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YD+ET G D DRP QFA +R + + E I+S + + + LP P+AV +TGI
Sbjct: 3 FLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGIL 62
Query: 65 PQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
PQ A G EAEF+ IH P TC +G+N++RFD R +F+RN D Y W
Sbjct: 63 PQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAHEWK 122
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+GNSRWD+LD RA P+GI WP+ + GA + +L+ L N I H NAHDA DV A
Sbjct: 123 SGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVEA 182
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
TLA L+R + PKLFEYL R K + +D VHVSG ++ + ++ A +
Sbjct: 183 TLAFARLMRAQSPKLFEYLLSLRKKAVVADFVDNPERASFVHVSGRISSTLGSASVFANL 242
Query: 244 AWHPRYKDSVIGCN---LSGDMR-----VFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
V G N L D+R V D A+R D +PIK +
Sbjct: 243 G-------QVQGINTQRLLWDLRFDPTEVLDDDMETLAARRFLRDADAQDNQHRLPIKLL 295
Query: 296 HLNKCPILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSS 353
HLN+ P+++P K+ + ER +D +N + Q + + D+ A+ + +S
Sbjct: 296 HLNRAPVVVPNAILKEGDIVERMQLDLDAVQKNTRTMAQFKREVADKLHAVLAEQMAFAS 355
Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLST----------------LNLPFSDRRLP 397
QD + LY+GF +VDR +D R + ++ + + D RLP
Sbjct: 356 QDAECALYEGFMPNVDRYALDDFNRVFDQAMAAGGSAQDEPVTEALRKLMAQSWQDARLP 415
Query: 398 ELFFRYRARNFPHTLSEKEKQDW 420
EL FR+ AR P L+E E+ W
Sbjct: 416 ELVFRFVARLRPDLLNEDERTQW 438
>gi|90409311|ref|ZP_01217406.1| putative exonuclease I [Psychromonas sp. CNPT3]
gi|90309579|gb|EAS37769.1| putative exonuclease I [Psychromonas sp. CNPT3]
Length = 361
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/359 (35%), Positives = 210/359 (58%), Gaps = 3/359 (0%)
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
YRNF D Y+ W NGNSRWD++D++RA YA P+GI WP +D SF+L+ L+ N +
Sbjct: 1 YRNFADPYQREWKNGNSRWDIIDLVRACYALRPEGINWPVDNDDVPSFRLELLSKENALA 60
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
H AHDA +DVYAT+A+ LI+EK+PKL+ Y ++ RNK + + + + + TPL+HVSGMF
Sbjct: 61 HDQAHDAMSDVYATIAVAKLIKEKQPKLYNYYFNLRNKKTVLETLKVGSFTPLMHVSGMF 120
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289
A + + I P+ HP K++VI +L+ D+ + L Q+ + +++ +L +G+
Sbjct: 121 PALQGCISYILPICMHPTNKNAVIVVDLAKDLTNLESLSVEQIRQYMYSKTIDLPEGITR 180
Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
+K +HLNKCP + P + + GID +C ++L +++ L D+ A+YN +
Sbjct: 181 PALKLIHLNKCPFVSPAKTLSESRADELGIDRIQCRKSLNFIKENLALVDKLYAVYNTAH 240
Query: 350 T-SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
+ LY GFF D+Q ++ + + + L+ F+D RL L + YRARN
Sbjct: 241 APKQGLCAEEMLYHGFFNQEDKQQIEDVKHSNWQVLANKTFHFNDARLKTLLWHYRARNA 300
Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
P T+SE+E+ W + + ++Y K+ +L+ E++ D K ++ L+ YLQ++
Sbjct: 301 PETMSEEEQDKWARECQAYVL-DNTQQYIEKIDALALEHQNDVAKIEILQKLHHYLQFL 358
>gi|325276504|ref|ZP_08142261.1| exonuclease I [Pseudomonas sp. TJI-51]
gi|324098364|gb|EGB96453.1| exonuclease I [Pseudomonas sp. TJI-51]
Length = 355
Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 196/306 (64%), Gaps = 19/306 (6%)
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
G SRWDL+D++R YA P+GI+WP +D G TS +L+ L+ ANGI+H +AH+A +DV A
Sbjct: 2 GGTSRWDLIDIVRTAYALRPEGIEWPQQD-GRTSLRLELLSKANGIDHGHAHEALSDVRA 60
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVHVSG F A+R+ ++ P+
Sbjct: 61 TIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHVSGRFSAARNYLGVVLPL 118
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPI 302
AWHP ++++I C+L + + L +RL+T H++L G +PVP+K V +N+CP+
Sbjct: 119 AWHPHNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEDLADGELPVPLKLVQINRCPV 178
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLR--------QQTNLRDRFKAIYNKPYTSSSQ 354
L P+ + +R GID LTLL+ QQ +D+ + IY K + S+
Sbjct: 179 LAPLSVLRPADQQRLGID-------LTLLQSRGEQLADQQAQWQDKLEHIYGKDDFAPSE 231
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D + QLY+GF D DR++ +++ P QL F D RLPEL FRYRARNFP TL+
Sbjct: 232 DPEQQLYNGFIGDRDRRLCEQVRALEPAQLGRGQWLFDDPRLPELLFRYRARNFPDTLTP 291
Query: 415 KEKQDW 420
+E+Q W
Sbjct: 292 EERQRW 297
>gi|257486439|ref|ZP_05640480.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 341
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/296 (42%), Positives = 192/296 (64%), Gaps = 5/296 (1%)
Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
RA YA PDGI WP +D G + KL+ L ANGI+H AHDA +DV AT+AL LIREK+
Sbjct: 1 RAAYALRPDGIVWPEQD-GRVTLKLERLTAANGIDHGQAHDALSDVRATIALARLIREKQ 59
Query: 196 PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIG 255
PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ P+AWHP ++++I
Sbjct: 60 PKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVVLPLAWHPHNRNALIV 117
Query: 256 CNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHF 314
C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+CP++ P+ + E
Sbjct: 118 CDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRCPVIAPLGVLRSEDQ 177
Query: 315 ERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIM 373
+R +D + T L + + +D+ +Y K ++S+D + QLYDGF D DR++
Sbjct: 178 QRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQQLYDGFIGDRDRRLC 237
Query: 374 DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLT 429
+++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q W + ++ L+
Sbjct: 238 EQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQRWQDFCQQRLS 293
>gi|134082476|emb|CAK97283.1| unnamed protein product [Aspergillus niger]
Length = 298
Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 111/175 (63%), Positives = 134/175 (76%)
Query: 33 QWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
++ I EVF+CKPADDYLP P AV ITGITPQ+A G EA F+ RIH F+VP TC
Sbjct: 124 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 183
Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
I+GYNN+RFDD +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP D
Sbjct: 184 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 243
Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
DG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L++ ++P+LF+YL+ +RN
Sbjct: 244 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 298
>gi|317035770|ref|XP_001396951.2| hypothetical protein ANI_1_1434134 [Aspergillus niger CBS 513.88]
Length = 177
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 133/174 (76%)
Query: 33 QWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
++ I EVF+CKPADDYLP P AV ITGITPQ+A G EA F+ RIH F+VP TC
Sbjct: 4 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 63
Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
I+GYNN+RFDD +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP D
Sbjct: 64 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 123
Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206
DG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L++ ++P+LF+YL+ +R
Sbjct: 124 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHR 177
>gi|226330550|ref|ZP_03806068.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198]
gi|225201345|gb|EEG83699.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198]
Length = 274
Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/271 (45%), Positives = 177/271 (65%), Gaps = 4/271 (1%)
Query: 198 LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCN 257
+F+Y ++ R+K +++ LIDI MTP+VHVSGMFGA+RSN +L+AP+AWHP +++VI C+
Sbjct: 1 MFDYFFNLRDKRKVQALIDIPAMTPIVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCD 60
Query: 258 LSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
LS D+ L S QL +RL+T EL PVPIK +H+NKCPI+ P + + + +R
Sbjct: 61 LSADISPLLTLTSDQLRERLYTPRSELAVDEPPVPIKLLHINKCPIVAPQNTLRPQDADR 120
Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLYDGFFADVDRQIMD 374
G+D CL N +L +R++ ++ + P+ S DVDSQ+Y+GFF++ DR M+
Sbjct: 121 IGLDVDTCLNNQAILFSHPEIRNKVVELFAQQTPFVVSD-DVDSQIYNGFFSENDRSAME 179
Query: 375 RILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIE 434
I T P+ L L+L F D R+ LFFRYRARN+P TL+ E+Q WL HRK+MLT ++
Sbjct: 180 IIRSTQPQNLPALDLTFEDARMEPLFFRYRARNYPSTLNYDEQQRWLAHRKEMLTPEKLN 239
Query: 435 EYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
EY N +Q L+ +Y +E K + LY Y Q
Sbjct: 240 EYINTIQLLAEKYSDNEEKLKQLQELYLYAQ 270
>gi|297519535|ref|ZP_06937921.1| exonuclease I [Escherichia coli OP50]
Length = 235
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
Query: 202 LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGD 261
L+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP +++VI +L+GD
Sbjct: 1 LFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGD 60
Query: 262 MRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321
+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + + E +R GI+
Sbjct: 61 ISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 120
Query: 322 KRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRT 379
+ CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+GFF+D DR M +L T
Sbjct: 121 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYNGFFSDADRAAMKIVLET 179
Query: 380 APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLT 429
P L L++ F D+R+ +L F YRARNFP TL E+Q WLEHR+++ T
Sbjct: 180 EPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFT 229
>gi|226490305|emb|CAQ42995.1| exonuclease [Escherichia coli]
Length = 156
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 95/145 (65%), Positives = 110/145 (75%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW +
Sbjct: 70 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQH 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWP 149
NSRWDLLDVMRA YA P+GI WP
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWP 154
>gi|213859584|ref|ZP_03385288.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
Length = 228
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 154/229 (67%), Gaps = 3/229 (1%)
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP
Sbjct: 1 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 60
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQ 359
+L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + P+ ++S +VD+Q
Sbjct: 61 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-ATSDNVDAQ 119
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q
Sbjct: 120 LYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQR 179
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WLEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 180 WLEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 228
>gi|289677836|ref|ZP_06498726.1| exonuclease I [Pseudomonas syringae pv. syringae FF5]
Length = 295
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 159/252 (63%), Gaps = 4/252 (1%)
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
H AHDA +DV AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F
Sbjct: 1 HGQAHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRF 58
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVP 289
A+R+ ++ P+AWHP ++++I C+L D + L +RL+T HD L G +P
Sbjct: 59 SAARNYLGVVLPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELP 118
Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKP 348
VP+K +H+N+CP++ P+ + E +R +D L ++ + D+ A+Y K
Sbjct: 119 VPLKLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKD 178
Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
+S+D + QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNF
Sbjct: 179 DFVASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNF 238
Query: 409 PHTLSEKEKQDW 420
P TLS +E+ W
Sbjct: 239 PDTLSGEEQTRW 250
>gi|303256767|ref|ZP_07342781.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
gi|330999116|ref|ZP_08322837.1| exonuclease [Parasutterella excrementihominis YIT 11859]
gi|302860258|gb|EFL83335.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
gi|329575505|gb|EGG57044.1| exonuclease [Parasutterella excrementihominis YIT 11859]
Length = 494
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 221/447 (49%), Gaps = 22/447 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ ++ YDYETFG + DRP Q+ R D + I + V + + ADDY+P P + +T
Sbjct: 8 STSYLWYDYETFGTEARKDRPVQYGSFRTDTNFNIIGQSMVLYAQLADDYIPSPGSSLVT 67
Query: 62 GITPQKAL--RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GITP + + + EA+F++ I P T IGYNN +DD +R +F+RN +Y
Sbjct: 68 GITPMSLMDEENALAEADFAKVIRDEMGKPGTITIGYNNRNYDDEMTRFMFWRNLLPAYD 127
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ G R+D+ ++ A+YA +P + WP+++DG FKL L AN + H +AHDA +
Sbjct: 128 TEYGEGRGRFDVFLLVIAVYAVAPQILNWPTKEDGTVCFKLDRLTPANNLPHRHAHDASS 187
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
D +ATL L LI K P+L+EY +++ +L++ + PL++V R
Sbjct: 188 DAFATLQLAKLIASKNPRLWEYALSISKSDKIVELLNEKR--PLLYVDRYSLHHRRGLRP 245
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+ +P ++ I +LS D + + +R F + ++ +G+ P+P +
Sbjct: 246 VMPLFENPSVRNEWICWDLSADPNEMWAITEKDMKERSFVTREQKEQGIKPLPFVRIKTK 305
Query: 299 KCPILMP-----IDYCKKEHFER----WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
K P LM I + FE + + + L + L + +L F A+ ++
Sbjct: 306 KQPFLMKGMSVWITKNGQGLFEHPAAYYSENASKILASADRLSELLSL---FMALADRKA 362
Query: 350 TSSSQDV-DSQLYDGFF-ADVDRQIMDRILRTAPEQLSTL--NLPFSDRRLPELFFRYRA 405
++D+ + LY G F ++ D + M PE+++ L F L EL +
Sbjct: 363 EEHAKDIPEEALYSGGFPSNSDARKMATFRALPPEEMADAFDRLEFDREDLAELTLYFMG 422
Query: 406 RNFP-HTLSEKEKQDWLEHRKKMLTRS 431
RN+P + L+ + ++ W H+ L +
Sbjct: 423 RNYPEYALTPETERLWRLHKYNKLVKG 449
>gi|330983976|gb|EGH82079.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 551
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 211/424 (49%), Gaps = 24/424 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFIT 61
++D ET G D+ QFAGV +D + I E+ +P D +P P A +T
Sbjct: 8 LCVFDTETTGLSAHHDQIVQFAGVGLDPELNIIPGDEIVLDVLMRP--DVVPSPGAFAVT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI+ ++ G+ E E + I F T I GYN RFDD RN FYRN D Y+
Sbjct: 66 GISISHLMQHGIPEFEAAGHIRNWFMRQEGTNITGYNTQRFDDEVIRNTFYRNMIDPYQH 125
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
WD GNSR D+L ++ ++A P+ ++WP + DG S KL ++ NGI NAHDA+ D
Sbjct: 126 EWDKGNSRSDILRLVTMVFALRPEMLRWPLK-DGRYSMKLGEMCRENGISLDNAHDARFD 184
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L+ L+R+ P+L+++ +K Q++ L++ + PL V F + + +++
Sbjct: 185 VMATIELMRLVRKANPRLWDHFLSLGDKVQIQNLVNQRK--PLAMVDPFFSREQGHLSIV 242
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ + K + +L D L+ ++ +R+FT +L +G I+ + NK
Sbjct: 243 LPIIYDLSVKTKMYAVDLREDPTELLSLEPSEIRRRMFTKVSDLGEGEGISSIRSISTNK 302
Query: 300 CPILMPIDYCKK--EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
P++ + + + R GID +RCL++ T++ R+R + + + D
Sbjct: 303 QPMVTELSVLRGRDDLTRRAGIDMERCLKHATMIDADKGFRERLQQAFISDF-----DPP 357
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
+Y+G ++ + LR+ +L +++P + + PE+ PH LS +
Sbjct: 358 EDVYEGIYSLGMIGRDEHNLRSRTRRL--ISIPGFEGQRPEIIA-----TDPHELSTMQS 410
Query: 418 QDWL 421
+D L
Sbjct: 411 RDRL 414
>gi|60326832|gb|AAX18929.1| putative exonuclease I [Pseudomonas fluorescens]
Length = 278
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259
++L+ R+K R + ++ + P+VH+SG F A+R +I P+AWHPR ++++I C+L
Sbjct: 1 DWLFQLRSKQ--RVMDQVRLLQPMVHISGRFSAARHYIGVILPLAWHPRNRNALIVCDLH 58
Query: 260 GDMRVFQDLDSVQLAKRLFTS-HDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
D + +LD+ L +RL+T D L+G +PVP+K +H+N+CP++ P+ + E +R
Sbjct: 59 LDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPVVAPLSVLRSEDQQRLH 118
Query: 319 IDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRIL 377
+D + L + Q RD+ IY ++S D + QLYDGF AD DR++ +++
Sbjct: 119 LDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLYDGFIADRDRRLCEQVR 178
Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
P L+ PF D RLPEL FRYRARNFP TL++ E++ WL
Sbjct: 179 EADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERWL 222
>gi|330860011|emb|CBX70338.1| hypothetical protein YEW_LE47370 [Yersinia enterocolitica W22703]
Length = 120
Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 79/110 (71%), Positives = 88/110 (80%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITGIT
Sbjct: 10 FYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
PQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNF
Sbjct: 70 PQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNF 119
>gi|213609520|ref|ZP_03369346.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
Length = 187
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 125/188 (66%), Gaps = 3/188 (1%)
Query: 261 DMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGID 320
D+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + + E +R GI+
Sbjct: 1 DISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRPEDADRLGIN 60
Query: 321 HKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLYDGFFADVDRQIMDRILR 378
+ CL+NL +LR+ +RD+ AI+ + P+ ++S +VD+QLYDGFF+D DR M +L
Sbjct: 61 RQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-ATSDNVDAQLYDGFFSDADRAAMKIVLE 119
Query: 379 TAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKN 438
T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT +++Y N
Sbjct: 120 TEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYAN 179
Query: 439 KLQSLSGE 446
+LQ LS +
Sbjct: 180 ELQMLSQQ 187
>gi|289677835|ref|ZP_06498725.1| exonuclease I [Pseudomonas syringae pv. syringae FF5]
Length = 166
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L A
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAA 165
>gi|149914802|ref|ZP_01903332.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
gi|149811595|gb|EDM71430.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
Length = 459
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 196/424 (46%), Gaps = 36/424 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G D+P QFA + D + + + + C+ A LP P+A+ +T ++
Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIR-CRLAPHILPSPQALVVTRVS 61
Query: 65 PQKALRDGVVEA--EFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P + L D + + EFS+++ +F I +GYN ++FD+ R FY+N + +
Sbjct: 62 PDQ-LTDPNLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYAT 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NGN+R+D+L + A YA PD WP+ D G SFKL LA ANGI NAHDA DV
Sbjct: 121 QFNGNTRFDILPAVYAAYARQPDLFVWPTDDTGRRSFKLDRLAPANGINAHNAHDALGDV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ + LI + P L+ L D N ++ R +++ P V+ G
Sbjct: 181 EATIHIARLIATRSPALWSELID--NAHKARVQAKLESFRPYELVTRFGGG--------- 229
Query: 242 PVAWHPR-YKDSVIGCNLSGDMR-VFQDLDSVQLAKRLFTSHDELKGLV---PVPIKEVH 296
PR Y G + R F DLD+ + L S + + V P I+ V
Sbjct: 230 ----EPRSYMGCFCGYSHGNSARAAFFDLDAADPSDFLEASDEAIFAAVDATPKIIRGVS 285
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN--LRDRFKAIYNKPYTSSSQ 354
NK P ++ EH R + + N RQ+ L RF + P +
Sbjct: 286 TNKAPAILEHTAPSAEHLRRAAV-----IANAPEFRQRVGAALAARFVEDPDAP----PK 336
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
V+ Q+Y F+++ D+Q++ R A + + SD RL +L R A P L+
Sbjct: 337 PVERQIYGEFYSNADKQLLQEFQRAAWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLNA 396
Query: 415 KEKQ 418
KE +
Sbjct: 397 KEAE 400
>gi|254451818|ref|ZP_05065255.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
gi|198266224|gb|EDY90494.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
Length = 500
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 127/422 (30%), Positives = 193/422 (45%), Gaps = 36/422 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G A D+P QFA + D + + + + C+ A LP P+A+ +T +T
Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDRVNIR-CRLAPHILPSPQALVVTRVT 61
Query: 65 PQKALRDGVVEA--EFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P + L D + + EFS+++ + I +GYN I+FD+ R FYRN + +
Sbjct: 62 PDQ-LTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNLSPNVYAT 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NGN+R+D+L + A Y PD + WP D G SFKL LA ANG + NAHDA DV
Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240
AT+ + LI + P L+ L D N ++ R +++ P V+ G RS T
Sbjct: 181 EATIHIARLIAMRSPALWSELLD--NAHKARVQAKLESFRPYELVTRFGGGEPRSYTGCF 238
Query: 241 APVAWHPRYKDSVIGCNLSGDMR---VFQDLDSVQLAKRLFTSHDELKGLV---PVPIKE 294
C S R F DLD+ A+ + S + + V P I+
Sbjct: 239 ---------------CGYSQGNRAQAAFFDLDAADPAEFVEASDEAIFAAVDATPKIIRG 283
Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
V NK P L+ +EH R + + LR + RF + P +
Sbjct: 284 VSTNKAPALLEHTAPSEEHLRRAAVIAE---APAFRLRVGAAMAARFVEDPDAP----PK 336
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
V+ Q+Y F+++ D+Q++ + + +D RL +L R A + P LS
Sbjct: 337 PVERQIYGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLSS 396
Query: 415 KE 416
+E
Sbjct: 397 EE 398
>gi|254451927|ref|ZP_05065364.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
gi|198266333|gb|EDY90603.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
Length = 464
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 121/453 (26%), Positives = 204/453 (45%), Gaps = 47/453 (10%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F +D ET G A D+P QFA + D +++IE ++ C+ A +P P A+ +TG+
Sbjct: 2 NFAFFDLETTGVSPAFDQPLQFAAILTDSDFKEIERVDMR-CRLAPHIIPSPHALAVTGL 60
Query: 64 TPQKALRDGVVEA-EFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P + + + E EF++ + + S + I G+N+IRFD+ R FY+N +
Sbjct: 61 RPAELIDPALPELFEFTQSLTELVSRWSPAIWTGFNSIRFDEEMLRQAFYQNLQAEVFAT 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NGN+R+D++ + ++ D ++WP + G FKL LA NG E NAHDA DV
Sbjct: 121 QFNGNTRFDIMTAVFGVWHRHRDLLEWPVDETGKVRFKLDRLAPLNGFEGHNAHDALGDV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
A + + LI ++ P L+ L R+K ++ ++ ++PL + G FG
Sbjct: 181 EAIIHIAQLIAQRDPALWTELLASRDKGYVKA--RLERLSPL-ELVGRFGGGPPK----- 232
Query: 242 PVAWHPRYKDSVIGC-----NLSGDMRVFQDLDSVQLAKRLFTSHDELKG---LVPVPIK 293
++ GC + + + F DLD+ A + S D VP I+
Sbjct: 233 ----------AITGCLCGYSSKNANQAFFFDLDAADPADLIDASDDTFVAALEAVPWAIR 282
Query: 294 EVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR----FKAIYNKPY 349
+ +NK P+L+ EH R L+ + R+R A Y
Sbjct: 283 SLTINKAPVLLEPAATTDEHERR-----------ARLIAEAPQFRERVVQTMAARYPTKP 331
Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP 409
+ V+ Q+++GF++ D++ + Q + F D RL +L R A
Sbjct: 332 DAEPIAVEKQIFNGFYSWADKERLKVFQGADWPQRQEIVATFDDSRLRQLGRRLVAFYAH 391
Query: 410 HTLSEKEKQ---DWLEHRKKMLTRSRIEEYKNK 439
LSE+E++ +WL R + +R E K
Sbjct: 392 DLLSEEEQRQYGEWLHGRWQAASRLETEWMTTK 424
>gi|213023524|ref|ZP_03337971.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 131
Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats.
Identities = 66/106 (62%), Positives = 78/106 (73%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGIT
Sbjct: 12 FLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 71
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
PQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RN F
Sbjct: 72 PQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNYF 117
>gi|86139894|ref|ZP_01058460.1| exonuclease I [Roseobacter sp. MED193]
gi|85823523|gb|EAQ43732.1| exonuclease I [Roseobacter sp. MED193]
Length = 459
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 190/424 (44%), Gaps = 40/424 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G D+P QFA + D + + + + C+ A LP P+A+ +T +T
Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDRVNIR-CRLAPHILPSPQALVVTRVT 61
Query: 65 PQKALRDGVVEA-EFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
P + + + EFS+++ +F I +GYN ++FD+ R FY+N + +
Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+R+D+L + A Y P + WP+ D G SFKL LA ANG NAHDA DV
Sbjct: 122 FNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDVE 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LI + P L+ L D N ++ R +++ P V+ G
Sbjct: 182 ATIHIARLIATRSPALWSELID--NAHKARVQAKLESFRPYELVTRFGGG---------- 229
Query: 243 VAWHPRYKDSVIGC-----NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV---PVPIKE 294
PR S +GC + + F DLD+ ++ L S + + V P I+
Sbjct: 230 ---EPR---SYVGCFCGYSHGNSAQAAFFDLDAADPSEFLGASDEAIFAAVDATPKIIRG 283
Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLT--LLRQQTNLRDRFKAIYNKPYTSS 352
V NK P L+ EH R I + N L R + +RF + P
Sbjct: 284 VSTNKAPALLEHTAPSAEHLHRATI-----IANAPEFLRRVGAAMANRFVEDSDAP---- 334
Query: 353 SQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
+ V+ Q+Y F++ D+Q++ + + SD RL +L R A P L
Sbjct: 335 PKPVERQIYGEFYSSADKQLLQEFQHATWPRRQEIVASLSDPRLRQLGRRLVAFYSPELL 394
Query: 413 SEKE 416
+ E
Sbjct: 395 TADE 398
>gi|254453670|ref|ZP_05067107.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
gi|198268076|gb|EDY92346.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
Length = 459
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 188/423 (44%), Gaps = 38/423 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F YD E G A D+P QFA + D ++ ++E + C+ A +P P A+ +TG+
Sbjct: 3 FAFYDLEITGLSPAFDQPLQFAAILTDDEFREVERVNLR-CRIAPHIIPSPWALAVTGVR 61
Query: 65 PQKALRDGVVEA-EFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
P + L G+ EF++ I + I G+N+IRFD+ R FY+N + +
Sbjct: 62 PAQLLDAGLPTLFEFTQEIGALIDRWSPAIWTGFNSIRFDEEVLRQAFYQNLSPNVYATQ 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+R+D+L + A Y PD + WP D G S KL LA ANG NAHDA DV
Sbjct: 122 FNGNTRFDILPAVYAAYVREPDLLVWPEDDTGRRSLKLDRLAPANGFNAHNAHDALGDVE 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LI + P L+ L D N + R +++ P V+ G
Sbjct: 182 ATVHIARLIATRSPALWSELLD--NAQKARVQAKLESFRPYELVTHFGGG---------- 229
Query: 243 VAWHPRYKDSVIGCNLSG------DMRVFQDLDSVQLAKRLFTSHDELKGLV---PVPIK 293
PR S +GC L G F DLD+ A+ + S + L V P I+
Sbjct: 230 ---EPR---SYVGC-LCGYSQGNSAHAAFFDLDAADPAEFVEASDEALFAAVDATPKIIR 282
Query: 294 EVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
V NK P L+ EH R + + LR + RF + P
Sbjct: 283 GVSTNKAPALLEHTAPSAEHLRRAAVIAEAPAFR---LRVGAAMAARFVEDPDAP----P 335
Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
+ V+ Q+Y F+++ D+Q++ + + +D RL +L R A + P L+
Sbjct: 336 KPVERQIYGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLN 395
Query: 414 EKE 416
+E
Sbjct: 396 LEE 398
>gi|260577353|ref|ZP_05845324.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
gi|259020426|gb|EEW23751.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
Length = 457
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 188/424 (44%), Gaps = 32/424 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G A D+P QFA +R D +IE + C+ A +P P+A+F+TG+T
Sbjct: 3 FVFYDLETTGISPAFDQPLQFAAIRTDDSLVEIERVNLR-CRIAPHIIPSPQALFVTGVT 61
Query: 65 PQKALRDGVVEA--EFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
P + L D + + EF++ I + P T + G+N IRFD+ R FY+N +
Sbjct: 62 PAQ-LVDPELPSLFEFTQTIMELTERWAPATWV-GFNTIRFDEEVLRQAFYQNLQPNIYA 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ NGN+R D+L + A++ + + WP+ D T+FKL LA ANG NAHDA D
Sbjct: 120 TQLNGNNRLDILTAVYAVWCRNRGLMHWPTDDTDRTTFKLDRLAPANGFNAHNAHDALGD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ + LI + P L+ + R+K + +++ LV G G R+
Sbjct: 180 VEATIHIAGLIAKGDPALWSAILHNRDKQNVTAILESFRPVELVLRFGG-GPPRAYVGCF 238
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
A + +GD V D L + + +S P I+ + NK
Sbjct: 239 CGTAAGNPTNAAFFDLE-AGDPEVLIKADDTALFEAVDSS--------PQIIRSIATNKV 289
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR----FKAIYNKPYTSSSQDV 356
P L PI +H L + R R A Y + + V
Sbjct: 290 PSLFPIASPDPDH-----------LRKAAFIAANPAFRARVGQAMAARYVEDPDAPPPPV 338
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
+ Q+Y GFFA DR ++ R + + +D RL +L R A + P +S E
Sbjct: 339 EKQIYGGFFAKADRDLLADFQRADWRRRQEIANVLTDVRLRQLGRRLIAFHAPELMSSDE 398
Query: 417 KQDW 420
+ +
Sbjct: 399 AKQF 402
>gi|320541129|ref|ZP_08040515.1| putative exonuclease I [Serratia symbiotica str. Tucson]
gi|320028808|gb|EFW11101.1| putative exonuclease I [Serratia symbiotica str. Tucson]
Length = 107
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/100 (66%), Positives = 78/100 (78%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N F +DYETFG+ ++DRPAQFAGVR D + IE V +C PADDYLP+PEAV ITG
Sbjct: 8 NTFYFHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
ITPQ+A GV EAEF+R+IHQ FS+P TCI+GYNNIRFD
Sbjct: 68 ITPQQARAKGVNEAEFARQIHQAFSMPGTCILGYNNIRFD 107
>gi|320086501|emb|CBY96272.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 157
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 105/154 (68%), Gaps = 3/154 (1%)
Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIYNK--PYTSSSQDVDSQLYDGFFADVDRQIMD 374
W + + CL+NL +LR+ +RD+ AI+ + P+ ++S +VD+QLYDGFF+D DR M
Sbjct: 5 WELTRQHCLDNLKVLRENPQVRDKVVAIFAEAEPF-AASDNVDAQLYDGFFSDADRAAMK 63
Query: 375 RILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIE 434
+L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT ++
Sbjct: 64 IVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQ 123
Query: 435 EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 124 QYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 157
>gi|254510953|ref|ZP_05123020.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
gi|221534664|gb|EEE37652.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
Length = 469
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/422 (26%), Positives = 192/422 (45%), Gaps = 30/422 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +D ET G A D+P QFAG+ D E++E ++ C+ + LP P A+ +TG++
Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDIR-CRLSPHILPAPWALAVTGVS 60
Query: 65 PQKALRDGVVEA-EFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P + A EFS+ + P T GYNNI FD+ R +FY+N + + +
Sbjct: 61 PGMLSNPNLPSAFEFSQEVSSLIHRWGPATWT-GYNNIAFDEQMLRQMFYQNLHPNLYLT 119
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+GN R D++ ++ A + + D + WP+ + G +FKL LA ANG N HDA ADV
Sbjct: 120 QMDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADV 179
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ + LIR++ P ++ R+KN ++ ++ + L+ FGA+ A
Sbjct: 180 EATINIAKLIRDRAPDVWVQSLRNRSKNNVQDIMQSGQVLTLIE---RFGATPPRAYRGA 236
Query: 242 PVAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
+P ++++ +L D D+ +A + S P ++ V +N
Sbjct: 237 YAGQNPDNRNALALMDLDLVDPNTLDPTDASAIANAVSAS--------PKTVRTVAINNA 288
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ--DVDS 358
P L + ID L LR +L+ + + S+ V+
Sbjct: 289 PNLFEV-----------PIDDSDLLNRAEDLRGNHDLQTALGNALAERFADRSEPDQVEQ 337
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
++Y GF++ D++ +++ + + + F DRRL L R N P LS +
Sbjct: 338 KIYAGFYSTDDKKRLNQFEFASWAKRIEIAQAFEDRRLQWLASRLIYLNEPSLLSRYAQD 397
Query: 419 DW 420
W
Sbjct: 398 YW 399
>gi|330937753|gb|EGH41635.1| exonuclease I [Pseudomonas syringae pv. pisi str. 1704B]
Length = 136
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/136 (47%), Positives = 79/136 (58%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMR 136
W GNSRWDL+DV+R
Sbjct: 121 EWQGGNSRWDLIDVLR 136
>gi|330813552|ref|YP_004357791.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
gi|327486647|gb|AEA81052.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
Length = 473
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/486 (25%), Positives = 221/486 (45%), Gaps = 43/486 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++ YD+ET GR D+ Q V V+ ++++++ E C +P+P A+ +
Sbjct: 2 NYAFYDFETTGRSGTWDQIIQVGAVLVNAEFQELDRFEAK-CGLRPGLVPEPGALLVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
TP + + ++ Q F I IGYN+I FD+ + R ++ D Y +
Sbjct: 61 TPDMLRKTNLSHYGLVDQMLQTFKKWTPAIFIGYNSIGFDEEFLRKTLFKTLNDPYLTQF 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN R D+L + R + + PD I+ P+ D G FKL LA NGIEH NAHDA DV
Sbjct: 121 -NGNKRGDILGLARTAHLYYPDCIKTPTSDKGNPVFKLDQLAPMNGIEHGNAHDAIGDVL 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + +I +K P +++ +K ++ + +QN +G +R ++
Sbjct: 180 ATIGIAKIISDKAPAVWKASLMTTSKAEVNTI--VQNEKLFCFNEYFYGKARP--YVVTF 235
Query: 243 VAWHPRYKDSVIGC-NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+ +HP+Y S C +L D + ++ L K + S P I+ V NK P
Sbjct: 236 LGFHPKY--SWPQCFDLKEDPNTYFNMSMEDLKKAMKKS--------PKIIRSVKNNKHP 285
Query: 302 ILMPIDYCKKEHFERWG-IDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
I+M + E+FE + + + +E L++ +++ I + +D+DSQL
Sbjct: 286 IIMNPKFG--ENFEGYKQLGMAKLIERAELIKNNEEFKNKVARILEEE-AQEKEDLDSQL 342
Query: 361 --------YDGFFA-DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
Y G FA + D+ M ++ + + F D+R R P
Sbjct: 343 DVQAEESIYSGGFASEQDKSTMKTFHQSDWKDKLLIADKFKDQRFNYFAKRLMYEENPSI 402
Query: 412 LSEKEKQDWLEHR---KKMLTR-----SRIEEYKNKLQSLSGEYKGDEGKE--GLINALY 461
L K+ D + HR K++L+ + I + N+L +L +Y+ + E ++N L
Sbjct: 403 LP-KDMHDEI-HRAIAKQILSTNDEKWNTIPKAYNELDNLRAKYEEENDTERLAMMNDLN 460
Query: 462 EYLQWV 467
+L+ +
Sbjct: 461 NFLEEI 466
>gi|307069516|ref|YP_003877993.1| putative exonuclease I [Candidatus Zinderia insecticola CARI]
gi|306482776|gb|ADM89647.1| putative exonuclease I [Candidatus Zinderia insecticola CARI]
Length = 471
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 1/255 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F+ YDYETF + P+QFA +R + + I+ ++ +CKP ++P P+++ + I
Sbjct: 5 NFLWYDYETFNLNKNFTFPSQFASIRTNLNLKIIKKYKIIYCKPDGSFMPCPKSILLNKI 64
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
PQ + G+ E +F+ +I++ P T IGYNNI FDD +R +F+RN + Y W
Sbjct: 65 LPQYCEKYGIKEYKFANKINKIMLKPYTINIGYNNINFDDIITRFLFWRNLLNPYEREWK 124
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N S +D ++++ IY + + ++W + + SFKL D++ NG + H+A DV A
Sbjct: 125 NKCSTYDFFNIIKIIYFINYNSLKWFKKKNKKISFKLSDISKINGYLNKFFHNALFDVNA 184
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
TL +I++K KLF RNK + K I + +++S + ++ P+
Sbjct: 185 TLFCAKIIKKKNFKLFYKFIKLRNKKNIIKNILFKKKV-FLYLSNKYPFFEKEIFILLPL 243
Query: 244 AWHPRYKDSVIGCNL 258
+ K+ +I N+
Sbjct: 244 FIDNKNKNKLICLNI 258
>gi|154252272|ref|YP_001413096.1| exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
gi|154156222|gb|ABS63439.1| Exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
Length = 468
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 178/409 (43%), Gaps = 46/409 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV +D ET G D+ FA +R D +I+ E + +P P A++ G++
Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDADLNEIDRFEAH-SRLLPHVVPHPFALYTNGLS 61
Query: 65 PQKALRDGV----VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ DG+ V + RR + S + +GYN+IRFD+ R F++ + +Y
Sbjct: 62 IGRLTDDGLPSHYVMVQTIRR--KLLSWSPSIFVGYNSIRFDEEMLRQAFFQTLHPAYLT 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
S ++GN R D L +M A A SP + P G +F+L+ LA ANGIEH AHDA AD
Sbjct: 120 S-NHGNCRADALGLMTAAAALSPSCLLVPFGATGRPTFRLEQLASANGIEHTRAHDAMAD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V ATL L + E+ +L++ + K + +D ++ L SN A
Sbjct: 179 VLATLGLCRCVYERSSELWQRFVRFSKKATVADFVDSEDAFILTEFF-------SNEAYH 231
Query: 241 APVAW---HPRYKDSVIGCNLSGDMRVFQDLDS----VQLAKRLFTSHDELKGLVPVPIK 293
APV P + + L GD+ F + V+LA++ P PI+
Sbjct: 232 APVVCLGRDPEQPNGRLCLRLDGDVGRFYTMSDEDLRVELARK------------PSPIR 279
Query: 294 EVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS-- 351
+N P L + + + GID L+ + ++ F A Y S
Sbjct: 280 RFRINAAPTLTALYDARDQMLN--GID----LDEVETRARRVKDDPTFCAHLISAYASIR 333
Query: 352 ----SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRL 396
S+ V+ Q+YD F D M+R + ++ ++ F D RL
Sbjct: 334 GPHAPSRHVEEQIYDRFPGPDDEARMERFHKVGWREVLSIVQSFEDERL 382
>gi|154705994|ref|YP_001424798.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
gi|154355280|gb|ABS76742.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
Length = 458
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 19/283 (6%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ ++ ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMNQE-AMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
+FGA + A + + H YK+ + L + + +DS+
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRLDREELLSTTVDSI 276
>gi|29654660|ref|NP_820352.1| exonuclease [Coxiella burnetii RSA 493]
gi|161831411|ref|YP_001597205.1| exonuclease [Coxiella burnetii RSA 331]
gi|165924153|ref|ZP_02219985.1| exonuclease [Coxiella burnetii RSA 334]
gi|29541928|gb|AAO90866.1| exodeoxyribonuclease I [Coxiella burnetii RSA 493]
gi|161763278|gb|ABX78920.1| exonuclease [Coxiella burnetii RSA 331]
gi|165916402|gb|EDR35006.1| exonuclease [Coxiella burnetii RSA 334]
Length = 458
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 19/283 (6%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ ++ ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMNQE-AMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
+FGA + A + + H YK+ + L + + +DS+
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRLDREELLSTTVDSI 276
>gi|212212262|ref|YP_002303198.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
gi|212010672|gb|ACJ18053.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
Length = 458
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 19/283 (6%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQML-SGKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCRRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ ++ ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMNQE-AMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
+FGA + A + + H YK+ + L + + +DS+
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRLDREELLSTTVDSI 276
>gi|153209510|ref|ZP_01947415.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
gi|212218768|ref|YP_002305555.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
gi|120575335|gb|EAX31959.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
gi|212013030|gb|ACJ20410.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
Length = 458
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 19/283 (6%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQML-SGKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ ++ ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMNQE-AMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
+FGA + A + + H YK+ + L + + +DS+
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRLDREELLSTTVDSI 276
>gi|254374578|ref|ZP_04990059.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
gi|151572297|gb|EDN37951.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
Length = 482
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSR--DDG--ATSFKLQDLALANGI-EHVNAHDAKA 179
G SR DL ++ Y F + + WP +DG TS KL++L N + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVSGIF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2]
gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2]
Length = 471
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 180/386 (46%), Gaps = 43/386 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YD ET G + A D+ FA +R D + +I+ T + +D +P P A +T
Sbjct: 4 FLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVISL-RNDIVPSPGAFITHRLT 62
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P+ L+DG+ E + IH+ + P+T IGYN++ FDD + R FYRN D Y + N
Sbjct: 63 PED-LKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQYAN 121
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVYA 183
+R DLL + F PDGI WP DD A S +L+ ++ N ++ AHDA DV A
Sbjct: 122 DCARMDLLPIATLYRIFKPDGIHWPVIDDKA-SMRLELISEKNNLVQSGRAHDAMTDVEA 180
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT---------PLVHVSGMFGASR 234
TLAL + +K +++ Y D+ +K + +D + + VS FG+
Sbjct: 181 TLALARRLSGQK-RMWNYCLDFFDKKNDQARLDAVDEVFQSIFGRHRLCIMVSVSFGSDL 239
Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKE 294
+ A + + Y + + L ++ + DS L + E K + +P +
Sbjct: 240 TYMAPVLSLGHSTPYANQSLWLRLDKELVLPFKPDSGDGPFVLRKRYGEAK--IVLPSLD 297
Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI------YNKP 348
N+ L P H+ C +N+ +L+ +D F+ + + P
Sbjct: 298 RFWNR---LTP-------------SQHQVCEKNIAMLKAN---QDEFQKLVIHHRSFKYP 338
Query: 349 YTSSSQDVDSQLY-DGFFADVDRQIM 373
+ D+D+ LY DGFF+ V+++ M
Sbjct: 339 FV-PDLDLDASLYQDGFFSSVEKKEM 363
>gi|27375179|ref|NP_766708.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
gi|27348315|dbj|BAC45333.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
Length = 468
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 167/373 (44%), Gaps = 28/373 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV +D ET G D+ FA VR D ++ E + LP P A+ G+
Sbjct: 3 FVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFETR-SRLQPHVLPHPSALRTNGL- 60
Query: 65 PQKALRDGVVEAEFS-----RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
P ++L D + + ++ RR S +G+N+IRFD+ R+ ++ Y +Y
Sbjct: 61 PIESLTDSSLPSHYTMVGDIRRT--LISWSPAVFVGFNSIRFDEEMLRHALFQCLYPAYL 118
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
S ++ N R D L ++ A A SP + P ++G +F+LQ LA ANG+ H AHDA +
Sbjct: 119 TS-NHRNCRADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAANGVAHARAHDAMS 177
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV ATL L L+ + P+L++ + NK + I++++ L FG +T++
Sbjct: 178 DVLATLELSRLVYRRSPELWQRFVRFSNKATVADFIEVEDGFVLTE---FFGGQAYHTSV 234
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
+ + P + + +L+ DM + ++L L P PI+ +N
Sbjct: 235 VC-IGRDPDQANGRLCLSLNEDMGRLAAMSDLELQVHLTQK--------PSPIRRFRINA 285
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY---NKPYTSSSQDV 356
P L Y EH G + L++ T L R A Y +PY S +
Sbjct: 286 APTLTAF-YDAPEHMLDGG-SMGATGDRACLMKADTGLCARLVAAYMAAREPYALSPH-L 342
Query: 357 DSQLYDGFFADVD 369
+ ++Y GF D
Sbjct: 343 EERIYSGFPGPAD 355
>gi|332678483|gb|AEE87612.1| Exodeoxyribonuclease I [Francisella cf. novicida Fx1]
Length = 482
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDFDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSR--DDG--ATSFKLQDLALANGI-EHVNAHDAKA 179
G SR DL ++ Y F + + WP +DG TS KL++L N + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVSGIF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|241668749|ref|ZP_04756327.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877280|ref|ZP_05249990.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843301|gb|EET21715.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 482
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 126/264 (47%), Gaps = 16/264 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 FLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDG----ATSFKLQDLALANGI-EHVNAHDAKA 179
G SR DL ++ Y F D ++WP D S KL++L N + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQRKISLKLENLNTENNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKN-------QLRKLIDIQNMT--PLVHVSGMF 230
DV T+ L +R PK++++L NK QL +++ + + VSG+F
Sbjct: 185 DVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLNIGVEVGGIGYRQAIAVSGVF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVI 254
G + + I + H YK+ I
Sbjct: 245 GFKNNFMSAILDIGQHRHYKNQEI 268
>gi|289812334|ref|ZP_06542963.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 78
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/77 (68%), Positives = 62/77 (80%)
Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
+F+CKPADDYLP P AV ITGITPQ+A G EA F+RRIH F+VP TC++GYNN+RF
Sbjct: 1 MFYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRF 60
Query: 102 DDYYSRNIFYRNFYDSY 118
DD +RNIFYRNFYD Y
Sbjct: 61 DDEVTRNIFYRNFYDPY 77
>gi|167626316|ref|YP_001676816.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596317|gb|ABZ86315.1| Exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 482
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 129/268 (48%), Gaps = 16/268 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 FLFYDSETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDG----ATSFKLQDLALANGI-EHVNAHDAKA 179
G SR DL ++ Y F D ++WP D S KL++L N + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQPKISLKLENLNTENNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL---IDIQNMT--PLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L +++ + + VSG+F
Sbjct: 185 DVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLDISVEVGGIGYRQAIAVSGVF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNL 258
G + + I + H YK+ I L
Sbjct: 245 GFKNNFMSAILDIGQHRHYKNQEIFLRL 272
>gi|332184270|gb|AEE26524.1| Exodeoxyribonuclease I [Francisella cf. novicida 3523]
Length = 482
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 135/500 (27%), Positives = 211/500 (42%), Gaps = 65/500 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 FLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPIATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANGI-EHVNAHDAKA 179
G SR DL ++ + F D ++WP D S KL++L N + AHDA
Sbjct: 125 GCSRADLFPIVTCYHLFCNDVLKWPKILDEEGQQKISLKLENLNTENNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L ++ PK++++L NK N L +L I + VSG+F
Sbjct: 185 DVIVTVELAKKLKIANPKMWQFLLTKFNKQNDENTLAQLDIGLEIGSVGYRQAIAVSGVF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
G + + I + H YK+ +F LDS LF+ E G +
Sbjct: 245 GFKNNFMSAILDIGQHRHYKNQ----------EIFLRLDSY-----LFSEFIEEFGSLEA 289
Query: 291 PIKEVHLNK----CPILMPIDYCKKEHFERWGIDHKRCLE-NLTLLRQQTNLRDRFKAI- 344
+ LNK P+++P K R D ++ N ++ + F
Sbjct: 290 EHWRLTLNKKWGDIPLILP---AKTRFVGRLPQDRLDLIKSNKEFIKDNQEIFANFVDYV 346
Query: 345 --YNKPYTSSSQDVDSQLYDG-FFADVDRQIMDRI----LRTAPEQLSTLNLPFSDRRLP 397
Y P + D+D+ +Y F + D + D+ +R + L+ L + DR +
Sbjct: 347 LEYKYPEIENI-DIDAAIYQSDFMSAADERGCDKFHSLPIRQKAQMLNQLPKSYYDRAV- 404
Query: 398 ELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQSLS 444
+ R P ++ E QD+L +H+ K TR +E+ ++Q L
Sbjct: 405 RIIGRLDFSKLPDK-AQMEFQDYLNKIVSLDNNELLIDHKGK--TRKTLEDIYQEMQDLR 461
Query: 445 GEYKGDEGKEGLINALYEYL 464
E ++ L+ L EYL
Sbjct: 462 MNRNLTEEQQSLLYELEEYL 481
>gi|145629536|ref|ZP_01785334.1| exonuclease I [Haemophilus influenzae 22.1-21]
gi|144978379|gb|EDJ88143.1| exonuclease I [Haemophilus influenzae 22.1-21]
Length = 175
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
+H+NKCPIL P E R GID + CL+NL LR ++R++ I+N+ +S
Sbjct: 1 MHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN 60
Query: 355 D-VDSQLYDGFFADVDRQIMDRILRTAP-EQLSTLNLPFSDRRLPELFFRYRARNFPHTL 412
D V+++LY+GFF++ D+ M ILR+ P E+LS L F D+R+ EL F YRAR+F TL
Sbjct: 61 DNVETELYNGFFSNADKNNMA-ILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTL 119
Query: 413 SEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+ E+ W ++R+ L +S + E+++ LQ L+ E+ + K L+ +YEY
Sbjct: 120 TRAEQIKWKKYRQNKLEKSAV-EFESSLQRLAEEHSDNSEKLSLLQQVYEY 169
>gi|257486438|ref|ZP_05640479.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 127
Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats.
Identities = 58/127 (45%), Positives = 71/127 (55%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNS 127
W GNS
Sbjct: 121 EWQGGNS 127
>gi|208779832|ref|ZP_03247176.1| exonuclease family protein [Francisella novicida FTG]
gi|208744287|gb|EDZ90587.1| exonuclease family protein [Francisella novicida FTG]
Length = 482
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 126/278 (45%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y F + + WP D K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL---IDIQN--MTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L +++ N + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGNRKYKQAIAVSGVF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|134302180|ref|YP_001122149.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
gi|134049957|gb|ABO47028.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
Length = 482
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 124/278 (44%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y F + + WP D K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGIF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|118497767|ref|YP_898817.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
U112]
gi|194323739|ref|ZP_03057515.1| exonuclease family protein [Francisella tularensis subsp. novicida
FTE]
gi|118423673|gb|ABK90063.1| exodeoxyribonuclease I [Francisella novicida U112]
gi|194322103|gb|EDX19585.1| exonuclease family protein [Francisella tularensis subsp. novicida
FTE]
Length = 482
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 124/278 (44%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y F + + WP D K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGVF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|254373125|ref|ZP_04988614.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570852|gb|EDN36506.1| exodeoxyribonuclease I [Francisella novicida GA99-3549]
Length = 482
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 124/278 (44%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y F + + WP D K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGVF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|262276726|ref|ZP_06054519.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
gi|262223829|gb|EEY74288.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
Length = 473
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 173/375 (46%), Gaps = 30/375 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++V YD+ET GR D+ Q + V+ ++ ++ E C +P+P A+ +
Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEAR-CSLKPGTVPEPGALLVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
TP + + + + + F + + IGYN++ FD+ + R F+++ D Y +
Sbjct: 61 TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVY-LTN 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN R D+L ++R+ + + P+ ++ P + G FKL +A NGI H NAHDA DV
Sbjct: 120 TNGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVL 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + +I +K P +++ +K + ++ + + + +G +R +++
Sbjct: 180 ATMGMAKIIADKAPSVWKASLMTMSKQDVGNIVQKEKLFCVNEY--FYGKARP--FVVSF 235
Query: 243 VAWHPRYKDSVIGC-NLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
V HP Y + C +L D + +D L + S P ++ V NK P
Sbjct: 236 VCNHPVY--NWPQCFDLKNDPEDYFKMDMSTLKDAMKKS--------PKLLRSVKDNKHP 285
Query: 302 ILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
I+M +Y + +++ GI + E ++Q + AI + QD+DSQL
Sbjct: 286 IIMNPNYATNFDTYKQIGI--SKLNERAEKIKQNEEFGKKVSAILQEE-AQEKQDLDSQL 342
Query: 361 --------YDGFFAD 367
Y G F D
Sbjct: 343 DVQAEESIYSGGFPD 357
>gi|56708263|ref|YP_170159.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670734|ref|YP_667291.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC198]
gi|224457383|ref|ZP_03665856.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370748|ref|ZP_04986753.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC033]
gi|254875083|ref|ZP_05247793.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|56604755|emb|CAG45833.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110321067|emb|CAL09216.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC198]
gi|151568991|gb|EDN34645.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC033]
gi|254841082|gb|EET19518.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282159490|gb|ADA78881.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
NE061598]
Length = 482
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 124/278 (44%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R+D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRIDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y F + + WP D K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L + PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLIAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGIF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|299132766|ref|ZP_07025961.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
gi|298592903|gb|EFI53103.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
Length = 473
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 161/365 (44%), Gaps = 22/365 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV +D ET G D+ FA +R D +I E + LP P A+ G+
Sbjct: 6 FVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIGRFEAR-SRLLPHVLPHPAALRTNGL- 63
Query: 65 PQKALRDGVVEAEFS--RRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P L DG + + + R I Q S + +GYN++RFD+ R+ ++ + +Y S
Sbjct: 64 PIGRLLDGSLPSHYDMVRSIRQRLLSWSPSIFLGYNSVRFDEEMLRHALFQTLHPAYLTS 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N NSR D+ ++ A A SP + P +G + F+L+ LALANG+ AHDA +D
Sbjct: 124 NHN-NSRADVWGLVMAAAAVSPACLNVPIGPEGRSIFRLEQLALANGVAQEQAHDALSDA 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
ATL L L+ ++ P+L++ + K + ++ ++ L F A+++ A +
Sbjct: 183 IATLELCRLVHQRSPELWQRFVRFSKKATVADFVEAEDGFMLTE----FFANQAYHAPVV 238
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+ P + NL+ D F + +L L P P++ + +N P
Sbjct: 239 CIGRDPDQSNGRFCLNLNRDADRFAAMTDDELRAELAQK--------PCPVRRLRINAAP 290
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359
L + + G+D ++ L +R + Y + S S+ + +
Sbjct: 291 TLTAFYDAPEVMLD--GLDIDAVEARARRVKSDPALCNRLVSAYTSTREPRSPSRHAEER 348
Query: 360 LYDGF 364
LYDGF
Sbjct: 349 LYDGF 353
>gi|330888492|gb|EGH21153.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020]
Length = 124
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 55/122 (45%), Positives = 68/122 (55%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SW 122
W
Sbjct: 121 EW 122
>gi|254369135|ref|ZP_04985147.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
FSC022]
gi|157122085|gb|EDO66225.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
FSC022]
Length = 482
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y F + + WP + K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGIF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|89256131|ref|YP_513493.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
LVS]
gi|115314604|ref|YP_763327.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
OSU18]
gi|156502153|ref|YP_001428218.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
gi|167009834|ref|ZP_02274765.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
FSC200]
gi|254367455|ref|ZP_04983481.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
257]
gi|290953267|ref|ZP_06557888.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
URFT1]
gi|295313509|ref|ZP_06804104.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
URFT1]
gi|89143962|emb|CAJ79183.1| Exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
LVS]
gi|115129503|gb|ABI82690.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
OSU18]
gi|134253271|gb|EBA52365.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
257]
gi|156252756|gb|ABU61262.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
Length = 482
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERFN-FFVKLNPDTTPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+A G+ E + R+IH+ + P T IGYN + FDD R FY+N Y + N
Sbjct: 66 IAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y F + + WP + K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGIF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|187931547|ref|YP_001891531.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712456|gb|ACD30753.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 482
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 18/278 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YD ET G + + D+ QFA +R + +IE FF K D +P P A I+
Sbjct: 7 LLFYDLETSGINNSFDQVLQFAAIRTYLDFNEIERFN-FFVKLNPDTMPSPMATITHHIS 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
++ G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y + N
Sbjct: 66 IAQS-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFKN 124
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-----AHDAKA 179
G SR DL ++ Y + + WP D K + AHDA
Sbjct: 125 GCSRADLFPIVTCYYLLCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDAIT 184
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-----IDIQNMTPLVHVSGMF 230
DV T+ L +R PK++++L NK N L +L + + + VSG+F
Sbjct: 185 DVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGIF 244
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDL 268
G+ + + I + H YK+ I L D +F D
Sbjct: 245 GSKNNFISAILDLGQHRHYKNQEIFLRL--DSCLFSDF 280
>gi|115524481|ref|YP_781392.1| exodeoxyribonuclease I [Rhodopseudomonas palustris BisA53]
gi|115518428|gb|ABJ06412.1| Exodeoxyribonuclease I subunit C [Rhodopseudomonas palustris
BisA53]
Length = 490
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 165/377 (43%), Gaps = 25/377 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV +D ET G D+ FA +R D + + EV + +P P A+ ++
Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVR-SRLLPHVVPHPSALRTNRLS 61
Query: 65 PQKALRDGVVEA--EFSRRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
++ L DG + + E R I + + + +GYN+IRFD+ R+ ++ + +Y S
Sbjct: 62 IER-LIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTS 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+NGN R D L ++ A SP + P +G F+L LA N ++H AHDA ADV
Sbjct: 121 -NNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADV 179
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240
ATL L L+RE+ P+L++ + K + ++ ++ G F SN A
Sbjct: 180 AATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESED--------GFFLTEFFSNQAYH 231
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
APV D +G + + D+ +LA + P P++ + +N
Sbjct: 232 APVVCLGPDPDQP-----NGRLCLRLDVPPEELALMPDEALQAYLSAKPSPVRRLRINAS 286
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS--SSQDVDS 358
P L + G D + L++ R R ++Y S S V+
Sbjct: 287 PTLTA--FHDAPDLMLNGADLDELEDRARRLKEDAAFRSRIISLYVAVRESFAPSLHVEG 344
Query: 359 QLYDGFFA-DVDRQIMD 374
Q+YDG D +R+I D
Sbjct: 345 QIYDGLLGPDDERRIAD 361
>gi|226490309|emb|CAQ42997.1| exonuclease [Escherichia coli K-12]
Length = 89
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 57/79 (72%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69
Query: 65 PQKALRDGVVEAEFSRRIH 83
PQ+A G EA F+ RIH
Sbjct: 70 PQEARAKGENEAAFAARIH 88
>gi|325276506|ref|ZP_08142262.1| exonuclease I [Pseudomonas sp. TJI-51]
gi|324098353|gb|EGB96443.1| exonuclease I [Pseudomonas sp. TJI-51]
Length = 105
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/103 (46%), Positives = 61/103 (59%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+PADD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103
TGITPQ G+ EAEF R+H + P TC GYN +RFDD
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDD 103
>gi|162148670|ref|YP_001603131.1| exodeoxyribonuclease I [Gluconacetobacter diazotrophicus PAl 5]
gi|161787247|emb|CAP56840.1| putative exodeoxyribonuclease I [Gluconacetobacter diazotrophicus
PAl 5]
Length = 437
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 29/354 (8%)
Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFS-----RRIHQFFSVPNTCIIGYNNIRFDDYYS 106
LP P A+ G++ + +L D + + ++ RRI S +G+N+IRFD+
Sbjct: 18 LPHPSALRTNGLSIE-SLTDTNLPSHYAMVGDIRRI--LMSWSPAVFVGFNSIRFDEEML 74
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R+ ++ Y +Y S ++ N R D L ++ A A SP + P ++G +F+LQ LA A
Sbjct: 75 RHALFQCLYPAYLTS-NHRNCRADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAA 133
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
NG+ H AHDA +DV AT+ L L+ ++ P L++ + NK + +D ++ L
Sbjct: 134 NGLVHARAHDAMSDVLATIELCRLVHQRSPDLWQRFVRFSNKATVSDFVDAEDGFVLTE- 192
Query: 227 SGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG 286
F ++ A + + P + + +L D+ + V+L L
Sbjct: 193 ---FYGGQAYHAPVVCIGVDPDQANGRLCLSLYHDVGQLARMSDVELQAHLAQK------ 243
Query: 287 LVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY- 345
P PI+ +N P L + + I H + ++ +L R A Y
Sbjct: 244 --PSPIRRFRINAAPTLTAFFDAPEHMLDGGSIGHIE--DQARRVKADADLCTRLVAAYI 299
Query: 346 --NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTA-PEQLSTLNLPFSDRRL 396
+PY S ++ ++Y+GF D M+ + + P++LS + D RL
Sbjct: 300 AAREPYPLSPH-LEERIYNGFPGPDDEGRMNAFHQVSWPDRLSIVQ-SLEDERL 351
>gi|153872365|ref|ZP_02001281.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
gi|152071166|gb|EDN68716.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
Length = 312
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 110/214 (51%), Gaps = 5/214 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M N ++ YD ET G + + QFA +R D Q+ +IE ++ K D +P P+A
Sbjct: 1 MNNTYLFYDIETTGLNKTFAQILQFAAIRTDMQFNEIERHDILI-KLRPDVIPSPKATIT 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
I+ ++++ G+ E E +IH+ + T +GYN FDD + R F+RN Y
Sbjct: 60 HRISIAQSMQ-GLCEFEAIMQIHRLMNQSGTISLGYNTSSFDDEFLRFCFHRNLLPPYTH 118
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQ-WPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +G R DLL + Y + + ++ WP DG + +L+ L+ N + AH+A
Sbjct: 119 QYKDGCRRSDLLPITIMYYLYKKEVLENWP-EIDGKPTMRLEKLSEVNQLAIGQAHNAIV 177
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
DV AT+ L + K+PK++ YL Y +K +K
Sbjct: 178 DVEATVELARRLF-KEPKMWGYLDGYFDKTTDKK 210
>gi|119713146|gb|ABL97215.1| exodeoxyribonuclease I [uncultured marine bacterium EB0_49D07]
Length = 469
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 17/225 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--- 57
++++ + YD ET G + Q ++ +R E I + C P +P P A
Sbjct: 3 VSSNLIFYDTETTGLLKDFSQILQCGSIQTNRSLE-ILHEQNLGCAPLPWAIPYPMAMVT 61
Query: 58 -----VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+F + ++ + +RD +R+ Q+ I +N + +D+ R FY
Sbjct: 62 NKKTNLFHSNVSHYELMRD------LNRQWRQWTIDEPAVFITFNGMAYDEELVRRQFYW 115
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEH 171
N ++SY + NGN R D+L +M + AFSPD + P D G S K D+A ANGIE
Sbjct: 116 NLFESY-LTNTNGNGRLDILLMMNNVAAFSPDVLNIPLFDGGPGISLKQADIAEANGIEI 174
Query: 172 VNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
+AHDA AD + L+ I KKP+L ++ K ++ ++
Sbjct: 175 GDAHDAIADCKLMIGLLEKINAKKPELIDFFLSISTKPGIQAAVE 219
>gi|213584484|ref|ZP_03366310.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 57
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 45/57 (78%)
Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW + NSR
Sbjct: 1 GENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 57
>gi|254455766|ref|ZP_05069195.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
gi|207082768|gb|EDZ60194.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
Length = 481
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 168/389 (43%), Gaps = 44/389 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET + G+ +D ++++E C+ D +P A+ I
Sbjct: 3 YVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSAR-CRMPQDRVPSATALCINKSN 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + E ++ F P T +GY++I FDD R F+++ Y +
Sbjct: 62 VDLLTKGNLSHYEMLSQVENKFKEWSPAT-FLGYSSINFDDEVIRKEFFKSLRKPYLTNT 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ GN R D L++++A +A D ++ G S KL+ LA NG E AH A D
Sbjct: 121 E-GNVRHDALNIVKAAFAIDDDILKTELNAKGNKSMKLESLARLNGFESAGAHSALFDTE 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
T+ ++ LI++K+P ++ +K + LI +N+ L + +S L AP
Sbjct: 180 LTVKVLDLIKKKQPDIWTEYLKTSSKVVVENLIKQENIITL----NEYFYGKSYLYLCAP 235
Query: 243 V----AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
+ HP YK + +L D+ Q L+ L K + S P ++ V N
Sbjct: 236 LHPNFCSHPVYKWGQV-VDLKADIEAIQKLNYEDLKKEMKKS--------PKFLRTVKSN 286
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL---RDRF---------KAIYN 346
K PI++ + K +D + L++ +L+ ++ L ++F +A
Sbjct: 287 KAPIILDKSFALK-------VDPYKKLDS-SLINKRAELVKTNEKFSKDISNILREAAEE 338
Query: 347 KPYTSSSQDVDSQ--LYDGFFADVDRQIM 373
K TSS +D++ + +Y G F Q +
Sbjct: 339 KIETSSQEDIEPEESIYSGGFTSAKDQAL 367
>gi|330898430|gb|EGH29849.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT]
Length = 173
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (67%)
Query: 339 DRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398
D+ A+Y K +S+D + QLYDGF D DR++ +++ + PEQL+ PF D RLPE
Sbjct: 35 DKLAAVYGKDDFVASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPE 94
Query: 399 LFFRYRARNFPHTLSEKEKQDW 420
L FRYRARNFP TLS +E+ W
Sbjct: 95 LLFRYRARNFPDTLSGEEQIRW 116
>gi|297171091|gb|ADI22103.1| exonuclease I [uncultured Planctomycetales bacterium HF0200_11L05]
Length = 468
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 100/405 (24%), Positives = 165/405 (40%), Gaps = 24/405 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
++ D ET G D+ + Q + D +E F K +P PEA + T
Sbjct: 10 YIFTDTETTGLDINFSQILQVGSLLTDENL-VVEKEHSLFSKLLPWIVPSPEAFLVHKKT 68
Query: 65 PQKALRDGVVEAEFSRRIHQ---FFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ D E ++ + +S+ N I YN RFD+ R FY Y
Sbjct: 69 -ECLNEDSPTHYEMMCQLREDWLNWSINKNPVFITYNGHRFDEELFRRQFYWCLLPPYIT 127
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ G +R DL+ + + F P+ + P ++ S KL D A AN I +NAHDA AD
Sbjct: 128 N-TGGATRLDLMYTFQLVANFFPNSLTVPMNEENGISLKLTDWAEANKISSINAHDAVAD 186
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
Y + L LI EK P+++ +K+ +LI + P + + SR T +
Sbjct: 187 CYLMVNLSRLIAEKVPEVWNSSLRGSSKDGNLRLIQSE---PFAMIGEVIRKSRF-TYPV 242
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
+ + ++ V +L D +L +L +++ + I++V +NK
Sbjct: 243 TFCGQNNKMQNEVAVADLYFDPDTLDELSDSELLEQISNAG--------TAIRKVRINKS 294
Query: 301 -PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVD 357
PI+ +D + I ++ E +R T L+ R + N+ + V+
Sbjct: 295 LPIMNALDI--PSIHDTLDIPFEQLEERANKIRNNTKLQSRISELLTNNQIQYPPPKYVE 352
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR 402
+Y GF + D M+R T + S L F D R EL R
Sbjct: 353 QSVYSGFPSKEDELWMERFHATPWQDRSKLIDGFEDSRYRELAER 397
>gi|254506300|ref|ZP_05118443.1| exonuclease I [Vibrio parahaemolyticus 16]
gi|219550780|gb|EED27762.1| exonuclease I [Vibrio parahaemolyticus 16]
Length = 96
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432
MD I +T P L+ L++ F+D R+ L FRYRARNFP TL E E+Q W H + SR
Sbjct: 1 MDIIRQTDPNNLAALDISFNDDRIAPLLFRYRARNFPATLDESEQQRWANHCRDYF-ESR 59
Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
IE+Y L++L E++ DE K ++ ++Y+Y+Q ++
Sbjct: 60 IEDYMLNLENLVHEHESDEKKLAILKSVYQYVQKLV 95
>gi|254419026|ref|ZP_05032750.1| exonuclease family [Brevundimonas sp. BAL3]
gi|196185203|gb|EDX80179.1| exonuclease family [Brevundimonas sp. BAL3]
Length = 476
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 167/379 (44%), Gaps = 33/379 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G D+ QFA + D +++ E+ C+ +P P+A+ ++
Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFEL-RCRLQPHVVPHPKAMLANRLS 61
Query: 65 PQKALRDGVVEAEFS--RRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
++ L D + + + R I + S I IGYN+IRFD+ R+ F++N + +Y S
Sbjct: 62 IER-LTDLSLPSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYLTS 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
G R D + ++ A + + P DG +F+L+ +A ANG+ AHDA AD
Sbjct: 121 -TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNVDAAHDAMADA 179
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
TLAL + + P+++ NK + L+ + + L G F AS A +
Sbjct: 180 QMTLALCRRVASEAPEIWSRAIRTSNKAAVADLVASEPLFILTEFYG-FEASHRVVACLG 238
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV---PIKEVHLN 298
P A +P + + +L+ D ++VQL D+L L+ P++ + N
Sbjct: 239 PEAGNPNGR---LCWDLASD-----PAEAVQL------QTDDLAALISQREGPLRRLKTN 284
Query: 299 KCP-ILMPIDYCKKEHFERWGI-DHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS--SQ 354
P I M D E W + D L+ L R + +S S
Sbjct: 285 AAPAIAMSWDAP-----EDWALGDVDEAERRAEWLQANPELSSRIIEAQAARWANSPLSP 339
Query: 355 DVDSQLYDGFFADVDRQIM 373
V+ QLYD F D D ++M
Sbjct: 340 HVELQLYDRFPDDDDLRLM 358
>gi|240142208|ref|YP_002966718.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
gi|240012152|gb|ACS43377.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
Length = 491
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 95/224 (42%), Gaps = 24/224 (10%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP----DP 55
V +D ET DV + FA V V+ + + +C PA L DP
Sbjct: 10 VCWDTETSDTDVRHGQIFDFAAVTSNLTDLVETGTRTVRIRRLSYCIPAYGALSTNRLDP 69
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYR 112
A+ T D E + IH S ++GYN + FD+ R F+R
Sbjct: 70 YALEAT---------DRTDEFSAAASIHGILSPKPGRPLVVLGYNILSFDEEIVRTTFFR 120
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
N D Y S G R+DLL R +A PD DDG SF+L+ +A ANGI +
Sbjct: 121 NLLDPYATS-AKGVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSFRLERIAPANGI-GL 178
Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
AHDA D ATLAL +R P +E ++ + ++ D
Sbjct: 179 RAHDALEDARATLALARRLRSSVPAAWETCLRASDRYEAERVFD 222
>gi|124008030|ref|ZP_01692729.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134]
gi|123986444|gb|EAY26250.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134]
Length = 487
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 5/207 (2%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ V YD + G + D+ + D + +E+ + K D +P PEA+
Sbjct: 22 NLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLLETHHIE-IKKRPDVVPSPEALIANNW 80
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P L G E E R IH+ F+ P++ +GY N+ DD R FYRN Y W
Sbjct: 81 LPSD-LAKGSTEYEAMRHIHELFNTPHSYNVGYGNLNNDDLLVRFGFYRNGLTPYTHQWQ 139
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
R DL ++ Y +P+ + + G S +L D+A ANG+ +
Sbjct: 140 RSCRRVDLRTIVTLYYLQAPNALVFSKNAAGKVSLELDDIAQANGL---TVGKGATNAQT 196
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQ 210
+ L L+ P L+E + +K +
Sbjct: 197 IMELAKLLHNANPMLWEQALGFFDKKE 223
>gi|167949795|ref|ZP_02536869.1| Exodeoxyribonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 142
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Query: 355 DVDSQLYDG-FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
D D LY G FF++ DR+ M +I T +QL+ L+ F D RLPE+ FRYRARN+P TL+
Sbjct: 19 DPDLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDARLPEMLFRYRARNWPETLN 78
Query: 414 EKEKQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E E+Q W E+R+ L + +++EY +L L+ + + L+ L E+ + V
Sbjct: 79 ETERQRWDEYRQTRLFDADGGGAIQLDEYLAQLDLLAADEGLSAERRALLPKLLEWAERV 138
>gi|330959582|gb|EGH59842.1| putative exodeoxyribonuclease [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 465
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 148/380 (38%), Gaps = 38/380 (10%)
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
L G E E ++ +H F+ PN IG N D + R+ FYRN + GNS
Sbjct: 66 LLSGHSELECAKTVHDHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLL-PFPCVGLPGNSH 124
Query: 129 W-DLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ DL ++RAI+ PD W P+ F + ++ G V + D +
Sbjct: 125 YLDLETMLRAIHILRPDEYPWADSPAPANTHSFHHFLMWGAKVSGGNRAVRLRELLEDTH 184
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI--------DIQNMTP--LVHVSGMFGA 232
A+ PKL + + + ++ + D+++ TP LVH S
Sbjct: 185 ASC----------PKLVGHAIKHSSIESIKSALGLDKGEVSDLESTTPVYLVHQS---LP 231
Query: 233 SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQD--LDSVQLAKRLFTSHDELKGLVPV 290
S L PV Y D + +L D+ + + + Q R TS+
Sbjct: 232 SPKGFLLGLPVGVDITYPDILYVADLESDLSQLCNPSVPTYQGFVRNPTSNPN------G 285
Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
P+ V L++ P P+ + R ID + +R T L R K +
Sbjct: 286 PLVRVSLSRFPFCAPLSAIRPADASRLSIDIGLVKRRIAQIRSATFLPSRLKEVPVLQLA 345
Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
S DV +++ G F+ D+ +M + +T + L++ SD R EL R P
Sbjct: 346 SQPSDVFHRMWAGDFSLKDQALMRELHQTPMGKWLNLSVGASDGRFHELVVRLLGGIAPE 405
Query: 411 TLSEKEKQDWLEHRKKMLTR 430
LS ++ E+ + L++
Sbjct: 406 ILSSGQRSQVDEYAQSRLSK 425
>gi|91762381|ref|ZP_01264346.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
gi|91718183|gb|EAS84833.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
Length = 475
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 110/247 (44%), Gaps = 9/247 (3%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ I+D E+ + + + G+ VD +++++ F C+ + +P A+ +
Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFN-FRCRLPEGEVPQAMALIVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + + + ++ F + I +G++NI FDD RN F+R Y +
Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAIFMGWSNIGFDDEMIRNEFFRGIRYPYITN- 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N R D L++ R +A I+ + G KL+ LA NG E AH A D
Sbjct: 120 ATPNKRHDGLNIARGAHAVDESVIKTETNAKGNAVMKLESLARMNGFESSGAHSALFDAE 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
T+ ++ LI++ +P+ ++ NK+ + + M L FG ++ ++AP
Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYH--FG--KNYRFVVAP 235
Query: 243 VAWHPRY 249
+ HP++
Sbjct: 236 L--HPKH 240
>gi|146344350|ref|YP_001202206.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25]
gi|146188162|emb|CAM96493.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25]
Length = 465
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 138/369 (37%), Gaps = 38/369 (10%)
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
L G E E +R +H+ F+ PN IG N D + R+ FYRN + GNS
Sbjct: 66 LLSGHSELECARTVHRHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLL-PFPCIGLPGNSY 124
Query: 129 W-DLLDVMRAIYAFSPDGIQWPSRDDGATS-----FKLQDLALANGIEHVNAHDAKADVY 182
+ DL ++RAI PD W D + F + ++ V D AD +
Sbjct: 125 YLDLETMLRAINILRPDEYPWADSPDPTNTQSFHHFLMWGANVSGENRAVRLRDLLADTH 184
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI--------DIQNMTPLVHVSGMFGASR 234
A+ PKL + + + ++ + D+++ TP+ V A +
Sbjct: 185 ASC----------PKLVGHALKHSSLQSIKSALGLEQGEVSDLESATPVYLVHQSLQAPK 234
Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL----KGLVPV 290
L PV Y D + +L D+ QL TS+
Sbjct: 235 -GFILGLPVGVDITYPDILYVADLESDIS--------QLCNPAITSYQSFVRNPSSNPNG 285
Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
P+ + L++ P P+ + R ID + LR T L R K +
Sbjct: 286 PLVRISLSRFPFCAPLSAIRPADAARLSIDIGLVKRRIAQLRSATLLPSRLKETPVLHLS 345
Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
S DV +++ G F+ D+ +M + + + L + SD R+ EL R P
Sbjct: 346 SQPSDVFHRMWAGDFSPKDQVLMQELHQAPMGEWLNLAVGASDGRIYELVVRLLGGIAPE 405
Query: 411 TLSEKEKQD 419
L+ ++ +
Sbjct: 406 ILTSDQRSE 414
>gi|213584766|ref|ZP_03366592.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 43
Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 32/41 (78%)
Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIH 83
F+CKPADDYLP P AV ITGITPQ+A G EA F+RRIH
Sbjct: 1 FYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIH 41
>gi|71083189|ref|YP_265908.1| exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
gi|71062302|gb|AAZ21305.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
Length = 475
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 110/247 (44%), Gaps = 9/247 (3%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ I+D E+ + + + G+ VD +++++ F C+ + +P A+ +
Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRFN-FRCRLPEGEVPQAMALIVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + + + ++ F + + +G++NI FDD RN F+R Y +
Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPYITN- 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N R D L+++R +A ++ G KL+ LA NG E AH A D
Sbjct: 120 ATPNKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNGFESSGAHSALFDAE 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
T+ ++ LI++ +P+ ++ NK+ + + M L FG ++ ++AP
Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYH--FG--KNYRFVVAP 235
Query: 243 VAWHPRY 249
+ HP++
Sbjct: 236 L--HPKH 240
>gi|167949792|ref|ZP_02536866.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 79
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
++R +A P+GI+WPS G SF+L+ L ANGI H AHDA +DVYAT+A
Sbjct: 1 MVRLTHALRPEGIEWPSDAAGRPSFRLELLTAANGIAHQAAHDALSDVYATIA 53
>gi|330949040|gb|EGH49300.1| exonuclease I [Pseudomonas syringae pv. pisi str. 1704B]
Length = 51
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
+ GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L A+GI
Sbjct: 5 EGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAAHGI 50
>gi|169841446|ref|ZP_02874559.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
Length = 106
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR 406
KP + D +S+LYDGF + D+ + + Q+ F D RL +++ RY+AR
Sbjct: 7 KPDFTPQADAESKLYDGFINNQDKLRSEVVRNLDQNQIKQYTPEFEDSRLKQIYPRYKAR 66
Query: 407 NFPHTLSEKEKQDWLEHRKKMLTR 430
N+P+ LS E+ ++ E+RK L R
Sbjct: 67 NYPNALSSDERIEYDEYRKNRLNR 90
>gi|169840886|ref|ZP_02873999.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
Length = 60
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 24 QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
QFAG+R D + I DD LP P A+ +TGITPQK + DG E++F++
Sbjct: 2 QFAGIRTDADFNIIGEPYNLLVALNDDTLPSPSALMVTGITPQKTVSDGYTESQFAK 58
>gi|169841869|ref|ZP_02874978.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
Length = 53
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 96 YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133
YNNIRFDD + R + +RNFYD Y WS+ + SRWD+LD
Sbjct: 1 YNNIRFDDEFIRALLWRNFYDPYEWSYKDNRSRWDMLD 38
>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A2 str. Kyoto]
gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 855
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ V++D E+ G ++ D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEF--IKDTVIVGH-NVTFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + N + +D LD+ R Y PS T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKANFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ +++EK KP + + Y
Sbjct: 644 DDILATKDVLMAMLKEKVKPTIINRMVVY 672
>gi|167949793|ref|ZP_02536867.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 76
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMF 230
L LI++++P+L+ YL +RNK+QLR L++++ P L+HVS M+
Sbjct: 12 LARLIKQRQPRLYGYLLSHRNKHQLRDLLNLKATPPILLHVSSMY 56
>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
Length = 945
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F + D ET G D++ D R QF+ V KI T V P + +P+ V +TGI
Sbjct: 7 FAVVDIETTGTDISADNRTIQFSCCLVSN--NKIIKTFVTDINPQRE-VPN-RIVQLTGI 62
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T ++ + F + Q +S+ N + +N+ FD + + F R Y +
Sbjct: 63 TNERLQK----AKTFDQVAAQLYSLLNNTVFVAHNVNFDFPFLNSEFQRVGYPELQ---- 114
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ AI + I P+ +S++LQDL+ IEH + H A +D A
Sbjct: 115 -----------IEAIDTVTLSQILLPT----LSSYRLQDLSSYFNIEHDHPHTADSDALA 159
Query: 184 TLALVW-LIREKK--PKL 198
T L+ L+R+ K PK+
Sbjct: 160 TAKLLLILLRQIKMLPKM 177
>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
Length = 936
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 78/195 (40%), Gaps = 29/195 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
F + D ET G DR QF + + +I T F P D P+AV +TGI
Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNR--QIIKTYSFLINPKADI---PQAVQNLTGI 64
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P + V + F+ +I +T + +N I FD + N + R
Sbjct: 65 KPADVVNQPVFK-NFATQIEDILQ--DTVFVAHN-INFDLPFLNAELAANGFPKLR---- 116
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
RAI I +P+ S++L DL + ++H N H A +D YA
Sbjct: 117 -----------NRAIDTVELSKIAFPT----LPSYRLSDLTHSLNLKHTNPHQADSDAYA 161
Query: 184 TLALVWLIREKKPKL 198
T +L+ I +K L
Sbjct: 162 TASLLLKILDKLESL 176
>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
labreanum Z]
Length = 228
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 23/199 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I D ET G + +DR + A ++ D+ K E + P D P+ +TGIT
Sbjct: 1 MLIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDE-YISLPNDICYPE-NVQEMTGIT 58
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P+ G E E + P ++ +N +FD + + + R +R+ + N
Sbjct: 59 PEILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSR-----HRYVFPN 113
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADVYA 183
G W ++D + RD +L D G++ V N+H A DV A
Sbjct: 114 G---WGVIDTLTVF------------RDRKPQPHRLSDAISYYGLDGVKNSHRAIDDVVA 158
Query: 184 TLALVWLIREKKPKLFEYL 202
A+ + +++ L EY+
Sbjct: 159 LCAVFDAMCQEQNDLDEYI 177
>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum B1 str. Okra]
gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum B1 str. Okra]
Length = 855
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ V++D E+ G ++ D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEF--IKDTVIVGH-NVTFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + + + +D LD+ R Y PS T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKASFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ +++EK KP + + Y
Sbjct: 644 DDILATKDVLMAMLKEKVKPTIINRMVVY 672
>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum F str. Langeland]
gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum F str. Langeland]
Length = 855
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ V++D E+ G ++ D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEF--IKDTVIVGH-NVTFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + + + +D LD+ R Y PS T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKASFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ +++EK KP + + Y
Sbjct: 644 DDILATKDVLMAMLKEKVKPTIINRMVVY 672
>gi|167949794|ref|ZP_02536868.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 60
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 267 DLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307
+LD Q+ +RLFT +L +G+ +P+K VHLNKCP+L+P +
Sbjct: 5 ELDDEQIHQRLFTPTADLPEGVERIPLKTVHLNKCPVLVPTN 46
>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
15579]
gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
15579]
Length = 855
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 30/194 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ V++D E+ G + D Q AG++++ + E IE E F Y+ D + + G
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERFLTPKK--YVGD--SYLVHGF 549
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ Q G + + +F V +T +IG+ NI FD I N + R +
Sbjct: 550 SDQFLKEKGEDKERVLKDFLEF--VKDTVVIGH-NITFD------ITILN-SELQRLGLE 599
Query: 124 NGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N + +D LD+ R Y PS T+ KL+ L+ E ++HDA D+
Sbjct: 600 KANFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAMDDI 646
Query: 182 YATL-ALVWLIREK 194
AT L+ +++EK
Sbjct: 647 LATKDVLMVMLKEK 660
>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 855
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ V++D E+ G + D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLIPKKSVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEF--IKDTVIVGH-NVTFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + + + +D LD+ R Y PS T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKASFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ +++EK KP + + Y
Sbjct: 644 DDILATKDVLMAMLKEKVKPTIINRMVVY 672
>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum Ba4 str. 657]
gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum Ba4 str. 657]
Length = 855
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ V++D E+ G + D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFLNPKKSVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLKF--IKDTVIVGH-NVTFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + + + +D LD+ R Y PS T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKASFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ ++REK KP + + Y
Sbjct: 644 DDILATKDILMVMLREKVKPTIINRMVVY 672
>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
Length = 855
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ V++D E+ G + D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFLNPKKSVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLKF--IKDTVIVGH-NVTFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + + + +D LD+ R Y PS T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKASFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ ++REK KP + + Y
Sbjct: 644 DDILATKDILMVMLREKVKPTIINRMVVY 672
>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens B str. ATCC 3626]
gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens B str. ATCC 3626]
Length = 870
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A ++++++ E ++ E F P ++ ++ G
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKK----PVKDSYYVHGF 558
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G + + + +F II +N+++D + RN ++
Sbjct: 559 SDEMLQRIG---EDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK-- 613
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 614 ---TFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 657
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 658 TGELLVRAINEK 669
>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum NCTC 2916]
gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum NCTC 2916]
Length = 855
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ V++D E+ G + D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKSVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEF--IKDTVIVGH-NVAFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + + + +D LD+ R Y PS T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKASFKTYYDTLDIARRFY---------PS----LTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ +++EK KP + + Y
Sbjct: 644 DDILATKDVLMAMLKEKVKPTIINRMVVY 672
>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens D str. JGS1721]
gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens D str. JGS1721]
Length = 876
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A ++++++ E ++ E F P ++ ++ G
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKK----PVKDSYYVHGF 564
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G + + + +F II +N+++D + RN ++
Sbjct: 565 SDEMLQRIG---EDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK-- 619
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 620 ---TFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 663
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 664 TGELLVRAINEK 675
>gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 269-3]
gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 269-3]
gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
Length = 936
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 73/191 (38%), Gaps = 29/191 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
F + D ET G DR QF + + +I T F P D P+AV +TGI
Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNR--QIIKTYSFLINPEADI---PQAVQNLTGI 64
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P + V F + Q + + +NI FD + N +
Sbjct: 65 KPTDVINQPV----FKKYAAQIEDILQDTVFVAHNINFDLPFLNAELAANSFPKLH---- 116
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
RAI I +P+ S++L DL + ++H N H A +D YA
Sbjct: 117 -----------NRAIDTVELSKIAFPT----LPSYRLSDLTHSLNLKHTNPHQADSDAYA 161
Query: 184 TLALVWLIREK 194
T +L+ I +K
Sbjct: 162 TASLLLKIFDK 172
>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens C str. JGS1495]
gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens C str. JGS1495]
Length = 876
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A +++++ E ++ E F P ++ ++ G
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKK----PVKDSYYVHGF 564
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G + + + +F II +N+++D + RN ++
Sbjct: 565 SDEMLQRIG---EDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK-- 619
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 620 ---TFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 663
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 664 TGELLVRAINEK 675
>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
743B]
gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
743B]
gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
743B]
Length = 867
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV--FI 60
++ +++D E+ G DV D Q A +R++R E I+S E F KP + + E + F
Sbjct: 499 DNIIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFERFL-KPKKS-VKNSEHIHGFS 556
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-DYYSRNIFYRNFYDSYR 119
+K V EF R FS N I+G+ N+++D + S I N S
Sbjct: 557 DEFLKEKGEDKETVIKEFLR-----FS-ENAVIVGH-NVQYDINILSSEIHRLNLGKSKF 609
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
++ +D LD+ R Y P+ + KL L+ E++ +HDA
Sbjct: 610 LAF------YDTLDIYRRFY---PNLVNH----------KLNTLSDIFKTENIPSHDAMD 650
Query: 180 DVYATLALVWLIREKK 195
D+ AT L LIR K
Sbjct: 651 DILATKDL--LIRALK 664
>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens ATCC 13124]
gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens ATCC 13124]
Length = 870
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 80/185 (43%), Gaps = 25/185 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A +++++ E ++ E F P ++ ++ G
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKK----PVKDSYYVHGF 558
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G + + + +F II +N+++D + RN ++
Sbjct: 559 SDEMLQRIG---EDKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK-- 613
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 614 ---TFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 657
Query: 184 TLALV 188
T L+
Sbjct: 658 TGELL 662
>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
Length = 872
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
++ +++D E+ G DV D Q A +++++ E I+S E F E+ F +
Sbjct: 495 DNIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKFLKNK-----KSVESSFKVH 549
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
G + + G + + + +F +I +N+++D + YRN D ++
Sbjct: 550 GFSDEFLNEKG---EDKKKVLKEFIDFSKGAVIVGHNVQYDINILNSELYRNNLDGTKFK 606
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ +D LD+ R Y P+ +KL+ L+ ++ +HDA D+
Sbjct: 607 -----AFYDTLDIYRRFYTSLPN-------------YKLETLSKIFETKNKPSHDAMDDI 648
Query: 182 YATLALV 188
AT L+
Sbjct: 649 LATSDLL 655
>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. ATCC 3502]
gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. Hall]
gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. Hall]
Length = 855
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 37/209 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP---ADDYLPDPEAVFI 60
+ V++D E+ G + D Q AG++++ + E IES + F D YL +
Sbjct: 494 NVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKFVGDSYL-------V 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G + Q +G + + +F + +T I+G+ N+ FD + + R
Sbjct: 547 HGFSDQFLKENGENKKVVLKDFLEF--IKDTVIVGH-NVAFDISILNS-------ELERL 596
Query: 121 SWDNGNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + + + +D LD+ R Y T+ KL+ L+ E ++HDA
Sbjct: 597 SLEKASFKTYYDTLDIARRFYP-------------NLTNHKLETLSKLFNTETKSSHDAM 643
Query: 179 ADVYATL-ALVWLIREK-KPKLFEYLYDY 205
D+ AT L+ +++EK KP + + Y
Sbjct: 644 DDILATKDVLMAMLKEKVKPTIINRMVVY 672
>gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
16823]
Length = 284
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVF 59
+T +FV+ D ET G DVA DR + A ++ E+ E +CK + +P E+
Sbjct: 5 LTRNFVMLDLETTGLDVAKDRIIEIALIKTTPTGEQSE-----YCKRVNPTIPISKESAE 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
ITGIT + + E + + I F + + + GYN+ +FD
Sbjct: 60 ITGITDEMVATEPTFE-QLADEIAAF--IGDADLGGYNSNKFD 99
>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
13]
Length = 870
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A ++++++ E ++ E F P ++ ++ G
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKK----PVKDSYYVHGF 558
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G + + + +F II +N+++D NI S
Sbjct: 559 SDEMLQRIG---EDKEKVLKEFVEYSKDSIIVGHNVQYD----INILCSELERS-NLGKP 610
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 611 KFKTFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 657
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 658 TGELLVRAINEK 669
>gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
curdlanolyticus YK9]
gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
curdlanolyticus YK9]
Length = 957
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 31/185 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAVFITG 62
F + D ET G A D Q V +D E++ T+ F F +PA D +P P +TG
Sbjct: 3 FAVLDLETTGHQ-AEDEMIQIGIVMLD---EELNVTDTFSSFVRPATD-IP-PFITQLTG 56
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + VE + + + ++ +N+ FD ++ R Y +
Sbjct: 57 ITNEMVADAPSVEDVLTDVV----KLLGDAVLVAHNVGFDAHFMNRALDRCGYSPFT--- 109
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
R D +D++R +Y P S++L ++ A GI H H A +D
Sbjct: 110 ---GRRLDTIDLLRMLYPTLP-------------SYQLGAVSEAFGITHERKHQADSDAE 153
Query: 183 ATLAL 187
AT L
Sbjct: 154 ATAML 158
>gi|167949791|ref|ZP_02536865.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 44
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGV 73
V + +P+DD LP PEA +TGI+PQ A GV
Sbjct: 2 VIYSRPSDDMLPQPEACMVTGISPQLAYAKGV 33
>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
Length = 870
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A +++++ E ++ E F ++ ++ G
Sbjct: 503 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKK----SVKDSYYVHGF 558
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G E + + +F II +N+++D + RN ++
Sbjct: 559 SDEMLQRIG---EEKEKVLKEFVEYSKDSIIVGHNVQYDINILCSELERNNLGKPKFK-- 613
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 614 ---TFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 657
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 658 TGELLVRAINEK 669
>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
(dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
acidaminovorans]
gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
(dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
acidaminovorans]
Length = 960
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 85/207 (41%), Gaps = 50/207 (24%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
FV D ET G + D Q AG+R + E++ + V KP P+ + +T I
Sbjct: 24 FVAIDIETTGLNSEWDEIIQIAGMRF--KGEEVVNQFVSLVKPKGKV---PKFIEHLTHI 78
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+PQ+ L+ E + F + ++ ++G+N I FD NF + ++ D
Sbjct: 79 SPQE-LKTAPPIKEVLKDFCNF--IGDSILVGHN-IGFD---------FNFLN--QFIVD 123
Query: 124 NG-----NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
NG N WD ++ R F+ D KL L GIE +NAH A
Sbjct: 124 NGGFPISNMHWDTAEIGRIYLPFTTD-------------HKLSTLVSFFGIELMNAHQAD 170
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDY 205
AD AT KLF L +Y
Sbjct: 171 ADALAT-----------GKLFNALTNY 186
>gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
A2-165]
gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
A2-165]
Length = 244
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
V +D ET G + + + A +RV++ +S +VF P + +P + V +T
Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
GIT ++ +G+ EAE + R + S ++ + N +FD ++ + R+
Sbjct: 74 GITDEQLENEGITEAEAAARFTELISGGRVLLVAH-NAQFDLLFTAEMLRRH 124
>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
Length = 945
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
+ + D ET G D+++D R QF+ V KI T V P + PE + +TG
Sbjct: 7 YAVVDIETTGTDMSVDNRIIQFSCTLVAHG--KIVETYVSDINPQREV---PERIIQLTG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITP++ L+ + S ++++ S T + +N + FD + F R Y
Sbjct: 62 ITPER-LKKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYPE----- 112
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
LD+ AI + I P+ +S++LQDL+ I H + H A +D
Sbjct: 113 ---------LDI-EAIDTVTLSQILLPT----LSSYRLQDLSTYFNIIHNHPHTADSDAL 158
Query: 183 ATLALVW-LIREKK 195
AT L+ L+R+ K
Sbjct: 159 ATAKLLLILLRQVK 172
>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
Length = 945
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
+ + D ET G D+++D R QF+ V KI T V P + PE + +TG
Sbjct: 7 YAVVDIETTGTDMSVDNRIIQFSCTLVAHG--KIVETYVSDINPQREV---PERIIQLTG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITP++ L+ + S ++++ S T + +N + FD + F R Y
Sbjct: 62 ITPER-LKKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYPE----- 112
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
LD+ AI + I P+ +S++LQDL+ I H + H A +D
Sbjct: 113 ---------LDI-EAIDTVTLSQILLPT----LSSYRLQDLSTYFNIIHNHPHTADSDAL 158
Query: 183 ATLALVW-LIREKK 195
AT L+ L+R+ K
Sbjct: 159 ATAKLLLILLRQVK 172
>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 945
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
+ + D ET G D+++D R QF+ V KI T V P + PE + +TG
Sbjct: 7 YAVVDIETTGTDMSVDNRIIQFSCTLVAHG--KIVETYVSDINPQREV---PERIIQLTG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITP++ L+ + S ++++ S T + +N + FD + F R Y
Sbjct: 62 ITPER-LKKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYPE----- 112
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
LD+ AI + I P+ +S++LQDL+ I H + H A +D
Sbjct: 113 ---------LDI-EAIDTVTLSQILLPT----LSSYRLQDLSAYFNIIHNHPHTADSDAL 158
Query: 183 ATLALVW-LIREKK 195
AT L+ L+R+ K
Sbjct: 159 ATAKLLLILLRQVK 172
>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens NCTC 8239]
gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens NCTC 8239]
Length = 870
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A ++++++ E ++ E F P ++ ++ G
Sbjct: 503 NIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLKNKK----PVKDSYYVHGF 558
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + + G + + + +F II +N+++D NI S
Sbjct: 559 SDEMLQKIG---EDKEKVLKEFVEYSKGSIIVGHNVQYD----INILCSELERS-NLGKP 610
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 611 KFKTFYDTLDIYRRFYP-------------GNINYKLENLSNVYDTKHKPSHDAMDDIIA 657
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 658 TGELLVRAINEK 669
>gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
bacterium D16]
gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
bacterium D16]
Length = 236
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 6/110 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK----IESTEVFFCKPADDYLPDPEAVFI 60
V++D ET G D D+ + A +RV+R + F P + LP+ V +
Sbjct: 14 LVVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTFIKLPEGETLPE-NIVSL 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
TGIT ++ +GV A+ + +I + T +I + N +FD + R +
Sbjct: 73 TGITDERLQTEGVQPAKAASQIAKLMQNGPTLMIAH-NAQFDACFLRGLL 121
>gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
Length = 234
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A V + D W + +ST F P L PEA+ G
Sbjct: 20 VVIDVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP---------NTCIIGYNNIRFDDYY-----SRN 108
I P LR V E E +H+ F + N II +N FD + SR
Sbjct: 80 IDPHNPLRGAVGEYE---ALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRA 136
Query: 109 IFYRNFYDSY 118
RN + +
Sbjct: 137 GLKRNPFHPF 146
>gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
Length = 244
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 23/202 (11%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
V +D ET G + + + A +RV++ +S +VF P + +P + V +T
Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT ++ +G+ EAE + R + ++ + N +FD ++ + R+
Sbjct: 74 GITDEQLENEGITEAEAAARFTELIGGGRVLLVAH-NAQFDLLFTAEMLRRH-------- 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKAD 180
+ G D + ++ + D +P + A ++KL+D + N+H A D
Sbjct: 125 GNGGPEALKAADYLDSLTVYK-DRRAYPHKLANAILTYKLED-------KVQNSHRAIDD 176
Query: 181 VYATLALVWLIREKKPKLFEYL 202
V A + + ++ L Y+
Sbjct: 177 VAALFEVCKAMDAERSDLLSYV 198
>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
LAA1]
gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
LAA1]
Length = 1440
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 31/222 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G + D + A V+V + +I T P + DP+ V +TG
Sbjct: 425 TEYVVFDTETTGLNAREDTLIEIAAVKV--KAGQIVDTYATLIDP--ERALDPKIVELTG 480
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + + + F ++ +N FD + R D W
Sbjct: 481 ITNEMV----AGQPKLKEALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDP----W 532
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ D L + R +Y G ++KL+ L ++ VN H A AD
Sbjct: 533 EE--PVIDTLALARVLYP-------------GEKNYKLKTLTQKFSVDLVNHHRALADSE 577
Query: 183 ATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
AT + V ++++ K + L D N LR IDI + P
Sbjct: 578 ATAKVFVHMLKDAKARGIHNLLDM---NHLRGQIDISRVRPF 616
>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 1440
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 31/222 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G + D + A V+V + +I T P DP+ V +TG
Sbjct: 425 TEYVVFDTETTGLNAREDTLIEIAAVKV--KAGQIVDTYATLIDPERSL--DPKIVELTG 480
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + + + F ++ +N FD + R D W
Sbjct: 481 ITNEMV----AGQPKLREALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDP----W 532
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ D L + R +Y G ++KL+ L ++ VN H A AD
Sbjct: 533 EQ--PVIDTLALARVLYP-------------GEKNYKLKTLTQKFSVDLVNHHRALADSE 577
Query: 183 ATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
AT + V ++++ K + L D N LR IDI + P
Sbjct: 578 ATAKVFVHMLKDAKARGIHNLLDM---NHLRGQIDISRVRPF 616
>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens CPE str. F4969]
gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens CPE str. F4969]
Length = 876
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A ++++++ E ++ E F ++ ++ G
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKK----SVKDSYYVHGF 564
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G + + + +F II +N+++D NI S
Sbjct: 565 SDEMLQRIG---EDKEKVLKEFVEYSKDSIIVGHNVQYD----INILCSELERS-NLGKP 616
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 617 KFKTFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 663
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 664 TGELLVRAINEK 675
>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus halodurans C-125]
gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
Length = 942
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M N FV+ D ET G+ VA DR + V ++ + E +ES FC L +PE
Sbjct: 1 MNNRFVVIDIETTGQSVAQGDRIIEIGAVVIEDE-EAVES----FCT-----LVNPERSI 50
Query: 60 ITGITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I + D +V+ F + I + S+ + +N+ FD + + + Y
Sbjct: 51 PPFIEELTGISDEMVKGAPTFHQCIPELMSMLEGGVFVAHNVHFDLSFLQKLLEHEGY-- 108
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
G ++D + I P+ + S+KL L G+EH N H A
Sbjct: 109 -------GPLLVPIIDTVEL------SRILLPTEE----SYKLSALTEQLGLEHENPHRA 151
Query: 178 KADVYAT 184
+D T
Sbjct: 152 DSDAKVT 158
>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
Length = 933
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--LPDPEA 57
M N +V+ D ET G D+ QFA V ++ K ++Y L +PE
Sbjct: 1 MGNKYVVVDLETTGNAPKKGDKIIQFAAVVIEN------------GKITEEYSSLVNPEQ 48
Query: 58 VFITGITPQKALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
I L D +VE FS + ++ +N+ FD + + Y
Sbjct: 49 SIPPFIEELTGLSDEMVENAPLFSEIAPKVLTLLEGAYFVAHNVLFDLSFLQEELIEAGY 108
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ + D +++ R I +P+ D SFKL DLAL G+ H H
Sbjct: 109 NGFY------GPVLDTVEMAR---------ILFPTAD----SFKLSDLALREGLNHERPH 149
Query: 176 DAKADVYAT 184
A +D Y T
Sbjct: 150 QADSDAYVT 158
>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens E str. JGS1987]
gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens E str. JGS1987]
Length = 876
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 26/192 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +++D E+ G DV D Q A +++++ E ++ E F ++ ++ G
Sbjct: 509 NIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKK----SVKDSYYVHGF 564
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + R G + + + +F II +N+++D NI S
Sbjct: 565 SDEMLQRIG---EDKEKVLKEFVEYSKDSIIVGHNVQYD----INILCSELERS-NLGKP 616
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +D LD+ R Y G ++KL++L+ +H +HDA D+ A
Sbjct: 617 KFKTFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPSHDAMDDIIA 663
Query: 184 TLA-LVWLIREK 194
T LV I EK
Sbjct: 664 TGELLVRAINEK 675
>gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b]
gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b]
Length = 222
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + D W + T F +P + + +PEA+ TG
Sbjct: 20 VVIDVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFD 102
I P LR V E + I + S N II +N FD
Sbjct: 80 IDPSNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFD 125
>gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB]
gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB]
Length = 222
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + + + W +I+ T F +P L PEA+ TG
Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFD 102
I P LR V E E I + S N I+ +N FD
Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFD 125
>gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1]
gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1]
Length = 222
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + + + W +I+ T F +P L PEA+ TG
Sbjct: 20 VVIDVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFD 102
I P LR V E E I + S N I+ +N FD
Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFD 125
>gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 221
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRV--DRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A V + D++ W IE + F +P +PEA+ G
Sbjct: 27 VVIDVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNG 86
Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYR 112
I P LRD E E ++I ++ II +N FD + N R
Sbjct: 87 IDPHSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKR 142
>gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131]
gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131]
Length = 214
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + ++D+ W ++ T F +P + +P A+ TG
Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV---------PNTCIIGYNNIRFDDYYSRNIFYR 112
I P LR V E E +H F V N II +N FD + N R
Sbjct: 80 IDPTNPLRGAVSEYE---ALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAER 135
>gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
Length = 244
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 23/202 (11%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFIT 61
V +D ET G + + + A +RV++ +S +VF P + +P + V +T
Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT ++ +G+ E E + R + ++ + N +FD ++ + R+
Sbjct: 74 GITDEQLENEGITETEAAARFTELIGGGRVLLVAH-NAQFDLLFTAEMLRRH-------- 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKAD 180
+ G D + ++ + D +P + A ++KL+D + N+H A D
Sbjct: 125 GNGGPEVLKAADYLDSLTVYK-DRRAYPHKLANAILTYKLED-------KVQNSHRAIDD 176
Query: 181 VYATLALVWLIREKKPKLFEYL 202
V A + + ++ L Y+
Sbjct: 177 VAALFEVCKAMDAERSDLLSYV 198
>gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris
vibrioformis DSM 265]
gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium
phaeovibrioides DSM 265]
Length = 194
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 25/195 (12%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D + QFAG+ + +ES E+ +P + D EA+ +TG T ++
Sbjct: 7 FDLETTGIDPERNGIIQFAGL-AEIDGAVVESFEIK-MQPHEGAQIDDEALEVTGFT-RE 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCI--------IGYNNIRFDDYYSRNIFYRNFYDSYR 119
A+ AE R+I F + + GYN + FD + +F R +D Y
Sbjct: 64 AIPTFTPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYN-VHFDLEFLSRMFKR--FDQYG 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDG-IQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ W +LD + G I P+ +LQ G++ NAHDA
Sbjct: 121 LG---SFTNWRMLDPQPILNLMDYMGRISLPNH-------RLQTACDHFGVKLENAHDAL 170
Query: 179 ADVYATLALVWLIRE 193
AD+ AT AL+ + E
Sbjct: 171 ADITATRALMQRLLE 185
>gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit
[Aerococcus viridans ATCC 11563]
gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit
[Aerococcus viridans ATCC 11563]
Length = 957
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 27/151 (17%)
Query: 48 ADDYLPDPEA----VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103
A D P+ E +TGIT ++ R EA + + Q S NT I+ +N I FD
Sbjct: 44 ATDIFPNQEIPREITKLTGITNEQVKRAPKFEA-VAEILWQKLS--NTVIVAHN-IGFDY 99
Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
+ F + Y + + R D ++++R ++ P+ D S+KL +
Sbjct: 100 KFLDKSFQAHGYPAMT------HDRVDTVEMVRTLF---------PTAD----SYKLGEF 140
Query: 164 ALANGIEHVNAHDAKADVYATLALVWLIREK 194
LA+GI+ NAH A D AT ++ + +EK
Sbjct: 141 CLAHGIQLENAHTAIDDAVATAHILIMCQEK 171
>gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103]
gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103]
gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355]
Length = 223
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 15/109 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + + D W + T F +P L PEA+ TG
Sbjct: 20 VVIDVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV---------PNTCIIGYNNIRFD 102
I P LR V E E +H F + N I+ +N FD
Sbjct: 80 IDPSNPLRGAVSEYE---ALHAIFKLVRKGIKDTGCNRAIMVAHNATFD 125
>gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont]
Length = 222
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + + W + T F +P + + +PEA+ TG
Sbjct: 20 VVIDVETAGFNAQTDALLEIAATTLKMDEDGWLHRDETLHFHVEPFEGAILNPEALAFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYY 105
I P LR V E E I + S N II +N FD +
Sbjct: 80 IDPSNPLRGAVSEYEALHAIFKMVRKGTKDSGCNRAIIVAHNATFDHNF 128
>gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
Length = 300
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 39/187 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFA-----GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++YD ET G + D P G + + + E T+ + P+A I
Sbjct: 135 IVYDLETTGVNPWKDEPLSMCIMDLQGKVIFEHYFRPEHTKSW-----------PDAAAI 183
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GITP+K + + + + +I + F + +I YN I FDD +F ++
Sbjct: 184 HGITPEKVANESPM-SFYRDQIQKIFDASDI-LITYNGINFDD---------SFLEA--- 229
Query: 121 SWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
G +++ DVMR D W G ++L D A G E +AHDA
Sbjct: 230 ---AGIKLPEVMQFDVMREYAWLIHD---WDEYHQGWRWWRLIDCAAYYGYE-FSAHDAA 282
Query: 179 ADVYATL 185
DV ATL
Sbjct: 283 EDVKATL 289
>gi|156403085|ref|XP_001639920.1| predicted protein [Nematostella vectensis]
gi|156227051|gb|EDO47857.1| predicted protein [Nematostella vectensis]
Length = 509
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 230 FGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP 289
G ++ +TA++ WHP+ K+ I C+ G +R++ D++S + K + + ++ +G
Sbjct: 130 MGNTKGHTAMLHCACWHPKQKEQFITCSNDGTVRIW-DVNSPKKNKNVIKTKNK-QGKKT 187
Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL 337
+P + ++ + C+ + W D KR + T L+++ ++
Sbjct: 188 IPTRCCFSRDGKLI--VAACQDGSIQAW--DTKRMFVHTTYLQREAHM 231
>gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
1100]
gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 282
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 33/219 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D E G +V DR Q A ++ + + + + L EA+ + GI P+
Sbjct: 12 FDIEATGLNVVRDRIVQIAIIKYFKDGREPQELSLMINPGIPISL---EAILVHGIQPKD 68
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + +++I F + N + GYN+ RFD F R +D
Sbjct: 69 VANKPTFQ-QLAQKIWDF--IGNADLAGYNSNRFDIPMLMEEFAR-----VGMEFDVTKR 120
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
R +DV R Y P ++ A F + EH +AHDA ADV AT+ +
Sbjct: 121 RS--IDVQRIFYKMEPRTLK------AALKFYCEK-------EHEDAHDAMADVRATIDV 165
Query: 188 VWLIREKKPKLFEYL-YDYRNKNQLRKLIDIQNMTPLVH 225
K +L +Y DY +++ +R I+N ++H
Sbjct: 166 F------KGQLDKYEGVDYLDEDGVRVEAPIKNDVQVLH 198
>gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
Length = 212
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + ++D Q W K ++T F +P + +P A+ TG
Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV---------PNTCIIGYNNIRFDDYY 105
I P LR V E E +H F + N II +N FD +
Sbjct: 80 IDPTNPLRGAVSEYE---ALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSF 128
>gi|90409684|ref|ZP_01217701.1| hypothetical protein P3TCK_02936 [Photobacterium profundum 3TCK]
gi|90329037|gb|EAS45294.1| hypothetical protein P3TCK_02936 [Photobacterium profundum 3TCK]
Length = 279
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 196 PKLFE--YLYDYRNK-NQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAW--HPRYK 250
P+LF YL+D+ + +QL + ID + +T L+ + A + + L+A +A H +
Sbjct: 48 PELFSTGYLFDHPGEIHQLAESIDGKTVTSLITL-----AKKYHVTLVAGIAEKRHGEFY 102
Query: 251 DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL 284
+SVI N SG V++ L + K+ F+ DEL
Sbjct: 103 NSVIVVNESGLQEVYRKLALTNVDKQYFSRGDEL 136
>gi|169839866|ref|ZP_02873054.1| hypothetical protein cdivTM_22527 [candidate division TM7
single-cell isolate TM7a]
Length = 50
Score = 37.7 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
N +EH AHDA +DV A +A+ LI + +LF YL
Sbjct: 6 NNLEHTKAHDALSDVEALIAVTKLIAKTNNRLFNYL 41
>gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 290
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 30/183 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G + D+ V+ D TE + D +P + V +TGIT
Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHD-------GTEFYRLIKQDIDVP-KQIVELTGIT 177
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P +DGV + + F V + I+GYN RFD + + + +
Sbjct: 178 PAMLDKDGVPLQDVLGELTDF--VGDVPIVGYN-FRFDSAFLNREYRKCGMQELK----- 229
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N DLL V++ F ++KLQ + GIE+ H+A +D AT
Sbjct: 230 -NEIKDLLPVVKRKEKF-------------LDNYKLQTVLSNYGIENKVPHNAVSDARAT 275
Query: 185 LAL 187
L
Sbjct: 276 KEL 278
>gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
35910]
gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
35910]
Length = 407
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 28/190 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D E+ G + A R D Q KI + P D P + +T IT
Sbjct: 2 YSIIDIESNGAGYRNECIIDIAIYRYDGQ--KITDQFISLVNPEGDITPFVQK--LTSIT 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P K ++ E ++R+ + NT ++G+N I FD R F R YD
Sbjct: 58 P-KMVKTAPKFHEIAKRVIEI--TQNTTLVGHN-IDFDYRMLRQSFKRLGYDF------- 106
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+ + LD + PD + S+ L L + GI N H A+ D AT
Sbjct: 107 ---KINTLDTIPLAKKLIPDEV----------SYSLGKLVKSLGIPLTNHHRAEGDARAT 153
Query: 185 LALVWLIREK 194
L L L+ K
Sbjct: 154 LELFKLLISK 163
>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Veillonella atypica ACS-134-V-Col7a]
gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Veillonella atypica ACS-134-V-Col7a]
Length = 861
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 40/196 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D DR Q A +R+D+ +IE E F P + + G T
Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFI-NPGKSV---GTSQLVHGFTD 550
Query: 66 QKALRDG-----VVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
G V+EA EFS N I+G+ N+ +D + R+
Sbjct: 551 AYLAEHGESPKVVLEAFKEFSN---------NRIIVGH-NVNYDISILSHELARHNLGEP 600
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++ + +D LD+ R Y P+ ++ F L+ I H H+A
Sbjct: 601 QF-----KAVYDTLDIFRRFY---------PTLENHKLGF----LSKYFPINHTPTHNAM 642
Query: 179 ADVYAT-LALVWLIRE 193
D+ AT L++ +RE
Sbjct: 643 DDIIATGQLLIYAVRE 658
>gi|295132929|ref|YP_003583605.1| transcriptional regulator AraC family protein [Zunongwangia
profunda SM-A87]
gi|294980944|gb|ADF51409.1| transcriptional regulator, AraC family protein [Zunongwangia
profunda SM-A87]
Length = 280
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
L+ + K++HF + I+ KR E + LL + L +R Y K S++ ++ L +
Sbjct: 146 LLQLIQLKEQHFTQHDINEKRIYEFMLLL-ENYYLEERDTGFYAKQLGLSAKRLNQILKE 204
Query: 363 GFFADVDRQIMDRILRTAPEQLS---------TLNLPFSDRRLPELFFRYRARNFPHTLS 413
+ I DR++ A Q+ + NL F DR FF+ P
Sbjct: 205 KLDKTGLQLIHDRLILEAKRQIIHSENTIKEISFNLRFKDRSYFSRFFKQHTGMTPQEFQ 264
Query: 414 EKEKQDWLEHRKKMLT 429
E KQ ++H +++
Sbjct: 265 ESVKQHVIQHENTLIS 280
>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
Length = 861
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 40/196 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D DR Q A +R+D+ +IE E F P + + G T
Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFER-FINPGKSV---GTSQLVHGFTD 550
Query: 66 QKALRDG-----VVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
G V+EA EFS N I+G+ N+ +D + R+
Sbjct: 551 AYLAEHGESPKVVLEAFKEFSN---------NRIIVGH-NVNYDISILSHELARHNLGEP 600
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++ + +D LD+ R Y P+ ++ F L+ I H H+A
Sbjct: 601 QF-----KAVYDTLDIFRRFY---------PTLENHKLGF----LSKYFPINHTPTHNAM 642
Query: 179 ADVYAT-LALVWLIRE 193
D+ AT L++ +RE
Sbjct: 643 DDIIATGQLLIYAVRE 658
>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
Length = 240
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
Length = 929
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 73/195 (37%), Gaps = 29/195 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ + D ET G D DR QF V V Q KI + P + +P + +TGI+
Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV--QDGKIIANFATDVNP-NQVVPK-QIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-DYYSRNIFYRNFYDSYRWSWD 123
+ + F H + I +N+ FD D+ +R +
Sbjct: 69 NTQVQKAPY----FEDVAHTIYHYLEDTIFVAHNVHFDYDFLARELV----------RCG 114
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D + F P SF+L DL+ + G+ H N H A +D
Sbjct: 115 TPPLTIPAIDTVELAQIFLPT----------EKSFRLSDLSESLGLSHENPHQADSDAQV 164
Query: 184 TLALVWLIREKKPKL 198
T L+ LI+EK L
Sbjct: 165 TAELLLLIQEKMKSL 179
>gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 290
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 73/183 (39%), Gaps = 30/183 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G + D+ V+ D TE + D +P + V +TGIT
Sbjct: 126 FVAVDIETTGLNTETDQILSIGAVKHD-------GTEFYRLIKQDIDVP-KQIVELTGIT 177
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++GV + + F V N I+GYN RFD + + + +
Sbjct: 178 SEMLSKEGVPLQDALEELTDF--VGNVPIVGYN-FRFDSAFLNRDYRKCGMQELK----- 229
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N DLL V++ F + +KLQ + GIE+ H+A +D AT
Sbjct: 230 -NEIKDLLPVVKRKEKFLDN-------------YKLQTVLSNYGIENKVPHNAVSDARAT 275
Query: 185 LAL 187
L
Sbjct: 276 KEL 278
>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
Length = 929
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 70/194 (36%), Gaps = 27/194 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ + D ET G D DR QF V V Q KI + P + +P + +TGI+
Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV--QEGKIIANFATDVNP-NQVVPK-QIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + F H + I +N+ FD NF
Sbjct: 69 NTQVQKAPY----FEDVAHTIYHYLEDTIFVAHNVHFD---------YNFLARELVRCGT 115
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 116 PPLTIPAIDTVELAQIFLPT----------EKSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
Length = 929
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 71/198 (35%), Gaps = 35/198 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV-FI 60
+ + D ET G D DR QF V V Q KI A D P+ P+ + +
Sbjct: 13 YAVVDLETTGTDPTSDRIIQFGCVLV--QEGKI------IANFATDVNPNQVVPKQIQSL 64
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + + F H + I +N+ FD NF
Sbjct: 65 TGISNTQVQKAPY----FEDVAHTIYHYLEDTIFVAHNVHFD---------YNFLARELV 111
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + F P SF+L DL+ + G+ H N H A +D
Sbjct: 112 RCGTPPLTIPAIDTVELAQIFLPT----------EKSFRLSDLSESLGLSHENPHQADSD 161
Query: 181 VYATLALVWLIREKKPKL 198
T L+ LI+EK L
Sbjct: 162 AQVTAELLLLIQEKMKSL 179
>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
Length = 892
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 34/217 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D ET G DV D + + +++ R ++I T + LP GI
Sbjct: 510 IVVFDTETTGLDVFNDDIIEISAIKI-RNGKQIGKTLDLYIYTDKTILPK------LGIK 562
Query: 65 PQ-------KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ L G + +++F + I+ +NI +D + N R
Sbjct: 563 DNPLYEIYNEKLNSGEL-INIKEALNEFLKFADNSILMAHNINYDYHILDNCLRR----- 616
Query: 118 YRWSWDN-GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ DN N + D ++ I P S+KL+ L +E VN+H
Sbjct: 617 --YTGDNLNNYNFKYFDSLKIIRLLEP----------SLRSYKLEHLLDKFQLEGVNSHQ 664
Query: 177 AKADVYATLALV-WLIREKKPKLFEYLYDYRNKNQLR 212
A DV+AT+ L+ + + KP + + L ++K R
Sbjct: 665 AIDDVWATVNLINYCAKRVKPIVSQQLNFLKDKQVFR 701
>gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320]
gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320]
gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
Length = 212
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGV--RVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G + D + A + ++D Q W K ++T F P + +P A+ TG
Sbjct: 20 VVIDVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTG 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV---------PNTCIIGYNNIRFDDYY 105
I P LR V E E +H F + N II +N FD +
Sbjct: 80 IDPTNPLRGAVSEYE---ALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSF 128
>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
Length = 929
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A]
gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A]
Length = 227
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDR---QWEKIESTEVFFCK--PADDYLPDPEAVF 59
+++D+ET G D+ + V +++ +E ++ + + P D++ +
Sbjct: 8 ILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISN----- 62
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGIT + RDGV E R++ +T ++ Y N+ FD + ++ Y ++
Sbjct: 63 LTGITNEMLARDGVEEEYAFRQLDNLID-EDTLLVAY-NLAFDIGFLSALY--QTYVAHN 118
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N D+LD M A+Y D +P + + A + L+N H + DAKA
Sbjct: 119 YKIQN-----DILDCM-AVY---KDRYPYPHKLENAVA----RFELSNNQAHRASEDAKA 165
>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
Length = 929
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
Length = 929
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
Length = 929
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 929
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
Length = 929
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus sp. 7L76]
gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
Length = 929
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1RF]
Length = 929
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
Length = 929
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
Length = 929
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
Length = 929
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
Length = 929
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
Length = 929
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
Length = 929
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
Length = 929
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
Length = 929
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
Length = 314
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 35/207 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V+ D ET G + D + + +R+ D Q ++ ST V +P ++ + +TGI
Sbjct: 25 YVMIDIETTGLKPSNDEILELSAIRIRDHQMDRTFSTLVQPNRPISGFITN-----LTGI 79
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY--RW 120
+ + +E + I +F + I+GYN + FD + YD+ +
Sbjct: 80 SNHMVMTAPPIE----QAIPEFLDFIQEDIILGYN-VNFDLSF--------IYDTAVNLY 126
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
++ N D+L + R + +P+ KL +A GI + AH D
Sbjct: 127 NFPVRNDYLDVLTIARKLVTETPN-------------HKLGTMAQFYGISYEGAHRGLTD 173
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRN 207
Y T+ + + + ++++ D++N
Sbjct: 174 CYITVEVYNQLFNQAKQVYQSEQDFKN 200
>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
Length = 929
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
Length = 929
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
Length = 929
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
Length = 929
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
Length = 929
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
Length = 929
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
SF+L DL+ + G+ H N H A +D T L+ LI+EK L
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEKMKSL 179
>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
Length = 175
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
SF+L DL+ + G+ H N H A +D T L+ LI+EK
Sbjct: 138 SFRLSDLSESLGLSHENPHQADSDAQVTAELLLLIQEK 175
Searching..................................................done
Results from round 2
>gi|157371451|ref|YP_001479440.1| exonuclease I [Serratia proteamaculans 568]
gi|157323215|gb|ABV42312.1| Exodeoxyribonuclease I [Serratia proteamaculans 568]
Length = 475
Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats.
Identities = 258/467 (55%), Positives = 340/467 (72%), Gaps = 2/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F I+DYETFG ++DRPAQFAGVR D + IE V +C PADDYLPDPEAV ITGI
Sbjct: 8 TFYIHDYETFGISPSMDRPAQFAGVRTDMDFNIIEEPLVIYCTPADDYLPDPEAVMITGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ AL GV EAEF+R+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 TPQLALAKGVNEAEFTRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLDVMRA YA PDGI WP +DG SF+L+ L ANG+EH +AHDA +DVYA
Sbjct: 128 NGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ L+++ +P+LF++L +RNK++L LIDI MTPLVHVSGMFGA+R NT+ ++P+
Sbjct: 188 TIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP K++VI C+L+GDM L + +L +RL+T ++L G PVPIK VH+NKCP+
Sbjct: 248 AWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAPGQSPVPIKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L P E+ ER GID + CL+NL LLRQ +R++ A++ S DVD++LY
Sbjct: 308 LAPAKTLLPENAERLGIDRQACLQNLQLLRQHPQVREKVVALFADAEPFKGSDDVDARLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D D+ M I +T P+ L L+L F+D RL EL FR+RARN+P+TL + E++ WL
Sbjct: 368 DGFFSDADKATMKIIQQTKPQNLPALDLTFNDGRLKELLFRFRARNYPNTLDDTEQRRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R++ Y +L+SL ++GD+ K L+ AL+EY + ++
Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDQEKTALLKALFEYGKELV 474
>gi|238755403|ref|ZP_04616744.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
gi|238706340|gb|EEP98716.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
Length = 476
Score = 744 bits (1922), Expect = 0.0, Method: Composition-based stats.
Identities = 257/469 (54%), Positives = 338/469 (72%), Gaps = 2/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT
Sbjct: 7 SPTFYVHDYETFGQHPALDRPAQFAGVRTDLDFNIIEEPLVVYCSPADDYLPQPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL G+ EAEFS++IHQ FSV TCI+GYNNIRFDD SRNIFYRNFYD Y +S
Sbjct: 67 GITPQTALAKGINEAEFSQQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DV
Sbjct: 127 WQNGNSRWDLLDVMRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
+AT+AL L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIALAKLVKQAQPRLFDYLYQHRSKHKISALIDIAEMTPLVHVSGMFGAARGNTSWVA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+AWHP K++VI C+L+GD+ +LD+ L +RL+T D+L VPIK VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDISPLLELDAETLRERLYTRRDKLSADQAAVPIKLVHINKC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L P E+ ER ID +RCL+NL +LRQ +R++ ++ + P ++S DVD+Q
Sbjct: 307 PVLAPAKTLLAENAERLAIDRQRCLQNLQVLRQNPQIREKVVTLFAESPPFAASSDVDAQ 366
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF D DR M I +TAP+ L L+L F D RL EL FR+RARN+P+TL + E++
Sbjct: 367 LYDGFFGDADRATMKIIQQTAPQNLPALDLSFQDPRLTELLFRFRARNYPNTLDDSEQRR 426
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W HR++ML+ R++EY +L+ Y+ D+ K L+ LY+Y + ++
Sbjct: 427 WQNHRREMLSPERVQEYVQQLEQFYNLYESDKEKLALLKDLYDYARELV 475
>gi|295098241|emb|CBK87331.1| Exodeoxyribonuclease I subunit C [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 478
Score = 743 bits (1920), Expect = 0.0, Method: Composition-based stats.
Identities = 244/467 (52%), Positives = 332/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TG
Sbjct: 12 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTG 71
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW
Sbjct: 72 ITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 131
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLD+MRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 132 QNRNSRWDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 191
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP
Sbjct: 192 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 251
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T + L L VP+K VH+NKCP+
Sbjct: 252 LAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKEALGDLPAVPVKLVHINKCPV 311
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR +R++ AI+ + S++VD+QLY
Sbjct: 312 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 371
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 372 NGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 431
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ + T + Y +L+ L G+Y+G+ K+ L+ AL++Y Q ++
Sbjct: 432 QHRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 478
>gi|270262717|ref|ZP_06190988.1| exonuclease I [Serratia odorifera 4Rx13]
gi|270043401|gb|EFA16494.1| exonuclease I [Serratia odorifera 4Rx13]
Length = 475
Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats.
Identities = 253/467 (54%), Positives = 340/467 (72%), Gaps = 2/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F I+DYETFG+ ++DRPAQFAGVR D + IE V +CKPADDYLPDPEAV ITGI
Sbjct: 8 TFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPEAVMITGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ AL G+ EA+F+R IHQ FSVP TCI+GYNNIRFDD SRNIFYR+FYD Y +SW
Sbjct: 68 TPQLALAKGINEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYDPYAYSWQ 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+EH +AHDA +DVYA
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ L+++ +P+LF++L +RNK++L LIDI MTPLVHVSGMFGA+R NT+ ++P+
Sbjct: 188 TIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP K++VI C+L+GDM L + +L +RL+T ++L PVPIK VH+NKCP+
Sbjct: 248 AWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L P E+ ER GID + CL+NL LLRQ +R++ A++ + DVD++LY
Sbjct: 308 LAPAKTLLPENAERLGIDRQACLQNLQLLRQNPQVREKVVALFADAEPFKAVDDVDARLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D D+ M I +T P+ L L+L FSD R+ EL FR+RARN+P+TL + E++ WL
Sbjct: 368 DGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTLDDAEQRRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ L+ R++ Y +L+SL ++GD+ K L+ AL+EY + ++
Sbjct: 428 QHRQEALSAERVQSYVLQLESLYNLHEGDKEKTALLKALFEYGKELV 474
>gi|259908083|ref|YP_002648439.1| exonuclease I [Erwinia pyrifoliae Ep1/96]
gi|224963705|emb|CAX55202.1| Exodeoxyribonuclease I [Erwinia pyrifoliae Ep1/96]
gi|283477982|emb|CAY73898.1| exodeoxyribonuclease I [Erwinia pyrifoliae DSM 12163]
Length = 475
Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats.
Identities = 251/467 (53%), Positives = 338/467 (72%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITG
Sbjct: 8 PTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD SRN+FYRNFYD Y WSW
Sbjct: 68 ITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVY
Sbjct: 128 QHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ ++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IAP
Sbjct: 188 ATIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I C+L GDM +LD+ L RL+T +EL G PVP+K VH+NKCP+
Sbjct: 248 LAWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
+ P + + E ER GID +RCL+NL LLRQ +RD+ ++ + S DVD+QLY
Sbjct: 308 VAPANTLRAEDAERIGIDRQRCLDNLALLRQHPEVRDKVVTLFADAQPFTPSDDVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q WL
Sbjct: 368 NGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ML R++ Y +L+ L +Y+GD ++ + AL+ Y+Q ++
Sbjct: 428 QHRRQMLNPERVQGYVQELEMLFNQYEGDRARQEQLKALFAYMQELV 474
>gi|284919774|emb|CAX65551.1| putative exonuclease I [Enterobacter hormaechei]
Length = 502
Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TG
Sbjct: 36 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTG 95
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW
Sbjct: 96 ITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 155
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLD+MR YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 156 QNRNSRWDLLDIMRVCYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 215
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP
Sbjct: 216 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 275
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +L+S L +RL+T + L L VP+K VH+NKCP+
Sbjct: 276 LAWHPDNRNAVIMVDLAGDISPLLELNSDTLRERLYTPKEALGDLPAVPVKLVHINKCPV 335
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR +R++ AI+ + S++VD+QLY
Sbjct: 336 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 395
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 396 NGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 455
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ + T + Y +L+ L G+Y+G+ K+ L+ AL++Y Q ++
Sbjct: 456 QHRRNVFTPEFLNSYAQELEMLYGQYEGNAEKQALLKALFQYAQEIV 502
>gi|238789860|ref|ZP_04633641.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
gi|238722056|gb|EEQ13715.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
Length = 476
Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats.
Identities = 264/468 (56%), Positives = 345/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +CKPADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCKPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVH 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI NMTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIVNMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM LDS L +RL+T D+L G VP+K VH+NKCP
Sbjct: 248 LAWHPDNKNAVIMCDLAGDMSPLLSLDSDTLRERLYTRRDKLNAGDAAVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ ER GID +RCLENL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAQAEAFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T P+ L L+L F D RL LFFR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATMKIILQTEPQNLPALDLTFQDSRLEPLFFRFRARNYPNTLTDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
LEHR+ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LEHRRAALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARSLV 475
>gi|188533503|ref|YP_001907300.1| exonuclease I [Erwinia tasmaniensis Et1/99]
gi|188028545|emb|CAO96407.1| Exodeoxyribonuclease I [Erwinia tasmaniensis Et1/99]
Length = 475
Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats.
Identities = 249/467 (53%), Positives = 341/467 (73%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV +TG
Sbjct: 8 PTFLFHDYETFGTSPSLDRPAQFAALRTDMDFNPIGEPEVFYCRPADDYLPQPEAVMVTG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ EAEF++RIHQ FS PNTC++GYNN+RFDD SRN+FYRNFYD Y WSW
Sbjct: 68 ITPQIARARGLNEAEFTQRIHQLFSAPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVY
Sbjct: 128 QHGNSRWDLLDVMRACYALRPDGIVWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ ++EK+P+L+++LY +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IAP
Sbjct: 188 ATIAMAKRVKEKQPRLYDFLYAHRNKQKIGALIDIPQMKPLVHISGMFGAARGNTSWIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I C+L GDM +LD+ L +RL+T +EL G PVP+K VH+NKCP+
Sbjct: 248 LAWHPDNRNALITCDLGGDMAPLLELDADALRERLYTRREELNGASPVPLKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
+ P + + E ER GID +RCL+NLTLLRQ +R++ ++ + S+DVD+QLY
Sbjct: 308 VAPANTLRPEDAERIGIDRQRCLDNLTLLRQHPEVREKVVTLFAEAQPFIPSEDVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q WL
Sbjct: 368 NGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDAEQQSWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+++L R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++
Sbjct: 428 QHRREVLNPERVQGYVQELEMLFNQYEGDKTRQEQLKALFAYMQELV 474
>gi|310768007|gb|ADP12957.1| exonuclease I [Erwinia sp. Ejp617]
Length = 475
Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats.
Identities = 249/467 (53%), Positives = 339/467 (72%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITG
Sbjct: 8 STFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ EAEF+ RIHQ FSVPNTC++GYNN+RFDD SR++FYRNFYD Y WSW
Sbjct: 68 ITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRHLFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVY
Sbjct: 128 QHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ ++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R NT+ IAP
Sbjct: 188 ATIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I C+L GDM +LD+ L RL+T +EL G PVP+K VH+NKCP+
Sbjct: 248 LAWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
+ P + + E ER GID +RCL+NL LLRQ +R++ ++ + S DVD+QLY
Sbjct: 308 VAPANTLRAEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFADAQPFTPSDDVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL + E+Q WL
Sbjct: 368 NGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDMEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++ML R++ Y +L+ L +Y+GD ++ + AL+ Y+Q ++
Sbjct: 428 QHRRQMLNPERVQGYVQELEILFNQYEGDRARQEQLKALFAYMQELV 474
>gi|238761111|ref|ZP_04622088.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238761364|ref|ZP_04622340.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238700338|gb|EEP93079.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238700591|gb|EEP93331.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
Length = 476
Score = 741 bits (1914), Expect = 0.0, Method: Composition-based stats.
Identities = 258/469 (55%), Positives = 343/469 (73%), Gaps = 2/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT
Sbjct: 7 SPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+AL GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S
Sbjct: 67 GITPQQALAKGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
+AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 HATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDISDMTPLVHVSGMFGAARGNTSWVA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKC 300
P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L +P+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLNAQDAAIPLKLVHINKC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L P E+ ER GID +RCL NL LLRQ +R++ A++ + + S DVD+Q
Sbjct: 307 PVLAPAKTLLAENAERLGIDRQRCLRNLQLLRQNPQIREKVVALFAEAEPFAVSDDVDAQ 366
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q
Sbjct: 367 LYNGFFSDADRATMKIILQTDPQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WL HR++ L R++EY +L+ +Y+GD+ K L+ AL++Y + ++
Sbjct: 427 WLAHRREALNPERVQEYVLQLEQFYNQYEGDKEKLALLKALFDYARDLV 475
>gi|300920252|ref|ZP_07136698.1| exonuclease [Escherichia coli MS 115-1]
gi|301018905|ref|ZP_07183135.1| exonuclease [Escherichia coli MS 196-1]
gi|299882459|gb|EFI90670.1| exonuclease [Escherichia coli MS 196-1]
gi|300412754|gb|EFJ96064.1| exonuclease [Escherichia coli MS 115-1]
Length = 499
Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 33 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 92
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 93 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 152
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 153 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 212
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 213 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 272
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 273 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 332
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 333 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 392
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 393 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 452
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 453 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|288549827|ref|ZP_05968320.2| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
gi|288317556|gb|EFC56494.1| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
Length = 478
Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV +TG
Sbjct: 12 PTFLFHDYETFGTHPALDRPAQFAAIRTDEDFNIIGEPEVFYCKPADDYLPQPGAVMVTG 71
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RNIFYRNFYD Y WSW
Sbjct: 72 ITPQEARDKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 131
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLD+MRA +A P+GI WP ++G TSF+L+ L ANGIEH NAHDA ADVY
Sbjct: 132 QNRNSRWDLLDIMRACHALRPEGITWPENEEGLTSFRLEHLTRANGIEHSNAHDAMADVY 191
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ +P+LF+YL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP
Sbjct: 192 ATIAMAKLVKTAQPRLFDYLLSHRSKQKLITLIDVPQMKPLVHISGMFGAWRGNTSWVAP 251
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T D L + VP+K VH+NKCP+
Sbjct: 252 LAWHPDNRNAVIMVDLAGDISPLLELDSDALRERLYTPKDALGDVPAVPVKLVHINKCPV 311
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR +R++ AI+ + S++VD+QLY
Sbjct: 312 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVREKVVAIFAEAEPFVPSENVDAQLY 371
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 372 NGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQERWL 431
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ + T ++ Y +L+ L Y GD K+ + ALY+Y+Q ++
Sbjct: 432 QHRRNIFTPEFLQRYAEELEMLYSHYNGDAEKQAQLKALYQYVQEIV 478
>gi|291618007|ref|YP_003520749.1| SbcB [Pantoea ananatis LMG 20103]
gi|291153037|gb|ADD77621.1| SbcB [Pantoea ananatis LMG 20103]
Length = 473
Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats.
Identities = 246/466 (52%), Positives = 325/466 (69%), Gaps = 1/466 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ +DYETFG + DRPAQFAG+R D + + EVF+C+P DDYLP PEAV ITGI
Sbjct: 7 TFLFHDYETFGTSPSRDRPAQFAGLRTDSNFNPVGEPEVFYCRPPDDYLPQPEAVMITGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A GV EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 67 TPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWSWQ 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+ H NAHDA +DVYA
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 186
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
TLA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ + P+
Sbjct: 187 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
AWHP ++++I +L+GDM LD+ L +RL+T EL +P+K VH+NKCP+L
Sbjct: 247 AWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHINKCPVL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
P + + E R GID K CL+NL LRQ +R++ AI+ + S DVD+QLYD
Sbjct: 307 APANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSDDVDTQLYD 366
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q WL+
Sbjct: 367 GFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAEQQRWLQ 426
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++L +++ + +L+SL+ ++ D+ K + ALY Y Q ++
Sbjct: 427 HRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELV 472
>gi|296103672|ref|YP_003613818.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295058131|gb|ADF62869.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 474
Score = 740 bits (1912), Expect = 0.0, Method: Composition-based stats.
Identities = 244/467 (52%), Positives = 334/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV +TG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A GV EAEF+RRIH F+VP+TC++GYNNIRFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEAREKGVNEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLD+MRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QNRNSRWDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ +P+LFEYL +R+K +L LID+ M PLVH+SGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T D L L VP+K VH+NKCP+
Sbjct: 248 LAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKDALGDLPAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + S++VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++ WL
Sbjct: 368 NGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQECWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ + T + Y +L+ L G+Y+G+E K+ L+ AL+ Y+Q ++
Sbjct: 428 QHRRNVFTPEYLHGYAQELEMLYGQYEGNEEKQALLKALFRYVQEIV 474
>gi|324016993|gb|EGB86212.1| exonuclease [Escherichia coli MS 117-3]
Length = 499
Score = 740 bits (1912), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 33 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 92
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 93 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 152
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 153 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 212
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 213 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 272
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 273 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 332
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 333 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 392
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 393 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 452
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 453 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|157161503|ref|YP_001458821.1| exonuclease I [Escherichia coli HS]
gi|157067183|gb|ABV06438.1| exodeoxyribonuclease I [Escherichia coli HS]
Length = 475
Score = 740 bits (1912), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|300824755|ref|ZP_07104860.1| exonuclease [Escherichia coli MS 119-7]
gi|300522742|gb|EFK43811.1| exonuclease [Escherichia coli MS 119-7]
Length = 499
Score = 740 bits (1912), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 33 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 92
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 93 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 152
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 153 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 212
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 213 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 272
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 273 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 332
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 333 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 392
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 393 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 452
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 453 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|153949389|ref|YP_001401389.1| exonuclease I [Yersinia pseudotuberculosis IP 31758]
gi|152960884|gb|ABS48345.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 31758]
Length = 476
Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats.
Identities = 259/468 (55%), Positives = 343/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+QL
Sbjct: 308 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVADDVDTQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M I +T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|300717468|ref|YP_003742271.1| exodeoxyribonuclease I [Erwinia billingiae Eb661]
gi|299063304|emb|CAX60424.1| Exodeoxyribonuclease I [Erwinia billingiae Eb661]
Length = 475
Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats.
Identities = 248/466 (53%), Positives = 338/466 (72%), Gaps = 1/466 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG+ +LDRPAQFAG+R D + I EVF+C+PADDYLP PEAV ITG
Sbjct: 8 PTFLFHDYETFGKSPSLDRPAQFAGIRTDMDFNIIGEPEVFYCQPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ EA F++RIH FS PNTCI+GYNN+RFDD +RN+ YRNFYD Y W+W
Sbjct: 68 ITPQLAKAKGISEAAFTKRIHALFSEPNTCIVGYNNVRFDDEVTRNLLYRNFYDPYGWAW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANG+ H NAHDA +DVY
Sbjct: 128 QHGNSRWDLLDVMRACYALRPEGIAWPENDDGLPSFRLEHLTKANGVSHENAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++EK+P+L+++L+ +RNKN++ LIDI M PLVH+SGMFGA R NT+ IAP
Sbjct: 188 ATIAMAKLVKEKQPRLYDFLFTHRNKNKITALIDIPQMKPLVHISGMFGAFRGNTSWIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP K+++I C+L+GD+ +LD+ L +RL+T +EL PVP+K +H+NKCP+
Sbjct: 248 LAWHPVNKNALITCDLAGDITPLLELDADTLRERLYTRREELGDNAPVPVKLMHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
+ P + + E ER GID KRCL+NL +LRQ +R++ A++ + + S DVD+QLY
Sbjct: 308 VAPANTLRPEDAERLGIDRKRCLDNLAILRQHPEVREKVVALFAEAEPFAGSSDVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M+ I +T PE L L+L F+D R+ +L FR+RARN+P TL E E+ WL
Sbjct: 368 DGFFSDADRNTMNIIQQTLPENLPALDLTFNDARIEKLLFRFRARNYPGTLDEAEQTRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+HR++ L R++ Y +L+ L +Y+GD GKE + L++Y+Q +
Sbjct: 428 QHRREALNPERVQSYVQELEMLFNQYEGDIGKEKDLKMLFQYVQNL 473
>gi|300898614|ref|ZP_07116941.1| exonuclease [Escherichia coli MS 198-1]
gi|300357710|gb|EFJ73580.1| exonuclease [Escherichia coli MS 198-1]
Length = 499
Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 33 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 92
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 93 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 152
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 153 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 212
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 213 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 272
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 273 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 332
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 333 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 392
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 393 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 452
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 453 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 499
>gi|323940907|gb|EGB37095.1| exonuclease [Escherichia coli E482]
Length = 474
Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +LSGD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|170019660|ref|YP_001724614.1| exonuclease I [Escherichia coli ATCC 8739]
gi|194436340|ref|ZP_03068442.1| exodeoxyribonuclease I [Escherichia coli 101-1]
gi|169754588|gb|ACA77287.1| Exodeoxyribonuclease I [Escherichia coli ATCC 8739]
gi|194425068|gb|EDX41053.1| exodeoxyribonuclease I [Escherichia coli 101-1]
Length = 475
Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|110642225|ref|YP_669955.1| exonuclease I [Escherichia coli 536]
gi|161486193|ref|NP_754426.2| exonuclease I [Escherichia coli CFT073]
gi|191170056|ref|ZP_03031610.1| exodeoxyribonuclease I [Escherichia coli F11]
gi|227887062|ref|ZP_04004867.1| exodeoxyribonuclease I [Escherichia coli 83972]
gi|110343817|gb|ABG70054.1| exodeoxyribonuclease I [Escherichia coli 536]
gi|190909572|gb|EDV69157.1| exodeoxyribonuclease I [Escherichia coli F11]
gi|227835412|gb|EEJ45878.1| exodeoxyribonuclease I [Escherichia coli 83972]
gi|294493683|gb|ADE92439.1| exodeoxyribonuclease I [Escherichia coli IHE3034]
gi|307554081|gb|ADN46856.1| C-terminal part of exodeoxyribonuclease I [Escherichia coli ABU
83972]
Length = 475
Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|260855993|ref|YP_003229884.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
gi|257754642|dbj|BAI26144.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
gi|323152400|gb|EFZ38688.1| exodeoxyribonuclease I [Escherichia coli EPECa14]
Length = 475
Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats.
Identities = 239/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+ G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|194431379|ref|ZP_03063671.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
gi|194420204|gb|EDX36281.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
gi|332091578|gb|EGI96659.1| exodeoxyribonuclease I [Shigella dysenteriae 155-74]
Length = 475
Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats.
Identities = 243/467 (52%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
E+R+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EYRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|188495966|ref|ZP_03003236.1| exodeoxyribonuclease I [Escherichia coli 53638]
gi|188491165|gb|EDU66268.1| exodeoxyribonuclease I [Escherichia coli 53638]
Length = 475
Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|323972839|gb|EGB68038.1| exonuclease [Escherichia coli TA007]
Length = 474
Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|187733588|ref|YP_001879865.1| exonuclease I [Shigella boydii CDC 3083-94]
gi|187430580|gb|ACD09854.1| exodeoxyribonuclease I [Shigella boydii CDC 3083-94]
gi|332343794|gb|AEE57128.1| exodeoxyribonuclease [Escherichia coli UMNK88]
Length = 475
Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|323961779|gb|EGB57380.1| exonuclease [Escherichia coli H489]
Length = 474
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|323168854|gb|EFZ54534.1| exodeoxyribonuclease I [Shigella sonnei 53G]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|323956180|gb|EGB51931.1| exonuclease [Escherichia coli H263]
Length = 474
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|300956271|ref|ZP_07168577.1| exonuclease [Escherichia coli MS 175-1]
gi|300316894|gb|EFJ66678.1| exonuclease [Escherichia coli MS 175-1]
Length = 491
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|237704470|ref|ZP_04534951.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
gi|300974061|ref|ZP_07172435.1| exonuclease [Escherichia coli MS 200-1]
gi|300986935|ref|ZP_07177911.1| exonuclease [Escherichia coli MS 45-1]
gi|26108790|gb|AAN80993.1|AE016762_246 Exodeoxyribonuclease I [Escherichia coli CFT073]
gi|226900836|gb|EEH87095.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
gi|300308958|gb|EFJ63478.1| exonuclease [Escherichia coli MS 200-1]
gi|300407821|gb|EFJ91359.1| exonuclease [Escherichia coli MS 45-1]
gi|315285605|gb|EFU45047.1| exonuclease [Escherichia coli MS 110-3]
gi|315295233|gb|EFU54568.1| exonuclease [Escherichia coli MS 153-1]
gi|324015752|gb|EGB84971.1| exonuclease [Escherichia coli MS 60-1]
Length = 491
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|15832067|ref|NP_310840.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
gi|168764097|ref|ZP_02789104.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
gi|217329517|ref|ZP_03445596.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
gi|291283248|ref|YP_003500066.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
gi|13362281|dbj|BAB36236.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
gi|189365832|gb|EDU84248.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
gi|217317285|gb|EEC25714.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
gi|226237418|dbj|BAH46940.1| exonuclease I [Escherichia coli O55:H7]
gi|290763121|gb|ADD57082.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
gi|320646788|gb|EFX15665.1| exonuclease I [Escherichia coli O157:H- str. 493-89]
gi|320652067|gb|EFX20410.1| exonuclease I [Escherichia coli O157:H- str. H 2687]
gi|320657429|gb|EFX25227.1| exonuclease I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663245|gb|EFX30550.1| exonuclease I [Escherichia coli O55:H7 str. USDA 5905]
gi|320668145|gb|EFX35014.1| exonuclease I [Escherichia coli O157:H7 str. LSU-61]
gi|326338368|gb|EGD62196.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1044]
gi|326347111|gb|EGD70844.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1125]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|193071491|ref|ZP_03052403.1| exodeoxyribonuclease I [Escherichia coli E110019]
gi|192955213|gb|EDV85704.1| exodeoxyribonuclease I [Escherichia coli E110019]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|218699399|ref|YP_002407028.1| exonuclease I [Escherichia coli IAI39]
gi|306814865|ref|ZP_07449027.1| exonuclease I [Escherichia coli NC101]
gi|218369385|emb|CAR17142.1| exonuclease I [Escherichia coli IAI39]
gi|305852259|gb|EFM52711.1| exonuclease I [Escherichia coli NC101]
gi|323187688|gb|EFZ72989.1| exodeoxyribonuclease I [Escherichia coli RN587/1]
gi|324008954|gb|EGB78173.1| exonuclease [Escherichia coli MS 57-2]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|307138678|ref|ZP_07498034.1| exonuclease I [Escherichia coli H736]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|218695636|ref|YP_002403303.1| exonuclease I [Escherichia coli 55989]
gi|218352368|emb|CAU98142.1| exonuclease I [Escherichia coli 55989]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|51595906|ref|YP_070097.1| exonuclease I [Yersinia pseudotuberculosis IP 32953]
gi|170024741|ref|YP_001721246.1| exonuclease I [Yersinia pseudotuberculosis YPIII]
gi|186894995|ref|YP_001872107.1| exonuclease I [Yersinia pseudotuberculosis PB1/+]
gi|51589188|emb|CAH20808.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 32953]
gi|169751275|gb|ACA68793.1| Exodeoxyribonuclease I [Yersinia pseudotuberculosis YPIII]
gi|186698021|gb|ACC88650.1| Exonuclease domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 476
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 258/468 (55%), Positives = 342/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITG
Sbjct: 8 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+QL
Sbjct: 308 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M I +T P+ L L+L F D RL L FR+RARN+P+TL+ E+Q W
Sbjct: 368 YNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNNSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|215487234|ref|YP_002329665.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
gi|312967244|ref|ZP_07781460.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
gi|215265306|emb|CAS09701.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
gi|312288052|gb|EFR15956.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|222033783|emb|CAP76524.1| exodeoxyribonuclease I [Escherichia coli LF82]
gi|281179112|dbj|BAI55442.1| exonuclease I [Escherichia coli SE15]
gi|312946641|gb|ADR27468.1| exonuclease I [Escherichia coli O83:H1 str. NRG 857C]
gi|320193300|gb|EFW67938.1| Exodeoxyribonuclease I [Escherichia coli WV_060327]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|191167705|ref|ZP_03029513.1| exodeoxyribonuclease I [Escherichia coli B7A]
gi|209919475|ref|YP_002293559.1| exonuclease I [Escherichia coli SE11]
gi|190902218|gb|EDV61959.1| exodeoxyribonuclease I [Escherichia coli B7A]
gi|209912734|dbj|BAG77808.1| exonuclease I [Escherichia coli SE11]
gi|320198703|gb|EFW73303.1| Exodeoxyribonuclease I [Escherichia coli EC4100B]
Length = 475
Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|300816639|ref|ZP_07096860.1| exonuclease [Escherichia coli MS 107-1]
gi|300530869|gb|EFK51931.1| exonuclease [Escherichia coli MS 107-1]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 239/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+ G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|323977819|gb|EGB72905.1| exonuclease [Escherichia coli TW10509]
Length = 474
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP PEAV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPEAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|74312553|ref|YP_310972.1| exonuclease I [Shigella sonnei Ss046]
gi|73856030|gb|AAZ88737.1| deoxyribophosphodiesterase [Shigella sonnei Ss046]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|331647660|ref|ZP_08348752.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M605]
gi|331043384|gb|EGI15522.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M605]
Length = 491
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|253773058|ref|YP_003035889.1| exonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162000|ref|YP_003045108.1| exonuclease I [Escherichia coli B str. REL606]
gi|300930717|ref|ZP_07146095.1| exonuclease [Escherichia coli MS 187-1]
gi|242377657|emb|CAQ32417.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli BL21(DE3)]
gi|253324102|gb|ACT28704.1| Exodeoxyribonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253973901|gb|ACT39572.1| exonuclease I [Escherichia coli B str. REL606]
gi|253978095|gb|ACT43765.1| exonuclease I [Escherichia coli BL21(DE3)]
gi|300461438|gb|EFK24931.1| exonuclease [Escherichia coli MS 187-1]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 475
>gi|331642634|ref|ZP_08343769.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H736]
gi|331039432|gb|EGI11652.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H736]
Length = 491
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|146312271|ref|YP_001177345.1| exonuclease I [Enterobacter sp. 638]
gi|145319147|gb|ABP61294.1| Exodeoxyribonuclease I subunit C [Enterobacter sp. 638]
Length = 476
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 243/469 (51%), Positives = 327/469 (69%), Gaps = 1/469 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ F+ +DYETFG +LDRP+QFA +R D + I EVF+CKPADDYLP P AV +
Sbjct: 8 VQPSFLFHDYETFGTSPSLDRPSQFAAIRTDADFTIIGEPEVFYCKPADDYLPQPGAVIV 67
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+A GV EAEF+RRIH F+VPNTC++GYNNIRFDD +RN+ YRNFYD Y W
Sbjct: 68 TGITPQEAREKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNVLYRNFYDPYAW 127
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SW N NSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA AD
Sbjct: 128 SWQNRNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMAD 187
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKLFEYL +RNK +L LID+ M PLVH+SGMFGA R NT+ +
Sbjct: 188 VYATIEMAKRVKTAQPKLFEYLLSHRNKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWV 247
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
AP+AWHP +++VI +L+GD+ +LDS L RL+T EL VP+K VH+NKC
Sbjct: 248 APLAWHPDNRNAVIMVDLAGDITPLLELDSDALRARLYTPKSELGEDAAVPVKLVHINKC 307
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L + + E ER GI+ ++CL+NL +LR +RD+ AI+ + S +VD+Q
Sbjct: 308 PVLAQANTLRPEDAERLGINRQQCLDNLKVLRDNPQVRDKVVAIFAEAEPFVPSDNVDAQ 367
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY+GFF+D DR M+ +L+T P L L++ F+D+R+ +L F YRARN+P TL E E++
Sbjct: 368 LYNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDESEQER 427
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WL+HR+ + T ++ Y +L+ L +Y+GD K+ L+ ALY+Y Q ++
Sbjct: 428 WLQHRRNVFTPEYLQCYAQELEMLFTQYEGDAEKQNLLKALYQYAQEIV 476
>gi|331658092|ref|ZP_08359054.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA206]
gi|331056340|gb|EGI28349.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA206]
Length = 474
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|301050038|ref|ZP_07196952.1| exonuclease [Escherichia coli MS 185-1]
gi|300298222|gb|EFJ54607.1| exonuclease [Escherichia coli MS 185-1]
Length = 491
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|256022296|ref|ZP_05436161.1| exonuclease I [Escherichia sp. 4_1_40B]
gi|301329562|ref|ZP_07222343.1| exonuclease [Escherichia coli MS 78-1]
gi|300844319|gb|EFK72079.1| exonuclease [Escherichia coli MS 78-1]
Length = 474
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|324119041|gb|EGC12930.1| exonuclease [Escherichia coli E1167]
Length = 474
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|193062859|ref|ZP_03043952.1| exodeoxyribonuclease I [Escherichia coli E22]
gi|194428755|ref|ZP_03061291.1| exodeoxyribonuclease I [Escherichia coli B171]
gi|260844621|ref|YP_003222399.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
gi|192931502|gb|EDV84103.1| exodeoxyribonuclease I [Escherichia coli E22]
gi|194413202|gb|EDX29488.1| exodeoxyribonuclease I [Escherichia coli B171]
gi|257759768|dbj|BAI31265.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
gi|323161928|gb|EFZ47802.1| exodeoxyribonuclease I [Escherichia coli E128010]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|300903879|ref|ZP_07121780.1| exonuclease [Escherichia coli MS 84-1]
gi|301307139|ref|ZP_07213168.1| exonuclease [Escherichia coli MS 124-1]
gi|300404137|gb|EFJ87675.1| exonuclease [Escherichia coli MS 84-1]
gi|300837654|gb|EFK65414.1| exonuclease [Escherichia coli MS 124-1]
gi|315253362|gb|EFU33330.1| exonuclease [Escherichia coli MS 85-1]
Length = 499
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 327/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 33 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 92
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 93 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 152
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 153 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 212
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 213 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 272
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 273 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 332
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R+ AI+ + + S +VD+QLY
Sbjct: 333 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLY 392
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 393 SGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 452
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 453 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|308187438|ref|YP_003931569.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
gi|308057948|gb|ADO10120.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 246/469 (52%), Positives = 332/469 (70%), Gaps = 1/469 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ F+ +DYETFG + DRPAQFAG+R D ++ + EVF+C+P DDYLP PEAV I
Sbjct: 6 VQPTFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMI 65
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A+ GV+EAEF+ RIH+ F+ TC++GYNN+RFDD +RNIFYRNFYD Y W
Sbjct: 66 TGITPQIAMSRGVIEAEFAERIHKLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGW 125
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+W NGNSRWDLLDVMRA YA PDGI WP ++G SF+L+ L ANG+ H NAHDA +D
Sbjct: 126 AWQNGNSRWDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGVAHENAHDAMSD 185
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYATLA+ L++EK+PKLF++L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ I
Sbjct: 186 VYATLAMAKLVKEKQPKLFDFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWI 245
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
P+AWHP ++++I +L+GDM LD+ L +RL+T ++L L VP+K VH+NKC
Sbjct: 246 VPLAWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLVHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L P + E R GID + CL NL LLRQQ ++R++ ++ + + S DVD+Q
Sbjct: 306 PVLAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSDDVDTQ 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q
Sbjct: 366 LYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WL+HR+++L R++ + +L+ L+ ++ D K G + ALY Y Q ++
Sbjct: 426 WLQHRREVLNSDRVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELV 474
>gi|16129952|ref|NP_416515.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|89108831|ref|AP_002611.1| exonuclease I [Escherichia coli str. K-12 substr. W3110]
gi|170081641|ref|YP_001730961.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
gi|238901201|ref|YP_002926997.1| exonuclease I [Escherichia coli BW2952]
gi|462029|sp|P04995|EX1_ECOLI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|405954|gb|AAA16417.1| exonuclease I [Escherichia coli]
gi|1736685|dbj|BAA15839.1| exonuclease I [Escherichia coli str. K12 substr. W3110]
gi|1788321|gb|AAC75072.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|89330228|emb|CAJ84171.1| exodeoxyribonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|169889476|gb|ACB03183.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
gi|238861050|gb|ACR63048.1| exonuclease I [Escherichia coli BW2952]
gi|260448888|gb|ACX39310.1| Exodeoxyribonuclease I [Escherichia coli DH1]
gi|315136644|dbj|BAJ43803.1| exonuclease I [Escherichia coli DH1]
gi|315618014|gb|EFU98606.1| exodeoxyribonuclease I [Escherichia coli 3431]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|312172834|emb|CBX81090.1| exodeoxyribonuclease I [Erwinia amylovora ATCC BAA-2158]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 339/467 (72%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITG
Sbjct: 8 PTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A + G+ EAEF+ RIH FS NTC++GYNN+RFDD SRN+FYRNFYD Y WSW
Sbjct: 68 ITPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVY
Sbjct: 128 QHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R N + IAP
Sbjct: 188 ATIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I C+L DM +LD+ L RL+T DEL G PVP+K VH+NKCP+
Sbjct: 248 LAWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
+ P + + E ER GID +RCL+NL LLRQ +R++ ++ + P + S DVDSQ+Y
Sbjct: 308 VAPANTLRPEDAERIGIDRQRCLDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQIY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL +KE+Q WL
Sbjct: 368 NGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++M + R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++
Sbjct: 428 QHRRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELV 474
>gi|315296392|gb|EFU55692.1| exonuclease [Escherichia coli MS 16-3]
Length = 474
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|320641419|gb|EFX10863.1| exonuclease I [Escherichia coli O157:H7 str. G5101]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|218558892|ref|YP_002391805.1| exonuclease I [Escherichia coli S88]
gi|218365661|emb|CAR03398.1| exonuclease I [Escherichia coli S88]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGIHWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|256017814|ref|ZP_05431679.1| exonuclease I [Shigella sp. D9]
Length = 475
Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ + P
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVVP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|327253143|gb|EGE64797.1| exodeoxyribonuclease I [Escherichia coli STEC_7v]
Length = 475
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|300926502|ref|ZP_07142295.1| exonuclease [Escherichia coli MS 182-1]
gi|300417463|gb|EFK00774.1| exonuclease [Escherichia coli MS 182-1]
Length = 499
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 33 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 92
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 93 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 152
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 153 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 212
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 213 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 272
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 273 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 332
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 333 LAQANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 392
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 393 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 452
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 453 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 499
>gi|227111961|ref|ZP_03825617.1| exonuclease I [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 475
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 257/468 (54%), Positives = 332/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLP+PEAV ITG
Sbjct: 7 PTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPEAVMITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 67 ITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVY
Sbjct: 127 QNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGISHEQAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + P
Sbjct: 187 ATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKCP
Sbjct: 247 LAWHPDNRNAVIMCDLAGDMTPLLELDSAALRERLYTRRDALEADQSAVPLKLVHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + + E ER GID +RCL+NL LLR ++R++ ++ + P ++S DVD +L
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNLALLRSNASVREKVVELFAEAPAFTASDDVDLRL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF DR M I TAP+ L L+L F+D RL L FRYRARNFP TL ++E+Q W
Sbjct: 367 YDGFFGYADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR+ + T R+++Y ++L +L +++ D+ K + ALY Y Q ++
Sbjct: 427 LQHRRAVFTPERLQDYLSELSNLYQQHEDDKEKMAQLKALYAYAQELV 474
>gi|323936909|gb|EGB33192.1| exonuclease [Escherichia coli E1520]
Length = 474
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFAHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|330911851|gb|EGH40361.1| exodeoxyribonuclease 1 [Escherichia coli AA86]
Length = 475
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|309797270|ref|ZP_07691665.1| exonuclease [Escherichia coli MS 145-7]
gi|308119145|gb|EFO56407.1| exonuclease [Escherichia coli MS 145-7]
Length = 475
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|323183799|gb|EFZ69190.1| exodeoxyribonuclease I [Escherichia coli 1357]
gi|332092391|gb|EGI97464.1| exodeoxyribonuclease I [Shigella boydii 5216-82]
Length = 475
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|293410372|ref|ZP_06653948.1| sbcB [Escherichia coli B354]
gi|291470840|gb|EFF13324.1| sbcB [Escherichia coli B354]
Length = 475
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|292488688|ref|YP_003531575.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
gi|292899843|ref|YP_003539212.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
gi|291199691|emb|CBJ46811.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
gi|291554122|emb|CBA21287.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
Length = 475
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 338/467 (72%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG+ +LDRPAQFA +R D + I EVF+C+PADDYLP PEAV ITG
Sbjct: 8 PTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A + G+ EAEF+ RIH FS NTC++GYNN+RFDD SRN+FYRNFYD Y WSW
Sbjct: 68 ITPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDVMRA YA PDGI WP DDG SF+L+ L ANG+ H NAHDA +DVY
Sbjct: 128 QHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++EK+P+L+++L+ +RNK ++ LIDI M PLVH+SGMFGA+R N + IAP
Sbjct: 188 ATIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I C+L DM +LD+ L RL+T DEL G PVP+K VH+NKCP+
Sbjct: 248 LAWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
+ P + + E ER GID +RC +NL LLRQ +R++ ++ + P + S DVDSQ+Y
Sbjct: 308 VAPANTLRPEDAERIGIDRQRCRDNLALLRQHPEVREKVVTLFAEAPPFTPSDDVDSQIY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M+ + +TA E L L+L F+D R+ +L FR+RARNFP TL +KE+Q WL
Sbjct: 368 NGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDKEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++M + R++ Y +L+ L +Y+GD+ ++ + AL+ Y+Q ++
Sbjct: 428 QHRRQMFSPERVQGYVQELEMLFNQYEGDQARQEQLKALFAYMQELV 474
>gi|323968146|gb|EGB63555.1| exonuclease [Escherichia coli M863]
Length = 474
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|323948385|gb|EGB44370.1| exonuclease [Escherichia coli H120]
Length = 474
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|300936684|ref|ZP_07151588.1| exonuclease [Escherichia coli MS 21-1]
gi|300458265|gb|EFK21758.1| exonuclease [Escherichia coli MS 21-1]
Length = 474
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|332278835|ref|ZP_08391248.1| exonuclease I [Shigella sp. D9]
gi|332101187|gb|EGJ04533.1| exonuclease I [Shigella sp. D9]
Length = 491
Score = 738 bits (1907), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ + P
Sbjct: 205 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVVP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|21959485|gb|AAM86164.1|AE013862_9 exonuclease I [Yersinia pestis KIM 10]
Length = 497
Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats.
Identities = 256/468 (54%), Positives = 342/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITG
Sbjct: 29 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITG 88
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 89 ITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 148
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVY
Sbjct: 149 QGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVY 208
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 209 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 268
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP
Sbjct: 269 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCP 328
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+QL
Sbjct: 329 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQL 388
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 389 YNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRW 448
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 449 LQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 496
>gi|323172599|gb|EFZ58233.1| exodeoxyribonuclease I [Escherichia coli LT-68]
Length = 475
Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFMPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|322832303|ref|YP_004212330.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
gi|321167504|gb|ADW73203.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
Length = 475
Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats.
Identities = 253/468 (54%), Positives = 340/468 (72%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYETFG++ ALDRPAQFAGVR D + IE V +C+P+DDYLP+PEAV ITG
Sbjct: 7 KTFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPEAVMITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL G++EAEF+ +IH+ FSVP TCI+GYNNIRFDD SRNI YRNF+D Y +SW
Sbjct: 67 ITPQVALERGLIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFHDPYAYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 127 QNGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHDAMADVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF +L ++R+K++L LIDI M PLVHVSGMFGA+R NTA +AP
Sbjct: 187 ATIAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGNTAWVAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM DL+ ++ +RL++ + L+ G P+P+K VH+NKCP
Sbjct: 247 LAWHPENKNAVIMCDLAGDMSTLLDLNPDEMRERLYSRREALQAGQSPLPVKLVHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ ER GID +RCLENL LLRQ +R++ ++ + + S DVD++L
Sbjct: 307 VLAPAKTLLPENAERLGIDRQRCLENLQLLRQNPQVREKVVTMFAEAEPFTPSDDVDARL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D DR M I+ T PE L L+L F+D R+ L FR+RARN+P TL++ E++ W
Sbjct: 367 YDGFFSDADRAAMRIIVETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTDAEQKRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+ HR++ LT R++ Y +L+SL ++GD K L+ AL+EY + ++
Sbjct: 427 MLHRQEKLTDERVQAYILELESLYNLHEGDVEKMALLKALFEYGKKLV 474
>gi|238749982|ref|ZP_04611486.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
gi|238711911|gb|EEQ04125.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
Length = 476
Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats.
Identities = 260/468 (55%), Positives = 341/468 (72%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCTPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P GI WP +DG SFKL+ L ANG+EH+ AHDA +DV+
Sbjct: 128 QGGNSRWDLLDVMRACYALRPAGIVWPENEDGLPSFKLEHLTKANGVEHLQAHDAMSDVH 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI NMTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIANMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP
Sbjct: 248 LAWHPDNKNAVIMCDLAGDMSPLLELDSDALRERLYTRRDKLNAQEAAVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ ER GID +RCLENL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLAENAERLGIDRQRCLENLQLLRQNPQIREKVVALFAEAEPFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
LEHR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LEHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLV 475
>gi|260868731|ref|YP_003235133.1| exonuclease I [Escherichia coli O111:H- str. 11128]
gi|257765087|dbj|BAI36582.1| exonuclease I [Escherichia coli O111:H- str. 11128]
gi|323177088|gb|EFZ62678.1| exodeoxyribonuclease I [Escherichia coli 1180]
Length = 474
Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|162419714|ref|YP_001607449.1| exonuclease I [Yersinia pestis Angola]
gi|166009382|ref|ZP_02230280.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211647|ref|ZP_02237682.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167424322|ref|ZP_02316075.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|270486761|ref|ZP_06203835.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
gi|294503532|ref|YP_003567594.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
gi|162352529|gb|ABX86477.1| exodeoxyribonuclease I [Yersinia pestis Angola]
gi|165991937|gb|EDR44238.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207418|gb|EDR51898.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167057171|gb|EDR66934.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|262361575|gb|ACY58296.1| exodeoxyribonuclease I [Yersinia pestis D106004]
gi|262365685|gb|ACY62242.1| exodeoxyribonuclease I [Yersinia pestis D182038]
gi|270335265|gb|EFA46042.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
gi|294353991|gb|ADE64332.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
Length = 487
Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats.
Identities = 256/468 (54%), Positives = 342/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITG
Sbjct: 19 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITG 78
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 79 ITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 138
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVY
Sbjct: 139 QGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVY 198
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 199 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 258
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP
Sbjct: 259 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCP 318
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+QL
Sbjct: 319 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQL 378
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 379 YNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRW 438
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 439 LQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 486
>gi|307312423|ref|ZP_07592057.1| Exodeoxyribonuclease I [Escherichia coli W]
gi|306907594|gb|EFN38097.1| Exodeoxyribonuclease I [Escherichia coli W]
gi|315061286|gb|ADT75613.1| exonuclease I [Escherichia coli W]
gi|323378134|gb|ADX50402.1| Exodeoxyribonuclease I [Escherichia coli KO11]
Length = 475
Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ + +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|320177928|gb|EFW52912.1| Exodeoxyribonuclease I [Shigella boydii ATCC 9905]
Length = 475
Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L + L+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLREHLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
E+R+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EYRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|168751661|ref|ZP_02776683.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
gi|168757555|ref|ZP_02782562.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
gi|168769762|ref|ZP_02794769.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
gi|168775542|ref|ZP_02800549.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
gi|168782293|ref|ZP_02807300.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
gi|168788678|ref|ZP_02813685.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
gi|168799108|ref|ZP_02824115.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
gi|195939352|ref|ZP_03084734.1| exonuclease I [Escherichia coli O157:H7 str. EC4024]
gi|208807658|ref|ZP_03249995.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
gi|208817101|ref|ZP_03258193.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
gi|208818353|ref|ZP_03258673.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
gi|209398513|ref|YP_002271254.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
gi|254793793|ref|YP_003078630.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
gi|261225144|ref|ZP_05939425.1| exonuclease I [Escherichia coli O157:H7 str. FRIK2000]
gi|261257512|ref|ZP_05950045.1| exonuclease I [Escherichia coli O157:H7 str. FRIK966]
gi|187768997|gb|EDU32841.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
gi|188014326|gb|EDU52448.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
gi|189000162|gb|EDU69148.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
gi|189355495|gb|EDU73914.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
gi|189361232|gb|EDU79651.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
gi|189371612|gb|EDU90028.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
gi|189378492|gb|EDU96908.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
gi|208727459|gb|EDZ77060.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
gi|208730720|gb|EDZ79410.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
gi|208738476|gb|EDZ86158.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
gi|209159913|gb|ACI37346.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
gi|254593193|gb|ACT72554.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
gi|320191824|gb|EFW66472.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC1212]
Length = 474
Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|320175604|gb|EFW50697.1| Exodeoxyribonuclease I [Shigella dysenteriae CDC 74-1112]
Length = 475
Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|218705553|ref|YP_002413072.1| exonuclease I [Escherichia coli UMN026]
gi|293405493|ref|ZP_06649485.1| sbcB [Escherichia coli FVEC1412]
gi|298381181|ref|ZP_06990780.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
gi|218432650|emb|CAR13545.1| exonuclease I [Escherichia coli UMN026]
gi|291427701|gb|EFF00728.1| sbcB [Escherichia coli FVEC1412]
gi|298278623|gb|EFI20137.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
Length = 475
Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 475
>gi|331668711|ref|ZP_08369559.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA271]
gi|331063905|gb|EGI35816.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA271]
Length = 474
Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ + +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|170769782|ref|ZP_02904235.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
gi|170121396|gb|EDS90327.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
Length = 475
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 331/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I E+F+CKPADDYLP P AV ITG
Sbjct: 9 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEIFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VPNTCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFATRIHSLFTVPNTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAIAKLVKTRQPRLFDYLYTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQSYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|157155858|ref|YP_001463362.1| exonuclease I [Escherichia coli E24377A]
gi|157077888|gb|ABV17596.1| exodeoxyribonuclease I [Escherichia coli E24377A]
Length = 475
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|312973748|ref|ZP_07787920.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
gi|310332343|gb|EFP99578.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
Length = 475
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGM GA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|323951765|gb|EGB47639.1| exonuclease [Escherichia coli H252]
Length = 474
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 474
>gi|300947322|ref|ZP_07161523.1| exonuclease [Escherichia coli MS 116-1]
gi|300453074|gb|EFK16694.1| exonuclease [Escherichia coli MS 116-1]
Length = 475
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 327/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E R GI+ + CL+NL +LR+ +R+ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDANRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|117624215|ref|YP_853128.1| exonuclease I [Escherichia coli APEC O1]
gi|115513339|gb|ABJ01414.1| exonuclease I [Escherichia coli APEC O1]
Length = 491
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV 491
>gi|331683697|ref|ZP_08384293.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H299]
gi|331078649|gb|EGI49851.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H299]
Length = 474
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LFEYL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 474
>gi|238757180|ref|ZP_04618367.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
gi|238704558|gb|EEP97088.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
Length = 476
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 256/469 (54%), Positives = 342/469 (72%), Gaps = 2/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV IT
Sbjct: 7 SPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +S
Sbjct: 67 GITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DV
Sbjct: 127 WQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +A
Sbjct: 187 YATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKC 300
P+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKC
Sbjct: 247 PLAWHPENKNAVIMCDLAGDMSPLLELDSNTLRERLYTRRDKLGAQDAAVPLKLVHINKC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L P E+ ER GID +RCL+NL LLRQ +R++ A++ + + S DVD+Q
Sbjct: 307 PVLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQ 366
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL++ E+Q
Sbjct: 367 LYNGFFSDADRATMKIILQTEPKNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQR 426
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WLEHR++ L +++ Y +L+ +Y+ D+ K L+ AL++Y + ++
Sbjct: 427 WLEHRREALNAEKVQAYMLQLEQFYNQYEDDKEKLALLKALFDYARDLV 475
>gi|218690073|ref|YP_002398285.1| exonuclease I [Escherichia coli ED1a]
gi|218427637|emb|CAR08548.2| exonuclease I [Escherichia coli ED1a]
Length = 475
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 239/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|301648514|ref|ZP_07248238.1| exonuclease [Escherichia coli MS 146-1]
gi|301073417|gb|EFK88223.1| exonuclease [Escherichia coli MS 146-1]
Length = 491
Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIALAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTVKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|293446370|ref|ZP_06662792.1| exodeoxyribonuclease I [Escherichia coli B088]
gi|291323200|gb|EFE62628.1| exodeoxyribonuclease I [Escherichia coli B088]
Length = 475
Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQCWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|238793487|ref|ZP_04637112.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
gi|238727260|gb|EEQ18789.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
Length = 476
Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats.
Identities = 260/468 (55%), Positives = 341/468 (72%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFSRQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVH 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM LDS L +RL+T D+L VP+K VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLALDSDTLRERLYTRRDKLNTQDAAVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ ER GID +RCL+NL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T P+ L L+L F D RL LFFR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLETLFFRFRARNYPNTLTDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LAHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYARGLV 475
>gi|331653435|ref|ZP_08354436.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M718]
gi|331048284|gb|EGI20360.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M718]
Length = 491
Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQIFTSEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|331673547|ref|ZP_08374310.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA280]
gi|331068820|gb|EGI40212.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA280]
Length = 491
Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|170682338|ref|YP_001743128.1| exonuclease I [Escherichia coli SMS-3-5]
gi|301019172|ref|ZP_07183372.1| exonuclease [Escherichia coli MS 69-1]
gi|170520056|gb|ACB18234.1| exodeoxyribonuclease I [Escherichia coli SMS-3-5]
gi|300399365|gb|EFJ82903.1| exonuclease [Escherichia coli MS 69-1]
Length = 475
Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E ER GI + CL+NL +LR+ +RD+ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDAERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV 475
>gi|253688149|ref|YP_003017339.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754727|gb|ACT12803.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 475
Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats.
Identities = 256/468 (54%), Positives = 332/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P+DDYLP+PEAV ITG
Sbjct: 7 PTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 67 ITPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLD +RA YA P+GI WP +DG SF+L+ L ANGI H AHDA +DVY
Sbjct: 127 QNGNSRWDLLDALRACYALRPEGIIWPENNDGLPSFRLEHLTKANGISHEQAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + P
Sbjct: 187 ATIAMAKLFKQAQPKLFEYLFTLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKCP
Sbjct: 247 LAWHPDNRNAVIMCDLAGDMTPLLELDSETLRERLYTRRDALEPDQSAVPLKLVHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + + E ER ID +RCL+NL LLR T++R++ ++ + P ++S DVD +L
Sbjct: 307 VLAPANTLRPEDAERLSIDRQRCLDNLALLRNNTSVREKVVELFAEAPAFAASDDVDLRL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF D DR M I TAP+ L L+L F+D RL L FRYRARNFP TL ++E+Q W
Sbjct: 367 YDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDDREQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR+ + T R+++Y ++L +L ++ D+ K + ALY Y Q ++
Sbjct: 427 LQHRRAVFTPERLQDYLSELSNLYQLHEDDKEKMAQLKALYAYAQELV 474
>gi|45441270|ref|NP_992809.1| exonuclease I [Yersinia pestis biovar Microtus str. 91001]
gi|108806850|ref|YP_650766.1| exonuclease I [Yersinia pestis Antiqua]
gi|149366477|ref|ZP_01888511.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
gi|161484780|ref|NP_669913.2| exonuclease I [Yersinia pestis KIM 10]
gi|165924676|ref|ZP_02220508.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939554|ref|ZP_02228099.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
IP275]
gi|167400240|ref|ZP_02305753.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421764|ref|ZP_02313517.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167470369|ref|ZP_02335073.1| exodeoxyribonuclease I [Yersinia pestis FV-1]
gi|218928697|ref|YP_002346572.1| exonuclease I [Yersinia pestis CO92]
gi|229841541|ref|ZP_04461700.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843652|ref|ZP_04463795.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
gi|229894245|ref|ZP_04509428.1| exonuclease I [Yersinia pestis Pestoides A]
gi|45436130|gb|AAS61686.1| exodeoxyribonuclease I [Yersinia pestis biovar Microtus str. 91001]
gi|108778763|gb|ABG12821.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Antiqua]
gi|115347308|emb|CAL20203.1| exodeoxyribonuclease I [Yersinia pestis CO92]
gi|149290851|gb|EDM40926.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
gi|165912470|gb|EDR31102.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
IP275]
gi|165923736|gb|EDR40868.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166960249|gb|EDR56270.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050189|gb|EDR61597.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229689260|gb|EEO81323.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
gi|229697907|gb|EEO87954.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229703643|gb|EEO90659.1| exonuclease I [Yersinia pestis Pestoides A]
gi|320015573|gb|ADV99144.1| exonuclease I [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 476
Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats.
Identities = 256/468 (54%), Positives = 342/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITG
Sbjct: 8 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+QL
Sbjct: 308 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|304397387|ref|ZP_07379265.1| Exodeoxyribonuclease I [Pantoea sp. aB]
gi|304355005|gb|EFM19374.1| Exodeoxyribonuclease I [Pantoea sp. aB]
Length = 475
Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats.
Identities = 246/469 (52%), Positives = 332/469 (70%), Gaps = 1/469 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ F+ +DYETFG + DRPAQFAG+R D ++ + +VF+C+P DDYLP PEAV I
Sbjct: 6 VQPTFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPDVFYCRPPDDYLPQPEAVMI 65
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A+ G++EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y W
Sbjct: 66 TGITPQIAMSRGMIEAEFAERIHTLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGW 125
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+W NGNSRWDLLDVMRA YA PDGI WP ++G SF+L+ L ANG+ H NAHDA +D
Sbjct: 126 AWQNGNSRWDLLDVMRACYALRPDGIIWPENEEGFPSFRLEHLTKANGVAHENAHDAMSD 185
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYATLA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+ I
Sbjct: 186 VYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWI 245
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
P+AWHP ++++I +L+GDM LD+ L +RL+T ++L L PVP+K VH+NKC
Sbjct: 246 VPLAWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPPVPVKLVHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L P + E R GID + CL NL LLRQQ ++R++ ++ + + S DVD+Q
Sbjct: 306 PVLAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSDDVDTQ 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+Q
Sbjct: 366 LYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WL+HR+++L R++ + +L+ L+ ++ D K G + ALY Y Q ++
Sbjct: 426 WLQHRREVLNAERVQAFMQELEGLANLHEADAEKVGQLKALYLYAQELV 474
>gi|162138417|ref|YP_541284.2| exonuclease I [Escherichia coli UTI89]
gi|307626441|gb|ADN70745.1| exonuclease I [Escherichia coli UM146]
Length = 475
Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVS MFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|12084680|pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
Is Achieved
gi|166007143|pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom
Resolution
gi|193885301|pdb|3C94|A Chain A, ExoiSSB-Ct Complex
gi|193885304|pdb|3C95|A Chain A, Exonuclease I (Apo)
gi|284055587|pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With
Inhibitor Bcbp
gi|284055600|pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH
Inhibitor Cfam
Length = 482
Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEIV 475
>gi|293415305|ref|ZP_06657948.1| exodeoxyribonuclease I [Escherichia coli B185]
gi|291432953|gb|EFF05932.1| exodeoxyribonuclease I [Escherichia coli B185]
Length = 475
Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDR AQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRSAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|89330230|emb|CAJ84172.1| exodeoxyribonuclease I [Escherichia coli K-12]
Length = 475
Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHD ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDVMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 475
>gi|91072872|gb|ABE07753.1| exodeoxyribonuclease I [Escherichia coli UTI89]
Length = 491
Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVS MFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S++VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 491
>gi|284922012|emb|CBG35090.1| exodeoxyribonuclease I [Escherichia coli 042]
Length = 491
Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGKPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 205 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 491
>gi|168236215|ref|ZP_02661273.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194733944|ref|YP_002115153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194709446|gb|ACF88667.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197290623|gb|EDY29978.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 476
Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats.
Identities = 249/469 (53%), Positives = 336/469 (71%), Gaps = 1/469 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV I
Sbjct: 8 VQNTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLI 67
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y W
Sbjct: 68 TGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAW 127
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA AD
Sbjct: 128 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMAD 187
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +
Sbjct: 188 VYATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWV 247
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKC
Sbjct: 248 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKC 307
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+Q
Sbjct: 308 PVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQ 367
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q
Sbjct: 368 LYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQR 427
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WLEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 428 WLEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|108812583|ref|YP_648350.1| exonuclease I [Yersinia pestis Nepal516]
gi|229902976|ref|ZP_04518092.1| exonuclease I [Yersinia pestis Nepal516]
gi|108776231|gb|ABG18750.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Nepal516]
gi|229679886|gb|EEO75986.1| exonuclease I [Yersinia pestis Nepal516]
Length = 476
Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats.
Identities = 256/468 (54%), Positives = 342/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITG
Sbjct: 8 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+QL
Sbjct: 308 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLTLLKALFEYAKGLV 475
>gi|218554573|ref|YP_002387486.1| exonuclease I [Escherichia coli IAI1]
gi|218361341|emb|CAQ98929.1| exonuclease I [Escherichia coli IAI1]
Length = 475
Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats.
Identities = 238/467 (50%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKP DDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y ++ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV 475
>gi|157267360|ref|NP_288516.2| exonuclease I [Escherichia coli O157:H7 str. EDL933]
gi|169822936|gb|AAG57070.2|AE005426_12 exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
[Escherichia coli O157:H7 str. EDL933]
Length = 475
Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++Q L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYAEEIQMLAQQYAXDKEKVALLKALWQYAEXJV 475
>gi|322613666|gb|EFY10606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620237|gb|EFY17106.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623283|gb|EFY20124.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322630488|gb|EFY27257.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632835|gb|EFY29580.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638832|gb|EFY35526.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640283|gb|EFY36945.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322647148|gb|EFY43647.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648974|gb|EFY45417.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653880|gb|EFY50204.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660987|gb|EFY57216.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322663072|gb|EFY59279.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322668517|gb|EFY64672.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322673348|gb|EFY69451.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322679134|gb|EFY75188.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322683229|gb|EFY79244.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322685901|gb|EFY81891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195188|gb|EFZ80369.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198756|gb|EFZ83856.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323202400|gb|EFZ87443.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323209215|gb|EFZ94151.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323213844|gb|EFZ98621.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216128|gb|EGA00858.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223218|gb|EGA07560.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323223733|gb|EGA08040.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323231339|gb|EGA15453.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323232569|gb|EGA16666.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323240988|gb|EGA25028.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323245593|gb|EGA29588.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323247623|gb|EGA31572.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251066|gb|EGA34940.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257464|gb|EGA41155.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323263357|gb|EGA46891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323266324|gb|EGA49813.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271468|gb|EGA54890.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
Length = 476
Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 335/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L L VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDLAAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|204929131|ref|ZP_03220274.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|204321675|gb|EDZ06874.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
Length = 476
Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 335/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAETEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|332161149|ref|YP_004297726.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325665379|gb|ADZ42023.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 476
Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats.
Identities = 255/468 (54%), Positives = 343/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
LEHR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y + ++
Sbjct: 428 LEHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLV 475
>gi|145598704|ref|YP_001162780.1| exonuclease I [Yersinia pestis Pestoides F]
gi|145210400|gb|ABP39807.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Pestoides F]
Length = 476
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 256/468 (54%), Positives = 342/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + +E V +CKPADDYLP PEAV ITG
Sbjct: 8 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEFSR+IHQ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+EH+ AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L+ +PIK VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + + DVD+QL
Sbjct: 308 VLAPAKTLLPENSDRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR + I +T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLNDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR++ L+ R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|325497751|gb|EGC95610.1| exonuclease I [Escherichia fergusonii ECD227]
Length = 475
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 244/466 (52%), Positives = 329/466 (70%), Gaps = 1/466 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITGI
Sbjct: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 130 HDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+
Sbjct: 190 TIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L
Sbjct: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVL 309
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
+ + E ER GID + CL+NL +LR+ +RD+ AI+ + + S +VD+QLY+
Sbjct: 310 AQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYN 369
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLE
Sbjct: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWLE 429
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 430 HRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 475
>gi|218549424|ref|YP_002383215.1| exonuclease I [Escherichia fergusonii ATCC 35469]
gi|218356965|emb|CAQ89597.1| exonuclease I [Escherichia fergusonii ATCC 35469]
Length = 474
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 244/467 (52%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 428 EHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|331677916|ref|ZP_08378591.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H591]
gi|331074376|gb|EGI45696.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H591]
Length = 491
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 239/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 25 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 85 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 145 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 204
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVH+SGMFGA R NT+ +AP
Sbjct: 205 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWRGNTSWVAP 264
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ L VP+K VH+NKCP+
Sbjct: 265 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTNLGDNAAVPVKLVHINKCPV 324
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + + +VD+QLY
Sbjct: 325 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLY 384
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 385 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 444
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 445 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 491
>gi|238784349|ref|ZP_04628360.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
gi|238714777|gb|EEQ06778.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
Length = 476
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 255/468 (54%), Positives = 337/468 (72%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTRANGVEHLHAHDAMSDVH 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQVQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDRLSAQDAAVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ ER GID + CL NL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLPENAERLGIDRQHCLRNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T P+ L L+L F D RL L FR+RARN+P+TL+ E++ W
Sbjct: 368 YNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTYSEQKRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
LEHR++ L +++Y +L+ +Y+ D+ K L+ AL++Y + ++
Sbjct: 428 LEHRREALNPELVQDYVLQLEQFYNQYEDDKEKLALLKALFDYAKGLV 475
>gi|62180647|ref|YP_217064.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|167551009|ref|ZP_02344764.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|168259635|ref|ZP_02681608.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168818244|ref|ZP_02830244.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194443671|ref|YP_002041334.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|197247769|ref|YP_002147025.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|198243454|ref|YP_002216153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|224583437|ref|YP_002637235.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238913451|ref|ZP_04657288.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|62128280|gb|AAX65983.1| exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194402334|gb|ACF62556.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|197211472|gb|ACH48869.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197937970|gb|ACH75303.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|205323967|gb|EDZ11806.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205344805|gb|EDZ31569.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205351000|gb|EDZ37631.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|224467964|gb|ACN45794.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322715118|gb|EFZ06689.1| Exonuclease, RNase T and DNA polymerase III [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|326623899|gb|EGE30244.1| LPS-assembly lipoprotein RlpB [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 476
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 335/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|324114057|gb|EGC08030.1| exonuclease [Escherichia fergusonii B253]
Length = 474
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 244/467 (52%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E ER GID + CL+NL +LR+ +RD+ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDNEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T + ++ Y ++Q L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 428 EHRRQVFTPAFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAQEIV 474
>gi|318605038|emb|CBY26536.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 476
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 255/468 (54%), Positives = 343/468 (73%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDITDMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
LEHR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y + ++
Sbjct: 428 LEHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLV 475
>gi|242239639|ref|YP_002987820.1| exonuclease I [Dickeya dadantii Ech703]
gi|242131696|gb|ACS85998.1| Exodeoxyribonuclease I [Dickeya dadantii Ech703]
Length = 476
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 251/468 (53%), Positives = 325/468 (69%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F I+DYETFG+ A DRPAQFAG+R D+ + I V +C+PADDYLPDPEAV ITG
Sbjct: 8 STFFIHDYETFGKHPAKDRPAQFAGIRTDQDFNVIGEPVVIYCQPADDYLPDPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E +F+R+IH FS P TCI+GYNNIRFDD SRN+FYRNF D Y +SW
Sbjct: 68 ITPQLASSKGIGEVDFARQIHDAFSTPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLD +RA YA P+GI WP ++G SF+L+ L ANGIEH +AHDA +DVY
Sbjct: 128 QNGNSRWDLLDALRACYALRPEGIVWPENEEGFPSFRLEHLTRANGIEHEHAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L ++ +P+LF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P
Sbjct: 188 ATIAMARLFKQTQPRLFDYLYQLRNKNKVNALIDIAEMKPLVHVSGMFGAARGNTSWIVP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GD+ +L + L RL+T D L + PVPIK VH+NKCP
Sbjct: 248 LAWHPENRNAVIVCDLAGDIDPLLNLSADALRTRLYTRRDLLGENESPVPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + E R G+D +RCL+NL LLRQ +R++ A++ P + DVD QL
Sbjct: 308 VLAPAATLRPEDAARLGVDRQRCLDNLKLLRQHPLVREKVVALFADAPAFEPAADVDLQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF D DR M I TAP+ L L L F+DRR+ EL FRYRARNFP TL ++E+Q W
Sbjct: 368 YDGFFGDADRAAMTIIRETAPQHLPALKLQFADRRMEELLFRYRARNFPGTLDDQEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR+++ T R++ Y L+SL + DE K L+ AL+ Y Q ++
Sbjct: 428 LRHRREIFTPERLQSYSETLESLYQIHADDEKKIALLKALFTYAQQLV 475
>gi|161613258|ref|YP_001587223.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|161362622|gb|ABX66390.1| hypothetical protein SPAB_00968 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 476
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 335/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y ++ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAENKTKLGLLKSLWQYATEIV 476
>gi|123442974|ref|YP_001006949.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122089935|emb|CAL12792.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 476
Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats.
Identities = 254/468 (54%), Positives = 341/468 (72%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP ++G SFKL+ L ANG+EH +AHDA +DVY
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ +++ +P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ +R GID +RCL+NL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q W
Sbjct: 368 YNGFFSDADRATMKIILQTKAQNLPALDLTFQDPRLEVLLFRFRARNYPNTLTDSEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR++ L ++++Y +L++L +Y+ D+ K L+ AL++Y + ++
Sbjct: 428 LAHRREALNPEKVQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLV 475
>gi|309702335|emb|CBJ01657.1| exodeoxyribonuclease I [Escherichia coli ETEC H10407]
Length = 475
Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ +P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTHQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRGRLYTAKADLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEDIV 475
>gi|200388584|ref|ZP_03215196.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|199605682|gb|EDZ04227.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
Length = 476
Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 335/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDTEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|331663511|ref|ZP_08364421.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA143]
gi|331059310|gb|EGI31287.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA143]
Length = 474
Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats.
Identities = 239/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+++ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L P+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAFPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV 474
>gi|307130832|ref|YP_003882848.1| exonuclease I [Dickeya dadantii 3937]
gi|306528361|gb|ADM98291.1| exonuclease I [Dickeya dadantii 3937]
Length = 476
Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats.
Identities = 261/468 (55%), Positives = 330/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLPDPEAV ITG
Sbjct: 8 PTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G EAEF+R IH+ FS P TCI+GYNNIRFDD SRN+FYRNFYD Y +SW
Sbjct: 68 ITPQVAQSRGTREAEFARHIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLD++RA YA PDGI WP DDG SF+L+ L ANG+EH AHDA +DVY
Sbjct: 128 QNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P
Sbjct: 188 ATIAMARLLKQSQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GD++ +LD+ +L RL+T L + PVPIK VH+NKCP
Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLELDADELRTRLYTRRALLAEDESPVPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + E ER GID +RCL NL LLRQ ++R++ A++ P S DVD QL
Sbjct: 308 VLAPASTLRPEDAERLGIDRQRCLNNLQLLRQHGSVREKVVALFADAPPFEVSTDVDLQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D DR MD I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q W
Sbjct: 368 YDGFFSDADRAAMDIIRKTDSQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR+ + T R+++Y + L L ++ GDE K L+ AL+ Y Q ++
Sbjct: 428 LAHRRAVFTTDRVQDYFDALNQLYQQHDGDEKKTALLKALFAYAQQLL 475
>gi|168229383|ref|ZP_02654441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168466281|ref|ZP_02700151.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194472204|ref|ZP_03078188.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205353209|ref|YP_002227010.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207857502|ref|YP_002244153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|194458568|gb|EDX47407.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|195631242|gb|EDX49802.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|205272990|emb|CAR37938.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205335677|gb|EDZ22441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|206709305|emb|CAR33645.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326628296|gb|EGE34639.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 476
Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 334/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|323130390|gb|ADX17820.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
Length = 476
Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 334/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VPIK VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPIKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|238795750|ref|ZP_04639264.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
gi|238720476|gb|EEQ12278.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
Length = 476
Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats.
Identities = 254/468 (54%), Positives = 341/468 (72%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL +GV EAEF+R+I+Q F+VP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQHALANGVNEAEFARQINQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA YA P+GI WP +DG SFKL+ L ANG+EH++AHDA +DV+
Sbjct: 128 QGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVH 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+YLY +R+K+++ LIDI MTPLVHVSGMFGA+R NT+ +AP
Sbjct: 188 ATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCP 301
+AWHP K++VI C+L+GDM +LDS L +RL+T D+L +P+K VH+NKCP
Sbjct: 248 LAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAIPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ ER GID +RCL+NL LLRQ +R++ A++ + + S DVD+QL
Sbjct: 308 VLAPAKTLLPENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M IL+T + L L+L F D RL L FR+RARN+P+TL++ E++ W
Sbjct: 368 YNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEPLLFRFRARNYPNTLTDSEQKRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
LEHR++ L R+++Y +L+ +Y+ D+ K L+ AL+EY + ++
Sbjct: 428 LEHRREALNPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLV 475
>gi|16760997|ref|NP_456614.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|29141307|ref|NP_804649.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56413034|ref|YP_150109.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361958|ref|YP_002141595.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|213053400|ref|ZP_03346278.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213421859|ref|ZP_03354925.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
gi|213425574|ref|ZP_03358324.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213648908|ref|ZP_03378961.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|289829232|ref|ZP_06546844.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|25289114|pir||AF0763 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503295|emb|CAD02428.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136934|gb|AAO68498.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56127291|gb|AAV76797.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197093435|emb|CAR58890.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 476
Score = 734 bits (1896), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 334/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|16765397|ref|NP_461012.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|167990978|ref|ZP_02572077.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168242135|ref|ZP_02667067.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|194450582|ref|YP_002046116.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|16420598|gb|AAL20971.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|194408886|gb|ACF69105.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|205330564|gb|EDZ17328.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205338443|gb|EDZ25207.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|261247282|emb|CBG25107.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267994119|gb|ACY89004.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301158628|emb|CBW18140.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312913058|dbj|BAJ37032.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224713|gb|EFX49776.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|332989002|gb|AEF07985.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 476
Score = 734 bits (1896), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 334/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|290475866|ref|YP_003468758.1| exonuclease I [Xenorhabdus bovienii SS-2004]
gi|289175191|emb|CBJ81994.1| exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase
[Xenorhabdus bovienii SS-2004]
Length = 475
Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats.
Identities = 246/469 (52%), Positives = 330/469 (70%), Gaps = 2/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F ++DYETFG+ ALDRPAQFAG+R D + IE V +C PADDYLPDPEAV IT
Sbjct: 6 TPTFYVHDYETFGKHPALDRPAQFAGIRTDSDFNIIEDPLVVYCLPADDYLPDPEAVMIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL+ GV EAEF+R+IH+ FS PNTCIIGYNNIRFDD SRNIFYRNFYD Y +S
Sbjct: 66 GITPQLALKKGVNEAEFARQIHEAFSKPNTCIIGYNNIRFDDEVSRNIFYRNFYDPYAYS 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP +DG SFKL++L ANG+EH AHDA +DV
Sbjct: 126 WQKGNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLENLTKANGVEHTQAHDAMSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +++ +P+LF+Y + RNK ++ IDI M PLVHVSGMFG RSN +LIA
Sbjct: 186 YATIAMAKRVKKAQPRLFDYFFQLRNKQKVSNQIDIPQMKPLVHVSGMFGTLRSNISLIA 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
P+AWHP +++VI C+L+GD+ +L + +L +RL+T +EL+ G PVPIK +H+NKC
Sbjct: 246 PLAWHPTNRNAVIMCDLAGDISPLLELSADELRERLYTRRNELQPGQAPVPIKLMHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQ 359
PI+ P + + E ER G++ +C +NL +LR +R++ ++++P S +VD++
Sbjct: 306 PIIAPENTLRTEDAERVGLNRDQCAKNLAILRSNPQIREKVVELFSQPEEFPESDNVDTK 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GFF+D D+ M+ I TAP+ L L+L F D R+ L FRYRARN+P TL+ E+Q
Sbjct: 366 LYSGFFSDADKTAMEIIRETAPKNLPALDLTFQDPRIKTLLFRYRARNYPATLNYDEQQR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WL HR+++LT+ I +Y ++ L EY+ DE K + AL +Y +
Sbjct: 426 WLYHRREILTQENISQYLAAIEQLFVEYQSDEEKCRQLKALVDYAVQLA 474
>gi|309787899|ref|ZP_07682509.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
gi|308924298|gb|EFP69795.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
Length = 475
Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA Y P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPETLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|82543387|ref|YP_407334.1| exonuclease I [Shigella boydii Sb227]
gi|81244798|gb|ABB65506.1| deoxyribophosphodiesterase [Shigella boydii Sb227]
gi|320185776|gb|EFW60530.1| Exodeoxyribonuclease I [Shigella flexneri CDC 796-83]
gi|332097090|gb|EGJ02073.1| exodeoxyribonuclease I [Shigella boydii 3594-74]
Length = 474
Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMPPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + + +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|82777457|ref|YP_403806.1| exonuclease I [Shigella dysenteriae Sd197]
gi|81241605|gb|ABB62315.1| exonuclease I [Shigella dysenteriae Sd197]
Length = 475
Score = 733 bits (1894), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA Y P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L+ +Y D+ K L+ AL++Y + ++
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV 475
>gi|157145042|ref|YP_001452361.1| exonuclease I [Citrobacter koseri ATCC BAA-895]
gi|157082247|gb|ABV11925.1| hypothetical protein CKO_00773 [Citrobacter koseri ATCC BAA-895]
Length = 474
Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats.
Identities = 243/467 (52%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFASIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA+F+RRIH F+VP TC++GYNN+RFDD +RNI YRNFYD Y WSW
Sbjct: 68 ITPQEARDKGENEADFARRIHSLFTVPKTCVVGYNNVRFDDEVTRNILYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVH+SGMFGA R NT+ +AP
Sbjct: 188 ATIAMAQLVKSRQPRLFDYLYTHRNKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMSPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR +RD+ AI+ + + S++VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKVVAIFAEAEPFTPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDETEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y +LQ L +Y D+ K L+ +L++Y + ++
Sbjct: 428 EHRRQVFTPEFLQRYAEELQMLYQQYADDKEKLALLKSLWQYAEEIV 474
>gi|251789913|ref|YP_003004634.1| exonuclease I [Dickeya zeae Ech1591]
gi|247538534|gb|ACT07155.1| Exodeoxyribonuclease I [Dickeya zeae Ech1591]
Length = 476
Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats.
Identities = 258/468 (55%), Positives = 331/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLPDP+AV ITG
Sbjct: 8 PTFFVHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPADDYLPDPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF+R IH+ FSVP TCI+GYNNIRFDD SRN+FYRNF D Y +SW
Sbjct: 68 ITPQIAQSRGIRETEFARHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLD++RA YA PDGI WP DDG SF+L+ L ANG+EH AHDA +DVY
Sbjct: 128 QNGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P
Sbjct: 188 ATIAMARLLKQAQPKLFDYLYGLRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GD++ LD+ +L RL+T D L + PVPIK VH+NKCP
Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLSLDADELRTRLYTRRDLLAEDESPVPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + E ER GID + CL NL LLRQ +++R++ A++ P +++DVD QL
Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D DR M I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q W
Sbjct: 368 YDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR+ M T R+++Y + L L + GDE K L+ AL+ Y Q ++
Sbjct: 428 LAHRRAMFTTERVQDYFDTLNQLYQLHDGDEKKAALLKALFAYAQQLL 475
>gi|237732065|ref|ZP_04562546.1| exonuclease I [Citrobacter sp. 30_2]
gi|226907604|gb|EEH93522.1| exonuclease I [Citrobacter sp. 30_2]
Length = 474
Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats.
Identities = 246/467 (52%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP PEAV ITG
Sbjct: 8 PGFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW
Sbjct: 68 ITPQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QNDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHTNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+TS +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQIRDKVVAIFADAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+++ T +++Y N+LQ LS +Y ++ K L+ +L++Y + ++
Sbjct: 428 DHRRQVFTPEFLQDYANELQLLSQQYADNKEKLMLLKSLWQYAEEIV 474
>gi|317491333|ref|ZP_07949769.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920880|gb|EFV42203.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 474
Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats.
Identities = 256/469 (54%), Positives = 336/469 (71%), Gaps = 2/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+I+DYETFG+ ALDRPAQFAGVR D + IE V +C+P+DDYLP PEAV IT
Sbjct: 5 APTFLIHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPSDDYLPQPEAVMIT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL GV EAEFSR+I+Q FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +S
Sbjct: 65 GITPQVALTRGVSEAEFSRQINQIFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYS 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDV+R YA P+GI WP ++G SFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 125 WQNGNSRWDLLDVLRTCYALRPEGINWPENEEGLPSFKLEHLSKANGIEHENAHDAMADV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+AL L+++ +PKLF+YL+ RNK+++ L+DI NM PLVH+SGMFGA R NT+L+A
Sbjct: 185 YATIALAKLVKQAQPKLFDYLFQLRNKHKVSALLDIANMKPLVHISGMFGALRGNTSLVA 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+AWHP K++VI C+L+GDM +LD+ L +RL+T EL P P+K VH+NKC
Sbjct: 245 PLAWHPDNKNAVIMCDLAGDMSPLLELDTDALRERLYTRRSELRSDQPPAPLKLVHINKC 304
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P+L P + E+ ER G+D +RC++NL LLR LRD+ A++ + +S DVD+Q
Sbjct: 305 PVLAPDQTLRPENAERLGLDRQRCMDNLQLLRNHPELRDKVVAVFAEAEPFKASDDVDAQ 364
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+D DR M I T P+ L L+L F+D+R+ L FRYRARNFP TL++ E++
Sbjct: 365 LYDGFFSDADRSAMQIIRETLPQNLPALDLTFNDKRVLPLLFRYRARNFPTTLTDDEQRR 424
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W HR+ +LT R++ Y ++L+ L ++ + K + L+EY + ++
Sbjct: 425 WQLHRQAVLTPERLQAYIHQLEELYNRHEDEPEKLAQLKELFEYARQLV 473
>gi|283832563|ref|ZP_06352304.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
gi|291072232|gb|EFE10341.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
Length = 474
Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP PEAV ITG
Sbjct: 8 PGFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW
Sbjct: 68 ITPQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QNDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNPAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL LLR+ +RD+ AI+ + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLNLLRENPQVRDKVVAIFADAEPFAPSDNVDTQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+++ T ++ Y N+LQ+LS +Y ++ K L+ +L++Y Q ++
Sbjct: 428 DHRRQVFTPEFLQNYANELQTLSQQYADNKEKLMLLKSLWQYAQEIV 474
>gi|333002524|gb|EGK22085.1| exodeoxyribonuclease I [Shigella flexneri VA-6]
Length = 474
Score = 731 bits (1889), Expect = 0.0, Method: Composition-based stats.
Identities = 238/467 (50%), Positives = 324/467 (69%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q W
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWQ 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|261821314|ref|YP_003259420.1| exonuclease I [Pectobacterium wasabiae WPP163]
gi|261605327|gb|ACX87813.1| Exodeoxyribonuclease I [Pectobacterium wasabiae WPP163]
Length = 475
Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats.
Identities = 259/468 (55%), Positives = 331/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLP+PEAV ITG
Sbjct: 7 PTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 67 ITPQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVY
Sbjct: 127 QHGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L ++ +PKLFEYL+ RNKN+L LIDI M PLVHVSGMFGA+RSNT+ I P
Sbjct: 187 ATIAMAKLFKQAQPKLFEYLFPLRNKNKLSALIDIPQMKPLVHVSGMFGAARSNTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKCP
Sbjct: 247 LAWHPDNRNAVIMCDLAGDMTPLLELDSQALRERLYTRRDALTADQSAVPLKLVHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + + E ER GID +RCL+NL LLR +++R++ ++ + P ++S DVD +L
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNLALLRSNSDVREKVVELFAEAPAFAASDDVDLRL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q W
Sbjct: 367 YDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR+ + T R++ Y ++L L ++ D+ K + ALY Y Q ++
Sbjct: 427 LQHRRAVFTPERLQNYLSELSELYQRHEDDKEKMTQLKALYAYAQELV 474
>gi|24113393|ref|NP_707903.1| exonuclease I [Shigella flexneri 2a str. 301]
gi|30063460|ref|NP_837631.1| exonuclease I [Shigella flexneri 2a str. 2457T]
gi|24052413|gb|AAN43610.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
[Shigella flexneri 2a str. 301]
gi|30041713|gb|AAP17440.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
[Shigella flexneri 2a str. 2457T]
gi|281601461|gb|ADA74445.1| deoxyribophosphodiesterase [Shigella flexneri 2002017]
gi|313649951|gb|EFS14371.1| exodeoxyribonuclease I [Shigella flexneri 2a str. 2457T]
gi|332756645|gb|EGJ86994.1| exodeoxyribonuclease I [Shigella flexneri K-671]
gi|332756922|gb|EGJ87267.1| exodeoxyribonuclease I [Shigella flexneri 2747-71]
gi|332766358|gb|EGJ96567.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 2930-71]
gi|333002384|gb|EGK21946.1| exodeoxyribonuclease I [Shigella flexneri K-218]
gi|333017067|gb|EGK36388.1| exodeoxyribonuclease I [Shigella flexneri K-304]
Length = 474
Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats.
Identities = 239/467 (51%), Positives = 325/467 (69%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|260598502|ref|YP_003211073.1| exonuclease I [Cronobacter turicensis z3032]
gi|260217679|emb|CBA32024.1| Exodeoxyribonuclease I [Cronobacter turicensis z3032]
Length = 480
Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats.
Identities = 246/467 (52%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG+ +LDRPAQFA +R D + I +VF+CKPADDYLP PEAV ITG
Sbjct: 13 PTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITG 72
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G EA+F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 73 ITPQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 132
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLDVMRA YA P+GI WP DG SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 133 QNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVY 192
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P++F+YLY YR+K +L L+DI M PLVHVSGMFGA R NT+ IAP
Sbjct: 193 ATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLVDIVQMKPLVHVSGMFGAWRGNTSWIAP 252
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +L++ L +RL+T L PVP+K VHLNKCP+
Sbjct: 253 IAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALNDASPVPVKLVHLNKCPV 312
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E ER GID +RCL+NL +LR +R++ A++ + P + +VD+QLY
Sbjct: 313 LAQANTLRPEDAERLGIDRQRCLDNLKVLRDSPQVREKLVALFAEAPPFPPTDNVDAQLY 372
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TLSE+E++ WL
Sbjct: 373 DGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIGKLLFNYRARNFPGTLSEQEQERWL 432
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T ++ Y +L+ L +Y+ D+ K L+ ALY+Y Q ++
Sbjct: 433 AHRRDVFTPEFLQTYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 479
>gi|156933393|ref|YP_001437309.1| exonuclease I [Cronobacter sakazakii ATCC BAA-894]
gi|156531647|gb|ABU76473.1| hypothetical protein ESA_01206 [Cronobacter sakazakii ATCC BAA-894]
Length = 491
Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats.
Identities = 246/467 (52%), Positives = 324/467 (69%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG+ +LDRPAQFA +R D + I +VF+CKPADDYLP PEAV ITG
Sbjct: 24 PTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITG 83
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G EAEF+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 84 ITPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 143
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLDVMRA YA P+GI WP DG SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 144 QNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVY 203
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P++F+YLY YR+K +L LID M PLVHVSGMFGA R NT+ IAP
Sbjct: 204 ATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAP 263
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP +++VI +L+GD+ +L++ L +RL+T L VP+K VHLNKCP+
Sbjct: 264 VAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCPV 323
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E ER GID + CL NL +LR +R++ A++ P + +VD+QLY
Sbjct: 324 LAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTDNVDAQLY 383
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TLSE+E+ WL
Sbjct: 384 DGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQARWL 443
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + T ++ Y +L+ L +Y+ D+ K L+ ALY+Y Q ++
Sbjct: 444 AHRRDVFTPEFLQAYAQELEMLYNQYESDKEKTALLKALYQYAQEIV 490
>gi|271500784|ref|YP_003333809.1| exodeoxyribonuclease I [Dickeya dadantii Ech586]
gi|270344339|gb|ACZ77104.1| Exodeoxyribonuclease I [Dickeya dadantii Ech586]
Length = 476
Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats.
Identities = 258/468 (55%), Positives = 332/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ A DRPAQFAGVR D + I V +C+PADDYLPDPEAV ITG
Sbjct: 8 PTFFIHDYETFGKHPAKDRPAQFAGVRTDLNFTVIGEPVVIYCQPADDYLPDPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A + GV EAEF+ IH+ FSVP TCI+GYNNIRFDD SRN+FYRNF+D Y +SW
Sbjct: 68 ITPQVAQKRGVREAEFANHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFFDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLD++RA YA PDGI WP DDG SFKL+ L ANG+EH AHDA +DVY
Sbjct: 128 QQGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFKLEHLTRANGVEHTQAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +PKLF+YLY RNKN++ LIDI M PLVHVSGMFGA+R NT+ I P
Sbjct: 188 ATIAMARLLKQAQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GD++ LD+ +L RL+T + L + PVPIK VH+NKCP
Sbjct: 248 LAWHPDNRNAVIVCDLAGDIQPLLALDADELRTRLYTRRELLAEDESPVPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + E ER GID + CL NL LLRQ +++R++ A++ P +++DVD QL
Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQNSSVREKVVALFADAPPFEAAKDVDLQL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D DR M I +T + L LNL F+DRR+ EL FRYRARNFP TL E+E+Q W
Sbjct: 368 YDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR+++ T R++ Y + L L ++ GDE K + AL+ Y Q ++
Sbjct: 428 LAHRREVFTAERLQNYFDTLDQLYQQHDGDEKKTTQLKALFAYAQQLL 475
>gi|161502767|ref|YP_001569879.1| exonuclease I [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160864114|gb|ABX20737.1| hypothetical protein SARI_00818 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 476
Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats.
Identities = 242/467 (51%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + + +VF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIVGEPDVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEACEKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWD+LDVMRA YA P+GI WP DDG SF+L+ L AN IEH NAHDA ADVY
Sbjct: 130 QHENSRWDILDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANDIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVH+SGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L RL+T+ +L VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRDRLYTAKADLGNNAAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + SS +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFSSPDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDSDRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 430 AHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 476
>gi|333003504|gb|EGK23045.1| exodeoxyribonuclease I [Shigella flexneri K-272]
gi|333017330|gb|EGK36648.1| exodeoxyribonuclease I [Shigella flexneri K-227]
Length = 474
Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats.
Identities = 239/467 (51%), Positives = 325/467 (69%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPRAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LD L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|283785833|ref|YP_003365698.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
gi|282949287|emb|CBG88898.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
Length = 474
Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats.
Identities = 240/467 (51%), Positives = 327/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D + + EVF+CKPADDYLP P AV +TG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAALRTDGDFNVVGEPEVFYCKPADDYLPQPGAVLVTG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNI YRNFYD Y WSW
Sbjct: 68 ITPQEAREKGENEAAFAARIHALFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAQLVKSRQPRLFDYLYTHRNKDKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L +P+K VH+NKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDISSLLELDSDTLRERLYTAKADLGDNAAIPLKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR +RD+ AI+ + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKVLRDNPQVRDKAVAIFAEAEPFIPSDNVDTQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P+ L L++ F D+R+ +L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPQNLPALDITFVDKRIEKLLFNYRARNFPGTLDEAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L EY ++ K+ L+ +L++Y + ++
Sbjct: 428 EHRRQVFTPEFLQSYADELQRLYQEYGDNKEKQALLKSLWQYAEEIV 474
>gi|50121489|ref|YP_050656.1| exonuclease I [Pectobacterium atrosepticum SCRI1043]
gi|49612015|emb|CAG75464.1| exodeoxyribonuclease I [Pectobacterium atrosepticum SCRI1043]
Length = 475
Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats.
Identities = 258/468 (55%), Positives = 328/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P DDYLP+PEAV ITG
Sbjct: 7 PTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF+R+IH FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 67 ITPQIALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N NSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVY
Sbjct: 127 QNSNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L ++ +PKLFEYL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ I P
Sbjct: 187 ATIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GDM +LDS L +RL+T D L VP+K VH+NKCP
Sbjct: 247 LAWHPDNRNAVIMCDLAGDMTPLLELDSDALRERLYTRRDALTADQSAVPLKLVHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P + + E R GID +RCL+NL LLR ++R++ A++ + P ++S DVD +L
Sbjct: 307 VLAPANTLRPEDAARLGIDRQRCLDNLALLRNNADIREKVVALFAEVPAFAASDDVDLRL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q W
Sbjct: 367 YDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR+ + T R++ Y ++L L ++ D+ K + ALY Y Q ++
Sbjct: 427 LQHRRAVFTPERLQSYLSELSDLYQLHEDDKEKMTQLKALYAYAQDLV 474
>gi|212712795|ref|ZP_03320923.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
30120]
gi|212684487|gb|EEB44015.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
30120]
Length = 479
Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats.
Identities = 251/467 (53%), Positives = 327/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + I EVF+CKP DDYLP PEAV ITG
Sbjct: 12 PTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDYLPQPEAVMITG 71
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A+ +GV EAEF++RIHQ FSVPNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 72 ITPQIAMANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSW 131
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLD +RA +A P+GI WP DDG S +L+ L ANG+ H NAHDA +DV
Sbjct: 132 QQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVSHENAHDAMSDVL 191
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + L+++ +P++F+Y Y RNKN++ +LIDI +MTPLVHVSGMFGA RS +L+ P
Sbjct: 192 ATINMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVSLVTP 251
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP K++VI C+LSGDM L + +L +RL+T EL +PVPIK VH+NKCPI
Sbjct: 252 LAWHPENKNAVIMCDLSGDMSPLLTLSADELRERLYTPKAELGDDLPVPIKLVHINKCPI 311
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L PI+ + ER G+D C+ NL LLR+ ++R++ +++ S DVDSQ+Y
Sbjct: 312 LAPINTLRTVDAERTGLDRDLCMRNLELLRKNPDVRNKLIELFSVGQQFEESNDVDSQIY 371
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+ DR MD I TAP+ L L+L F D+R+ ELFFRY+ARN+P TLS E+Q WL
Sbjct: 372 NGFFSPSDRSTMDIIRETAPQNLPALDLSFEDKRMKELFFRYKARNYPSTLSYDEQQRWL 431
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ T +R+ +Y ++Q L G + DE + + AL Y +
Sbjct: 432 QHRRDYFTEARLTDYLQQIQLLMGVHHEDEKRCQQLKALVNYAYELA 478
>gi|294635527|ref|ZP_06714007.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
gi|291091096|gb|EFE23657.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
Length = 473
Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats.
Identities = 258/468 (55%), Positives = 330/468 (70%), Gaps = 1/468 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ +DYETFG+ ALDRPAQFAGVR D + IE +VF+C+PADDYLP PEAV IT
Sbjct: 5 APSFLFHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPEAVMIT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL G+ EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +S
Sbjct: 65 GITPQTALAQGICEAEFAERIHQLFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYS 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDV+R YA P GI WP + G SFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 125 WQNGNSRWDLLDVLRTCYALRPQGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + ++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+L+A
Sbjct: 185 YATIEMAKRAKQAQPRLFDYLFQLRNKNRVAQLIDIAEMTPLVHVSGMFGALRGNTSLVA 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWHP K++VI C+L+GD+ LDS L +RL+T EL PVPIK VH+NKCP
Sbjct: 245 PLAWHPDNKNAVIVCDLAGDITPLLTLDSETLRERLYTPRSELGDAAPVPIKLVHINKCP 304
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P E+ ER G+D +RCL+NL LR +RD+ +++ P + DVDSQL
Sbjct: 305 VLAPEKTLLAENAERLGLDRQRCLDNLAQLRHHHAVRDKVVSLFADAPPFPRASDVDSQL 364
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D DRQ M I T P+ L L+L F+D R+ L FRYRARN+P TL E E+Q W
Sbjct: 365 YDGFFSDADRQAMQIIRATQPQNLPALDLRFNDERITPLLFRYRARNYPATLDEAERQRW 424
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR++MLT R++EY L+ L Y+ + L+ AL++Y + ++
Sbjct: 425 QQHRREMLTAERVQEYLQTLEMLYNRYEDQPQRLTLLRALFDYARELV 472
>gi|317048759|ref|YP_004116407.1| exodeoxyribonuclease I [Pantoea sp. At-9b]
gi|316950376|gb|ADU69851.1| Exodeoxyribonuclease I [Pantoea sp. At-9b]
Length = 473
Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats.
Identities = 248/466 (53%), Positives = 327/466 (70%), Gaps = 1/466 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ +DYETFG+ +LDRPAQFAG+R D+ + I +VF+C+PADDYLP PEAV ITGI
Sbjct: 7 TFLFHDYETFGKSPSLDRPAQFAGLRTDKDFNAIGEPQVFYCQPADDYLPQPEAVMITGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A GV EA F+ RIH FS P TC++GYNN+RFDD +RNIFYRNF+D Y WSW
Sbjct: 67 TPQTAQARGVTEAAFAERIHGLFSEPQTCVVGYNNVRFDDEVTRNIFYRNFFDPYGWSWQ 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+ H AHDA +DVYA
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTKANGVAHEQAHDAMSDVYA 186
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
TLA+ L++EK+PKLFE+L+ +RNK +L LIDI M PLVHVSGMFGA+R NT+ + P+
Sbjct: 187 TLAMAKLVKEKQPKLFEFLFSHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
AWHP ++++I +L+GDM L +L +RL+T H EL VPIK VH+NKCP+L
Sbjct: 247 AWHPDNRNALIVADLAGDMSPLLTLSPDELRERLYTRHSELGDQAAVPIKLVHINKCPVL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
P + + E ER ID + CL NL LLRQ +R+ ++ + + S DVD+QLY+
Sbjct: 307 APANTLRPEDAERLNIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFTPSDDVDAQLYN 366
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ + +T + L L+L F D+R+ L FRYRARNFP TL + E+Q WL+
Sbjct: 367 GFFSDADRAAMNIVRQTPAQNLPALDLTFDDKRIARLLFRYRARNFPGTLDDAEQQRWLQ 426
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR++ L R++ + +L+SL+ ++G+ K GL+ ALY Y Q ++
Sbjct: 427 HRREALNAERVQAFLLELESLASLHEGNAEKLGLLKALYLYAQELV 472
>gi|300723649|ref|YP_003712954.1| exonuclease I [Xenorhabdus nematophila ATCC 19061]
gi|297630171|emb|CBJ90808.1| exonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase
[Xenorhabdus nematophila ATCC 19061]
Length = 476
Score = 726 bits (1876), Expect = 0.0, Method: Composition-based stats.
Identities = 249/468 (53%), Positives = 321/468 (68%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLPDPEAV ITG
Sbjct: 8 QSFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL GV E EF+R+IH+ S PNTCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQQALTKGVNEVEFARQIHEVLSKPNTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDV+RA YA P+GI WP DDG SFKL+ L ANGIEH +AHDA +DVY
Sbjct: 128 QKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGIEHTHAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P+LF+Y + RNK ++ IDI M PLVHVSGMFGA RSN +LIAP
Sbjct: 188 ATIAMAKLVKKAQPRLFDYFFQLRNKQKIINQIDIPQMKPLVHVSGMFGALRSNISLIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GD+ + + +L KRL+T DEL+ PVPIK VH+NKCP
Sbjct: 248 LAWHPTNRNAVIMCDLAGDISPLLEPNVDELRKRLYTRRDELQPNQSPVPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
I+ P + + E ER +D +C NL +LR +R+R +++ P S +VD++L
Sbjct: 308 IIAPENTLRPEDAERVELDRNQCEYNLAILRNHPQIRERVVELFSSPEEFPESDNVDAKL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF D D+ M+ I +TAP+ L L+L F D R+ L FRYRARN+P TL E+Q W
Sbjct: 368 YSGFFGDADKTAMEIIRKTAPQNLPALDLTFQDERIKALLFRYRARNYPATLDYDEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR+ +LT+ I +Y +++L EY+ DE K + L EY +
Sbjct: 428 LRHRQDILTQESISQYLATIEALFVEYQSDEEKCRQLKTLVEYAVQLA 475
>gi|291326156|ref|ZP_06123420.2| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
gi|291315456|gb|EFE55909.1| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
Length = 479
Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats.
Identities = 249/467 (53%), Positives = 325/467 (69%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE EVF+C PADDYLP PEAV ITG
Sbjct: 12 PTFFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIEEPEVFYCAPADDYLPQPEAVMITG 71
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF++RIH FSVPNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 72 ITPQVALSQGVNEAEFAKRIHAAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSW 131
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLD +RA +A P+G+QWP +DG S +L+ L ANG+ H NAHDA +DV
Sbjct: 132 QQGNSRWDLLDTLRACFALRPEGLQWPENEDGLPSMRLEHLTKANGVAHENAHDAMSDVL 191
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + L++ +P++F+Y Y RNKN++ +LIDI +TPLVHVSGMFGA RS +L+AP
Sbjct: 192 ATINMAKLLKAAQPRMFDYFYQLRNKNKISQLIDIVEITPLVHVSGMFGALRSYVSLVAP 251
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP K++VI C+LS D+ +LD QL RL+T EL G PVP+K VH+NKCPI
Sbjct: 252 LAWHPDNKNAVIMCDLSADISPLVELDVQQLRTRLYTPKAELAGASPVPVKLVHINKCPI 311
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLY 361
L P + E ER G+D C+ NL LR+ +R++ ++++P + S DVD+Q+Y
Sbjct: 312 LAPEKTLRPEDAERTGVDRDLCMRNLETLRKNPEIRNKLIELFSEPQVFTESDDVDTQIY 371
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+ DR MD I T+P+ L L L F D+R+ ELFFRY+ARN+P TLS E+Q WL
Sbjct: 372 NGFFSPSDRSTMDIIRETSPQNLPALELSFEDKRMKELFFRYKARNYPATLSYDEQQRWL 431
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ + R+ EY ++Q L E++ DE + + AL Y + +
Sbjct: 432 QHRRDYFSEERLTEYMQQIQLLLVEHQHDEKRCQQLKALISYARDLA 478
>gi|290508687|ref|ZP_06548058.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
gi|289778081|gb|EFD86078.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
Length = 474
Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats.
Identities = 250/467 (53%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV ITG
Sbjct: 8 PGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LD+ L +RL+TS EL L PIK VHLNKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTSRAELGDLPAAPIKLVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY
Sbjct: 308 LAQANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 428 EHRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|238919203|ref|YP_002932718.1| exonuclease I [Edwardsiella ictaluri 93-146]
gi|238868772|gb|ACR68483.1| exodeoxyribonuclease I [Edwardsiella ictaluri 93-146]
Length = 473
Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats.
Identities = 254/468 (54%), Positives = 330/468 (70%), Gaps = 1/468 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+PADDYLP P+AV IT
Sbjct: 5 APTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPDAVMIT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL GV EAEF+ RIH+ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +S
Sbjct: 65 GITPQTALAQGVCEAEFAGRIHRLFSVPGTCVLGYNNIRFDDEVSRNLFYRNFFDPYAYS 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDV+R YA P+GI WP + G SFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 125 WQNGNSRWDLLDVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LIA
Sbjct: 185 YATIALAQRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIA 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWHP K++VI C+L D+ LD+ L +RL+T +EL PVPIK VH+NKCP
Sbjct: 245 PLAWHPENKNAVIVCDLDSDITPLLTLDADALRERLYTPRNELGDAAPVPIKLVHINKCP 304
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L P ++ R G+D +RC +NL LL+Q + +RD+ +++ P S DVDSQL
Sbjct: 305 VLAPEKTLLADNAVRLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQL 364
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D DRQ M I T P+ L L+L F+DRR+ L FRYRARN+P TL E E + W
Sbjct: 365 YDGFFSDADRQAMQIIRATLPQNLPALDLRFNDRRITPLLFRYRARNYPATLDESEMRRW 424
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ MLT +++Y L+ L Y+ + L+ AL++Y + ++
Sbjct: 425 QQHRQSMLTPQHVQDYLQTLEMLYNRYEDQPQRLTLLQALFDYARELV 472
>gi|329298840|ref|ZP_08256176.1| exonuclease I [Plautia stali symbiont]
Length = 473
Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats.
Identities = 251/466 (53%), Positives = 329/466 (70%), Gaps = 1/466 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ +DYETFG+ +LDRPAQFAG+R D+ + + +VF+C+ ADDYLP PEAV ITGI
Sbjct: 7 TFLFHDYETFGKSPSLDRPAQFAGLRTDKAFNAVGEPQVFYCQLADDYLPQPEAVMITGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A GV E EF++RIH FS P TC+IGYNN+RFDD +RNIFYRNF D Y WSW
Sbjct: 67 TPQVANARGVQEVEFAQRIHALFSEPQTCVIGYNNVRFDDEVTRNIFYRNFIDPYGWSWQ 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLDVMRA YA P+GI WP DDG SFKL+ L ANG+ H AHDA +DVYA
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTQANGVAHEQAHDAMSDVYA 186
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
TLA+ L++EK+PKLFE+L+ +RNK +L LIDI M PLVHVSGMFGA+R NT+ I P+
Sbjct: 187 TLAMAKLVQEKQPKLFEFLFTHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 246
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
AWHP K+++I +L+GDM L +L +RL+T H +L L VPIK VH+NKCP+L
Sbjct: 247 AWHPDNKNALIVADLAGDMTPLLTLSPDELRERLYTRHSDLGDLPAVPIKLVHINKCPVL 306
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYD 362
P + + E ER GID + CL NL LLRQ +R+ ++ + + S+DVD+QLYD
Sbjct: 307 APANTLRPEDAERLGIDRQHCLANLALLRQHAEVRENVVTLFAEAEPFTPSEDVDAQLYD 366
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF+D DR M+ + +T P+ L L+L F D+R+ +L FRYRARNFP TL +KE+Q WL+
Sbjct: 367 GFFSDADRAGMNILRQTPPQNLPALDLTFEDKRIAKLLFRYRARNFPGTLDDKEQQRWLQ 426
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ L R++ + +L+SL+ ++GD K + ALY Y Q ++
Sbjct: 427 HCREQLNAERVKAFLLELESLASLHEGDAEKMAQLKALYLYAQELV 472
>gi|288934485|ref|YP_003438544.1| exodeoxyribonuclease I [Klebsiella variicola At-22]
gi|288889194|gb|ADC57512.1| Exodeoxyribonuclease I [Klebsiella variicola At-22]
Length = 474
Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats.
Identities = 249/467 (53%), Positives = 329/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV ITG
Sbjct: 8 PGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVH+SGMFGA+R NT+L+AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHISGMFGAARGNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + + ER GI +RCLEN LLR +R++ A+Y + S++VD+QLY
Sbjct: 308 LAQANTLRPQDAERLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 428 EHRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|110805983|ref|YP_689503.1| exonuclease I [Shigella flexneri 5 str. 8401]
gi|110615531|gb|ABF04198.1| Exodeoxyribonuclease I [Shigella flexneri 5 str. 8401]
Length = 474
Score = 725 bits (1873), Expect = 0.0, Method: Composition-based stats.
Identities = 237/467 (50%), Positives = 324/467 (69%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PL HVSGMFGA R NT+ +AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LD L + L+T+ +L VP+K VH++KCP+
Sbjct: 248 LAWHPENRNAVIMADLAGDISPLLELDIDTLRELLYTAKADLGDNAAVPVKLVHIDKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR ++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 428 EHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV 474
>gi|253989171|ref|YP_003040527.1| exonuclease I [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253780621|emb|CAQ83783.1| exodeoxyribonuclease i (exonuclease i) (dn
deoxyribophosphodiesterase) [Photorhabdus asymbiotica]
Length = 476
Score = 725 bits (1873), Expect = 0.0, Method: Composition-based stats.
Identities = 246/468 (52%), Positives = 325/468 (69%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGKHPALDRPAQFAGVRTDMDFNIIEDPLVIYCSPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL G+ EAEF+R+IH FSVPN CI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQVALEKGINEAEFARKIHNVFSVPNCCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDV+RA YA P+GI WP DDG SFKL+ L ANG+EH +AHDA +DVY
Sbjct: 128 QKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHSHAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+++ +P++F+Y + RNK ++ LIDI M PLVHVSGMFGA+RSNT+L+AP
Sbjct: 188 ATIAMAKLLKKAQPRMFDYFFQLRNKQKISNLIDIPQMKPLVHVSGMFGAARSNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GD+ +LD+ L +RL+T HDE L P P+K VH+NKCP
Sbjct: 248 LAWHPINRNAVIMCDLAGDISPLLELDADALRERLYTRHDELLPDQPPAPVKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
I+ P + + E ER G+D C +NL +LR +R++ ++ + S +VD++L
Sbjct: 308 IIAPDNTLRAEDAERLGLDRDHCEKNLAILRNNPQIREKVVELFAQAEPFPESDNVDAKL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D D+ M+ I T P+ L L+L F D R+ L FRYRARN+P TL+ E+Q W
Sbjct: 368 YDGFFSDADKTAMNIIRETLPQNLPALDLTFQDPRIKTLLFRYRARNYPSTLTYDEQQRW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR+ +LT+ ++ EY ++ L E++ +E K + L EY +
Sbjct: 428 LRHRQDVLTQDKLSEYIFIIEQLFIEHQSNEEKCRQLKTLMEYAVKLA 475
>gi|89330232|emb|CAJ84173.1| exodeoxyribonuclease I [Escherichia coli K-12]
Length = 467
Score = 725 bits (1873), Expect = 0.0, Method: Composition-based stats.
Identities = 241/459 (52%), Positives = 323/459 (70%), Gaps = 1/459 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLY 368
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 369 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 428
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL
Sbjct: 429 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467
>gi|227329384|ref|ZP_03833408.1| exonuclease I [Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 475
Score = 725 bits (1873), Expect = 0.0, Method: Composition-based stats.
Identities = 254/468 (54%), Positives = 330/468 (70%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ A DRPAQFAGVR D + I V +C+P+DDYLP+PEAV ITG
Sbjct: 7 PTFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF+R+IH+ FSVP TCI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 67 ITPQVALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLD +RA YA P+GI WP DDG SF+L+ L ANGI H AHDA +DVY
Sbjct: 127 QNGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L ++ +PKLF+YL+ RNKN++ LIDI M PLVHVSGMFGA+RSNT+ + P
Sbjct: 187 ATIAMAKLFKQAQPKLFDYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GDM +LDS L +RL+T D L+ VP+K VH+NKCP
Sbjct: 247 LAWHPDNRNAVIMCDLAGDMTPLLELDSEALRERLYTRRDALEANQSAVPLKLVHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAI-YNKPYTSSSQDVDSQL 360
+L P + + E ER GID +RCL+NL +LR ++R++ + + ++S DVD +L
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNLAVLRNNASVREKVVELFADASAFAASDDVDLRL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF D DR M I TAP+ L L+L F+D RL LFFRYRARNFP TL ++E+Q W
Sbjct: 367 YDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR+ + T ++ Y ++L +L ++ D+ K + ALY Y Q ++
Sbjct: 427 LQHRRAVFTPEHLQSYLSELNNLYQLHEDDKEKMAQLKALYAYAQELV 474
>gi|262275634|ref|ZP_06053443.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
gi|262219442|gb|EEY70758.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
Length = 474
Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats.
Identities = 231/468 (49%), Positives = 313/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYETFG ALDRP QFAGVR D+ + I V +C+P +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETFGTSPALDRPCQFAGVRTDKDFNIIGEPLVIYCQPPNDYLPQPEACLITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A++ G+ E EF +IH+ S+P TC +GYNNIRFDD +R YRNF+D Y W W
Sbjct: 67 ITPQTAVKRGLPEPEFIAKIHEQLSMPGTCAVGYNNIRFDDEVTRYTLYRNFFDPYGWIW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA YA PDGI+WP D+G SFKL+ L++ANGIEH NAHDA ADV+
Sbjct: 127 QNGNSRWDLLDVMRAAYALRPDGIEWPVNDEGNISFKLEHLSVANGIEHSNAHDAMADVH 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +P+LF+YLY +RNKN+L LID+ +M PLVHVSGMFG R NT+ I P
Sbjct: 187 ATIEMAKKLKAAQPRLFDYLYTHRNKNKLTALIDVVSMKPLVHVSGMFGVERGNTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VAWHP K++VI +L D DLD+ L +RL+T H +L +PVP+K +H+NKCP
Sbjct: 247 VAWHPDNKNAVIAIDLGRDPSPLFDLDADALRERLYTKHADLAPDELPVPVKLIHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L + E R GID ++CLENL L+ +R++ +Y + P +SS +VD+ L
Sbjct: 307 VLADAKTLRPEDAARLGIDRQQCLENLKKLQAHPEIREKLVTLYAEKPEYASSGNVDAAL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ DR MD I +T PE L+ L++ SD R+ L FRYRARNFP TL++ E++ W
Sbjct: 367 YDGFFSPADRSTMDIIRQTKPENLAALDIQVSDPRIKPLLFRYRARNFPWTLTDSEQKQW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ + + Y L++L+ + DE K ++ ++Y Y++ ++
Sbjct: 427 HMHRRDYF-EAELPAYMANLEALAEANQNDEKKFAILKSVYHYIESLV 473
>gi|227357738|ref|ZP_03842087.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
gi|227162067|gb|EEI47081.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
Length = 476
Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats.
Identities = 248/469 (52%), Positives = 325/469 (69%), Gaps = 2/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F IYDYETFG A+DRPAQFAGVR D + IE V +CKP DDYLP PEAV IT
Sbjct: 7 TPTFYIYDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL++GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S
Sbjct: 67 GITPQIALKNGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP DDG SF+L+ L ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +++ +P++F+Y ++ R+K +++ LIDI MTPLVHVSGMFGA+RSN +L+A
Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+AWHP +++VI C+L+ D+ L S QL +RL+T EL PVPIK +H+NKC
Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQ 359
PI+ P + + + +R G+D CL N +L +R++ I+ + + + DVD+Q
Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPADDVDAQ 366
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY+GFF+D DR M+ I T P+ L LNL F D R+ LFFRYRARNFP TL+ E+Q
Sbjct: 367 LYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQR 426
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WL HRK+ LT ++ EY N +Q L+ E+ +E K + LY Y Q +
Sbjct: 427 WLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEIA 475
>gi|183599505|ref|ZP_02960998.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
gi|188021751|gb|EDU59791.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
Length = 475
Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats.
Identities = 246/467 (52%), Positives = 316/467 (67%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + I+ EVF+C P DDYLP PEAV ITG
Sbjct: 8 PTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPTDDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF++RIHQ FS PNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 68 ITPQLALAQGVNEAEFAKRIHQQFSQPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLD +RA +A P+GI WP D+G S +L+ L ANGI H NAHDA +DV
Sbjct: 128 QQGNSRWDLLDTVRACFALRPEGIIWPENDEGLPSMRLEHLTKANGIAHENAHDAMSDVL 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + L++ +P++F Y Y RNKN++ +LIDI +MTPLVHVSGMFGA RS +L+AP
Sbjct: 188 ATINMAKLLKAAQPRMFNYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYISLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI C+L+ D+ +L L +RL+T EL G +PVPIK VH+NKCPI
Sbjct: 248 LAWHPDNRNAVIMCDLAADISPLVNLPVETLRERLYTPKTELDGELPVPIKLVHINKCPI 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L P + E ER G+D CL NL +LR+ ++R + I+ + DVD+Q+Y
Sbjct: 308 LAPEKTLRIEDAERTGVDRDLCLRNLEILRKHPDIRHKVIEIFAQAQPFEEPNDVDAQIY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+ DR MD I T + L L+L F D R+ ELFFRY+ARN+P TLS E+Q WL
Sbjct: 368 SGFFSSSDRSTMDIIRETPEKNLPALDLTFEDPRMKELFFRYKARNYPSTLSYDEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ T SR+ EY ++SL E++ D + + AL Y +
Sbjct: 428 QHRRDYFTESRLMEYMQSIESLMIEHQNDVERCKQLKALVNYAAELA 474
>gi|197284734|ref|YP_002150606.1| exonuclease I [Proteus mirabilis HI4320]
gi|194682221|emb|CAR41929.1| exodeoxyribonuclease I [Proteus mirabilis HI4320]
Length = 476
Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats.
Identities = 247/469 (52%), Positives = 324/469 (69%), Gaps = 2/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F I+DYETFG A+DRPAQFAGVR D + IE V +CKP DDYLP PEAV IT
Sbjct: 7 TPTFYIHDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL+ GV EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S
Sbjct: 67 GITPQIALKHGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP DDG SF+L+ L ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +++ +P++F+Y ++ R+K +++ LIDI MTPLVHVSGMFGA+RSN +L+A
Sbjct: 187 YATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+AWHP +++VI C+L+ D+ L S QL +RL+T EL PVPIK +H+NKC
Sbjct: 247 PLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQ 359
PI+ P + + + +R G+D CL N +L +R++ I+ + + + DVD+Q
Sbjct: 307 PIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPADDVDAQ 366
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY+GFF+D DR M+ I T P+ L LNL F D R+ LFFRYRARNFP TL+ E+Q
Sbjct: 367 LYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQR 426
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
WL HRK+ LT ++ EY N +Q L+ E+ +E K + LY Y Q +
Sbjct: 427 WLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEIA 475
>gi|269138522|ref|YP_003295222.1| exonuclease I [Edwardsiella tarda EIB202]
gi|267984182|gb|ACY84011.1| exonuclease I [Edwardsiella tarda EIB202]
Length = 477
Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats.
Identities = 255/467 (54%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+ ADDYLP P+AV ITG
Sbjct: 10 NTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL G EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +SW
Sbjct: 70 ITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+R YA +GI WP + G SFKL+ L+ ANGIEH NAHDA ADVY
Sbjct: 130 QNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LIAP
Sbjct: 190 ATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP K++VI C+L D+ LD+ L +RL+T EL PVPIK VH+NKCP+
Sbjct: 250 LAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L P ++ R G+D +RC +NL LL+Q + +RD+ +++ P S DVDSQLY
Sbjct: 310 LAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DRQ M I T P+ L L+L FSD R+ L FRYRARN+P TL E E++ W
Sbjct: 370 DGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRRWQ 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ MLT R+++Y L+ L Y+ K L+ AL++Y + ++
Sbjct: 430 QHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 476
>gi|153833726|ref|ZP_01986393.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
gi|148870005|gb|EDL68965.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
Length = 473
Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats.
Identities = 229/467 (49%), Positives = 314/467 (67%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T DEL L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRAR++ TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 QHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|304558543|gb|ADM41207.1| Exodeoxyribonuclease I [Edwardsiella tarda FL6-60]
Length = 475
Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats.
Identities = 255/467 (54%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N F+ +DYETFG+ A DRPAQFAGVR D + IE +VF+C+ ADDYLP P+AV ITG
Sbjct: 8 NTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL G EAEF+ RIHQ FSVP TC++GYNNIRFDD SRN+FYRNF+D Y +SW
Sbjct: 68 ITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+R YA +GI WP + G SFKL+ L+ ANGIEH NAHDA ADVY
Sbjct: 128 QNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL +++ +P+LF+YL+ RNKN++ +LIDI MTPLVHVSGMFGA R NT+LIAP
Sbjct: 188 ATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP K++VI C+L D+ LD+ L +RL+T EL PVPIK VH+NKCP+
Sbjct: 248 LAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L P ++ R G+D +RC +NL LL+Q + +RD+ +++ P S DVDSQLY
Sbjct: 308 LAPEKTLLVDNAARLGLDRQRCRDNLALLQQHSEIRDKVVSLFADAPPFPPSDDVDSQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DRQ M I T P+ L L+L FSD R+ L FRYRARN+P TL E E++ W
Sbjct: 368 DGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDENERRRWQ 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ MLT R+++Y L+ L Y+ K L+ AL++Y + ++
Sbjct: 428 QHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLTLLRALFDYARELV 474
>gi|282600282|ref|ZP_05973706.2| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
gi|282565948|gb|EFB71483.1| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
Length = 479
Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats.
Identities = 250/467 (53%), Positives = 321/467 (68%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + I+ EVF+CKP DDYLP PEAV ITG
Sbjct: 12 PTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCKPTDDYLPQPEAVMITG 71
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A +GV EAEF++RIHQ FS PNTCI+GYNNIRFDD +RNIFYRNFYD Y +SW
Sbjct: 72 ITPQIAQANGVNEAEFAKRIHQSFSTPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSW 131
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLD +RA +A P+GI WP DDG S +L+ L ANG+ H NAHDA +DV
Sbjct: 132 QQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVAHENAHDAMSDVL 191
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + L+++ +P++F+Y Y RNKN++ +LIDI MTPLVHVSGMFGA RS +L+AP
Sbjct: 192 ATINMAKLLKQAQPRMFDYFYQLRNKNKVSQLIDIVEMTPLVHVSGMFGALRSYVSLVAP 251
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP K++VI C+LS DM L++ +L +RL+T EL +PVPIK VH+NKCPI
Sbjct: 252 LAWHPDNKNAVIMCDLSADMSPLLTLNADELRERLYTPKAELGDALPVPIKLVHINKCPI 311
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P + ER GID CL NL +LR+ ++R++ I++ S DVD Q+Y
Sbjct: 312 LAPEKTLRTVDAERTGIDRDLCLRNLEILRKNPDVRNKLIEIFSVDQQFEESNDVDRQIY 371
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+ DR MD I TAP+ L L+L F D+R+ ELFFRY+ARN+P TLS E+Q WL
Sbjct: 372 SGFFSPSDRSTMDIIRETAPQNLPGLDLSFEDKRMKELFFRYKARNYPATLSYDEQQRWL 431
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+HR+ T +R+ EY ++Q L + DE + + AL Y +
Sbjct: 432 QHRRDYFTEARLTEYMQQIQLLMDIHHEDEKRCQQLKALVSYAADLA 478
>gi|156974404|ref|YP_001445311.1| exonuclease I [Vibrio harveyi ATCC BAA-1116]
gi|156525998|gb|ABU71084.1| hypothetical protein VIBHAR_02119 [Vibrio harveyi ATCC BAA-1116]
Length = 473
Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats.
Identities = 228/467 (48%), Positives = 314/467 (67%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP P+A ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVV 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T DEL L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRAR++ TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 QHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|37526737|ref|NP_930081.1| exonuclease I [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36786169|emb|CAE15221.1| exodeoxyribonuclease I (exonuclease I) (DNA
deoxyribophosphodiesterase) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 476
Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats.
Identities = 247/468 (52%), Positives = 326/468 (69%), Gaps = 2/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQHPALDRPAQFAGVRTDMDFNIIEEPLVIYCSPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EAEF+R+IH FSVPN+CI+GYNNIRFDD SRNIFYRNFYD Y +SW
Sbjct: 68 ITPQIALEKGVNEAEFARQIHNAFSVPNSCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDV+RA YA P+GI WP ++G SFKL+ L ANG+EH +AHDA +DVY
Sbjct: 128 QKGNSRWDLLDVLRACYALRPEGIIWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++E +P++F Y + RNK ++ LIDI M PLVHVSGMFGA+RSN +L+AP
Sbjct: 188 ATIAMAKLLKEVQPRMFNYFFQLRNKQKINALIDIPQMKPLVHVSGMFGAARSNLSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
+AWHP +++VI C+L+GD+ +LD+ L +RL+T HDEL+ PVPIK VH+NKCP
Sbjct: 248 LAWHPANQNAVIVCDLAGDISPLLELDADALRERLYTRHDELQPDQPPVPIKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
I+ P + + E ER G+D C NL +L+ +R++ ++ + S +VD++L
Sbjct: 308 IVAPDNTLRTEDAERIGLDRDYCGRNLAILQNNPQIREKVVELFAEAEPFPESNNVDTKL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M+ I T P+ L L+L F D R+ L FRYRARN+P TL+ E+Q W
Sbjct: 368 YDGFFSSADKAAMNIIRETLPQNLPALDLTFQDSRIKTLLFRYRARNYPTTLTYDEQQHW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L HR+++ T+ ++ EY ++ L EY+G+E K + AL EY +
Sbjct: 428 LRHRQEIFTQDKLSEYFFIIEQLFTEYQGNEEKCRQLKALMEYAVQLA 475
>gi|262040031|ref|ZP_06013293.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042608|gb|EEW43617.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 474
Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITG
Sbjct: 8 PGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY
Sbjct: 308 LAQANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 428 EHRRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|254228381|ref|ZP_04921808.1| exonuclease family [Vibrio sp. Ex25]
gi|262394467|ref|YP_003286321.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
gi|151939187|gb|EDN58018.1| exonuclease family [Vibrio sp. Ex25]
gi|262338061|gb|ACY51856.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
Length = 473
Score = 722 bits (1864), Expect = 0.0, Method: Composition-based stats.
Identities = 226/467 (48%), Positives = 313/467 (67%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNVIGEPLVMYCQPPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R K +L +L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 LHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891]
Length = 474
Score = 721 bits (1863), Expect = 0.0, Method: Composition-based stats.
Identities = 229/466 (49%), Positives = 304/466 (65%), Gaps = 3/466 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPHPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF +IH+ + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQTAETQGLSEPEFIAKIHEQLATPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA YA P+GI+WP D+G SFKL+ L+ NGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACYALRPEGIEWPVNDEGFISFKLEHLSKENGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ + P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWVVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VAWHP +++VI +L+ D + DLD QL +RL+T H EL +PVP+K +HLNKCP
Sbjct: 247 VAWHPTNQNAVICVDLAKDPQALLDLDVEQLNERLYTKHSELGPDELPVPVKLIHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E+ E+ GID ++CL NL LLRQ +R++ +Y+ + S DVD+ L
Sbjct: 307 ILAPAKTLTAENAEKIGIDREQCLNNLALLRQHPEVREKLIGLYSAEREYEKSSDVDTML 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ MD I T P L+ L++ F+D+R+ L FRYRARNFP TL E E+Q W
Sbjct: 367 YDGFFSPADKTAMDIIRETDPNNLTALDITFNDQRIDPLLFRYRARNFPWTLDESEQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
H + SRIE+Y L++L E++ D+ K ++ ++Y+Y+Q
Sbjct: 427 ANHCRDYF-ESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQK 471
>gi|206578810|ref|YP_002237569.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
gi|206567868|gb|ACI09644.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
Length = 474
Score = 721 bits (1863), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITG
Sbjct: 8 PGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY
Sbjct: 308 LAQANTLRPLDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 428 EHRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|330000618|ref|ZP_08303759.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
gi|328537942|gb|EGF64123.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
Length = 474
Score = 721 bits (1863), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITG
Sbjct: 8 PGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LD+ L +RL+T EL PIK VHLNKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDQPAAPIKLVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY
Sbjct: 308 LAQANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 428 EHRRQVFTPEFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|238895590|ref|YP_002920325.1| exonuclease I [Klebsiella pneumoniae NTUH-K2044]
gi|238547907|dbj|BAH64258.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 474
Score = 721 bits (1863), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITG
Sbjct: 8 PGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY
Sbjct: 308 LAQANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 428 EHRRQVFTPAFLQAYADELQMLYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326]
gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326]
Length = 474
Score = 721 bits (1863), Expect = 0.0, Method: Composition-based stats.
Identities = 230/468 (49%), Positives = 307/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF +IH+ ++PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA YA P+G++WP D+G SFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACYALRPEGVEWPENDEGFISFKLEHLSKANGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + I+ +PKLF+Y R+K +L L+DI NMTPL+HVSGM G + T+ + P
Sbjct: 187 ATIEMAKKIKAAQPKLFDYFLSMRHKRKLNDLVDIVNMTPLMHVSGMLGKECNYTSWMVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ D + DLD QL +RL+T H EL + +PVP+K VHLNKCP
Sbjct: 247 LAWHPTNQNAVIMVDLAKDPQPLLDLDVEQLNQRLYTKHSELAEDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E+ E GID +CL+NL LLRQ +R++ +Y+ + + DVD+ L
Sbjct: 307 ILAPAKTLTAENAETIGIDRDQCLKNLALLRQHPEVREKLIGLYSIEREYAKDNDVDAML 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ MD I T P L+ L++ F+D R+ L FRYRARNFP +L E E+Q W
Sbjct: 367 YDGFFSPADKASMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWSLDESEQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIEEY L++L E++ DE K ++ ++Y+Y+Q ++
Sbjct: 427 ANHCREYF-ESRIEEYMLNLENLVHEHESDEKKLAILKSVYQYVQKLV 473
>gi|27366077|ref|NP_761605.1| exonuclease I [Vibrio vulnificus CMCP6]
gi|27362277|gb|AAO11132.1| Exodeoxyribonuclease I [Vibrio vulnificus CMCP6]
Length = 473
Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats.
Identities = 229/467 (49%), Positives = 310/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP+QFA VR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCPI
Sbjct: 247 LAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ LY
Sbjct: 307 LAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTMLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W
Sbjct: 367 DGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIEEY L++L E++ DE K ++ ++Y Y + +I
Sbjct: 427 NHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLI 472
>gi|37679656|ref|NP_934265.1| exonuclease I [Vibrio vulnificus YJ016]
gi|37198401|dbj|BAC94236.1| exonuclease I [Vibrio vulnificus YJ016]
Length = 473
Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats.
Identities = 230/467 (49%), Positives = 311/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCPI
Sbjct: 247 LAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ LY
Sbjct: 307 LAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W
Sbjct: 367 DGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIEEY L++L E++ DE K ++ ++Y Y + +I
Sbjct: 427 NHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLI 472
>gi|320156592|ref|YP_004188971.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
gi|319931904|gb|ADV86768.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
Length = 473
Score = 720 bits (1860), Expect = 0.0, Method: Composition-based stats.
Identities = 230/467 (49%), Positives = 311/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA ++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G++WP ++G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R+K +L +LIDI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++VI +L+ D + DLD+ L +RL+T HDEL L+PVP+K VHLNKCPI
Sbjct: 247 LAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ GID ++CL NL L+RQ +R++ +++ + S DVD+ LY
Sbjct: 307 LAPAKTLTAENAANIGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ MD I +T P L+ L++ F+D+R+ L FRYRARN+P TL E E++ W
Sbjct: 367 DGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLDENEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIEEY L++L E++ DE K ++ ++Y Y + +I
Sbjct: 427 NHCREYF-ESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLI 472
>gi|28898075|ref|NP_797680.1| exonuclease I [Vibrio parahaemolyticus RIMD 2210633]
gi|153836551|ref|ZP_01989218.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
gi|260366376|ref|ZP_05778815.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
gi|260878424|ref|ZP_05890779.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
gi|260897003|ref|ZP_05905499.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
gi|28806289|dbj|BAC59564.1| exodeoxyribonuclease I [Vibrio parahaemolyticus RIMD 2210633]
gi|149750149|gb|EDM60894.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
gi|308087707|gb|EFO37402.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
gi|308091094|gb|EFO40789.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
gi|308113162|gb|EFO50702.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
Length = 473
Score = 720 bits (1860), Expect = 0.0, Method: Composition-based stats.
Identities = 225/467 (48%), Positives = 312/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+++G+ E EF +IH S P T +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ NGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 LHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|152971008|ref|YP_001336117.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|150955857|gb|ABR77887.1| 3' --> 5' specific exonuclease I [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 474
Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats.
Identities = 248/467 (53%), Positives = 330/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG +LDRPAQFA +R D + + EVF+CKPADDYLP P+AV ITG
Sbjct: 8 PGFLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL G EA F+RRIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 68 ITPQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP D+G SF+L+ L +ANGIEH NAHDA ADVY
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +RNK +L LID+ M PLVHVSGMFGA+R NT+L+AP
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GDM +LD+ L +RL+T EL L PIK VHLNKCP+
Sbjct: 248 LAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + + +R GI +RCLEN LLR +R++ A+Y + S++VD+QLY
Sbjct: 308 LAQANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F+D+R+ L F YRARNFP TL E E+Q WL
Sbjct: 368 NGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T + ++ Y ++LQ L +Y D+ K + AL++Y Q ++
Sbjct: 428 EHRRQVFTPAFLQAYADELQILYQQYADDKEKLAQLKALWQYAQDIV 474
>gi|163801030|ref|ZP_02194930.1| exodeoxyribonuclease I [Vibrio sp. AND4]
gi|159175379|gb|EDP60176.1| exodeoxyribonuclease I [Vibrio sp. AND4]
Length = 473
Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats.
Identities = 224/467 (47%), Positives = 312/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+++G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAMQEGLSEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + RNK +L +L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T +EL L+P+P+K +HLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPLLELSAEKLQERLYTKREELGDLLPIPVKLIHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL NL LLRQ +R++ +++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAEIIGIDRQKCLNNLALLRQHPEIREKLIGLFSIEREFQKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+ DR MD I T L+ L++ F D+R+ L FRYRAR++ TL E+E++ W
Sbjct: 367 EGFFSPADRAAMDIIRETDAHNLAALDIEFDDKRIKPLLFRYRARHYAGTLDEQEQRRWE 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+H +++ +IEEY L++L E++ DE K L+ ++Y Y++ +
Sbjct: 427 QHCREVF-EGQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLA 472
>gi|260778470|ref|ZP_05887362.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
gi|260604634|gb|EEX30929.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
Length = 474
Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats.
Identities = 232/468 (49%), Positives = 309/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP+QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF +IH+ S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAASKGLPEPEFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+GI WP ++G SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGINWPENEEGFISFKLEHLSVANGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ + P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWVVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VAWHP +++VI +L+ D + DLD QL +RL+T H EL +PVPIK VHLNKCP
Sbjct: 247 VAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E+ GID ++CL+NL LRQ +R++ ++Y+ + S DVD+ L
Sbjct: 307 ILAPAKTLTAENAANIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTML 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ +Q MD I T P+ LS L++ FSD R+ L FRYRAR+FP TL E E+Q W
Sbjct: 367 YDGFFSPAAKQSMDIIRETEPKNLSALDISFSDDRIAPLLFRYRARHFPWTLDESEQQKW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIE+Y L++L E++ DE K ++ ++Y+Y+Q ++
Sbjct: 427 AAHSREYF-ESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLV 473
>gi|311278993|ref|YP_003941224.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
gi|308748188|gb|ADO47940.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
Length = 474
Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats.
Identities = 251/468 (53%), Positives = 329/468 (70%), Gaps = 1/468 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ +DYETFG +LDRPAQFA +R D + I EVF+CKPADDYLP P+AV IT
Sbjct: 7 PPGFLFHDYETFGTSPSLDRPAQFAALRTDGDFNVIGEPEVFYCKPADDYLPQPQAVLIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+AL G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WS
Sbjct: 67 GITPQEALAKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N NSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANGIEH NAHDA ADV
Sbjct: 127 WQNHNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADV 186
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ L++ ++P+LF+YLY YRNKN+L LID+ M PLVHVSGMFGA R NT+ IA
Sbjct: 187 YATIAMAQLVKSRQPRLFDYLYTYRNKNKLATLIDVPQMKPLVHVSGMFGAWRGNTSWIA 246
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWHP +++VI +L+GDM +L + +L RL+T+ L L VP+K VHLNKCP
Sbjct: 247 PLAWHPDNRNAVIVVDLAGDMSPLLELTADELRDRLYTAKASLGDLAAVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L + + E +R GI+ ++CL+NL LLR +RD+ AI+ SQ+VD+QL
Sbjct: 307 VLAQANTLRPEDADRLGINRQQCLDNLKLLRDNPQVRDKVVAIFADAAPFVPSQNVDAQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D DR M +L T P L L+L F+D R+ +L F YRARNFP TL + E+Q W
Sbjct: 367 YNGFFSDADRAAMKILLETEPRNLPALDLTFADTRIEKLLFNYRARNFPGTLDDAEQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L+HR+++ T ++ Y ++LQ LS +Y D+ K L+ L++Y Q ++
Sbjct: 427 LQHRREVFTPEFLQAYADELQLLSQQYAEDKAKLALLKTLWQYAQDIV 474
>gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546]
gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546]
Length = 474
Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats.
Identities = 231/466 (49%), Positives = 308/466 (66%), Gaps = 3/466 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G A DRP QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF +IH+ ++PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA YA P+GI+WP ++G SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACYALRPEGIEWPENEEGFISFKLESLSVANGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y R+K +L +L+DI NMTPL+HVSGM G + T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VAWHP +++VI +L+ D + DLD+ QL +RL+T H +L +PVP+K V LNKCP
Sbjct: 247 VAWHPTNQNAVICVDLAKDPQALLDLDTEQLNQRLYTKHSDLGPDELPVPVKLVQLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E+ E+ GID ++CLENL LLR+ +R++ +Y + SQDVDS L
Sbjct: 307 ILAPAKTLTAENAEKIGIDREKCLENLALLRKHPEIREKLIGVYAIEREYEKSQDVDSML 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ MD I T P L+ L++ F+D R+ L FRYRARNFP TL E E+Q W
Sbjct: 367 YDGFFSPADKAAMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWTLDESEQQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
H + SRIE+Y L++L+ E++ D+ K ++ ++Y+Y+Q
Sbjct: 427 ALHCRDYF-ESRIEDYMLNLENLAHEHESDQKKMAILKSIYQYVQK 471
>gi|328472968|gb|EGF43816.1| exonuclease I [Vibrio parahaemolyticus 10329]
Length = 473
Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats.
Identities = 225/467 (48%), Positives = 311/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+++G+ E EF +I S P T +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAMQEGLSEPEFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA +A P+GI+WP +DG TSFKL+ L++ NGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVLRACHALRPEGIEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAENIGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 LHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|91223947|ref|ZP_01259211.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
gi|91191439|gb|EAS77704.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
Length = 473
Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats.
Identities = 225/467 (48%), Positives = 311/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAG R D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKTVQEGLSEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADVV 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R K +L L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 LHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|269966310|ref|ZP_06180397.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
gi|269829049|gb|EEZ83296.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
Length = 473
Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats.
Identities = 225/467 (48%), Positives = 311/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DR +QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPAKDRSSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQK +++G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHDAMADVV 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R K +L L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL NL LLRQ +R++ ++++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAESIGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 LHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|260901800|ref|ZP_05910195.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
gi|308108118|gb|EFO45658.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
Length = 473
Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats.
Identities = 225/467 (48%), Positives = 312/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+++G+ E EF +IH S P T +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ NGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + ++ +PKLF+Y + R+K +L +L+DI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
VAWHP ++VI +L+ D + +L + +L +RL+T ++L L+PVP+K VHLNKCPI
Sbjct: 247 VAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P E+ E GID ++CL+NL LLRQ +R++ +++ + S DVD+QLY
Sbjct: 307 LAPAKTLTAENAENIGIDRQKCLDNLALLRQYPEIREKLIGLFSIERQFEKSDDVDTQLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P L+ L++ F D+R+ L FRYRARNFP TL E+E++ W
Sbjct: 367 DGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQRRWA 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H +++ S+IEEY L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 LHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLA 472
>gi|148975895|ref|ZP_01812684.1| exonuclease I [Vibrionales bacterium SWAT-3]
gi|145964640|gb|EDK29893.1| exonuclease I [Vibrionales bacterium SWAT-3]
Length = 474
Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats.
Identities = 227/468 (48%), Positives = 313/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT
Sbjct: 7 PTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITR 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+ G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAVSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA++A PDGI WP ++G SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PK+F+YLY+ R+K +L +L+DI NMTPL+HVSGMFG + T+ I P
Sbjct: 187 ATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ D +LD+ +L +RL+T +L + +PVPIK V LNKCP
Sbjct: 247 MAWHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSDLNEDELPVPIKLVQLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQL 360
IL P E+ E GID ++CL+NL +LR+ +R++ +Y++ S DVD+QL
Sbjct: 307 ILAPAKTLTAENAETIGIDRQQCLKNLAILREHPEIREKLIGLYSQEREYEKSDDVDTQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M+ I T P L+ L++ FSD R+ L FRYRARNFP TL E E+ W
Sbjct: 367 YDGFFSPADKTAMNIIRETDPNNLAVLDITFSDERIKPLLFRYRARNFPWTLDESEQLKW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SR+EEY L++L+ E++ DE K ++ A+Y+Y++ +
Sbjct: 427 ANHCRE-FYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLA 473
>gi|117619062|ref|YP_856430.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560469|gb|ABK37417.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 564
Score = 716 bits (1850), Expect = 0.0, Method: Composition-based stats.
Identities = 213/466 (45%), Positives = 311/466 (66%), Gaps = 2/466 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYETFG A DRPAQFAG+R D + I V +CKP DYLP+PEA ITG
Sbjct: 100 PTFYFHDYETFGISPAKDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYLPEPEACLITG 159
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA++DG+ EA+F R+IH+ F+ P TC++GYN+IRFDD +R YRNFYD Y ++W
Sbjct: 160 ITPQKAMKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAW 219
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD+LD++RA YA P+GI+W ++G SFKL+ L +ANG+ H NAHDA +DV
Sbjct: 220 QNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFKLEKLTVANGVAHANAHDALSDVL 279
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + L+++ +PKLF YL+D RNKN+++ LID+ M PLVHVSGMF + + ++P
Sbjct: 280 ATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSP 339
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+ D +L S ++ +RL+T +EL L +P+K VH+NKCP+
Sbjct: 340 LAWHPSNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCPV 399
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-DVDSQLY 361
L P E ++ GID ++C ++L LLR +R++ ++N+ + ++ D D+QLY
Sbjct: 400 LAPAATLTAERADQLGIDREQCRKSLDLLRAHPEVREKLVEVFNQEFAGNNDGDPDTQLY 459
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W
Sbjct: 460 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWR 519
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
H +R R+ +Y +L+ L+ + +G+E ++ +LY YL+ +
Sbjct: 520 LHCSDYFSR-RLPDYVPRLEELAEQNQGNERNFAILKSLYHYLENL 564
>gi|149912138|ref|ZP_01900724.1| putative exonuclease I [Moritella sp. PE36]
gi|149804786|gb|EDM64828.1| putative exonuclease I [Moritella sp. PE36]
Length = 480
Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats.
Identities = 238/467 (50%), Positives = 312/467 (66%), Gaps = 2/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYETFG +LDRP+QFAG+R D + I ++F+C+ +DDYLP PEA ITG
Sbjct: 13 PTFYWHDYETFGLSPSLDRPSQFAGIRTDMDFNVIGEPDMFYCRQSDDYLPSPEATLITG 72
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQK +GV EAEFS+RI FS NTCIIGYNNIRFDD +RNIFYRNFYD Y +W
Sbjct: 73 ITPQKTQAEGVNEAEFSKRIEAQFSHKNTCIIGYNNIRFDDEVTRNIFYRNFYDPYAHTW 132
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWD++D+MRA YA P+GI WP DDG S +L+ L ANGIEH NAHDA +DVY
Sbjct: 133 KDGNSRWDIIDLMRACYALRPEGIVWPENDDGLPSMRLELLTKANGIEHANAHDATSDVY 192
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++EK+PKLF++L++ R+K ++ LIDI NMTPLVHVSGMFGA R T+ + P
Sbjct: 193 ATIAMAKLVKEKQPKLFDFLFNLRSKRKVESLIDIINMTPLVHVSGMFGADRGFTSWVVP 252
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++VI +L+ D+ +L + +L +RL+T +L L P+P+K +H+NKCP+
Sbjct: 253 LAWHPTNNNAVIVADLAQDITPLLELSADELRERLYTPKKDLGDLAPIPLKLIHINKCPV 312
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQLY 361
L P E+ ER GID CL NL L++ LR+ +Y S +VD+ +Y
Sbjct: 313 LAPAKTLLPENAERLGIDRNACLANLKRLKESATLRENVVGVYQVDREYPKSNNVDAMIY 372
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ D+ + + TAPEQL L L SD R ELFFRYRARNFPH LS E+Q WL
Sbjct: 373 DGFFSAGDKANFEILRETAPEQLVGLQLKISDERFNELFFRYRARNFPHLLSMPEQQKWL 432
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + +L S Y ++L +L+ E DE K L+ LY Y Q +I
Sbjct: 433 NHCRSVLEDSA-PAYFDRLDALAIENSHDERKMKLLQQLYLYGQTII 478
>gi|197263773|ref|ZP_03163847.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197242028|gb|EDY24648.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
Length = 476
Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats.
Identities = 247/467 (52%), Positives = 333/467 (71%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLY
Sbjct: 310 LAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WL
Sbjct: 370 DGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWL 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++LT +++Y N+LQ LS +Y D+ K GL+ L++Y ++
Sbjct: 430 EHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKLLWQYATEIV 476
>gi|147788|gb|AAA19938.1| exonuclease I [Escherichia coli]
Length = 466
Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats.
Identities = 238/467 (50%), Positives = 321/467 (68%), Gaps = 10/467 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YL+ LID+ +M PLVHVSGMFGA R NT+ +AP
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLF---------ALIDVPHMKPLVHVSGMFGAWRGNTSWVAP 239
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+
Sbjct: 240 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 299
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L + + E +R GI+ + CL+NL +LR+ R++ AI+ + + S +VD+QLY
Sbjct: 300 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQEREKVVAIFAEAEPFTPSDNVDAQLY 359
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
+GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WL
Sbjct: 360 NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWL 419
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EHR+++ T ++ Y ++LQ L +Y D+ K L+ AL++Y + +
Sbjct: 420 EHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIA 466
>gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1]
gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1]
Length = 473
Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats.
Identities = 224/468 (47%), Positives = 301/468 (64%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G A DR QFAGVR D + I V +C+P DYLP PEA ITG
Sbjct: 6 PTYFFFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALITG 65
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 66 ITPQLCQEKGLSEPEFIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 125
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 QNGNSRWDLLDVMRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHENAHDAMADVI 185
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y Y R K +L +L+DI NMTPL+HVSGM G T+ + P
Sbjct: 186 ATIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYTSWVVP 245
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ D + DLD L +RL+T HDEL PVP+K +HLNKCP
Sbjct: 246 IAWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIHLNKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E+ E GID ++CL+NL L++Q +R++ +Y+ + + DVD+QL
Sbjct: 306 ILAPAKTLTAENAESIGIDREQCLKNLALIKQHPEIREKLIGLYSIEREFENDGDVDTQL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ D+ MD I T P LS L++ FSD R+ L FRYRARNFP +L E E+ W
Sbjct: 366 YSGFFSPADKSAMDIIRETDPNNLSALDISFSDPRIEPLLFRYRARNFPWSLDETEQARW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ SRIE Y +++L E++ DE K ++ ++Y Y++ ++
Sbjct: 426 ANHCRE-FFESRIESYMLNMENLVHEHESDEKKLAILKSVYRYVERLV 472
>gi|85059110|ref|YP_454812.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
gi|84779630|dbj|BAE74407.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
Length = 473
Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats.
Identities = 281/466 (60%), Positives = 345/466 (74%), Gaps = 1/466 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+++DYETFG+ ALDRPAQFAG+R D Q+E + EVFFC+PADDYLPDPEAV ITG
Sbjct: 8 PTFLVHDYETFGKYPALDRPAQFAGIRADSQFETLGEPEVFFCRPADDYLPDPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+ALRDGV EAEF+RRIHQ FSVP+TCI+GYNN+RFDD SRN+FYRNFYD Y WSW
Sbjct: 68 ITPQQALRDGVTEAEFARRIHQLFSVPDTCILGYNNVRFDDEVSRNLFYRNFYDPYGWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNS WDLLDV+RA YA P+GI+WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 128 QQGNSCWDLLDVVRACYALRPNGIEWPLNDDGLPSFRLEHLTRANGIEHANAHDAMADVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
ATLA+ L+R+ +PKLF+YLY +R K QL+ L+DI M PLVHVSGMFGA+R NTA IAP
Sbjct: 188 ATLAMAKLMRQAQPKLFDYLYRHRGKRQLKSLVDIATMKPLVHVSGMFGAARGNTAWIAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++I C+LSGDM+V DLDS L RL+T D L VP+K V+LNKCP+
Sbjct: 248 LAWHPDNPNALIVCDLSGDMQVLADLDSDALRTRLYTRRDALGDNTAVPLKLVYLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L P + + ER GI +RCL+NLT LR + LR++ A++ + SS DVD+QLY
Sbjct: 308 LAPANTLQPMDAERLGIQRQRCLDNLTWLRARPELREKVVALFAESAPFKSSDDVDAQLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+D DR M+ IL TAPE L L++ F D RL L FRYRARNFPHTL E+ WL
Sbjct: 368 DGFFSDADRAAMEIILATAPENLPALDISFVDARLKPLLFRYRARNFPHTLDHNEQLRWL 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
EHRK T+ R+E Y +L++L ++GDE K L+ AL+EYLQ +
Sbjct: 428 EHRKTRFTQPRLEAYVQQLETLYLAHEGDEHKTRLLRALFEYLQTL 473
>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
gi|254040338|gb|ACT57134.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
Length = 471
Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats.
Identities = 471/471 (100%), Positives = 471/471 (100%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI
Sbjct: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW
Sbjct: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD
Sbjct: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI
Sbjct: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC
Sbjct: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL
Sbjct: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW
Sbjct: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE
Sbjct: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
>gi|229515610|ref|ZP_04405069.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
gi|229347379|gb|EEO12339.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
Length = 478
Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 11 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 70
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 71 ITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 130
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 131 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 190
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 191 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 250
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 251 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 310
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 311 ILAPAKTLTSENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 370
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 371 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 430
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 431 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477
>gi|90415078|ref|ZP_01223036.1| putative exonuclease I [Photobacterium profundum 3TCK]
gi|90323813|gb|EAS40426.1| putative exonuclease I [Photobacterium profundum 3TCK]
Length = 474
Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats.
Identities = 227/465 (48%), Positives = 305/465 (65%), Gaps = 3/465 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T DYETFG A DR QFAGVR D + I V +CKP DYLP PEA IT
Sbjct: 6 TPTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGEPLVIYCKPPVDYLPSPEACLIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+A G+ E EF +IH S PNTC+IGYNN+RFDD +R YRNFYD Y W
Sbjct: 66 GITPQEAQEKGLSEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWG 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLD+MR YA P+G+ WP+ D+G SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ L +++ +PKLF YL+D R+K +L++L+DI N+TPLVHVSGMFG NT+ I
Sbjct: 186 YATIELAKILKTNQPKLFNYLFDLRHKRKLQELVDIVNLTPLVHVSGMFGVGCGNTSWIV 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
P+AWHP K++VI NL+ D +LD+ Q+ +R++T ELK +P+P+K VHLNKC
Sbjct: 246 PMAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
P+L P K E R GID +CL+NL +L++ +R++ AI+ + + DVDS
Sbjct: 306 PVLAPAKTLKAEDANRIGIDRAQCLKNLQILKEHPEIREKLVAIFAVQREYKENTDVDSM 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF++ DR +D I + PE L+ + L D+R+ L FRYRARNFP TL+ +E+Q
Sbjct: 366 LYDGFFSNSDRSSIDIIRESTPEALAEIQLNVEDKRIKPLLFRYRARNFPLTLNYEEQQK 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
W H + + + Y ++++ E + +E K ++ ALY+Y+
Sbjct: 426 WKHHCQD-FFQDNLPAYMENFEAVATENQSNEHKMKILKALYDYI 469
>gi|327483926|gb|AEA78333.1| Exodeoxyribonuclease I [Vibrio cholerae LMA3894-4]
Length = 474
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|330829787|ref|YP_004392739.1| exodeoxyribonuclease I [Aeromonas veronii B565]
gi|328804923|gb|AEB50122.1| Exodeoxyribonuclease I [Aeromonas veronii B565]
Length = 471
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 213/467 (45%), Positives = 310/467 (66%), Gaps = 2/467 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F +DYETFG A DRP+QFAG+R D + I V +CKP DYLPDPEA IT
Sbjct: 6 NPTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD +R YRNFYD Y +S
Sbjct: 66 GITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYS 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+LD++RA YA P+GI+W D+G SF+L+ L + NG+ H NAHDA +DV
Sbjct: 126 WQNGNSRWDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTVGNGVAHANAHDALSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ + L+++ +PKLF YL+D RNKN+++ LID+ M PLVHVSGMF + + ++
Sbjct: 186 LATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVS 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWHP +++VI +L+ D +L S ++ +RL+T +EL L +P+K VH+NKCP
Sbjct: 246 PLAWHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQL 360
+L P E + GI+ ++C ++L LLR +R++ ++N+ + S+ D D+QL
Sbjct: 306 VLAPAATLTAERADELGINREQCRKSLDLLRAHPEVREKLVEVFNQEFAGSNESDPDTQL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W
Sbjct: 366 YAGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
H +R R+ +Y +L++L+ + + +E ++ +LY YL+ +
Sbjct: 426 RLHCSDYFSR-RLPDYVPRLEALAEQNQSNERNFAILKSLYHYLEDL 471
>gi|153826959|ref|ZP_01979626.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
gi|149739207|gb|EDM53479.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
Length = 474
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|229521349|ref|ZP_04410768.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
gi|229341447|gb|EEO06450.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
Length = 478
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 11 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 70
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 71 ITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 130
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 131 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 190
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 191 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 250
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 251 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 310
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 311 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 370
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 371 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 430
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 431 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477
>gi|86146813|ref|ZP_01065133.1| exonuclease I [Vibrio sp. MED222]
gi|218709702|ref|YP_002417323.1| exonuclease I [Vibrio splendidus LGP32]
gi|85835463|gb|EAQ53601.1| exonuclease I [Vibrio sp. MED222]
gi|218322721|emb|CAV18897.1| Exodeoxyribonuclease I [Vibrio splendidus LGP32]
Length = 474
Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats.
Identities = 226/468 (48%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT
Sbjct: 7 PTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITR 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAASQGLPEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA++A P+GI WP ++G SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PK+F+YLY+ R+K +L L+DI NMTPL+HVSGMFG + T+ I P
Sbjct: 187 ATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ D +LD+ +L RL+T EL + +PVPIK V LNKCP
Sbjct: 247 MAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELSEDELPVPIKLVQLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQL 360
IL P E+ E GID ++CL+NL LLR+ +R++ +Y++ S DVD+ L
Sbjct: 307 ILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M+ I T P L+ L++ FSD R+ L FRYRARNFP TL E E+ W
Sbjct: 367 YDGFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARNFPWTLDEAEQLKW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ R+EEY L++L+ E++ DE K ++ A+Y+Y++ +
Sbjct: 427 ANHCRE-FYECRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLA 473
>gi|254226438|ref|ZP_04920025.1| exodeoxyribonuclease I [Vibrio cholerae V51]
gi|125621060|gb|EAZ49407.1| exodeoxyribonuclease I [Vibrio cholerae V51]
Length = 474
Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YTGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|54308882|ref|YP_129902.1| exonuclease I [Photobacterium profundum SS9]
gi|46913312|emb|CAG20100.1| putative exonuclease I [Photobacterium profundum SS9]
Length = 474
Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats.
Identities = 227/464 (48%), Positives = 304/464 (65%), Gaps = 3/464 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
DYETFG A DR QFAGVR D + I V +CKP DYLP PEA ITG
Sbjct: 7 PTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGKPLVIYCKPPVDYLPSPEACLITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G+ E EF +IH S PNTC+IGYNN+RFDD +R YRNFYD Y W W
Sbjct: 67 ITPQEAQEKGLPEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWGW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLD+MR YA P+G+ WP+ D+G SFKL+ L++ANGIEH NAHDA ADVY
Sbjct: 127 QNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L +++ +PKLF YL+D R+K +L++LIDI N+TPLVHVSGMFG NT+ I P
Sbjct: 187 ATIELAKILKTNQPKLFNYLFDLRHKRKLQELIDIVNLTPLVHVSGMFGVGCGNTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
+AWHP K++VI NL+ D +LD+ Q+ +R++T ELK +P+P+K VHLNKCP
Sbjct: 247 MAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
+L P K E +R GID +CL+NL +L++ +R++ AI+ + + DVDS L
Sbjct: 307 VLAPAKTLKAEDADRIGIDRAQCLKNLQILKEHPEVREKLVAIFAVQREYKENTDVDSML 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ DR +D I + PE L+ + L D+R+ L FRYRARNFP TL+ +E+Q W
Sbjct: 367 YDGFFSTSDRSSIDIIRESTPEALAEIKLNVEDKRIKPLLFRYRARNFPMTLNYEEQQKW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
H + + + Y ++++ E + +E K ++ ALY+Y+
Sbjct: 427 KHHCQD-FFQDNLPAYMENFEAVATENQSNEHKMKILKALYDYI 469
>gi|153801904|ref|ZP_01956490.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
gi|124122549|gb|EAY41292.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
Length = 474
Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 307/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QRGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQERGFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|153212250|ref|ZP_01948038.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
gi|124116628|gb|EAY35448.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
Length = 474
Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 219/468 (46%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +L++ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELNAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|229505177|ref|ZP_04394687.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
gi|229511152|ref|ZP_04400631.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|229518270|ref|ZP_04407714.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
gi|229608197|ref|YP_002878845.1| exonuclease I [Vibrio cholerae MJ-1236]
gi|229344985|gb|EEO09959.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
gi|229351117|gb|EEO16058.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|229357400|gb|EEO22317.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
gi|229370852|gb|ACQ61275.1| exodeoxyribonuclease I [Vibrio cholerae MJ-1236]
Length = 478
Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 11 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 70
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 71 ITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 130
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 131 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 190
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 191 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 250
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 251 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 310
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 311 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 370
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 371 YAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRRW 430
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 431 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477
>gi|254362095|ref|ZP_04978217.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
gi|153093654|gb|EDN74613.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
Length = 515
Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 225/476 (47%), Positives = 307/476 (64%), Gaps = 6/476 (1%)
Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M++ F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV
Sbjct: 1 MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGITPQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y
Sbjct: 61 MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+SW NGNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
+DVYAT+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA
Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
+ P+AWH +++VI C+LSGDM ++ L +RL+T DEL + +PVP+K VH+
Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELPVPLKLVHI 300
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQD 355
NKCPIL P E+ ER GID CLENL L+ Q +L R++ I+N+ S +
Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
V++ LYDGFF+ D+ M + PE L+ L F D R+ L F YRAR++P TLS
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420
Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
E+ W +H + + ++ ++ + L ++ + K L+ L Y + + ++
Sbjct: 421 EQIKWQKHCNQQI-EAKAAQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475
>gi|229525835|ref|ZP_04415240.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
gi|229339416|gb|EEO04433.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
Length = 478
Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 221/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 11 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 70
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 71 ITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 130
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 131 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 190
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 191 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVP 250
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 251 IAWHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 310
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 311 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 370
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 371 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 430
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 431 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 477
>gi|229529683|ref|ZP_04419073.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
gi|229333457|gb|EEN98943.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
Length = 478
Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats.
Identities = 219/468 (46%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 11 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 70
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 71 ITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 130
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ +++ANGIEH NAHDA ADV
Sbjct: 131 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHISVANGIEHSNAHDAMADVI 190
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 191 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 250
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 251 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 310
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 311 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQDSDVDSQL 370
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 371 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 430
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 431 AAHCRDYFERN-LEGYMVNLENLVHEHQADPKKMAILKSVYHYVEKLA 477
>gi|297578829|ref|ZP_06940757.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
gi|297536423|gb|EFH75256.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
Length = 474
Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 307/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTGLIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|153829736|ref|ZP_01982403.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
gi|262191424|ref|ZP_06049612.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
gi|148874770|gb|EDL72905.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
gi|262032713|gb|EEY51263.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
Length = 474
Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|261494569|ref|ZP_05991051.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309760|gb|EEY10981.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 515
Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats.
Identities = 225/476 (47%), Positives = 307/476 (64%), Gaps = 6/476 (1%)
Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M++ F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV
Sbjct: 1 MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGITPQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y
Sbjct: 61 MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+SW NGNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
+DVYAT+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA
Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
+ P+AWH +++VI C+LSGDM ++ L +RL+T DEL + + VP+K VH+
Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHI 300
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQD 355
NKCPIL P E+ ER GID CLENL L+ Q +L R++ I+N+ S +
Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
V++ LYDGFF+ D+ M + PE L+ L F D R+ L F YRAR++P TLS
Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420
Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
E+ W +H + + ++ E++ + L ++ + K L+ L Y + + ++
Sbjct: 421 EQIKWQKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475
>gi|15641247|ref|NP_230879.1| exonuclease I [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591211|ref|ZP_01678513.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
gi|121728822|ref|ZP_01681834.1| exodeoxyribonuclease I [Vibrio cholerae V52]
gi|147674379|ref|YP_001216801.1| exonuclease I [Vibrio cholerae O395]
gi|153819174|ref|ZP_01971841.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
gi|153823017|ref|ZP_01975684.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|227081406|ref|YP_002809957.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
gi|254848359|ref|ZP_05237709.1| exonuclease I [Vibrio cholerae MO10]
gi|255745633|ref|ZP_05419581.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
gi|262159091|ref|ZP_06030203.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
gi|262169449|ref|ZP_06037141.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
gi|298498672|ref|ZP_07008479.1| exonuclease I [Vibrio cholerae MAK 757]
gi|9655715|gb|AAF94393.1| exodeoxyribonuclease I [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121546936|gb|EAX57085.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
gi|121628910|gb|EAX61366.1| exodeoxyribonuclease I [Vibrio cholerae V52]
gi|126510260|gb|EAZ72854.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
gi|126519445|gb|EAZ76668.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|146316262|gb|ABQ20801.1| exodeoxyribonuclease I [Vibrio cholerae O395]
gi|227009294|gb|ACP05506.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
gi|227013151|gb|ACP09361.1| exodeoxyribonuclease I [Vibrio cholerae O395]
gi|254844064|gb|EET22478.1| exonuclease I [Vibrio cholerae MO10]
gi|255736708|gb|EET92105.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
gi|262022262|gb|EEY40971.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
gi|262029276|gb|EEY47928.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
gi|297543005|gb|EFH79055.1| exonuclease I [Vibrio cholerae MAK 757]
Length = 474
Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|261492018|ref|ZP_05988593.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261312301|gb|EEY13429.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 515
Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats.
Identities = 225/476 (47%), Positives = 307/476 (64%), Gaps = 6/476 (1%)
Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M++ F YDYE+FG ALDRPAQFAG+R D + I +FFCK DYLP PEAV
Sbjct: 1 MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAV 60
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGITPQ+ +GV E EF+ RIH FS NTC IGYNNIR+DD +R F+RNFYD Y
Sbjct: 61 MVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPY 120
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+SW NGNSRWDLLD++RA YA PDGI+WP+ + G SFKL++L ANGI H NAHDA
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAM 180
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
+DVYAT+A+ LI++K+PKLF++ ++ R+K ++ KLID MTPLVHVSGM G R NTA
Sbjct: 181 SDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTA 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
+ P+AWH +++VI C+LSGDM ++ L +RL+T DEL + + VP+K VH+
Sbjct: 241 WVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHI 300
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQD 355
NKCPIL P E+ ER GID CLENL L+ Q +L R++ I+N+ S +
Sbjct: 301 NKCPILAPAKTLLPENAERLGIDRALCLENLKTLKAQKSLIREKVIEIFNEERTFEPSTN 360
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
V++ LYDGFF+ D+ M + PE L+ L F D R+ L F YRAR++P TLS
Sbjct: 361 VENTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRA 420
Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
E+ W +H + + ++ E++ + L ++ + K L+ L Y + + ++
Sbjct: 421 EQIKWQKHCNQQI-EAKAEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQ 475
>gi|254291686|ref|ZP_04962473.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
gi|150422370|gb|EDN14330.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
Length = 474
Score = 708 bits (1829), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP DDG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLF+Y + R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRDRHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ ++++ + DVDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF+ DR M+ I TAPE L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LEGYLLNLENLVHEHQADPKKIAILKSVYHYVEKLA 473
>gi|315180353|gb|ADT87267.1| exonuclease I [Vibrio furnissii NCTC 11218]
Length = 473
Score = 708 bits (1829), Expect = 0.0, Method: Composition-based stats.
Identities = 224/468 (47%), Positives = 305/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G A DRP+QFAGVR D ++ I V +C+ DYLP PEA ITG
Sbjct: 6 PTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPTPEAALITG 65
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I PQKA+ G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 66 IIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSW 125
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G+ WP D+G TSFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 126 QNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADVI 185
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLFEY + R+K +L +LIDI NMTPL+HVSGM G T+ I P
Sbjct: 186 ATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVP 245
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ D + DLD L RL+T HD+L +PVP+K VHLNKCP
Sbjct: 246 IAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E+ GID + CL NL +RQ ++R++ A+++ + +S DVD+QL
Sbjct: 306 ILAPAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M+ I T PE L L++ FSD+R+ L FRYRARNFP TL ++E++ W
Sbjct: 366 YDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIEPLLFRYRARNFPWTLDDEEQRRW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + + + +Y L++L E++ DE K ++ ++Y+Y++ +
Sbjct: 426 ANHCRDYY-ETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLA 472
>gi|145299357|ref|YP_001142198.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142852129|gb|ABO90450.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 475
Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats.
Identities = 214/466 (45%), Positives = 310/466 (66%), Gaps = 2/466 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYETFG A DRP+QFAG+R D + I V +CKP DYLPDPEA ITG
Sbjct: 11 PTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITG 70
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA++DG+ EA+F R+IH+ F+ PNTC++GYN+IRFDD +R YRNFYD Y ++W
Sbjct: 71 ITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAW 130
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD+LD++RA YA P+GI+W ++G SF+L+ L +ANG+ H NAHDA +DV
Sbjct: 131 QNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFRLEKLTVANGVSHANAHDALSDVL 190
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + L+++ +PKLFEYL+ RNKN+++ LID+ M PLVHVSGMF + + I+P
Sbjct: 191 ATIEMAKLVKKAQPKLFEYLFTLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCVSWISP 250
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+ D +L S ++ +RL+T DEL L +P+K VH+NKC +
Sbjct: 251 LAWHPTNQNAVIMVDLTRDPTPLIELSSEEIRERLYTRKDELGDLAAIPVKLVHINKCRV 310
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQLY 361
L P E + ID ++C ++L LLR +R++ ++N+ + S+ D D+QLY
Sbjct: 311 LAPAATLTPERADELTIDREQCRKSLNLLRAHPEVREKLVEVFNQEFEGSNDPDPDTQLY 370
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF D+ MD + T + L F+D RLPE+ FRYRARN+PHTLSE E++ W
Sbjct: 371 AGFFGHGDKSTMDLVRATPADLLGEREFAFTDARLPEMLFRYRARNWPHTLSEAEQKRWR 430
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
H +R R+ +Y +L++L+ + +G+E ++ +LY YL+ +
Sbjct: 431 LHCSDYFSR-RLPDYAPRLEALAEQNQGNERNFAILKSLYRYLEDL 475
>gi|262402419|ref|ZP_06078980.1| exodeoxyribonuclease I [Vibrio sp. RC586]
gi|262351201|gb|EEZ00334.1| exodeoxyribonuclease I [Vibrio sp. RC586]
Length = 474
Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats.
Identities = 221/468 (47%), Positives = 311/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA YA P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVIRACYALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIMVDLGKDPQPLLDLDADALQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQL
Sbjct: 307 ILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+ DR M+ I T+P+ L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YEGFFSPADRAAMEIIRTTSPDNLGSLEIKVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473
>gi|257464641|ref|ZP_05629012.1| exonuclease I [Actinobacillus minor 202]
gi|257450301|gb|EEV24344.1| exonuclease I [Actinobacillus minor 202]
Length = 514
Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats.
Identities = 223/467 (47%), Positives = 312/467 (66%), Gaps = 4/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG + A+DRPAQFAG+R D Q+ I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVNPAIDRPAQFAGIRTDEQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
PQ+ +G+ E EF+ RIH FS PNTC+IGYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLDV+RA YA P+GI+W + ++G +FKL++L ANGI H NAHDA +DVYA
Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIEWVTDEEGIPNFKLENLTKANGISHENAHDAMSDVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R NTA + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP +++VI C+LSGD++ + S L RL+T EL + PVP+K VH+NKCPI
Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
L P E+ R GID ++CLENL L+ Q +L R++ I+ + + S +V++ L
Sbjct: 306 LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + APE+L+ L F+D R+ +L F YRAR++P TL+ E+ W
Sbjct: 366 YDGFFSQADKNNMSILRSLAPEELAHHGLQFADPRVEKLLFHYRARHYPETLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L SR E++ +++L + DE K L+ L Y+ +
Sbjct: 426 QKYCHQQL-DSRAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQI 471
>gi|284007268|emb|CBA72582.1| exodeoxyribonuclease I [Arsenophonus nasoniae]
Length = 474
Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats.
Identities = 241/467 (51%), Positives = 328/467 (70%), Gaps = 1/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG+ ALDRPAQFAG+R D + IE ++F+C PADDYLP P+AV ITG
Sbjct: 7 SSFLFHDYETFGQHPALDRPAQFAGIRTDSNFNIIEDPQIFYCAPADDYLPQPQAVMITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A+ G+ EAEF++RIH FS+ N+CI+GYNNIRFDD +R+IFYRNFYD Y +SW
Sbjct: 67 ITPQYAIAHGINEAEFAKRIHGIFSIANSCILGYNNIRFDDEVTRHIFYRNFYDPYAYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDV+RA YA PDGI WPS D+G SFKL+ L + NGIEH NAHDA ADV
Sbjct: 127 QQGNSRWDLLDVLRACYALRPDGINWPSNDEGLPSFKLEHLTVVNGIEHANAHDATADVL 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LI++ +PK+F+Y + RNKN++++LIDI MTPLVHVSGMFGA R+NT+LIAP
Sbjct: 187 ATIEMAKLIKQAQPKMFDYFFRLRNKNEVKQLIDIIAMTPLVHVSGMFGAIRANTSLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++++I C+L+ D+ LDS L +RL+T DEL G + +PIK +H+NKCPI
Sbjct: 247 LAWHPENRNAIIACDLAADISPLLTLDSDTLRQRLYTPKDELAGELAIPIKLIHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLY 361
L P + + +R +D C NL +LRQ + +RD+ ++ + ++ DVD+ LY
Sbjct: 307 LAPANTLRTADAQRIALDLDVCQNNLAILRQHSEVRDKVIRLFTEAQPFPAATDVDAMLY 366
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF D DR M I +T P+ L L+L F D R+ +LFFRYRARN+P TL+E+E+ WL
Sbjct: 367 SGFFGDNDRSTMAIIRQTLPQNLPALDLKFDDPRMRQLFFRYRARNYPATLTEQEQLAWL 426
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
HR+ LT +I +Y ++ L E++ ++ K + AL +Y +
Sbjct: 427 HHRRDRLTCEKISQYLQTIEQLFAEHQENKEKCQQLKALVDYANQIA 473
>gi|260768651|ref|ZP_05877585.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
gi|260616681|gb|EEX41866.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
Length = 473
Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats.
Identities = 224/468 (47%), Positives = 305/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G A DRP+QFAGVR D ++ I V +C+ DYLP PEA ITG
Sbjct: 6 PTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITG 65
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I PQKA+ G+ E EF +IH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 66 IIPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSW 125
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+G+ WP D+G TSFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 126 QNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADVI 185
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PKLFEY + R+K +L +LIDI NMTPL+HVSGM G T+ I P
Sbjct: 186 ATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVP 245
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ D + DLD L RL+T HD+L +PVP+K VHLNKCP
Sbjct: 246 IAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E+ GID + CL NL +RQ ++R++ A+++ + +S DVD+QL
Sbjct: 306 ILAPAKTLTAENAATIGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M+ I T PE L L++ FSD+R+ L FRYRARNFP TL ++E++ W
Sbjct: 366 YDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIDPLLFRYRARNFPWTLDDEEQRRW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + + + +Y L++L E++ DE K ++ ++Y+Y++ +
Sbjct: 426 ANHCRDYY-ETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLA 472
>gi|312884477|ref|ZP_07744181.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367789|gb|EFP95337.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
Length = 474
Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats.
Identities = 230/468 (49%), Positives = 303/468 (64%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP QFAGVR DR + I V +C+P +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGTNPATDRPCQFAGVRTDRDFNIIGEPVVLYCQPPNDYLPSPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA +G++E EF +IH+ + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAQAEGLIEPEFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA +A P+GI WP D+G SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRACHALRPEGINWPQNDEGFPSFKLEHLSVANGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + I +PKLF+Y D R+K +L LIDI NMTPL+HVSGM G T+ I P
Sbjct: 187 ATIEMAKKISVAQPKLFQYFLDMRHKRKLNDLIDIVNMTPLMHVSGMLGKECQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNKCP 301
VAWHP +++VI +L+ D DL++ QL +RL+T EL V PIK VHLNK P
Sbjct: 247 VAWHPTNQNAVICIDLARDPSAIFDLNAQQLHERLYTKRSELNDKEVSAPIKLVHLNKSP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P E +R GID + CLENL +LR +R++ +Y+ + S DVD+ L
Sbjct: 307 ILAPAKTLTAEDAQRIGIDREACLENLAMLRNHPEIREKLIGVYSIEREFKKSSDVDAML 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF D+ M I T PE LSTL++ F D R+ +L FRYRARNFP TLSE E+Q W
Sbjct: 367 YDGFFNPADKTAMKIIRETDPECLSTLDISFDDERISKLLFRYRARNFPWTLSEPEQQKW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H ++ RIE+Y L++L E++ + ++ ++Y++++ ++
Sbjct: 427 ANHCREYF-EQRIEDYMLNLENLVHEHEQCPKQMAILKSIYQHVETLV 473
>gi|262165491|ref|ZP_06033228.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
gi|262025207|gb|EEY43875.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
Length = 474
Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 312/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ E+ GID ++CL +L ++RQ +R++ +++++ + +VDSQL
Sbjct: 307 ILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVSVFSQEREFAKENNVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+ DR M+ I T+P+ L +L + +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473
>gi|303250424|ref|ZP_07336622.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307252223|ref|ZP_07534120.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302650750|gb|EFL80908.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306860145|gb|EFM92161.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 514
Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats.
Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ ++ + SL + + K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|258620230|ref|ZP_05715269.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
gi|258587588|gb|EEW12298.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
Length = 474
Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 312/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQL
Sbjct: 307 ILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473
>gi|59712089|ref|YP_204865.1| exonuclease I [Vibrio fischeri ES114]
gi|59480190|gb|AAW85977.1| exonuclease I [Vibrio fischeri ES114]
Length = 474
Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats.
Identities = 222/469 (47%), Positives = 302/469 (64%), Gaps = 3/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA IT
Sbjct: 6 APSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WS
Sbjct: 66 GITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWS 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDVMRA+YA P+GI WP ++G SFKL++L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ L +++ +PK+F YL RNK + LIDI MTPL+HVSGMFG R N + I
Sbjct: 186 IATIELAKKVKQAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIV 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVAWHP ++VI +L+ D VF +L+ +L +R++T EL +PVP+K VHLNKC
Sbjct: 246 PVAWHPTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLVHLNKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
P+L P E+ +D + CL NL ++R+ +R + +Y+ +P S +VD+
Sbjct: 306 PVLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTL 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+ D+ +D I ++ PEQL +D R+ L FRYRARNFPHTL+E E+
Sbjct: 366 LYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W H + ++ + +Y+ ++L E +G++ K ++ A+Y Y+Q +I
Sbjct: 426 WHAHLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLI 473
>gi|330446032|ref|ZP_08309684.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490223|dbj|GAA04181.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 473
Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats.
Identities = 227/467 (48%), Positives = 307/467 (65%), Gaps = 3/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGI
Sbjct: 8 TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+A+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W
Sbjct: 68 TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD+MR YA PDG+ WP D+ SFKL+ L++ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDIMRTCYALRPDGLNWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ L +++ +PKLF+YL+D R+K +L+ L+DI N+TPLVH+SGMFG NT+ I P+
Sbjct: 188 TIELAKIVKTNQPKLFDYLFDLRHKRKLQDLVDIVNLTPLVHISGMFGTDCGNTSWIVPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP K++VI NL+ D +LD+ QL +RL+T +L +PVPIKEVHLNKCP+
Sbjct: 248 AWHPDNKNAVITVNLALDPTPLIELDADQLRERLYTKRIDLAPDELPVPIKEVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P K E R GID ++CL++L L++Q +R++ +++ K ++ +VD+ LY
Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKHLALIKQHPEIREKVLEMFSVKREYDANDNVDAMLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T +QL +L + D+R+ L FRYRARNFP TLS +E+ W
Sbjct: 368 DGFFSTADRSTMDIIRETPADQLGSLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + + + +Y ++++ EY+ DE K ++ +LY+Y+ ++
Sbjct: 428 HHCQD-FFEANMPKYMENFEAVAYEYESDENKMKILKSLYDYVSKLV 473
>gi|190149982|ref|YP_001968507.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307263310|ref|ZP_07544928.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|189915113|gb|ACE61365.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871372|gb|EFN03098.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 514
Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 308/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+V LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMVKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ ++ + SL + + K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|197335521|ref|YP_002156294.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
gi|197317011|gb|ACH66458.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
Length = 474
Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats.
Identities = 222/469 (47%), Positives = 301/469 (64%), Gaps = 3/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA IT
Sbjct: 6 APSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WS
Sbjct: 66 GITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWS 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDVMRA+YA P+GI WP ++G SFKL++L++ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHDAMADV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ L ++E +PK+F YL RNK + LIDI MTPL+HVSGMFG R N + I
Sbjct: 186 IATIELAKKVKEAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGNISWIV 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVAWHP ++VI +L+ D VF L+ +L +R++T +L +PVP+K VHLNKC
Sbjct: 246 PVAWHPTNNNAVITIDLALDPSVFLKLNVEELHQRMYTKRSDLGPDELPVPVKLVHLNKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
P+L P E+ +D + CL NL ++R+ +R + +Y+ +P S +VD+
Sbjct: 306 PVLAPAKTLTAENAANLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTL 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+ D+ +D I ++ PEQL +D R+ L FRYRARNFPHTL+E E+
Sbjct: 366 LYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPHTLNEAEQLR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W H + ++ + +Y+ ++L E +G++ K ++ A+Y Y+Q +I
Sbjct: 426 WHAHLQDYF-QTHLPDYEASFENLYLESEGNDKKVAILKAVYNYVQQLI 473
>gi|303252408|ref|ZP_07338574.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307247643|ref|ZP_07529685.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|302648867|gb|EFL79057.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306855855|gb|EFM88016.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
Length = 514
Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats.
Identities = 219/468 (46%), Positives = 306/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P +L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ ++ + SL + + K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|293395284|ref|ZP_06639569.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
gi|291422241|gb|EFE95485.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
Length = 453
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 244/451 (54%), Positives = 327/451 (72%), Gaps = 2/451 (0%)
Query: 20 DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFS 79
DRPAQFAGVR D + IE V +C PADDYLPDPEAV ITGITPQ+AL GV EAEF+
Sbjct: 2 DRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPEAVMITGITPQEALAKGVCEAEFA 61
Query: 80 RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIY 139
R+IHQ FSVP TCI+GYNNIRFDD SRNIFYR+FYD Y +SW NGNSRWDLLDVMRA Y
Sbjct: 62 RQIHQAFSVPGTCIVGYNNIRFDDEVSRNIFYRSFYDPYAYSWQNGNSRWDLLDVMRACY 121
Query: 140 AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLF 199
A P+GI WP DDG SF+L+ L ANG+ H AHDA +DV+AT+A+ L+R+ +P+LF
Sbjct: 122 ALRPEGIVWPENDDGFPSFRLEHLTRANGVAHEQAHDAMSDVHATIAMAKLVRQAQPRLF 181
Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259
+YL +RNK++L L+DI MTPLVHVSGMFGA+RSNT+ +AP+AWHP K+++I C+L+
Sbjct: 182 DYLLQHRNKHKLNALVDIAEMTPLVHVSGMFGAARSNTSWVAPLAWHPDNKNALIVCDLA 241
Query: 260 GDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
GDM +LD+ QL +RL+T D L PVPIK VH+NKCP+L P E+ +R G
Sbjct: 242 GDMTPLLELDADQLRERLYTRRDRLSADRPPVPIKLVHINKCPVLAPAKTLLPENADRLG 301
Query: 319 IDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRIL 377
ID + CL NL +LRQ +R++ A+Y ++S DVD++LYDGFF+D D+ M I
Sbjct: 302 IDRQACLNNLQILRQHPQVREKVVALYADAEPFAASDDVDARLYDGFFSDADKAAMKIIQ 361
Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYK 437
+T P+ L L+L F+D R+ EL FR+RARN+P+TL + E++ WL+HR+ L+ +++ Y
Sbjct: 362 QTKPQNLPALDLTFNDDRMQELLFRFRARNYPNTLDDGEQRRWLQHRQTALSAEKVQSYV 421
Query: 438 NKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+L++L ++ D K L+ +L++Y + ++
Sbjct: 422 LQLEALYNLHEADSAKLALLKSLFDYGKQLV 452
>gi|307245526|ref|ZP_07527613.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307254482|ref|ZP_07536318.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258940|ref|ZP_07540671.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306853585|gb|EFM85803.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306862532|gb|EFM94490.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866964|gb|EFM98821.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 514
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 219/468 (46%), Positives = 307/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVGPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ ++ + SL + + K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|90578663|ref|ZP_01234473.1| putative exonuclease I [Vibrio angustum S14]
gi|90439496|gb|EAS64677.1| putative exonuclease I [Vibrio angustum S14]
Length = 473
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 230/467 (49%), Positives = 311/467 (66%), Gaps = 3/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGI
Sbjct: 8 TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+A+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W
Sbjct: 68 TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD+MR YA P+G+ WP D+ SFKL+ L++ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDIMRTCYALRPEGVNWPLDDEDRPSFKLEKLSIANGIEHANAHDAMADVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ L +I+ +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG NT+ I PV
Sbjct: 188 TIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPV 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP K++VI NL+ D +LD+ QL +RL+T +L +PVP+KEVHLNKCP+
Sbjct: 248 AWHPDNKNAVITVNLALDPTPLIELDTDQLRERLYTKRVDLAPDELPVPVKEVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQLY 361
L P K E R GID ++CL+NL L++Q +R++ +++ K +++ +VD+ LY
Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMFSVKREYAANDNVDAMLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I TAP+QL++L + D+R+ L FRYRARNFP TLS +E+ W
Sbjct: 368 DGFFSTADRSTMDIIRETAPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + + +Y ++++ E++ DE K ++ +LY+Y+ ++
Sbjct: 428 HHCQD-FFEMNMPKYMENFEAVAYEHESDENKMKVLQSLYDYVSKLV 473
>gi|258624410|ref|ZP_05719357.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
gi|258583257|gb|EEW08059.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
Length = 474
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 219/468 (46%), Positives = 312/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAH+A ADV
Sbjct: 127 QHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHNAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQL
Sbjct: 307 ILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473
>gi|301156280|emb|CBW15751.1| exonuclease I [Haemophilus parainfluenzae T3T1]
Length = 473
Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats.
Identities = 224/473 (47%), Positives = 314/473 (66%), Gaps = 6/473 (1%)
Query: 1 MTNHF--VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M N+F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV
Sbjct: 1 MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAV 60
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGITPQ+ G+ E EF+ +I FS PNTC++GYNNIR+DD +R FYRNF D Y
Sbjct: 61 MVTGITPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPY 120
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+SW NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA
Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAM 180
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
ADVYAT+A+ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R N A
Sbjct: 181 ADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
+AP+AWHP +++VI C+LSGD+ +V L + L+T EL+ G+ +P+K VH
Sbjct: 241 WVAPLAWHPTNQNAVIVCDLSGDINNLLSKSAVDLRQDLYTKKSELEERGVSSIPLKLVH 300
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQD 355
+NKCPIL P E+ R GID + CL+NL LRQ ++R++ I++ + S +
Sbjct: 301 INKCPILAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSGEREFEPSNN 360
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
V+++LY+GFF++ D+ M + E+L+ L F D+R+PEL F YRAR+F TL+
Sbjct: 361 VETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLNRA 420
Query: 416 EKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
E+ W ++R++ L +S + +++ LQ L+ EY + K L+ +YEY ++
Sbjct: 421 EQIKWQKYRQRKLEQSAV-KFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLL 472
>gi|262171739|ref|ZP_06039417.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
gi|261892815|gb|EEY38801.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
Length = 474
Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats.
Identities = 219/468 (46%), Positives = 312/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP P+A ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPDAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+GI+WP D+G TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + DLD+ L RL+T +++L +PVP+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ E+ GID ++CL +L ++RQ +R++ ++++ + +VDSQL
Sbjct: 307 ILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+ DR M+ I T+P+ L +L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ DE K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLA 473
>gi|165976088|ref|YP_001651681.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|307256692|ref|ZP_07538471.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|165876189|gb|ABY69237.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|306864740|gb|EFM96644.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 514
Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats.
Identities = 218/468 (46%), Positives = 305/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ + + L + + K L+ L Y +
Sbjct: 426 QKYCHQQIDAKSVQ-FAEAIDILFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
102761]
gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
102761]
Length = 473
Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats.
Identities = 226/467 (48%), Positives = 305/467 (65%), Gaps = 3/467 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
DYETFG A DRP QFAG+R D I V +CKP DYLP PEA ITG
Sbjct: 7 PSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPEACLITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G+ E EF RIH+ S PNTC++GYNN+RFDD +R YRNFYD Y WSW
Sbjct: 67 ITPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYDPYGWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLD+MR YA PDGI WP+ D+G SFKL+ L++ANGIEH NAHDA ADVY
Sbjct: 127 QQGNSRWDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIEHSNAHDAMADVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + L+++ +PKLF+YL++ R+KN+L++LID+ N+TPLVHV+GMFG NT+ I P
Sbjct: 187 ATIEMAKLVKQNQPKLFDYLFNNRHKNKLQQLIDVVNLTPLVHVTGMFGTVCGNTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP K++VI NL+ D +LDS + RL+T +L +P+P+KEVHLNKCP
Sbjct: 247 IAWHPDNKNAVITINLAQDPTPLIELDSETIRTRLYTKRADLAADELPIPLKEVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQL 360
IL P +R ID ++CL+NL L++Q +R++ +++ K + +VD+ L
Sbjct: 307 ILAPAKTLTANDADRLDIDREQCLKNLALIKQHPEIREKVLEVFSVKREFDNHDNVDAML 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ DR MD I TAPE+L+ L L +D+R+ L FRYRARNFP TLS +E+ W
Sbjct: 367 YDGFFSHADRVAMDIIRETAPEELANLQLEVADKRIKPLLFRYRARNFPMTLSYEEQTRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
H + + I Y + ++ + + DE K +++ L +Y+ +
Sbjct: 427 KHHCQDYF-EANIPRYMENFEQVALDNQSDENKMAILHKLGQYISTL 472
>gi|325578381|ref|ZP_08148516.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
gi|325160117|gb|EGC72246.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
Length = 473
Score = 703 bits (1816), Expect = 0.0, Method: Composition-based stats.
Identities = 222/468 (47%), Positives = 310/468 (66%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGINPASDRPAQFAGIRTDANFNIIGEPVMLYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ +I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF++ +++R K ++ KL+D MTPLVHVSGM G R N A +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLLDTAEMTPLVHVSGMLGNYRGNCAWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP +++VI C+LSGD+ +V L + L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ R GID + CL+NL LRQ ++R++ I+++ S +V+++L
Sbjct: 306 ILAPAKTLLPENAARLGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+ D+ M + E+L+ L F D+R+PEL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSSADKNNMAILRDLPAEKLAGHGLAFEDKRIPELLFHYRARHFYKTLNRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++R++ L +S + +++ LQ L+ EY + K L+ +YEY ++
Sbjct: 426 QKYRQRKLEQSAV-KFEESLQQLAEEYSDNPTKLNLLQQVYEYGAKLL 472
>gi|209695175|ref|YP_002263104.1| exonuclease I [Aliivibrio salmonicida LFI1238]
gi|208009127|emb|CAQ79365.1| exodeoxyribonuclease I [Aliivibrio salmonicida LFI1238]
Length = 474
Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats.
Identities = 226/469 (48%), Positives = 303/469 (64%), Gaps = 3/469 (0%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F +DYET+G +LDRP QFAGVR D + I V +C+P DYLP PEA IT
Sbjct: 6 APSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPEACLIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A+ G+ E EF +IH S PNTC +GYNNIRFDD SR YRNF++ Y WS
Sbjct: 66 GITPQMAVSKGLSEPEFIAQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWS 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDVMRA+YA P+GI+WP ++G SF+L+ L+ ANGIEH NAHDA ADV
Sbjct: 126 WQNGNSRWDLLDVMRAVYALRPEGIEWPKDEEGKPSFRLEKLSQANGIEHENAHDAMADV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ L ++++ +PK+F YL R+K + LIDI MTPL+HVSGMFG R N + I
Sbjct: 186 IATIELAKVVKKAQPKMFNYLLSMRHKKKAATLIDIIEMTPLMHVSGMFGVDRGNISWIV 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVAWHP ++VI +L+ D VF +LD+ QL +R++T EL +PVP+K VHLNKC
Sbjct: 246 PVAWHPTNNNAVITIDLALDPAVFLELDAEQLHQRMYTKRSELGPDELPVPVKLVHLNKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
PIL P E+ +D + CL NL ++R+ +R + +YN +P S +VD+
Sbjct: 306 PILAPAKTLTAENAIALNVDREACLRNLKVIRENPEIRQKLIDLYNIEPGYEKSSNVDTL 365
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGFF+ D+ +D I ++ PEQL SD R+ L FRYRARNFPHTL+E E+
Sbjct: 366 LYDGFFSHADKTAIDMIRQSTPEQLIDFEPNVSDPRIKPLLFRYRARNFPHTLNESEQLR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W H + + + +Y+ + +SL E +G+E K ++ A+Y Y+Q ++
Sbjct: 426 WQAHLQDYF-ETHMSDYETRFESLYLESEGNEKKTAILRAVYNYVQQLV 473
>gi|260772965|ref|ZP_05881881.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
gi|260612104|gb|EEX37307.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
Length = 480
Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats.
Identities = 224/468 (47%), Positives = 305/468 (65%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F DYET+G A DRP+QFAGVR D + I V +C+ DYLP PEA ITG
Sbjct: 13 QTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPEAALITG 72
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA+ +G+ E EF RIH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 73 ITPQKAMAEGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 132
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDVMRA +A P+GI+WP +G TSFKL+ L+ ANGIEH NAHDA ADV
Sbjct: 133 QQGNSRWDLLDVMRACHALRPEGIEWPENQEGFTSFKLEHLSKANGIEHSNAHDAMADVI 192
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L I+ +PKLF+Y R+K +L L+DI NMTPL+HVSGM G RS T+ + P
Sbjct: 193 ATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRERSYTSWVVP 252
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ + +L S QL +RL+T HD+L +G +P P+K +HLNKCP
Sbjct: 253 IAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLIHLNKCP 312
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ GI+ ++CL +L+ +RQQ LR++ +++ S+S DVDSQL
Sbjct: 313 ILAPAKTLTAENAATIGINREQCLAHLSQIRQQPTLREKLVDVFSAERDFSASSDVDSQL 372
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ DR MD I APE L+ L++ FSD+R+ L FRYRAR++P TL+E E++ W
Sbjct: 373 YDGFFSPSDRAAMDIIRSAAPESLADLDIQFSDQRIAPLLFRYRARHYPWTLNETEQRRW 432
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + ++ Y L++L +++ D K ++ A+Y Y++ +
Sbjct: 433 ASHCQDYFAT-QLPSYMLNLENLVEQHQHDAKKIAILKAVYHYVEALA 479
>gi|53729178|ref|ZP_00134021.2| COG2925: Exonuclease I [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208153|ref|YP_001053378.1| exonuclease I [Actinobacillus pleuropneumoniae L20]
gi|126096945|gb|ABN73773.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
Length = 514
Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats.
Identities = 217/468 (46%), Positives = 305/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFA +R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFACIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL + + PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEAVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P++L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ ++ + SL + + K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|261211043|ref|ZP_05925333.1| exodeoxyribonuclease I [Vibrio sp. RC341]
gi|260840018|gb|EEX66618.1| exodeoxyribonuclease I [Vibrio sp. RC341]
Length = 474
Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats.
Identities = 217/468 (46%), Positives = 309/468 (66%), Gaps = 3/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + A DRP+QFAGVR D + I V +C+ +DYLP PEA ITG
Sbjct: 7 PTFFFFDYETWGVNPAKDRPSQFAGVRTDIDFNIIGEPLVIYCQLPNDYLPAPEAALITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF RIH S P T +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKANSLGLPEPEFIARIHAELSTPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLLDV+RA +A P+G++WP +DG TSFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QHGNSRWDLLDVIRACHALRPEGMKWPENEDGFTSFKLERLSVANGIEHSNAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L I+ +PKLF+Y ++ R+K +L +LIDI N TPL+HVSGM G R T+ I P
Sbjct: 187 ATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L D + +LD+ L RL+T +++L +P+P+K VHLNKCP
Sbjct: 247 IAWHPTNQNAVIVVDLGKDPQPLLELDAEALQARLYTHYEDLAPDELPIPVKLVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ ++ GID ++CL +L ++RQ +R++ +++++ + +VDSQL
Sbjct: 307 ILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPQIREKLVSVFSQEREFAKENNVDSQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ DR MD I T PE L L++ +D+R+ L FRYRAR++PHTL++ E++ W
Sbjct: 367 YDGFFSPADRAAMDIIRTTEPENLGNLDIKVADKRIEPLLFRYRARHYPHTLTDAEQRRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + R+ +E Y L++L E++ D K ++ ++Y Y++ +
Sbjct: 427 AAHCRDYFERN-LESYMLNLENLVHEHQADPKKMAILKSVYHYVEKLA 473
>gi|307249878|ref|ZP_07531852.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306858067|gb|EFM90149.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 514
Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats.
Identities = 218/468 (46%), Positives = 306/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P++L+ L F+ R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMAILRTLPPQELAHHGLQFAGERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ + + SL + + K L+ L Y +
Sbjct: 426 QKYCHQQIDAKSVQ-FAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|89074290|ref|ZP_01160780.1| putative exonuclease I [Photobacterium sp. SKA34]
gi|89049994|gb|EAR55528.1| putative exonuclease I [Photobacterium sp. SKA34]
Length = 473
Score = 701 bits (1811), Expect = 0.0, Method: Composition-based stats.
Identities = 228/467 (48%), Positives = 307/467 (65%), Gaps = 3/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
DYETFG A DRP QFAGVR D I V +CKP DYLP PEA ITGI
Sbjct: 8 TLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+A+ G+ E EF IH S PNTC+IGYNN+RFDD +R YRNF+D Y W+W
Sbjct: 68 TPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAWQ 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD+MR YA P+GI WP D+ SFKL+ L++ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDIMRTCYALRPEGINWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ L +I+ +PKLF+YL+D R+K +L++LIDI N+TPLVH+SGMFG NT+ I P+
Sbjct: 188 TIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVPM 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP K++VI NL+ D +L++ QL RL+T +L +PVP+KEVHLNKCP+
Sbjct: 248 AWHPDNKNTVITVNLALDPTPLIELNADQLRNRLYTKRVDLAPDELPVPVKEVHLNKCPV 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKA-IYNKPYTSSSQDVDSQLY 361
L P K E R GID ++CL+NL L++Q +R++ + K +++ +VD+ LY
Sbjct: 308 LAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMVSVKREYAANDNVDAMLY 367
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGFF+ DR MD I T P+QL++L + D+R+ L FRYRARNFP TLS +E+ W
Sbjct: 368 DGFFSTADRSTMDIIRETTPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSYEEQVRWK 427
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + + +Y ++++ E++ DE K ++ +LY+Y+ ++
Sbjct: 428 HHCQD-FFEMNMTKYMENFEAVAYEHESDESKMKVLQSLYDYVSKLV 473
>gi|240949271|ref|ZP_04753615.1| exonuclease I [Actinobacillus minor NM305]
gi|240296387|gb|EER47031.1| exonuclease I [Actinobacillus minor NM305]
Length = 514
Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats.
Identities = 221/467 (47%), Positives = 309/467 (66%), Gaps = 4/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG + A+DRPAQFAG+R D Q+ I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVNPAVDRPAQFAGIRTDDQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
PQ+ +G+ E EF+ RIH FS PNTC+IGYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLDV+RA YA P+GI W ++G +FKL++L ANGI H NAHDA +DVYA
Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIDWVKDEEGIPNFKLENLTKANGIAHENAHDAMSDVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+++ LI+EK+PKLF++ +++R K ++ KLID MTPLVHVSGM G R NTA + P+
Sbjct: 186 TISMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP +++VI C+LSGD++ + S L RL+T EL + PVP+K VH+NKCPI
Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
L P E+ R GID ++CLENL L+ Q +L R++ I+ + + S +V++ L
Sbjct: 306 LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSDNVETSL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + APE+L+ L F+D R+ +L F YRAR++P TL+ E+ W
Sbjct: 366 YDGFFSQADKNNMSILRSLAPEELAHHGLQFADLRVEKLLFHYRARHYPETLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L R E++ +++L + DE K L+ L Y+ +
Sbjct: 426 QKYCHQQL-DLRAEQFAQSIETLFQIHHDDEEKVKLLEELTAYVAQI 471
>gi|88859960|ref|ZP_01134599.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
gi|88817954|gb|EAR27770.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
Length = 483
Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats.
Identities = 213/472 (45%), Positives = 299/472 (63%), Gaps = 8/472 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+D+ETFG + DRP+QFAGVR D I + +C+PA DYLP P+A ITGI
Sbjct: 12 TIYWHDFETFGANPQKDRPSQFAGVRTDFDLNIIGEPLIIYCQPAPDYLPHPQACLITGI 71
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ AL+ G++EAEF +IHQ F+ PNTC+ GYN+IRFDD SR FYRNFYD Y W
Sbjct: 72 TPQHALKHGMIEAEFIAKIHQEFAKPNTCVAGYNSIRFDDEVSRYAFYRNFYDPYAREWQ 131
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWD++D++RA YA P+GIQWP ++DG SF+L+DL ANGIEH AHDA +DV A
Sbjct: 132 NGNSRWDIIDLVRACYALRPEGIQWPLKEDGTPSFRLEDLTKANGIEHAAAHDALSDVTA 191
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+AL LI++K+PKL+++ + R K + +L DI NM PLVH S AS+ T IAP+
Sbjct: 192 TIALAKLIKDKQPKLYDFFFKLRFKKAVAELFDIYNMVPLVHTSSKIPASQGCTTWIAPM 251
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A+HP K++VI NL+ D R L + ++ RL+T EL + P+ +K VHLNKCPI
Sbjct: 252 AFHPVNKNAVICFNLTHDPRPLLALSADEIRARLYTKRAELAENEQPIGLKLVHLNKCPI 311
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQLY 361
+ P E+ + GID ++CL NL +L+ LR++ ++ ++ + S++ D QLY
Sbjct: 312 VAPAKTLLPENAAKIGIDREQCLANLAILKAHPELREKVAEVFQSENEFAGSENCDYQLY 371
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GF ++ D+ D I P+QL+TL L F D++ L FRYRARN+PHTL+ E + W
Sbjct: 372 AGFTSNADKHKFDIIRAAEPDQLATLGLDFEDKKFDTLLFRYRARNWPHTLTTAELEKWR 431
Query: 422 EHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L +E+ L++L E +G+E ++ ALY Y Q +
Sbjct: 432 KYCQNKLMYGEDSPAIDAQEFMMTLENLVHENEGNERNMTILKALYHYAQNL 483
>gi|307261134|ref|ZP_07542811.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306869164|gb|EFN00964.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 514
Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats.
Identities = 218/468 (46%), Positives = 306/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +T I
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTDI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ RIH FS PNTCI+GYNNIR+DD +R F+RNF+D Y +SW
Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ K+ID MTPLVHVSGMFG +R+NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSGD+ + +L RL+T +EL +G+ PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKP-YTSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERRFEPSANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P +L+ L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ ++ + SL + + K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIA 472
>gi|293389967|ref|ZP_06634301.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290950501|gb|EFE00620.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 475
Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats.
Identities = 215/468 (45%), Positives = 306/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEAV +TGI
Sbjct: 8 SFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ +I Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW
Sbjct: 68 TPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+WP D+G SF+L+ L ANGI H NAHDA +DVYA
Sbjct: 128 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHDAMSDVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + LI++K+PKLF+Y ++ R K ++ KLID MTPLVHVSGM G R NT LIA +
Sbjct: 188 TIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNTTLIASL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
AWHP K++VI C+L+ ++ +L + L+T + L G +PVP+K +H+NKCP
Sbjct: 248 AWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLIHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
I+ P ++ ER GID + C +N L++ ++R + I+++ +S +V+++L
Sbjct: 308 IVAPAKTLLPQNAERLGIDQELCAKNRQRLQEARDIRQKVMDIFHQEREFDASDNVETKL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D D+ M + PE+L+ NL F D R+PEL F YRAR+F TL+ E+ W
Sbjct: 368 YNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQIKW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ +K L ++ ++ +LQ L+ +Y +E L+ +YEY +I
Sbjct: 428 QKYCRKKLDAEALQ-FEQRLQELAEQYSNNEENLMLLQKVYEYGAQII 474
>gi|260582707|ref|ZP_05850495.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
gi|260094273|gb|EEW78173.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
Length = 473
Score = 696 bits (1798), Expect = 0.0, Method: Composition-based stats.
Identities = 224/464 (48%), Positives = 306/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KLID MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLIDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS +L F DRR+PEL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHSLAFEDRRIPELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 QKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|145639026|ref|ZP_01794634.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
gi|145271998|gb|EDK11907.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
gi|309750985|gb|ADO80969.1| Exodeoxyribonuclease I [Haemophilus influenzae R2866]
Length = 473
Score = 696 bits (1798), Expect = 0.0, Method: Composition-based stats.
Identities = 221/464 (47%), Positives = 305/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D +MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|157375752|ref|YP_001474352.1| exonuclease I [Shewanella sediminis HAW-EB3]
gi|157318126|gb|ABV37224.1| Exodeoxyribonuclease I [Shewanella sediminis HAW-EB3]
Length = 470
Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats.
Identities = 211/465 (45%), Positives = 288/465 (61%), Gaps = 5/465 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+DYETFG + A DRP+QFAG+R D I F+CK A+DYLP PEA+ IT
Sbjct: 6 NPSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIIGDPVTFYCKVANDYLPSPEAILIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A G+ EAEF ++H FS PNTC+ GYN+IRFDD SR FYRNFYD Y
Sbjct: 66 GITPQLANLKGIPEAEFMAKVHDLFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYARE 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWD++D++RA YAF PDGI+WP ++DG+ SFKL+ L AN + H AHDA +DV
Sbjct: 126 WQQGNSRWDIIDLVRACYAFRPDGIEWPVKEDGSPSFKLEHLTQANDLSHEKAHDAMSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + LI++K+PKLF+Y + R K ++ KLID+ NM PLVHVS + T +IA
Sbjct: 186 YATIDMAKLIKQKQPKLFDYYFTLRRKQEVSKLIDVLNMQPLVHVSSKISSLHGCTTIIA 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVA H K+++I NL+ D+ +L Q+ +R++T +L + +P+ +K++H+NKC
Sbjct: 246 PVAHHSTNKNAIICVNLAMDISPLIELSVDQIRERMYTRRADLAEDELPISVKQIHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + E+ ER ID E LL+Q LR++ A+++ Y S S D D QL
Sbjct: 306 PFIASAKTLSDENAERLNIDKAFAREQFKLLKQHPELREKLVAVFDVEYESGSTDPDLQL 365
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF+ D++ M+ I T+P+ L+ L L F D RL E+ FRYR RN+P T E E
Sbjct: 366 YSGGFFSSADKEKMEIIRHTSPQNLAALELEFDDSRLKEMLFRYRGRNYPETFDEMESMR 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
W E + L +Y KL++L E +E K+ L+ AL YL
Sbjct: 426 WREFCQARLND---PDYMLKLENLMNETAQNEDKQKLLTALCHYL 467
>gi|145631376|ref|ZP_01787147.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
gi|144983035|gb|EDJ90539.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
Length = 473
Score = 695 bits (1795), Expect = 0.0, Method: Composition-based stats.
Identities = 221/464 (47%), Positives = 305/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E +R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|301170130|emb|CBW29734.1| exonuclease I [Haemophilus influenzae 10810]
Length = 473
Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats.
Identities = 220/464 (47%), Positives = 303/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA DVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMEDVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|322514439|ref|ZP_08067481.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
gi|322119646|gb|EFX91708.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
Length = 515
Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats.
Identities = 214/468 (45%), Positives = 303/468 (64%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG ALDRPAQFAG+R D + I +F+CK DYLP PEAV +TGI
Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGDPVMFYCKQTPDYLPSPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ +GV E EF+ R H FS PNTCI+GYNNIR+DD +R F+RNF D Y +SW
Sbjct: 66 TPQQCNAEGVSEPEFAARTHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFVDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+W + ++G +FKL++L ANGI H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K +++K+ID MTPLVHVSGMFG +R NTA IAP+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIKKMIDTGEMTPLVHVSGMFGNARGNTAWIAPI 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP ++ V+ C+LSG + + +L L+T +EL + + PVP+K VH+N+CPI
Sbjct: 246 AWHPTNQNQVLCCDLSGYVSALLTDSAEELRTHLYTKKEELPENVAPVPLKGVHINRCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDVDSQL 360
+ P E+ R GID +RCLENL LL+ +L R++ I+ + +S +V++ L
Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEASANVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+ D+ M + P++L L F+D R+ L F YRAR++P TLS E+ W
Sbjct: 366 YDGFFSPADKNNMAILRTLQPQELEHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ + + ++ ++ + +L + + K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKSAQFAESIDNLFQIHHDNPEKVKLLEDLTAYAAQIA 472
>gi|309973062|gb|ADO96263.1| Exodeoxyribonuclease I [Haemophilus influenzae R2846]
Length = 473
Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats.
Identities = 221/464 (47%), Positives = 305/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+DI MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDIGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
+WHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 QKYRQNKLEKSAVE-FQSGLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|148826847|ref|YP_001291600.1| exonuclease I [Haemophilus influenzae PittGG]
gi|148718089|gb|ABQ99216.1| exodeoxyribonuclease I [Haemophilus influenzae PittGG]
Length = 473
Score = 693 bits (1790), Expect = 0.0, Method: Composition-based stats.
Identities = 221/464 (47%), Positives = 304/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EFS I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFSANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
+WHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|145632876|ref|ZP_01788609.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
gi|145634313|ref|ZP_01790023.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
gi|229844163|ref|ZP_04464304.1| exonuclease I [Haemophilus influenzae 6P18H1]
gi|319776340|ref|YP_004138828.1| exonuclease I [Haemophilus influenzae F3047]
gi|329123492|ref|ZP_08252056.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
gi|144986532|gb|EDJ93098.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
gi|145268293|gb|EDK08287.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
gi|229813157|gb|EEP48845.1| exonuclease I [Haemophilus influenzae 6P18H1]
gi|317450931|emb|CBY87157.1| exonuclease I [Haemophilus influenzae F3047]
gi|327471074|gb|EGF16529.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
Length = 473
Score = 693 bits (1790), Expect = 0.0, Method: Composition-based stats.
Identities = 220/464 (47%), Positives = 304/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T +L+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|68250106|ref|YP_249218.1| exonuclease I [Haemophilus influenzae 86-028NP]
gi|148825915|ref|YP_001290668.1| exonuclease I [Haemophilus influenzae PittEE]
gi|68058305|gb|AAX88558.1| exodeoxyribonuclease I [Haemophilus influenzae 86-028NP]
gi|148716075|gb|ABQ98285.1| exodeoxyribonuclease I [Haemophilus influenzae PittEE]
Length = 473
Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats.
Identities = 220/464 (47%), Positives = 304/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
+WHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 QKYRQNKLEKSAVE-FQSGLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|127512540|ref|YP_001093737.1| exonuclease I [Shewanella loihica PV-4]
gi|126637835|gb|ABO23478.1| Exodeoxyribonuclease I subunit C [Shewanella loihica PV-4]
Length = 482
Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats.
Identities = 205/464 (44%), Positives = 289/464 (62%), Gaps = 5/464 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRP+QFAG+R D I F+CK A DYLP PEA+ ITG
Sbjct: 19 PSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIISEPVTFYCKQASDYLPSPEAILITG 78
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ EAEF RI+ FS PNTC+ GYN++RFDD +R FYRNF+D Y W
Sbjct: 79 ITPQLANLKGMPEAEFMARINSEFSQPNTCVAGYNSLRFDDEVTRYGFYRNFFDPYAREW 138
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YA P+GI WP ++DG+ SFKL+ L AN + H AHDA +DVY
Sbjct: 139 QNGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTQANNLSHDKAHDAMSDVY 198
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LI+E++PKLF+Y ++ R KN++ K ID+ NM PL+HVS A T LIAP
Sbjct: 199 ATIAMAKLIKERQPKLFDYYFNLRKKNEVSKQIDVLNMQPLIHVSSKISALHGCTTLIAP 258
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
VA H K+++I NL+ D+ +L + ++ +R++T +L +P+ +K++H+NKCP
Sbjct: 259 VAHHSTNKNAIICVNLAMDVTPLIELSADEIRERMYTPRVDLASDELPIGLKQLHINKCP 318
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ + +R ID + LRQ +R++ A+++ + + D D QLY
Sbjct: 319 FIATAKTLTDGNAQRLEIDKEFARAQYKRLRQHPEIREKLVAVFDTEHGNEISDPDLQLY 378
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I TAP+ L+ L L F D RLPE+ FRYRARN+P TL + E+Q W
Sbjct: 379 SGGFFSHADKSKMEIIRHTAPQHLAALELDFDDERLPEMLFRYRARNYPETLDDTEQQRW 438
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
+ L +Y KL++L + + DE K+ L+ AL YL
Sbjct: 439 RTFCQSRLND---PDYMIKLETLVNDTEADEEKQKLLTALCHYL 479
>gi|229846770|ref|ZP_04466877.1| exonuclease I [Haemophilus influenzae 7P49H1]
gi|229810259|gb|EEP45978.1| exonuclease I [Haemophilus influenzae 7P49H1]
Length = 473
Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats.
Identities = 220/464 (47%), Positives = 304/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T +L+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|261868004|ref|YP_003255926.1| exonuclease I [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413336|gb|ACX82707.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 475
Score = 691 bits (1785), Expect = 0.0, Method: Composition-based stats.
Identities = 214/468 (45%), Positives = 304/468 (64%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEAV +TGI
Sbjct: 8 SFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ +I Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW
Sbjct: 68 TPQECNEKGLWEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA PDGI+WP D+G SF+L+ L ANGI H +AHDA +DVYA
Sbjct: 128 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDSAHDAMSDVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + LI+ K+PKLF+Y ++ R K ++ KLID M PLVHVSGM G R NT LIAP+
Sbjct: 188 TIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNTTLIAPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
WHP K++VI C+L+ D+ +L + L+T + L G +PVP+K +H+NKCP
Sbjct: 248 TWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
I+ P ++ ER GID + C +N L++ ++R + I+++ +S +V+++L
Sbjct: 308 IVAPAKTLLPQNAERLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETEL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D D+ M + PE+L+ NL F D R+PEL F YRAR+F TL+ E+ W
Sbjct: 368 YNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQIKW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ +K L ++ ++ +LQ L+ +Y +E L+ +YEY +I
Sbjct: 428 QKYCRKKLDAEALQ-FEQRLQELAEQYSNNEENLMLLQKVYEYGTKII 474
>gi|319897029|ref|YP_004135224.1| exonuclease i [Haemophilus influenzae F3031]
gi|317432533|emb|CBY80893.1| exonuclease I [Haemophilus influenzae F3031]
Length = 473
Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats.
Identities = 220/464 (47%), Positives = 304/464 (65%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W D G SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDAGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMGKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E +R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 468
>gi|167855672|ref|ZP_02478429.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
gi|167853190|gb|EDS24447.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
Length = 516
Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats.
Identities = 221/472 (46%), Positives = 305/472 (64%), Gaps = 5/472 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ F IYDYE+FG D A DRPAQFAG+R D + I +F+C+ +DYLP PEAV +
Sbjct: 2 VQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMV 61
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ + G+ E EF+ RIH FS PNTC++GYNNIR+DD +R F+RNF+D Y +
Sbjct: 62 TGITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEY 121
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SW NGNSRWDLLDV+RA YA P+GI+W D+G SFKL++L ANGI H NAHDA AD
Sbjct: 122 SWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAMAD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+A+ LI++K+PKLF++ R K L ++ID+ MTPLVHVSGM G R NTA +
Sbjct: 182 VYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAWV 241
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLN 298
P+AWHP +++VI C+LSG++ + S L +RL+T EL+ GL VP+K VH+N
Sbjct: 242 VPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHIN 301
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPY-TSSSQDV 356
KCPIL P E+ R GID + CLENL LL+ Q +L R++ I ++ +S ++
Sbjct: 302 KCPILAPAKTLLSENATRLGIDRQACLENLKLLKSQKSLVREKVIDILSEERNYPASNNI 361
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
++ LYDGFF D+ M + PE+L+ L FSD R+ L F YRAR++ TL+ E
Sbjct: 362 ETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPRIEPLLFHYRARHYSETLTRAE 421
Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+ W ++ + L ++ E ++ + LS +Y + K L+ L Y ++
Sbjct: 422 QVRWQKYCYQQL-ETKAEAFEQAVDLLSAQYHDNSEKIKLLTDLTAYAAQLM 472
>gi|260580789|ref|ZP_05848615.1| exonuclease I [Haemophilus influenzae RdAW]
gi|260092606|gb|EEW76543.1| exonuclease I [Haemophilus influenzae RdAW]
Length = 473
Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats.
Identities = 220/464 (47%), Positives = 301/464 (64%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L AN IEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E ++ LQ L E+ + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FEASLQRLVEEHSDNSEKLSLLQQVYEYG 468
>gi|212635816|ref|YP_002312341.1| exonuclease I [Shewanella piezotolerans WP3]
gi|212557300|gb|ACJ29754.1| Exodeoxyribonuclease I [Shewanella piezotolerans WP3]
Length = 470
Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats.
Identities = 207/467 (44%), Positives = 291/467 (62%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N +DYETFG + A DRP+QFAGVR D + I+ F+CK A+DYLP PEA+ ITG
Sbjct: 7 NTLFWHDYETFGANPAKDRPSQFAGVRTDMELNIIDEPVTFYCKLANDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A + G EAEF ++HQ FS NTC++GYN+IRFDD SR FYRNF+D Y W
Sbjct: 67 ITPQLANQKGTPEAEFMAKVHQQFSQENTCVVGYNSIRFDDEVSRYGFYRNFFDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YAF PDGI WP ++DG+ SFKL+ L +ANG+ H AHDA +DVY
Sbjct: 127 QNGNSRWDIIDLVRACYAFRPDGINWPQKEDGSPSFKLEQLTVANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LI+ +PKLF+Y + R K ++ KLID+ M PLVHVS A T LIAP
Sbjct: 187 ATIGMAKLIKSVQPKLFDYYFSLRKKQEVSKLIDVLAMKPLVHVSSKISALNGCTTLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+A+H K++VI NL+ D+ +L + Q+ +R++T ++L + +P+ +K++H+NK P
Sbjct: 247 LAYHSTNKNAVICVNLAMDVTPLIELTAEQIRERMYTRREDLAEDELPIGLKQIHINKSP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
L ++ R ID E LR +R++ A+++ D D QLY
Sbjct: 307 FLAGAKTLTDDNAARLDIDKAFAREQYKKLRLHPEIREKLVAVFDLQSDREIADPDLQLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P L+ L L F D RLPE+ FRYRARN+P TL++ E W
Sbjct: 367 SGGFFSQADKAKMEMIRNTKPMNLAALELTFDDERLPEMLFRYRARNYPETLNDSELLRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L +Y +L+++ E + +E K+ L+ AL YL+ +
Sbjct: 427 REFCQPRLND---PDYMIRLENIIEETEQNESKQKLLQALCHYLRSI 470
>gi|119775108|ref|YP_927848.1| exonuclease I [Shewanella amazonensis SB2B]
gi|119767608|gb|ABM00179.1| Exodeoxyribonuclease I subunit C [Shewanella amazonensis SB2B]
Length = 470
Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats.
Identities = 220/467 (47%), Positives = 287/467 (61%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG A DRPAQFAGVR D I+ F+C+ + DYLP PEA+ ITG
Sbjct: 7 PTIFWHDYETFGASPAKDRPAQFAGVRTDLDLNIIDEPVTFYCRLSPDYLPAPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A R G+ E EF RI FS PNTC+ GYN++RFDD SR FYRNF D Y W
Sbjct: 67 ITPQLANRQGLPETEFMGRIQAIFSRPNTCVAGYNSLRFDDEVSRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWD++D++RA YA P+GI WP ++DG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QQGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTAANGLGHDKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LI+EK+PKLF+Y + R K + + ID+ M PLVH+S A++ LIAP
Sbjct: 187 ATIALARLIKEKQPKLFDYYFRLRRKQAVAEQIDVLAMQPLVHISSKIPATQGCATLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCP 301
VA H R K++VI NL+ D++ DLD L RL+T ++L +PVP+K++HLNKCP
Sbjct: 247 VAHHMRNKNAVICVNLAMDIQPLIDLDVDALRTRLYTKREDLANDELPVPVKQIHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ + ER GID E LL+Q +R++ A++ + S D D LY
Sbjct: 307 FVANAKTLDDANAERLGIDKAFAREQYRLLKQHPEIREKLTALFEEEPQGMSNDPDYSLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ DR MD I T+PE L+ L L F D RLPE+ FRYRARN+P TLS E W
Sbjct: 367 SGGFFSPADRAKMDIIRNTSPEHLAALELQFDDTRLPEMLFRYRARNYPLTLSYDESLRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L +Y +L++L E DE K+ L+ AL +YLQ +
Sbjct: 427 REFCQARLND---PDYVIRLENLLEETTKDEKKQKLLGALCQYLQSL 470
>gi|119469387|ref|ZP_01612326.1| exonuclease I [Alteromonadales bacterium TW-7]
gi|119447251|gb|EAW28520.1| exonuclease I [Alteromonadales bacterium TW-7]
Length = 481
Score = 688 bits (1777), Expect = 0.0, Method: Composition-based stats.
Identities = 212/472 (44%), Positives = 301/472 (63%), Gaps = 8/472 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYET+G D+P+QFAG+R D I + +CKP DYLP PEA ITGI
Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A++ G+VEAEF +IH FS PNTC+ GYN+IRFDD SR FYRNFYD Y +
Sbjct: 70 TPQVAMKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+AL LI+EK+PKL+ + + RNK L L+D+ NMTPLVH S A++ T +AP+
Sbjct: 190 TIALAKLIKEKQPKLYNFFFGLRNKKALGDLVDVFNMTPLVHTSSRIPATQGCTTWVAPM 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
++HP K++VI +L+ +V DL+ +L KRL+T +L +G +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQSPQVLLDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNKCPI 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
L P E+ R GID ++CL NL +L+ T+LRD+ ++N+ S++ +VD LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDYLLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGF + D+ I P++L+ LNL F D++ L FRYRARN+P TL+++E W
Sbjct: 370 DGFTSHADKAKFAIIRDAKPDELAGLNLDFEDKKFNTLLFRYRARNWPETLNQQELDQWR 429
Query: 422 EHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L +++ L++L+ E+ E ++ ALY Y Q +
Sbjct: 430 QYCQNKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481
>gi|170717586|ref|YP_001784670.1| exonuclease I [Haemophilus somnus 2336]
gi|168825715|gb|ACA31086.1| Exodeoxyribonuclease I [Haemophilus somnus 2336]
Length = 476
Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats.
Identities = 222/468 (47%), Positives = 315/468 (67%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D+ + I +F+CK DDYLP PE+V +TGI
Sbjct: 6 SFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ G+ E EF+ +I FS PNTCI+GYNN+R+DD +R FYRNF D Y +SW
Sbjct: 66 TPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDL+DV+RA YA PDGI W DDG SF+L+ L NGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G R NT+ + P+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP +++VI C+L+ D+ +V+L + L+T EL+ ++PVP+K VH+NKCP
Sbjct: 246 AWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQL 360
IL P E+ + GID + CL+NL LRQ ++RD+ I+ ++ S +V+++L
Sbjct: 306 ILAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+ FF++ D+ M + + +PE+L+ NL FSD+R+P+L F YRAR+F TL E+ W
Sbjct: 366 YNQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRIPDLLFHYRARHFYKTLDRSEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++R++ L +S ++ ++ LQ L EY+ + K L+ +YEY ++
Sbjct: 426 QKYRQRKLEKSAVQ-FEESLQRLVEEYQNNPEKLLLLQQVYEYGATLL 472
>gi|117921013|ref|YP_870205.1| exonuclease I [Shewanella sp. ANA-3]
gi|117613345|gb|ABK48799.1| Exodeoxyribonuclease I subunit C [Shewanella sp. ANA-3]
Length = 470
Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats.
Identities = 210/467 (44%), Positives = 289/467 (61%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITG
Sbjct: 7 PSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 67 ITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIAP
Sbjct: 187 ATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA HP K+++I NL+ D+ +LD Q+ R++T EL +P+P+K+VHLNKCP
Sbjct: 247 VAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ ER ID E L+ LR++ ++ ++ D D LY
Sbjct: 307 FITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q W
Sbjct: 367 SGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ L+ ++Y KL++L + +GDE K+ L+ AL YL+ +
Sbjct: 427 RTFCQQRLSD---QDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470
>gi|157962308|ref|YP_001502342.1| exonuclease I [Shewanella pealeana ATCC 700345]
gi|157847308|gb|ABV87807.1| Exodeoxyribonuclease I [Shewanella pealeana ATCC 700345]
Length = 470
Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats.
Identities = 202/467 (43%), Positives = 285/467 (61%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRP+QFAGVR D I E F+CK A+DYLP PEA+ ITG
Sbjct: 7 PTLFWHDYETFGANPAKDRPSQFAGVRTDMDLNIIGEPETFYCKLANDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ EAEF +I+ FS P TC++GYN++RFDD SR FYRNF D Y W
Sbjct: 67 ITPQLANLKGMPEAEFMDKINSLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H AHDA +DVY
Sbjct: 127 QNGNSRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LI+ +PKLF+Y + R K Q+ KLID+ M PLVHVS A T +IAP
Sbjct: 187 ATIDMAKLIKSVQPKLFDYYFSLRLKQQVSKLIDVLEMKPLVHVSSKISALNGCTTIIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA+H K++VI NL+ D+ +L ++ +R++T +L +P+ +K++H+NK P
Sbjct: 247 VAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQIHINKSP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ + E+ R D L+Q LR++ A+++ + + D D LY
Sbjct: 307 FIAAANTLTDENAARLDFDKAFARAQYKKLKQHPELREKLVAVFDVEHEGKTVDPDQALY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ ++ I T P L+ L L F D+RL E+ FRYRARN+P TL + E+ W
Sbjct: 367 SGGFFSSADKAKIEIIRHTQPRNLAALELDFDDQRLSEMLFRYRARNYPETLDDSEQYRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L +Y +L++L E + DE K+ L+ AL YL+ +
Sbjct: 427 REFCQTRLND---PDYIIRLENLLEETEQDESKQKLLQALCHYLRNL 470
>gi|170726402|ref|YP_001760428.1| exonuclease I [Shewanella woodyi ATCC 51908]
gi|169811749|gb|ACA86333.1| Exodeoxyribonuclease I [Shewanella woodyi ATCC 51908]
Length = 470
Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats.
Identities = 210/465 (45%), Positives = 287/465 (61%), Gaps = 5/465 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ +DYETFG + A DRP+QFAG+R D I E F+CK A+DYLP PEA+ IT
Sbjct: 6 TSTIFWHDYETFGANPAKDRPSQFAGIRTDFDLNIIGEPETFYCKVANDYLPSPEAILIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A GV EAEF ++H FS PNTC+ GYN+IRFDD SR FYRNFYD Y
Sbjct: 66 GITPQLANLKGVPEAEFMGKVHALFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYARE 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWD++D++RA YAF P+GI+WP ++DG+ SFKL+ L ANG+ H AHDA +DV
Sbjct: 126 WQQGNSRWDIIDLVRACYAFRPEGIEWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + LI+EK+PKLF+Y ++ R K ++ KLID+ NM PL+HVS + ++IA
Sbjct: 186 YATIDMAKLIKEKQPKLFDYFFNLRKKQEVSKLIDVLNMQPLIHVSSKISSLHGCASIIA 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVA H K+++I NL+ D+ +LD Q+ +R++T +L +P+ +K+VH+NKC
Sbjct: 246 PVAHHSSNKNAIICVNLAMDISPLIELDVEQIRERMYTRRADLAPDELPISVKQVHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + E+ R ID E L+Q LR++ ++++ Y S S D D QL
Sbjct: 306 PFIASTKILTDENAARLDIDKAFAREQYKRLKQHPELREKLVSVFDVEYESDSNDPDLQL 365
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF+ D+ M+ I T P+ L+ L L F D RL E+ FRYR RN+P + E
Sbjct: 366 YSGGFFSSADKAKMEMIRHTLPQNLAALELHFDDSRLKEMLFRYRGRNYPEFFDDSESMK 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
W E + L +Y KL++L E E K+ L+ AL YL
Sbjct: 426 WREFCQSRLND---PDYMFKLENLVNETSQSEDKQKLLTALCHYL 467
>gi|167623714|ref|YP_001674008.1| exonuclease I [Shewanella halifaxensis HAW-EB4]
gi|167353736|gb|ABZ76349.1| Exodeoxyribonuclease I [Shewanella halifaxensis HAW-EB4]
Length = 493
Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats.
Identities = 204/467 (43%), Positives = 286/467 (61%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRP+QFAGVR D I E F+CK A+DYLP PEA+ ITG
Sbjct: 30 PTIFWHDYETFGANPAKDRPSQFAGVRTDLDLNIIGEPETFYCKLANDYLPSPEAILITG 89
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ EAEF +I+ FS P TC++GYN++RFDD SR FYRNF D Y W
Sbjct: 90 ITPQLANLKGMPEAEFMDKINGLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREW 149
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+RWD++D++RA YAF P+GI WP ++DG+ SFKL+ L +ANG+ H AHDA +DVY
Sbjct: 150 QNGNTRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAMSDVY 209
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LI+ +PKLF+Y + R K Q+ KLID+ M PLVHVS A T +IAP
Sbjct: 210 ATIDMAKLIKTVQPKLFDYYFSLRQKQQVSKLIDVLEMKPLVHVSSKISALNGCTTIIAP 269
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA+H K++VI NL+ D+ +L ++ +R++T +L +P+ +K+VH+NK P
Sbjct: 270 VAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQVHINKSP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ + E+ R D E L+Q LR++ A+++ + S + D D LY
Sbjct: 330 FIAAANTLTDENAARLDFDKAFAREQFRKLKQHPELREKLVAVFDVEHDSKAVDPDQALY 389
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ ++ I T P L+ L L F D RL E+ FRYRARN+P TL + E+ W
Sbjct: 390 SGGFFSSADKAKIEIIRNTKPSNLAALELDFDDSRLAEMLFRYRARNYPETLDDSEQYRW 449
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L +Y +L++L E + DE K+ L+ AL YL+ +
Sbjct: 450 REFCQTRLND---PDYIIRLENLLEETEQDESKQKLLQALCHYLRNL 493
>gi|315126831|ref|YP_004068834.1| exonuclease I [Pseudoalteromonas sp. SM9913]
gi|315015345|gb|ADT68683.1| exonuclease I [Pseudoalteromonas sp. SM9913]
Length = 481
Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats.
Identities = 215/472 (45%), Positives = 301/472 (63%), Gaps = 8/472 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYET+G D+P+QFAGVR D I + +CKP DYLP PEA ITGI
Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y +
Sbjct: 70 TPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+AL LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH S A++ T +AP+
Sbjct: 190 TIALAKLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVAPM 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
++HP K++VI +L+ + +V DL+ QL KRL+T +L +G +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKCPI 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
L P E+ R GID ++CL NL +L+ T LRD+ ++N+ S++ +VD LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDYLLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGF + D+ I PE L++L L F D + L FRYRARN+P TL+++E W
Sbjct: 370 DGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTLNQQELDQWR 429
Query: 422 EHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L +++ L++L+ E+ E ++ ALY Y Q +
Sbjct: 430 QYCQSKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481
>gi|163752570|ref|ZP_02159753.1| exodeoxyribonuclease I [Shewanella benthica KT99]
gi|161327543|gb|EDP98744.1| exodeoxyribonuclease I [Shewanella benthica KT99]
Length = 470
Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats.
Identities = 205/465 (44%), Positives = 288/465 (61%), Gaps = 5/465 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +DYETFG + + DRP+QFAG+R D + F+CK A DYLP PEA+ IT
Sbjct: 6 NHTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKLATDYLPSPEAILIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ G+ E EF ++++ FS PNTC+ GYN+IRFDD +R FYRNF D Y
Sbjct: 66 GITPQLVNLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRYGFYRNFIDPYARE 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWD++D++RA YAF P+GI+WP ++DG SFKL+ L ANG+ H AHDA +DV
Sbjct: 126 WQKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + LI++K+PKLF+Y + R K ++ K +D+ NM PLVHVS A T LIA
Sbjct: 186 YATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMLPLVHVSSKISAEHGCTTLIA 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVA H K+++I NL+ D+ +LD+ Q+ +R++T D+L +P+ +K++H+NKC
Sbjct: 246 PVAHHSSNKNAIICVNLAMDISPLIELDAEQIRERMYTRRDDLADDELPISVKQIHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + E +R ID E LL+Q LR++ A+++ + + SQD D QL
Sbjct: 306 PFITSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNGSQDPDLQL 365
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF D++ M+ I T P+ L+ L L F D+RL E+ FRYRARN+P TL E E
Sbjct: 366 YSGGFFGSADKEKMEIIRHTLPQNLAALELNFDDQRLKEMLFRYRARNYPATLDESESMK 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
W + + L EY +L++L + DE K+ L+ AL YL
Sbjct: 426 WRDFCQSRLND---PEYMMQLENLVNDTANDEDKQKLLTALCHYL 467
>gi|315634266|ref|ZP_07889553.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
gi|315476856|gb|EFU67601.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
Length = 475
Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats.
Identities = 216/468 (46%), Positives = 305/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQF G+R D + I V +CK +DYLP PEAV +TGI
Sbjct: 8 SFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPVVLYCKQTNDYLPAPEAVLVTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E +F+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW
Sbjct: 68 TPQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI+WP DDG SF L+ L ANGIEH NAHDA +DVYA
Sbjct: 128 NGNSRWDLLDLVRACYALRPNGIEWPLDDDGMPSFHLEKLTKANGIEHTNAHDAMSDVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + LI++K+PKLF+Y ++ R K ++ KLI+ MTPLVHVSGM G R NT LIAP+
Sbjct: 188 TIEMAKLIKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
AWHP K++VI C+L+ ++ + +L + L+T + L G++PVP+K +H+NKC
Sbjct: 248 AWHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLPVPLKLIHINKCS 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P ++ ER GI+ C +N L ++R + I+ + +S +V+++L
Sbjct: 308 ILAPEKTLLPQNAERLGINRALCEKNQQRLLASKDVRQKVMDIFQQDREFEASDNVETEL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF+D D+ M + PE+L+ NL F D R+P+L F YRAR+F TL+ E+ W
Sbjct: 368 YNGFFSDADKNNMAILRTLEPEKLAEHNLSFQDPRIPQLLFHYRARHFYRTLNRAEQIKW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++R+K L + + ++ LQ L+ + + DE K L+ +YEY +I
Sbjct: 428 QKYRRKKL-EAEVLRFEQSLQELATQNENDEEKLTLLQKVYEYGNKII 474
>gi|294141308|ref|YP_003557286.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
gi|293327777|dbj|BAJ02508.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
Length = 470
Score = 686 bits (1772), Expect = 0.0, Method: Composition-based stats.
Identities = 204/468 (43%), Positives = 292/468 (62%), Gaps = 5/468 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +DYETFG + + DRP+QFAG+R D + F+CK A+DYLP PEA+ IT
Sbjct: 6 NHTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKVANDYLPSPEAILIT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A G+ E EF ++++ FS PNTC+ GYN+IRFDD +R FYRNF D Y
Sbjct: 66 GITPQLANLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRFGFYRNFIDPYARE 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWD++D++RA YAF P+GI+WP ++DG SFKL+ L ANG+ H AHDA +DV
Sbjct: 126 WQKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHDAMSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + LI++K+PKLF+Y + R K ++ K +D+ NM PLVHVS A T LIA
Sbjct: 186 YATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMQPLVHVSSKISAEHGCTTLIA 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVA H K+++I NL+ D+ +LD+ Q+ R++T D+L +P+ +K++H+NKC
Sbjct: 246 PVAHHSTNKNAIICVNLAMDISPLIELDAEQIRDRMYTRRDDLAADELPISVKQIHINKC 305
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + E +R ID E LL+Q LR++ A+++ + ++SQD D QL
Sbjct: 306 PFVTSPKILTDELAQRLNIDKAFAREQYKLLKQHPELREKLVAVFDVEHDNASQDPDFQL 365
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF+ D++ M+ I T P+ L+ L F D+RL E+ FRYRARN+P TL E E
Sbjct: 366 YSGGFFSSADKEKMEIIRHTLPQNLAALEFNFDDQRLKEMLFRYRARNYPATLDESESMK 425
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + + L EY +L++L + +E K+ L+ AL YL+ +
Sbjct: 426 WRDFCQTRLDD---PEYMIRLENLVNDTTDNEDKQKLLTALCHYLRDL 470
>gi|16273288|ref|NP_439529.1| exonuclease I [Haemophilus influenzae Rd KW20]
gi|1169569|sp|P45188|EX1_HAEIN RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|1574211|gb|AAC23023.1| exodeoxyribonuclease I (sbcB) [Haemophilus influenzae Rd KW20]
Length = 473
Score = 686 bits (1772), Expect = 0.0, Method: Composition-based stats.
Identities = 218/464 (46%), Positives = 300/464 (64%), Gaps = 4/464 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF + Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIEPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L AN IEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++R+ L +S +E ++ LQ L + + K L+ +YEY
Sbjct: 426 KKYRQNKLEKSAVE-FEASLQRLVEXHSDNSEKLSLLQQVYEYG 468
>gi|332535945|ref|ZP_08411647.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
gi|332034679|gb|EGI71232.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
Length = 481
Score = 685 bits (1769), Expect = 0.0, Method: Composition-based stats.
Identities = 210/472 (44%), Positives = 303/472 (64%), Gaps = 8/472 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYET+G D+P+QFAG+R D I + +CKP DYLP PEA ITGI
Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y +
Sbjct: 70 TPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+AL LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH + A++ T+ +AP+
Sbjct: 190 TIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVAPM 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
++HP K++VI +L+ + +V DL+ +L KRL+T +L + +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEDDLPVGLKLVHLNKCPI 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
L P E+ R GID ++CL NL +L+ T+LRD+ ++N+ S++ +VD LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLANLAILKANTDLRDKVTEVFNEQGDYSATTNVDYLLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGF + D+ I P++L+ L L F D++ L FRYRARN+P TL+++E W
Sbjct: 370 DGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQELDQWR 429
Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L +++ L++L+ E+ E ++ ALY Y Q +
Sbjct: 430 QYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481
>gi|126173926|ref|YP_001050075.1| exonuclease I [Shewanella baltica OS155]
gi|125997131|gb|ABN61206.1| Exodeoxyribonuclease I subunit C [Shewanella baltica OS155]
Length = 472
Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats.
Identities = 211/466 (45%), Positives = 289/466 (62%), Gaps = 5/466 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PV
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
+ EH R GID + E L+ LR++ ++ + ++ D D LY
Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369
Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 430 EFCQSRLAD---QDYVLKLENLLQDTQVDETKQKLLAALCHYLREL 472
>gi|217973824|ref|YP_002358575.1| exonuclease I [Shewanella baltica OS223]
gi|217498959|gb|ACK47152.1| Exodeoxyribonuclease I [Shewanella baltica OS223]
Length = 470
Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats.
Identities = 210/467 (44%), Positives = 288/467 (61%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRP+QFAG+R D I E F+CK DYLP PEA+ ITG
Sbjct: 7 PSIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQTPDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 67 ITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QNGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+P
Sbjct: 187 ATIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP
Sbjct: 247 VAHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ EH R GID + E L+ LR++ ++ + ++ D D LY
Sbjct: 307 FITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W
Sbjct: 367 SGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 427 REFCQSRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 470
>gi|153000207|ref|YP_001365888.1| exonuclease I [Shewanella baltica OS185]
gi|151364825|gb|ABS07825.1| Exodeoxyribonuclease I [Shewanella baltica OS185]
Length = 472
Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats.
Identities = 211/466 (45%), Positives = 288/466 (61%), Gaps = 5/466 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYVREWQ 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PV
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
+ EH R GID E L+ LR++ ++ + ++ D D LY
Sbjct: 310 ITSAKILSDEHAARLGIDKAFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369
Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 430 EFCQSRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472
>gi|114047972|ref|YP_738522.1| exonuclease I [Shewanella sp. MR-7]
gi|113889414|gb|ABI43465.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-7]
Length = 470
Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats.
Identities = 209/467 (44%), Positives = 288/467 (61%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITG
Sbjct: 7 PSIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 67 ITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIAP
Sbjct: 187 ATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA HP K+++I NL+ D+ +LD Q+ R++T EL + +P+P+K+VHLNKCP
Sbjct: 247 VAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ ER ID E L+ LR++ ++ ++ D D LY
Sbjct: 307 FITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q W
Sbjct: 367 SGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ L+ ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 427 RIFCQQRLSD---QDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470
>gi|52425136|ref|YP_088273.1| exonuclease I [Mannheimia succiniciproducens MBEL55E]
gi|52307188|gb|AAU37688.1| SbcB protein [Mannheimia succiniciproducens MBEL55E]
Length = 472
Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats.
Identities = 218/468 (46%), Positives = 311/468 (66%), Gaps = 5/468 (1%)
Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
MT+ F IYD+E+FG + A DRPAQFAG+R D+ + I +F+CK +DYLP PEAV
Sbjct: 1 MTDFSFFIYDFESFGVNPADDRPAQFAGIRTDKDFNIISDPVMFYCKQTNDYLPAPEAVM 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGITPQ+ G+ E EF+ RI FS PNTCI+G+NNIR+DD +R FYRNF D Y
Sbjct: 61 VTGITPQECNEKGISEPEFAARILAEFSQPNTCIMGFNNIRYDDEMTRYTFYRNFIDPYE 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+SW NGNSRWDLLD++RA YA P+GI WP ++G SF+L+ L ANGIEH NAHDA A
Sbjct: 121 YSWKNGNSRWDLLDLVRACYALRPEGINWPLDEEGMPSFRLEKLTKANGIEHENAHDAMA 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DVYAT+A+ LI+EK+PKLF++ ++ R K ++ K ID MTPLVHVSGM G R N
Sbjct: 181 DVYATIAMAKLIKEKQPKLFQFFFENRGKKEIEKWIDTAEMTPLVHVSGMLGNYRGNCTW 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHL 297
IAP+AWHP +++VI C+L+ ++ + +V+L + L+T EL+ G++PVP+K VH+
Sbjct: 241 IAPLAWHPINQNAVIACDLAQNIDDLLNKSAVELRENLYTQKTELENDGVLPVPLKLVHI 300
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDV 356
NKCPI+ P E+ +R GID + CL+NL L++ ++RD+ ++N+ S +V
Sbjct: 301 NKCPIIAPAKTLLPENAQRLGIDRQFCLDNLKKLQKSLDIRDKVIEVFNEERKFDDSDNV 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
+++LY GFF+ D+ M + PE+L+ L F D+R+P+L F YRAR+F TL+ E
Sbjct: 361 ETELYSGFFSKADKNNMTILRTLEPEKLADSGLQFEDKRIPDLLFHYRARHFYKTLNRGE 420
Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
+ W ++R++ L +S ++ + LQ L E K L+ +Y+Y
Sbjct: 421 QIKWQKYRRQKLEKSAVQ-FMESLQHLGEENSNHPDKLKLLQQIYDYG 467
>gi|113461015|ref|YP_719082.1| exonuclease I [Haemophilus somnus 129PT]
gi|112823058|gb|ABI25147.1| Exodeoxyribonuclease I subunit C [Haemophilus somnus 129PT]
Length = 486
Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats.
Identities = 221/470 (47%), Positives = 314/470 (66%), Gaps = 4/470 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D+ + I +F+CK DDYLP PE+V +TGI
Sbjct: 16 SFFIYDYESFGINPATDRPAQFAGIRTDQNFNIIGEPVMFYCKQTDDYLPSPESVLVTGI 75
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ G+ E EF+ +I FS PNTCI+GYNN+R+DD +R FYRNF D Y +SW
Sbjct: 76 TPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWK 135
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDL+DV+RA YA PDGI W DDG SF+L+ L NGIEH NAHDA ADVYA
Sbjct: 136 NGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYA 195
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++K+PKLF++ ++ R K ++ KLIDI NM PLVHVSGM G R NT+ + P+
Sbjct: 196 TIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPL 255
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP +++VI C+L+ D+ +V+L + L+T EL+ ++PVP+K VH+NKCP
Sbjct: 256 AWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCP 315
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY-NKPYTSSSQDVDSQL 360
IL P E+ + GID + CL+NL LRQ ++RD+ I+ ++ S +V+++L
Sbjct: 316 ILAPAKTLLPENATKLGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETEL 375
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y FF++ D+ M + + +PE+L+ NL FSD+R+ +L F YRAR+F TL E+ W
Sbjct: 376 YKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRISDLLFHYRARHFYKTLDRSEQIKW 435
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
++R++ L +S ++ ++ LQ L EY+ + + L+ +YEY ++ K
Sbjct: 436 QKYRQRKLEKSVVQ-FEESLQRLVEEYQNNPEELLLLQQVYEYGATLLSK 484
>gi|77360198|ref|YP_339773.1| exonuclease I [Pseudoalteromonas haloplanktis TAC125]
gi|76875109|emb|CAI86330.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis TAC125]
Length = 481
Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats.
Identities = 210/472 (44%), Positives = 299/472 (63%), Gaps = 8/472 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYET+G D+P+QFAGVR D I + +CKP DYLP PEA ITGI
Sbjct: 10 TIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y +
Sbjct: 70 TPQVAMKKGLVEAEFIAKIHAQFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYK 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N NSRWD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV A
Sbjct: 130 NNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+AL LI++K+PKL+ + + R K L +L+D+ NMTPLVH S A++ T+ +AP+
Sbjct: 190 TIALAKLIKDKQPKLYNFFFSLRGKKALAELVDVFNMTPLVHTSSRIPATQGCTSWVAPM 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
++HP K++VI +L+ +V DL QL KRL+T +L + +PV +K VHLNKCPI
Sbjct: 250 SFHPVNKNAVICFDLTQSPQVLIDLSVEQLRKRLYTKRIDLAEDELPVGLKLVHLNKCPI 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLY 361
L P E+ R GID ++CL+NL +L+ + LRD+ ++N+ S++ +VD LY
Sbjct: 310 LAPAKTLLPENAARLGIDREQCLKNLAVLKANSELRDKVTEVFNEQGDYSATTNVDYLLY 369
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGF + D+ I PE L+ L L F +++ L FRYRARN+P TL+++E W
Sbjct: 370 DGFTSHADKAKFAIIRDAKPEDLADLKLDFENKKFNTLLFRYRARNWPQTLNQQELDQWR 429
Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + L +++ L++L+ E+ E ++ ALY Y Q +
Sbjct: 430 QYCQNKLMHGEDQPSINAQDFMITLENLAHEHDDSEKNLTILKALYNYAQSM 481
>gi|304409797|ref|ZP_07391417.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
gi|307304154|ref|ZP_07583907.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
gi|304352315|gb|EFM16713.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
gi|306913052|gb|EFN43475.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
Length = 472
Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats.
Identities = 211/466 (45%), Positives = 289/466 (62%), Gaps = 5/466 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTHANGLSHEKAHDAMSDVYA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+PV
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
+ EH R GID + E L+ LR++ ++ + ++ D D LY
Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRTTIDPDLMLYS 369
Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 430 EFCQNRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472
>gi|113970745|ref|YP_734538.1| exonuclease I [Shewanella sp. MR-4]
gi|113885429|gb|ABI39481.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-4]
Length = 470
Score = 681 bits (1759), Expect = 0.0, Method: Composition-based stats.
Identities = 208/467 (44%), Positives = 287/467 (61%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITG
Sbjct: 7 PSIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RIH FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 67 ITPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A + T LIAP
Sbjct: 187 ATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
V HP K+++I NL+ D+ +LD Q+ R++T EL + +P+P+K+VHLNKCP
Sbjct: 247 VTHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ ER ID E L+ LR++ ++ ++ D D LY
Sbjct: 307 FITSAKILDDAQAERLNIDKAFAREQYKRLKAHPELREKLAQLFEHEGEVTTTDPDLMLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L+++E Q W
Sbjct: 367 SGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEAQRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ L+ ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 427 RIFCQQRLSD---QDYLLKLENLLQDTEADEYKQKLLAALCHYLRGL 470
>gi|71280482|ref|YP_268744.1| exonuclease I [Colwellia psychrerythraea 34H]
gi|71146222|gb|AAZ26695.1| exodeoxyribonuclease I [Colwellia psychrerythraea 34H]
Length = 487
Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats.
Identities = 204/474 (43%), Positives = 303/474 (63%), Gaps = 11/474 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G + D+P+QFAG+R D I E+F+C P DYLP PEA +TG
Sbjct: 13 PSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTG 72
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA R+G+ EAEF+ RIH F+ PNTC+ GYN+IRFDD +R + YRNFYD Y W
Sbjct: 73 ITPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREW 132
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPS---RDDGATSFKLQDLALANGIEHVNAHDAKA 179
NGNSRWD++D++RA YA P+GI WP+ + SF+L+ L AN I H AHDA +
Sbjct: 133 QNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAMS 192
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DVYAT+A+ LI+EK+PKL++++++ +NKNQ++ LI+ MTP+VH S ++ T+
Sbjct: 193 DVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTSW 252
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
APV++HP K++VI +L+ D+ L S ++ RL+T +D+L +P+P+K +H+N
Sbjct: 253 FAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHVN 312
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVD 357
KCP++ P E+ ER I CL+NL LLR+ LRD+ ++ + + D +
Sbjct: 313 KCPVIAPAKTLLPENAERLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDVDAE 372
Query: 358 SQLYDG-FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
LY G FF+ D+ MD + +PEQL+ F D RL L FRYRARN+P+TLS +E
Sbjct: 373 QALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLSTEE 432
Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+Q W ++ + L ++E+ K+++L+ E++ D+ K ++ ALYE+LQ
Sbjct: 433 QQKWQQYCQNKLQYGGKGILSLDEFMMKIENLAHEHETDKAKMSVLKALYEFLQ 486
>gi|24374325|ref|NP_718368.1| exonuclease I [Shewanella oneidensis MR-1]
gi|24348874|gb|AAN55812.1|AE015718_4 exodeoxyribonuclease I [Shewanella oneidensis MR-1]
Length = 470
Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats.
Identities = 207/467 (44%), Positives = 284/467 (60%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRPAQFAG+R D I E F+CK + DYLP PEA+ ITG
Sbjct: 7 PSIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RIH FS NTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 67 ITPQLANLKGLPETEFMGRIHTLFSQANTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+RWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LI+EK+PKL++Y ++ R K + ID+ NM PL HVS A T LIAP
Sbjct: 187 ATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISAMHGCTTLIAP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA HP K+++I NL+ D+ +LD Q+ R++T EL +P+P+K+VHLNKCP
Sbjct: 247 VAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDELPIPVKQVHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ ER ID L+ LR++ ++ +++ D D LY
Sbjct: 307 FITSAKILDDAQAERLSIDKAFARGQYKRLKAHPELREKLAQLFEHDGEATTTDPDLMLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L ++E W
Sbjct: 367 SGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLDDQESHRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ L ++Y KL++L + +GDE K+ L+ AL YL+ +
Sbjct: 427 RTFCQQRLAD---QDYLLKLENLLQDTEGDEHKQKLLAALCHYLRGL 470
>gi|260914022|ref|ZP_05920495.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
gi|260631655|gb|EEX49833.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
Length = 476
Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats.
Identities = 219/469 (46%), Positives = 301/469 (64%), Gaps = 5/469 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGI
Sbjct: 8 SFFIYDYESFGVNPASDRPAQFAGIRTDIDFNIIGEPVMLYCKQTNDYLPSPEAVLVTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW
Sbjct: 68 TPQECNEKGISEPEFAERILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W ++G SF+L+ L NGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAHDENGMPSFRLEKLTQVNGIEHSNAHDAMADVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF++ ++ R K ++ LID+ NMTPLVHVSGM G R NTA + P+
Sbjct: 188 TIAMAKLIKEKQPKLFQFFFENRGKKEIENLIDVANMTPLVHVSGMLGNYRGNTAWVVPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
AWHP +++VI C+LS ++ + +L + L+T EL KG++PVP+K VH+NKCP
Sbjct: 248 AWHPINQNAVIVCDLSANLDDLLTKSAAELRQNLYTPKAELLEKGILPVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY--TSSSQDVDSQ 359
IL P E+ R GID + CL+NL L+ N+RD I+ S +V+++
Sbjct: 308 ILAPAKVLLPENALRLGIDREFCLQNLQRLKNSANIRDIVTDIFTNEDKVFEPSLNVETE 367
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GFF D+ M + ++L+ L F D+R+PEL F YRAR+ TL+ E+
Sbjct: 368 LYSGFFDFSDKNNMAILRNLPVDKLAEHGLAFKDKRIPELLFHYRARHHFSTLTRAEQIK 427
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W ++R K L +S +E ++ LQ L E + K L+ +YEY ++
Sbjct: 428 WQKYRHKKLEQSAVE-FEQNLQRLIEENHNNPEKLELLKKVYEYGAKLL 475
>gi|160874834|ref|YP_001554150.1| exonuclease I [Shewanella baltica OS195]
gi|160860356|gb|ABX48890.1| Exodeoxyribonuclease I [Shewanella baltica OS195]
gi|315267073|gb|ADT93926.1| Exodeoxyribonuclease I [Shewanella baltica OS678]
Length = 472
Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats.
Identities = 211/466 (45%), Positives = 288/466 (61%), Gaps = 5/466 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ ITGI
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ A GV E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 70 TPQLANLKGVPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWD++D++RA YAF P+GI WP+++DG+ SFKL+ L ANG+ H AHDA +DVYA
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LIREK+PKL++Y +D R K + ID+ NM PLVHVS A T LI+ V
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISTV 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A HP K++VI NL+ D+ +LD Q+ R++T +L + +P+ +K++HLNKCP
Sbjct: 250 AHHPNNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
+ EH R GID + E L+ LR++ ++ + ++ D D LY
Sbjct: 310 ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELREKLALLFEHDDSRATTDPDLMLYS 369
Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+ D+ M+ I T P+ L+ L+L F D R+PE+ FRYRARN+P L +E Q W
Sbjct: 370 GGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDYEESQRWR 429
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L + + DE K+ L+ AL YL+ +
Sbjct: 430 EFCQNRLAD---QDYVLKLENLLQDTQADETKQKLLAALCHYLREL 472
>gi|237807889|ref|YP_002892329.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
gi|237500150|gb|ACQ92743.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
Length = 506
Score = 678 bits (1751), Expect = 0.0, Method: Composition-based stats.
Identities = 220/464 (47%), Positives = 301/464 (64%), Gaps = 2/464 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N F+ +DYETFG D A DRPAQFAG+R D + V +C+ + DYLP PEA ITG
Sbjct: 42 NTFLFHDYETFGIDPARDRPAQFAGIRTDADFNICGEPVVIYCQMSPDYLPAPEACLITG 101
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A ++G+ EA+F R IHQ FS P TC++GYNNIRFDD ++R FYRNF D Y +SW
Sbjct: 102 ITPQIANQNGICEADFFRTIHQQFSQPATCVLGYNNIRFDDEFTRYGFYRNFLDPYAYSW 161
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLLDV RA YA P+GI W +G SF+L+ L++ANGI+H NAHDA +DVY
Sbjct: 162 QQGNSRWDLLDVARAFYALRPEGINWVYDAEGKPSFRLEKLSVANGIQHENAHDAMSDVY 221
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L +++ +P+LFEYL +R KN+L+ LIDI N+ PLVHVSGMF A + + IAP
Sbjct: 222 ATIGLAKSLKQAQPRLFEYLSTHRGKNKLKNLIDIINIKPLVHVSGMFSAVQGCVSWIAP 281
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP ++VI +L D+ +L+ +L +RL+T D++ PVP+K +H+NKCP+
Sbjct: 282 MAWHPTNNNAVIVIDLHKDLSPLLELNITELRERLYTRKDDITDGSPVPVKLIHINKCPV 341
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQLY 361
L P +E + GI+ C++NL +LRQ +R++ +++ Y +QD + LY
Sbjct: 342 LAPASSLSEERAQELGINRDLCMQNLAVLRQNPQIREKLAGLFSDEYIPPANQDPEHMLY 401
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF++ DR +D I + + EQL+ F D RLP L FRYRARN+PHTLS +E+Q W
Sbjct: 402 QGFFSEADRAAIDLIQQASAEQLAAGQYQFHDPRLPTLLFRYRARNYPHTLSPREQQQWQ 461
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+ L SR E Y +L++L + +I AL YLQ
Sbjct: 462 QFCVDALN-SRAEPYLLRLEALLEGKVPGTREWNIIKALALYLQ 504
>gi|332288227|ref|YP_004419079.1| exonuclease I [Gallibacterium anatis UMN179]
gi|330431123|gb|AEC16182.1| exonuclease I [Gallibacterium anatis UMN179]
Length = 471
Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats.
Identities = 217/462 (46%), Positives = 297/462 (64%), Gaps = 3/462 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG D A DRPAQFAG+R D+ + I V +CK +DYLP P AV +TGI
Sbjct: 5 SFFIYDYESFGVDPARDRPAQFAGIRTDKDFNIIGEPIVLYCKQTNDYLPHPAAVALTGI 64
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ + G+ E EF+ +I + FS PNTCI+GYNNIRFDD +R FYRNF D Y +S+
Sbjct: 65 TPQLCNQQGISEPEFAAKILEEFSQPNTCIMGYNNIRFDDEMTRYTFYRNFIDPYAYSYS 124
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GNSRWDLLDV+RA YA P+GI W D+G SF+L+ L AN IEH +AHDA +DVYA
Sbjct: 125 QGNSRWDLLDVIRATYALRPEGINWVYDDEGMPSFRLELLTKANNIEHSHAHDAMSDVYA 184
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + LI++++PKLF+Y + +R+K ++ +LID NMTPLVHVSGM G RSN + + P+
Sbjct: 185 TIEMAKLIKQQQPKLFDYFFTHRSKKEIEELIDYVNMTPLVHVSGMLGNYRSNISWMVPL 244
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
A HP K++VI C+L+ D+ L +L + L+T EL+ G VP+K VH NKCP
Sbjct: 245 APHPTNKNAVIFCDLAADIDDLLTLSVEELKQNLYTKKAELELQGKKSVPLKLVHCNKCP 304
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
IL P + + ER GID ++CL NL L+ +R++ I+ + Y + DV++ LY
Sbjct: 305 ILAPAKTLRPQDAERVGIDRQQCLTNLAKLQAMPEIREKVHQIFLEEYDNDYDDVETALY 364
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
FF+ D+ + + +PEQL+ L F D+R+PEL FRYRAR+F TLS E+ W
Sbjct: 365 KVFFSYSDKNNLAILRTLSPEQLANHGLTFQDKRIPELLFRYRARHFYKTLSRAEQIKWQ 424
Query: 422 EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
++ L + E+ + + LS +Y DE K L+ LYEY
Sbjct: 425 KYCHAKL-DASSAEFIAEFEMLSAQYANDENKLLLLQNLYEY 465
>gi|114562814|ref|YP_750327.1| exonuclease I [Shewanella frigidimarina NCIMB 400]
gi|114334107|gb|ABI71489.1| Exodeoxyribonuclease I subunit C [Shewanella frigidimarina NCIMB
400]
Length = 473
Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats.
Identities = 209/469 (44%), Positives = 291/469 (62%), Gaps = 6/469 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +DYETFG + + DRP+QFAG+R D + I E F+CK A DYLP PEA+ IT
Sbjct: 8 TPSLYWHDYETFGANPSKDRPSQFAGIRTDLELNIIGEPETFYCKLAPDYLPSPEAILIT 67
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A GV EAEF +RI+ FS PNTC++GYN++RFDD SR FYRNF D Y
Sbjct: 68 GITPQLANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFIDPYGRE 127
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD++D++RA YAF PDGI WP ++DG+ SFKL+ L ANG+ H AHDA +DV
Sbjct: 128 WQNGNSRWDIIDLVRACYAFRPDGINWPKKEDGSPSFKLELLTQANGLSHEKAHDAMSDV 187
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ LI++ PKL+EY ++ R K + ID+ M PLVHVS A + T LIA
Sbjct: 188 YATIAMAKLIKQTHPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQGCTTLIA 247
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVA+HP K++VI NL+ D+ +L + ++ R++TS L + + +P+K++HLNKC
Sbjct: 248 PVAYHPTNKNAVICINLAMDISPLLELSAQEINDRMYTSRQNLAENELAIPLKQIHLNKC 307
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT-SSSQDVDSQ 359
P + E E+ D E L+ LR++ ++ + D D
Sbjct: 308 PFIGSPKLLDDEVAEKLQFDKAFAREQYKRLKNHPELREKLNQVFELESDRKAITDPDLM 367
Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GFF+ D+ +D I TAP L+ L L F D R+ E+ FR+RARN+P TLS+ E +
Sbjct: 368 LYSGGFFSHADKTKIDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPETLSDSEAR 427
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L+ + +Y KL++L E +E K+ L+ ALY+YLQ +
Sbjct: 428 KWRDFCQQRLSDA---DYVIKLENLVEETSENEHKQKLLKALYQYLQSL 473
>gi|304413420|ref|ZP_07394893.1| exonuclease I [Candidatus Regiella insecticola LSR1]
gi|304284263|gb|EFL92656.1| exonuclease I [Candidatus Regiella insecticola LSR1]
Length = 475
Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats.
Identities = 235/464 (50%), Positives = 325/464 (70%), Gaps = 3/464 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F ++DYETFG++ ALDRP QFAGVR D + I+ V +C PA+DYLP PEAV ITG
Sbjct: 8 STFYVHDYETFGQNPALDRPVQFAGVRTDDDFNIIDDPLVIYCAPANDYLPQPEAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL+ GV EAEF ++IHQ FSV TC +GYNNIRFDD SRNIFYRNFYD Y ++W
Sbjct: 68 ITPQYALKHGVNEAEFCQKIHQQFSVAGTCTLGYNNIRFDDEVSRNIFYRNFYDPYAYNW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA YA P+GI WP DG SFKL+ LA ANGI+H+ AHDA +DVY
Sbjct: 128 QNGNSRWDLLDVVRACYALRPEGINWPKNADGLPSFKLEHLAKANGIQHLKAHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L L+++ +P+LF+Y Y +R+K++++ LIDI+NMTPLVHVSGMFG RSN +L+AP
Sbjct: 188 ATIELAKLVKQAQPRLFKYFYHHRSKHKIKALIDIENMTPLVHVSGMFGVRRSNISLVAP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP K++VI C+L+ D+ LD L + L+T D L + +P+K VH+NKCP
Sbjct: 248 LAWHPENKNAVIVCDLAADISPL-SLDVNTLREHLYTPKDPLNPQQITIPLKLVHINKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QDVDSQL 360
IL P++ +++ +R ID + CL L LRQ ++++ A++ + +VD+QL
Sbjct: 307 ILAPVNTWREKETKRLKIDLQYCLNQLESLRQNPQIKEKVNALFKQMTARPKVNNVDAQL 366
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF D D + +I +T+P+ L LN F D RL L FR+RARN+ +TL + E++
Sbjct: 367 YCGFFNDTDHNTIKKIQQTSPQNLPALNFCFQDPRLETLLFRFRARNYHNTLDDTEQRRL 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
LE+RK++L+ +I+EY +L L +Y+ +E K L+ +L +Y+
Sbjct: 427 LEYRKEVLSPEKIKEYILQLNQLCYQYQNNEEKSSLLKSLLDYV 470
>gi|146292669|ref|YP_001183093.1| exonuclease I [Shewanella putrefaciens CN-32]
gi|145564359|gb|ABP75294.1| Exodeoxyribonuclease I subunit C [Shewanella putrefaciens CN-32]
Length = 470
Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats.
Identities = 212/467 (45%), Positives = 281/467 (60%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ ITG
Sbjct: 7 PSIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 67 ITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YAF PDGI WP +DDG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+P
Sbjct: 187 ATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA HP K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKCP
Sbjct: 247 VAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ R ID E LR LR++ ++ S++ D D LY
Sbjct: 307 FITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E W
Sbjct: 367 SGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L DE K+ L+ AL YL+ +
Sbjct: 427 REFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 470
>gi|120599334|ref|YP_963908.1| exonuclease I [Shewanella sp. W3-18-1]
gi|120559427|gb|ABM25354.1| Exodeoxyribonuclease I subunit C [Shewanella sp. W3-18-1]
Length = 472
Score = 676 bits (1746), Expect = 0.0, Method: Composition-based stats.
Identities = 212/467 (45%), Positives = 281/467 (60%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ ITG
Sbjct: 9 ESIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 69 ITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YAF PDGI WP +DDG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 129 QNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+P
Sbjct: 189 ATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISP 248
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA HP K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKCP
Sbjct: 249 VAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCP 308
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ R ID E LR LR++ ++ S++ D D LY
Sbjct: 309 FITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLY 368
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E W
Sbjct: 369 SGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRW 428
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L DE K+ L+ AL YL+ +
Sbjct: 429 REFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 472
>gi|152979065|ref|YP_001344694.1| exonuclease I [Actinobacillus succinogenes 130Z]
gi|150840788|gb|ABR74759.1| Exodeoxyribonuclease I [Actinobacillus succinogenes 130Z]
Length = 471
Score = 676 bits (1746), Expect = 0.0, Method: Composition-based stats.
Identities = 212/468 (45%), Positives = 303/468 (64%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I + +CK +DYLP PEAV +TGI
Sbjct: 5 SFFIYDYESFGINPATDRPAQFAGIRTDADFNVIGEPVMLYCKQTNDYLPSPEAVLVTGI 64
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ + FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 65 TPQECNEKGLPEPEFAASVLAEFSRPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 124
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI+W DDG SF+L+ L ANGI H NAHDA +DVYA
Sbjct: 125 NGNSRWDLLDIVRACYALRPEGIEWAYDDDGMPSFRLERLTEANGIAHENAHDAMSDVYA 184
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+ K+PKLF+Y ++ R K ++ LI++ +MTPLVHVSGM G R N L+APV
Sbjct: 185 TIAMAKLIKRKQPKLFQYFFENRGKREIEHLINVADMTPLVHVSGMLGNYRGNCTLVAPV 244
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
WHP +++VI C+LS ++ +L L+T +L +G +PVP+K VH+NKCP
Sbjct: 245 GWHPVNQNAVIVCDLSQNIDDLLTKSIEELRTALYTKKTDLAAQGQLPVPLKLVHINKCP 304
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQL 360
IL P + E+ ER GID + C ENL LRQ +R + + I+ + S +V+ +L
Sbjct: 305 ILAPANTLLPENAERLGIDRQFCSENLQKLRQSFEVRSKIEEIFREEHRFEPSDNVEIEL 364
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GFF++ D+ + + + E+L+ L F D+R+P+L F YRAR+F TL+ E+ W
Sbjct: 365 YSGFFSNNDKNNLAILRQLPIEKLAEHGLTFEDKRIPDLIFHYRARHFFKTLTRTEQLQW 424
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++R++ L + +++ ++Q+L EY E K L++ +Y Y ++
Sbjct: 425 EKYRRRKLEKEAT-DFEQRMQNLVMEYGDFEDKLNLLHQVYAYASNLL 471
>gi|15602476|ref|NP_245548.1| exonuclease I [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720883|gb|AAK02695.1| SbcB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 475
Score = 675 bits (1743), Expect = 0.0, Method: Composition-based stats.
Identities = 220/468 (47%), Positives = 306/468 (65%), Gaps = 4/468 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG D A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 8 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW
Sbjct: 68 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W ++G SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KLID N+TPLVHVSGM G R NT I P+
Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCP 301
AWHP +++VI C+L+ ++ + D+ +L + L+T EL KG++PVP+K VH+NKCP
Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 307
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQL 360
IL P E+ R GID CLENL L+ +RD+ I+N+ + S +V+++L
Sbjct: 308 ILAPAKTLLPENAARLGIDRTFCLENLQRLKLSPPIRDKVTEIFNEERHFAPSINVETEL 367
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF D+ M + E+L+ L F D R+P+L F YRAR++ ++L+ E+ W
Sbjct: 368 YNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDTRIPKLLFHYRARHYFNSLTRAEQIQW 427
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++R K L + ++ ++ LQ L E + L+ +YEY ++
Sbjct: 428 QKYRHKKLDQVALQ-FEQSLQRLIAENSENPTNLALLQKVYEYGAKIL 474
>gi|319425973|gb|ADV54047.1| Exodeoxyribonuclease I [Shewanella putrefaciens 200]
Length = 470
Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats.
Identities = 211/467 (45%), Positives = 280/467 (59%), Gaps = 5/467 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + A DRPAQFAG+R D I E F+CK A DYLP PEA+ ITG
Sbjct: 7 PSIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A G+ E EF RI FS PNTC+ GYN++RFDD +R FYRNF D Y W
Sbjct: 67 ITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YAF PDGI W +DDG+ SFKL+ L ANG+ H AHDA +DVY
Sbjct: 127 QNGNSRWDIIDLVRACYAFRPDGINWSLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LIREK+PKL+ Y ++ R K + ID+ NM PL HVS A T LI+P
Sbjct: 187 ATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
VA HP K++VI NL+ D+ DL+ Q+ R++T+ EL + +P+P+K++HLNKCP
Sbjct: 247 VAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+ R ID E LR LR++ ++ S++ D D LY
Sbjct: 307 FITSAKILDDAQASRLNIDKAFAREQYKRLRNHPELREKLAQLFEHDGESTTVDPDLMLY 366
Query: 362 D-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
GFF+ D+ M+ I T P+ L+ L L F D R+PE+ FRYRARN+P L ++E W
Sbjct: 367 SGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQESHRW 426
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + L ++Y KL++L DE K+ L+ AL YL+ +
Sbjct: 427 REFCQNRLAD---QDYLLKLENLLQNTVDDENKQKLLAALCHYLREL 470
>gi|91793639|ref|YP_563290.1| exonuclease I [Shewanella denitrificans OS217]
gi|91715641|gb|ABE55567.1| Exodeoxyribonuclease I subunit C [Shewanella denitrificans OS217]
Length = 470
Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats.
Identities = 203/469 (43%), Positives = 282/469 (60%), Gaps = 5/469 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ +DYETFG + A DRP+QFAG+R D I E F+CK A DYLP PEA+ I
Sbjct: 5 LQPTLFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKLATDYLPSPEAILI 64
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A G+ E EF RI+ FS NTC++GYN++RFDD SR FYRNF D Y
Sbjct: 65 TGITPQLANMKGIPETEFMGRINALFSQENTCVVGYNSLRFDDEVSRYGFYRNFIDPYAR 124
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++RA YAF PDGI WP ++DG SFKL+ L ANG+ H AHDA +D
Sbjct: 125 EWQNGNSRWDIIDLVRACYAFRPDGINWPRKEDGTVSFKLELLTQANGLSHEKAHDAMSD 184
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+A+ LI++ +PKL++Y + R K + ID+ M PLVHVS A + T LI
Sbjct: 185 VYATIAMAKLIKQVQPKLYDYYFSLRRKQAVAAQIDVLKMQPLVHVSSKISALNACTTLI 244
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A+HP K++V+ NL+ D+ +L + ++A R++TS +L +P+P+K++HLNK
Sbjct: 245 APMAYHPTNKNAVLCVNLAMDISPLLELSAEEIAARMYTSRADLAPDELPIPLKQIHLNK 304
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CP + + R D E L+Q LR++ ++ + + D D
Sbjct: 305 CPFIASPKLLDDDLTSRLNFDKAFAREQYKRLKQHPELREKLVGVFEQTKEFNHSDPDLM 364
Query: 360 LY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GFF+ D+ MD I +T P+ L+ L+L F D R+ E+ FRYR RN+P L E
Sbjct: 365 LYGGGFFSHADKAKMDIIRQTQPQNLAALDLKFDDNRIAEMLFRYRGRNYPELLDHDESV 424
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W E + L + +Y KL++L DE K+ L+ AL +YLQ +
Sbjct: 425 RWREFCQSRLADA---DYVIKLENLLEASAQDEHKQKLLRALCQYLQAL 470
>gi|329120482|ref|ZP_08249147.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
gi|327461940|gb|EGF08270.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
Length = 521
Score = 671 bits (1733), Expect = 0.0, Method: Composition-based stats.
Identities = 220/469 (46%), Positives = 315/469 (67%), Gaps = 4/469 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F IYDYETFG A DRPAQFAG+R D + + +CK +DYLP PE+V IT
Sbjct: 53 PTFFIYDYETFGIHPARDRPAQFAGIRTDPDFNPVADPITLYCKQTNDYLPSPESVLITS 112
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+ + GV E EF+ RI FS PNTCI+GYNNIR+DD +R+ FYRNF D Y +S+
Sbjct: 113 ITPQECNQKGVPEPEFAARICAEFSQPNTCIMGYNNIRYDDEITRHTFYRNFLDPYEYSY 172
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDV+RA +A P+GI+WP ++G F+L+ L ANGIEH +AHDA +DVY
Sbjct: 173 QNGNSRWDLLDVVRACHALRPEGIEWPRDENGLPVFRLEQLTAANGIEHAHAHDALSDVY 232
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LI++K+P+LF + ++ R K L +IDI+ TPLVH+SGMFG +R NTALIAP
Sbjct: 233 ATIALAKLIKQKQPRLFRFFFENRGKAPLAAMIDIRRHTPLVHISGMFGNARRNTALIAP 292
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKC 300
++WHP K++VI C+LS D+R +L++ L +RL+T + L +G +PVP+K VH+NKC
Sbjct: 293 LSWHPSNKNAVIACDLSADLRDLLNLNADTLRERLYTPKETLLAQGALPVPLKLVHINKC 352
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
PIL P + + E ER GID+ C NL L+ +R + + I+ + + S +V+++
Sbjct: 353 PILTPRNVLRDEDAERLGIDNTICQNNLAALQNAPEIRQKVQQIFRETRQFAPSDNVETE 412
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY+GFF+ D+Q + + PEQL+ LPF D R+P+L F YRAR+F TL+ E+
Sbjct: 413 LYNGFFSPADKQNLATLRTLPPEQLANHGLPFQDPRIPQLLFHYRARHFYPTLTRAEQIQ 472
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W ++R+K L + + ++ LQ+L+ + + K L+ A+Y+Y + ++
Sbjct: 473 WQKYRRKKL-EAALPDFSQSLQNLAEQNADNPDKLLLLQAVYQYAERLL 520
>gi|239815634|ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110]
gi|239802211|gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110]
Length = 479
Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats.
Identities = 196/481 (40%), Positives = 282/481 (58%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ +DYETFG DRP+QFA +R D + +I + +CKPA DYLP PEA I
Sbjct: 1 MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ L G+ E F+ +I + FS P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQLCLERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R YA PDGI+WP ++DG SFKL+DLA ANG+ H +AHDA +D
Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM----TPLVHVSGMFGASRSN 236
V AT+AL LIRE++PKLFE+ + K+++ + + M P +HVSGMF R
Sbjct: 181 VRATIALARLIRERQPKLFEFAFGLHKKDRVASELGLPAMRETARPFLHVSGMFPVERGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
++ P+A HP K+ +I +L+ D +DLD L RLFT +L +G+V +P+K +
Sbjct: 241 LGVMWPLASHPTNKNELIAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVVRLPVKGI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
HLNK P+++ + ERW +D L + + R ++ + +Y +P +
Sbjct: 301 HLNKSPMVVGNLRTLAPAMAERWNVDLDAALRHAAIARDLPDMSAIWSQVYARPKEAVP- 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
DVD LY GF + DR+ ++++ +PE+L+ F D RL E+ FRYRARN+P LS
Sbjct: 360 DVDEDLYGGFVGNGDRRRLNQLRALSPEELAKDRTGFDDGRLEEILFRYRARNWPELLSS 419
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W R L + IE +++ +LS DE E ++ ALYEY + + P
Sbjct: 420 EEAERWEALRAARLFKGEGGARTIEMLFSEVDALSE--TADERGEEILGALYEYAEAIAP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|311695266|gb|ADP98139.1| exonuclease I [marine bacterium HP15]
Length = 481
Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats.
Identities = 209/479 (43%), Positives = 292/479 (60%), Gaps = 10/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL DG EAEF +I++ FS P TC++GYN++RFDD +R+ YRN D Y
Sbjct: 61 TGITPQKALEDGFPEAEFIAQINEAFSQPGTCVVGYNSLRFDDEVTRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI WP ++DG+ SFKL++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFKLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLF+++ ++K+ R ++D M P+ H+S + ASR AL+
Sbjct: 181 VEATIAMAKLIKEKQPKLFDFVLQNKDKHSARAMLDTAAMKPVFHISAKYPASRGCCALV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
APVA HP K+ VI +L D + + Q+ +R+FTS EL +G+ P+K V LNK
Sbjct: 241 APVAEHPSNKNLVIVYDLREDPTELINASAEQIRERVFTSQAELGEGVSRFPLKGVQLNK 300
Query: 300 CPILMPID---YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
CP+L P + E E +D NL +LR+ +L R +++P+ S D
Sbjct: 301 CPVLAPANMLSTLSPERLEELALDGDTLRANLAMLRKAPDLPSRIAEAFDQPHESDLTDP 360
Query: 357 DSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D QLY GF + DR+ ++ +L E L L + F D RL EL FRYRARN+P +L +
Sbjct: 361 DEQLYAGGFISKADREKLNWVLEQPVETLGELEVTFEDDRLQELLFRYRARNYPGSLVGE 420
Query: 416 EKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E + W E R + L + +E + +LQ L+ + + K ++ L+ Y + +IP
Sbjct: 421 EMERWEEFRSQRLMHPKKGWRSLEAFAQELQRLAADPELTPQKRHILEDLHLYGESLIP 479
>gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille]
gi|151280694|gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille]
Length = 476
Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats.
Identities = 192/477 (40%), Positives = 276/477 (57%), Gaps = 10/477 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ F+ +DYETFG DRPAQFA +R D + +I + +CKPA+D+LPDP++ IT
Sbjct: 3 THTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ L GV E EF+ I + S T +GYN IRFDD +R +F+RN D Y
Sbjct: 63 GITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWD+LDV+R YA P+GI WP DG SF+L+ L NGI H AHDA +DV
Sbjct: 123 WQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIRE++PKLF++ K+++ I + P +H++GM A R A++
Sbjct: 183 RATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAVVW 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A HP K+ VI +LS D LD+ + R+F+ D L +G+ +PIK +HLNK
Sbjct: 243 PLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLNKS 302
Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
PI++ + E E+WGID L + + ++ ++ ++ +P +++ DVD
Sbjct: 303 PIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAA-DVDED 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + DR+ + + +PE L+ FSD RL E+ +RYRARNFPHTL+E+E+Q
Sbjct: 362 LYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQR 421
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
W +HR L IE ++ LS DE E ++ ALY+Y + + P
Sbjct: 422 WEDHRVARLFDGEGGARTIETLFAEIDQLSE--TADERGEEILGALYDYAEAIAPSR 476
>gi|83647678|ref|YP_436113.1| exonuclease I [Hahella chejuensis KCTC 2396]
gi|83635721|gb|ABC31688.1| Exonuclease I [Hahella chejuensis KCTC 2396]
Length = 483
Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats.
Identities = 216/480 (45%), Positives = 293/480 (61%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F YD+ET+G D DRP+QFAGVR D IE V +C PA+D LP PEA I
Sbjct: 1 MADTFYWYDFETWGADPRRDRPSQFAGVRTDLDLNPIEKPLVMYCMPAEDVLPQPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL +GV EAEF R IH+ FS P TC++GYN+IRFDD +RN YRNFYD Y
Sbjct: 61 TGITPQKALSEGVSEAEFIRLIHEQFSRPGTCVVGYNSIRFDDEVTRNTLYRNFYDPYSR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA PDGI WP +G SF+L++L ANG+ H AHDA +D
Sbjct: 121 EWRNGNSRWDVIDMVRLTYAMRPDGINWPMNAEGVPSFRLEELTKANGVTHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+A+ LI+ +PKL++Y+ +RNK L L+DI+ M PL HVS F A+ A++
Sbjct: 181 VYATIAVARLIKTAQPKLYDYVLGHRNKKVLEGLVDIERMKPLFHVSSKFPAALGCCAMV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A HP + VI +L D + L ++ +R+FTS+++L +G +P+K VHLNK
Sbjct: 241 APIARHPTNPNGVIVYDLRADPSTWTHLPVEKIRERIFTSNEDLPEGAERIPLKVVHLNK 300
Query: 300 CPILMPIDYCKKEHFERW---GIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
CPIL+ K ER +D + +L LRQ N++ R ++N+P S D
Sbjct: 301 CPILVESKILKTMDPERLRGFQLDGDKLRSHLQALRQAENIQQRVAEVFNEPMDDSETDP 360
Query: 357 DSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D LY GFF++ DR++M I +PE L L LPF D RL E+ FRYRARNFP TL+E+
Sbjct: 361 DLMLYSGGFFSNNDRELMTFIHEQSPEVLGELELPFEDPRLQEMLFRYRARNFPGTLNEE 420
Query: 416 EKQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E + W +R L + Y KL+ L+ + ++ L+ Y + +IP
Sbjct: 421 EMEKWERYRYHRLAGESSGASISFQAYFKKLEQLAANPDITPFQLSILQDLHLYGESIIP 480
>gi|251792518|ref|YP_003007244.1| exonuclease I [Aggregatibacter aphrophilus NJ8700]
gi|247533911|gb|ACS97157.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus NJ8700]
Length = 464
Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats.
Identities = 207/459 (45%), Positives = 299/459 (65%), Gaps = 4/459 (0%)
Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDG 72
FG + A DRPAQF G+R D + I + V +CK +DYLP PEAV +TGITPQ+ G
Sbjct: 6 FGVNPATDRPAQFGGIRTDANFNIIGESVVLYCKQTNDYLPAPEAVLVTGITPQECNEKG 65
Query: 73 VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLL 132
+ E +F+ RI Q FS PNTC++G+NNIR+DD +R FYRNF D Y +SW NGNSRWDLL
Sbjct: 66 LPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLL 125
Query: 133 DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIR 192
D++RA YA PDG++WP D+G SF+L+ L ANGIEH NAHDA +DVYAT+ + LI+
Sbjct: 126 DLVRACYALRPDGVEWPLDDEGMPSFRLEKLTEANGIEHTNAHDAMSDVYATIEMAKLIK 185
Query: 193 EKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDS 252
+K+PKLF+Y ++ R K ++ KLI+ MTPLVHVSGM G R NT LIAP+AWHP K++
Sbjct: 186 QKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPLAWHPTNKNA 245
Query: 253 VIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKCPILMPIDYCK 310
VI C+L+ ++ + +L + L+T + L G++ VP+K +H+NKCPI+ P
Sbjct: 246 VIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLLVPLKLIHINKCPIVAPEKTLL 305
Query: 311 KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLYDGFFADVD 369
++ ER GID + C +N L ++R + I+ + +S +V+++LY+GFF+D D
Sbjct: 306 SQNAERLGIDRELCAQNQQRLLASKDIRQKVMDIFQQDREFEASDNVETELYNGFFSDAD 365
Query: 370 RQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLT 429
+ M + PE+L+ NL F D R+P+L F YRAR+F TL+ E+ W ++ +K L
Sbjct: 366 KNNMAILRTLEPEKLAEHNLRFQDPRIPQLLFHYRARHFYRTLNRAEQIKWQKYCRKKL- 424
Query: 430 RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+ I ++ LQ L+ + + +E L+ +YEY +I
Sbjct: 425 DAEILRFEQSLQELAAQNEHNEENLTLLQKVYEYGNKII 463
>gi|238898974|ref|YP_002924656.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466734|gb|ACQ68508.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 490
Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats.
Identities = 241/470 (51%), Positives = 322/470 (68%), Gaps = 4/470 (0%)
Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ + F IYDYETFG+ LDRPAQFAG+R D ++ +E V +C PA DYLPDPEAV
Sbjct: 1 MSQNLTFYIYDYETFGQHPGLDRPAQFAGIRTDLEFHPVEDPLVLYCSPAQDYLPDPEAV 60
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
ITGITPQKAL +GV EA F+ +IH+ S PNTCI+GYNNIRFDD +SR+IFYRNFYD Y
Sbjct: 61 MITGITPQKALSEGVNEARFAHQIHRVLSQPNTCILGYNNIRFDDEFSRHIFYRNFYDPY 120
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+SW NGNSRWDLLD+ RA YA P+GI WP + G SFKL+ L AN I+H AHDA
Sbjct: 121 AYSWKNGNSRWDLLDLTRACYALRPEGIIWPKNEQGLPSFKLEHLTKANSIKHTQAHDAL 180
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
+DVYAT+AL L++ +P+LF Y Y +R+K+++ LI I +M PLVHVSGMF + +T+
Sbjct: 181 SDVYATMALAKLLKSAQPRLFHYFYAHRSKHKINTLIHIGDMAPLVHVSGMFSPEKGHTS 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHL 297
I P+AWHP +++VI C+L+GD+ L + L +RL+T D+L VP+K VH+
Sbjct: 241 WILPIAWHPDNQNAVIVCDLAGDITPLLSLKADMLRERLYTPRDQLGSECAQVPLKLVHI 300
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDV 356
NKCPIL P +E+ +R GID + CL+NL LLR+ ++R++ AI++ + +V
Sbjct: 301 NKCPILAPAKTLSRENAQRLGIDQQHCLKNLELLRRYPDIREKMVAIFDGQKPFPKVNNV 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+QLYDGFF D DR + I +T PE L TL + F D RL LFFR+RARN+P TLSEK+
Sbjct: 361 DAQLYDGFFNDFDRAEISTIQKTLPENLPTLKIVFQDPRLETLFFRFRARNYPETLSEKD 420
Query: 417 KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
+Q W H +L+ I+EY KL+ + EY+ + K+ LI+ L +Y
Sbjct: 421 QQRWKAHFNTVLSPGIIKEYLLKLKEMLLEYEDNPEKQTLIHLLIQYANQ 470
>gi|330720654|gb|EGG98904.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC2047]
Length = 478
Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats.
Identities = 203/472 (43%), Positives = 292/472 (61%), Gaps = 8/472 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YD+ETFG D DRP QFAG+R D Q+ I +VFFCKPADD LP PEA ITGI
Sbjct: 2 SFYWYDFETFGADPFRDRPCQFAGIRTDEQFNIIGDPDVFFCKPADDVLPHPEACLITGI 61
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+AL++GV EAEF RIH+ F+ P TC+ GYN+IRFDD +RN YRNFYD Y W
Sbjct: 62 TPQQALKEGVSEAEFIARIHEQFAEPGTCVAGYNSIRFDDEVTRNALYRNFYDPYAREWQ 121
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+GNSRWD++D++R A P+GI WP +DG+ SFKL+ L ANGI H AHDA +DV+A
Sbjct: 122 HGNSRWDIIDMVRLTRALRPEGINWPEHEDGSPSFKLEQLTAANGISHEAAHDALSDVWA 181
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ L LI+ K+PKL++Y+Y +R+K + + +++ P++H+S MF A R A++ P+
Sbjct: 182 TIELAKLIKTKQPKLYDYVYKHRDKRLVDQQLNVVAQKPVLHISSMFPADRGCAAIVVPL 241
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A K++V +LS D L + Q+A+R+FT +++ +G+ VPIK VH+NKCPI
Sbjct: 242 ARDVVNKNAVYVYDLSVDPEPLLRLSAEQIAERIFTRREDMPEGVERVPIKAVHINKCPI 301
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
+ P++ E ER GID C NL ++ + ++ +A+++ + D D LY
Sbjct: 302 VAPVNVVSAEAAERLGIDLTACRANLEHIKAAAGIAEKVQAVFSSREFETPDDPDQALYS 361
Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF+ DRQ+M+ + + PEQLS LPF D RLP++ FRYRARN+P TLS+ E+ W
Sbjct: 362 GGFFSSHDRQLMEELRQMTPEQLSAAKLPFRDARLPDMLFRYRARNYPATLSDDERAQWQ 421
Query: 422 EHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
R+ ++ Y ++ L + ++ ++ L Y +
Sbjct: 422 VFRRSCFDDEKIGSRLTLDSYYQRIDELMNAPQTTLEQKQILIQLQAYGVSL 473
>gi|319793918|ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS]
gi|315596381|gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS]
Length = 479
Score = 664 bits (1715), Expect = 0.0, Method: Composition-based stats.
Identities = 192/481 (39%), Positives = 285/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ +DYETFG DRP+QFA +R D + +I + +CKPA DYLP PEA I
Sbjct: 1 MNHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ L G+ E +F+ +I + FS P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQVCLERGIPEHDFAAQIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R YA P+GIQWP ++DG SFKL+DLA ANG+ H +AHDA +D
Sbjct: 121 EWQNDCGRWDLLDVVRLTYALRPEGIQWPKKEDGKPSFKLEDLARANGLLHESAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM----TPLVHVSGMFGASRSN 236
V AT+AL LIR+K+PKLF++ + K+++ + + M P +HVSGMF R
Sbjct: 181 VRATIALARLIRDKQPKLFDFAFGLHKKDRVASELGLPAMRETAKPFLHVSGMFSVERGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
A++ P+A HP K+ ++ +L+ D +DLD L RLFT +L +G++ +P+K +
Sbjct: 241 IAVMWPLASHPTNKNELLAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVLRLPVKGI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
HLNK P+++ + ERWGID + + + R ++ + +Y +P ++
Sbjct: 301 HLNKSPMVVGNLRTLAPPMAERWGIDLDTAMRHAAIARDLPDMSAIWSQVYARPKEATP- 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
DVD LY GF + DR+ ++++ + +L+ F D RL E+ FRYRARN+P +L+
Sbjct: 360 DVDEDLYGGFVGNADRRRLNQLRGLSAGELAKDRTGFDDGRLEEIVFRYRARNWPESLAP 419
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W R L IE+ +++ +LS DE E ++ ALYEY + + P
Sbjct: 420 EETERWEALRVARLFHGEGGARTIEQLFSEVDALSE--TADERGEEILGALYEYAEAIAP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|33152477|ref|NP_873830.1| exonuclease I [Haemophilus ducreyi 35000HP]
gi|33148700|gb|AAP96219.1| exonuclease I [Haemophilus ducreyi 35000HP]
Length = 513
Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats.
Identities = 213/467 (45%), Positives = 296/467 (63%), Gaps = 4/467 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YDYE+FG + A DRPAQFAG+R DR++ I +F+CK +DYLP EAV +TGI
Sbjct: 6 TFFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQTNDYLPSAEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
PQ G+ E EF++RIH FS PNTCIIGYNNIR+DD +R F+RNFYD Y + W
Sbjct: 66 APQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNNIRYDDEMTRYTFFRNFYDPYEYCWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P GI+WP + SFKL+ L AN I H NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPSGIEWPKNEKDEPSFKLEHLTKANAIAHQNAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + LI++K+ KLF++ ++ R+K L KLID +TPLVHVSGM G R NTALI P+
Sbjct: 186 TIEIAKLIKQKQRKLFDFFFENRSKKALEKLIDPAELTPLVHVSGMLGNYRGNTALIVPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
AWHP +++V+ C+LS D++ + + L +RL+T D L + PVP+K VHLNKCPI
Sbjct: 246 AWHPTNQNAVVVCDLSSDIQGLLNDTAEVLKQRLYTKRDALAEHESPVPLKLVHLNKCPI 305
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPY-TSSSQDVDSQL 360
L P E+ R ID +CL NL L+ Q +R++ I+N + S +V++ L
Sbjct: 306 LAPAKTLLAENAMRLAIDRSQCLLNLAKLQAQKAVVREKVIEIFNDERIFAPSNNVETTL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YD FF++ D+ + + PEQL+ L F+D+R+ L F YRAR+FP+TL+ E+ W
Sbjct: 366 YDSFFSNGDKNNLAILRTLKPEQLAEHGLKFADKRVEPLLFHYRARHFPNTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ + + ++ E++ ++ +L Y K L+ L Y +
Sbjct: 426 QKYCHQQI-DAKTEQFSQEIANLFERYADHADKVKLLEDLTAYATQL 471
>gi|119476956|ref|ZP_01617237.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
gi|119449763|gb|EAW31000.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
Length = 478
Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats.
Identities = 199/477 (41%), Positives = 287/477 (60%), Gaps = 9/477 (1%)
Query: 1 MTN-HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
MT+ F +DYETFG D A DRP+QFAGVR D + I V FCKPA D LP PEA
Sbjct: 1 MTDFSFYWHDYETFGADPARDRPSQFAGVRTDSDFNIIGEPLVIFCKPAADILPQPEACL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ+AL GV EAEF R+IH FS P TC +GYN++RFDD SR YRNFYD Y
Sbjct: 61 ITGITPQQALEQGVCEAEFIRQIHAEFSQPGTCAVGYNSVRFDDEVSRYTLYRNFYDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W NGNSRWD++D++R A P+GI WP+ D+G SFKL+ L ANGI H +AHDA +
Sbjct: 121 REWQNGNSRWDIIDMVRVCCALRPEGINWPTHDNGMPSFKLEQLTAANGISHESAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV+AT+A+ LI++K+PKLF+YL R+K+++ ++++ P++H S M+ A R T L
Sbjct: 181 DVHATIAMAKLIKQKQPKLFDYLLKLRSKHEVSAMLNVAEKLPVLHTSAMYPAHRFCTTL 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
I PVA HP K+ VI +LS D L++ Q+ +RL+T EL +G +P+K +H+N
Sbjct: 241 IMPVAVHPTNKNGVICYDLSVDPAPLLSLNAGQITERLYTPASELPEGAARIPLKTIHIN 300
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
+CP+++ + ER +D + ++ L + L ++ ++ + D D
Sbjct: 301 RCPVVVTSKLMDEAVAERIQLDLPKARKHYQALVKTQGLAEKLSEVFAERSFPERTDPDV 360
Query: 359 QLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GFF+ D+ +M ++ ++P++L + F D RL ++ FRYRARNFP +LS +E
Sbjct: 361 MLYSGGFFSQNDKAVMAQVRCSSPDELREHSFVFEDARLDDMLFRYRARNFPESLSAEEL 420
Query: 418 QDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
Q W E R LT +EE+ Q+L + + ++ L +Y ++
Sbjct: 421 QQWHEFRYYRLTDPEADVSISMEEFLETTQALLNDEACSDRDRAILEELQDYSDSLL 477
>gi|332306455|ref|YP_004434306.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332173784|gb|AEE23038.1| Exodeoxyribonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 476
Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats.
Identities = 205/474 (43%), Positives = 289/474 (60%), Gaps = 8/474 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +DYET+G + D QFAG+R D I + F + +DYLP P+A IT
Sbjct: 3 TPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ +LRDG++E EF +IH FS TC+ GYNNIRFDD +R YRNFYD Y
Sbjct: 63 GITPQHSLRDGMIEPEFIEKIHHEFSQAETCVAGYNNIRFDDEVTRYTLYRNFYDPYERE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD++DV+RA YA PDGI+WP ++DG+ SFKL+DL+ AN IEH AHDA +DV
Sbjct: 123 WRNGNSRWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIEHSAAHDAMSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L++ +PKL++YL++ R K + LID Q TPLVH+S A +A
Sbjct: 183 YATIGVAKLVKTAQPKLYDYLFNLRLKKNVIALIDTQAHTPLVHISSKLPAINGCCTWVA 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A HP K++ I NLS D++ L ++ ++L+T+ + L +G +PIK VH+NK
Sbjct: 243 PIAQHPTNKNAFIMLNLSLDIQPLLALSVEEIIQKLYTASNMLEEGEQRLPIKLVHVNKS 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P+L P +E+ R GID + CL+NL LL+Q L ++ +++ Q+ D L
Sbjct: 303 PVLAPAKTLNEENAARLGIDRQACLQNLQLLKQHPELVEKLIKVHHSNTEHVPQEADHSL 362
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF+ DR +MD++ ++ PEQL+ L LPF D RL L F Y+ARNFP +L+++E Q
Sbjct: 363 YSGGFFSPKDRALMDQVRQSTPEQLADLALPFEDSRLDNLLFYYKARNFPTSLNDQEMQR 422
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W HRK L + +Y L+ L +Y + K ++ ALY Y + +
Sbjct: 423 WQNHRKFRLLDDSSPSSITMSDYVQTLELLCEQYHSNSDKLAILKALYTYAEQL 476
>gi|308049114|ref|YP_003912680.1| exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
gi|307631304|gb|ADN75606.1| Exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
Length = 470
Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats.
Identities = 211/469 (44%), Positives = 294/469 (62%), Gaps = 7/469 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G DVA DRPAQFAG+R D IE ++C+ DYLP PEA+ +TG
Sbjct: 5 ETLLWHDYETWGADVARDRPAQFAGIRTDLDLNIIEEPVEYYCRLPADYLPKPEAMLVTG 64
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA R G VEA+F R+H+ + PNTC +GYN+IRFDD +R YRNF+D Y W
Sbjct: 65 ITPQKANRLGEVEAQFIARVHEQMARPNTCTVGYNSIRFDDEITRYALYRNFFDPYAREW 124
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++RA YA P+GI WP R+DGA SFKL+ L ANGI H +AHDA +DV
Sbjct: 125 QNGNSRWDIIDLVRACYALRPEGIVWPEREDGAPSFKLEHLTAANGIGHDSAHDAVSDVK 184
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LI+ +PKL+E+ + RNK IDI + PL+HVS F AS+ +L+ P
Sbjct: 185 ATIALAKLIKTTQPKLYEWAFRLRNKRFAASQIDILALKPLLHVSSRFPASQGCASLVLP 244
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKCP 301
+AWHP K++V +L+ D + D L +L+ + +G VP+K VH+NK P
Sbjct: 245 MAWHPENKNAVACVDLAMDPTPLLEWDIETLKAKLYQKAVDRTEGEPRVPVKLVHMNKSP 304
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNK--PYTSSSQDVDS 358
+ P + + ER G+D C E+ LLRQ +R++ +++ P + D
Sbjct: 305 FIAPASSLEDANAERLGLDKAACREHYKLLRQHHAEVREKLHGLFSDDAPPQREPDNPDV 364
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY GFF++ DR M+ + TAPE L+ L F D RLP+LFFRYRARN+P+TLSE E++
Sbjct: 365 QLYGGFFSEADRAQMELVRSTAPEHLAALEPQFVDPRLPKLFFRYRARNYPNTLSEAEQR 424
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W++H ++ L + +Y + L+ L ++ DE K L+ AL YLQ +
Sbjct: 425 RWVQHCQQSLADA---DYVHNLEQLFEQHSSDEEKMKLLTALGHYLQSL 470
>gi|145636088|ref|ZP_01791758.1| exonuclease I [Haemophilus influenzae PittHH]
gi|145270610|gb|EDK10543.1| exonuclease I [Haemophilus influenzae PittHH]
Length = 440
Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats.
Identities = 211/432 (48%), Positives = 285/432 (65%), Gaps = 3/432 (0%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D MTPLVHVSGM G R N +AP+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKCP 301
AWHP ++++I C+L+GD+ + +L L+T EL+ G+ VP+K VH+NKCP
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQL 360
IL P E R GID + CL+NL LR ++R++ I+N+ +S D V+++L
Sbjct: 306 ILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETEL 365
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+ E+ W
Sbjct: 366 YNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQIKW 425
Query: 421 LEHRKKMLTRSR 432
++R+ L +S
Sbjct: 426 KKYRQNKLEKSS 437
>gi|254449147|ref|ZP_05062598.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
gi|198261261|gb|EDY85555.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
Length = 474
Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats.
Identities = 203/474 (42%), Positives = 298/474 (62%), Gaps = 6/474 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ F YD ETFG D R AQFAG R D I V +C+P+ D+LPDPEA I
Sbjct: 1 MSQTFYWYDLETFGTDPKTTRIAQFAGQRTDADLNPIGDPLVIYCQPSPDFLPDPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ E+EF +RIH+ FS PNTC++GYN++RFDD + R FYRNF D Y
Sbjct: 61 TGITPQVAAREGLPESEFIQRIHREFSQPNTCVLGYNSLRFDDEFMRYGFYRNFIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG SRWDL+DV+R A P+GI+WP +DG S KL+DL ANG+ H AHDA +D
Sbjct: 121 EWQNGCSRWDLIDVVRLTRALRPEGIEWPFHEDGTPSNKLEDLTQANGLVHSKAHDAYSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
+ AT+A+ I+EK+PKL+++ R+K +L + + P+VH+SGM+G R++TA++
Sbjct: 181 IEATIAVAKRIKEKQPKLWQFCLHNRDKRKLAGQLKVAAKEPVVHISGMYGNERASTAIV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
PVA HP K+ +I +L+ D LDS +A+R+FT ++L +P+K VHLNKC
Sbjct: 241 VPVARHPSNKNGIIVYDLAHDPAELIALDSAAIAERVFTRREDLGDKERLPLKTVHLNKC 300
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P++ P+ +E +R GID + + + L+ +L R +A + + D D L
Sbjct: 301 PVIAPLSTLSEEAAQRLGIDIEEQVARIETLKPIDDLEQRVQAAFGQQQFDPITDPDQSL 360
Query: 361 Y-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GF D D+ +M +I +PEQLS L+LPF D+RLPEL FR+RARN+P +L E+Q
Sbjct: 361 YGGGFIGDSDKALMRQIHSASPEQLSNLDLPFQDKRLPELLFRFRARNYPMSLDSDEQQR 420
Query: 420 WLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W E ++ + + +++++NKL +L+ EY+ D+ K ++ L +Y++ +
Sbjct: 421 WAELCREHIHDGKSGYLNLDQFQNKLMALAQEYEHDDSKLHVLKQLADYVEHIA 474
>gi|309780540|ref|ZP_07675287.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
gi|308920695|gb|EFP66345.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
Length = 479
Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats.
Identities = 190/478 (39%), Positives = 286/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 3 VTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 63 TGITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 123 EWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSD 182
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR +P+LF++ R K+++ I PL+H+SGM+G R A++
Sbjct: 183 VRATIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVV 241
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP K+ +I +L+ D D+D + +R+FT +L +G +PIK +H+NK
Sbjct: 242 WPLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRTADLAEGTTRLPIKSIHINK 301
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWGID + + + ++R+ ++ +Y + + +DVD
Sbjct: 302 SPIVISNMKTLQPAQAERWGIDFATIERHAAIAQGAPDMRETWRQVYAREL-EAIEDVDQ 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 361 NLYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYE 420
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
W + R + L R E + +LQ L E GD + ++ LY+Y Q ++P
Sbjct: 421 LWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478
>gi|187930471|ref|YP_001900958.1| exonuclease I [Ralstonia pickettii 12J]
gi|187727361|gb|ACD28526.1| Exodeoxyribonuclease I [Ralstonia pickettii 12J]
Length = 479
Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats.
Identities = 189/478 (39%), Positives = 284/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 3 VTPTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 63 TGITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 123 EWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSD 182
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR +P+LF++ R K+++ I PL+H+SGM+G R A++
Sbjct: 183 VRATIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVV 241
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP K+ +I +L+ D +D + +R+FT +L +G +PIK +H+NK
Sbjct: 242 WPLGGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHINK 301
Query: 300 CPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWGID + + + ++R+ ++ +Y + +DVD
Sbjct: 302 SPIVISNMKTLQPAQAERWGIDFAMIERHAAIAQGAPDMRETWRQVYAREL-EPIEDVDQ 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 361 NLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYE 420
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
W + R + L R E + +LQ L E GD + ++ LY+Y Q ++P
Sbjct: 421 RWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQQIVP 478
>gi|241664639|ref|YP_002982999.1| exonuclease I [Ralstonia pickettii 12D]
gi|240866666|gb|ACS64327.1| Exodeoxyribonuclease I [Ralstonia pickettii 12D]
Length = 479
Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats.
Identities = 190/477 (39%), Positives = 284/477 (59%), Gaps = 11/477 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + IT
Sbjct: 4 TPSFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+ R G+ E F++ I + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 64 GITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWDLLDV+R +A P+GIQWP+ +DG SFKL+ L+ ANG+ H AHDA +DV
Sbjct: 124 WQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIR +P+LF++ R K+++ I PL+H+SGM+G R A++
Sbjct: 184 RATIALARLIRNAQPRLFDFCLALRKKDRVAAEIG-DAPRPLLHISGMYGVERGCMAVVW 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+ HP K+ +I +L+ D D+D + +R+FT +L +G +PIK +H+NK
Sbjct: 243 PLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRAADLAEGTTRLPIKSIHINKS 302
Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
PI++ + + ERWGID + + + ++R+ ++ +Y + +DVD
Sbjct: 303 PIVISNMKTLQPGQAERWGIDFATIERHAAIAQGAPDMRETWRQVYAREL-EPIEDVDQN 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + DR++++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 362 LYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEEYEL 421
Query: 420 WLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
W + R + L R E + +LQ L E GD + ++ LY+Y Q ++P
Sbjct: 422 WEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQQIVP 478
>gi|89095382|ref|ZP_01168297.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
gi|89080350|gb|EAR59607.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
Length = 488
Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats.
Identities = 193/473 (40%), Positives = 288/473 (60%), Gaps = 7/473 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F +DYETFG D D P QFAG+R D IE + +CKP+DD LP PEA ITGI
Sbjct: 7 TFYWHDYETFGADPKRDWPVQFAGIRTDEHLNVIEEPLMVYCKPSDDQLPYPEACLITGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQKA+ +G+ EA+F +IH+ + P TC +GYN+IRFDD +R YRNF+D Y W
Sbjct: 67 TPQKAMDEGLCEADFFAKIHEQLARPGTCGVGYNSIRFDDEVTRYGLYRNFFDPYAREWQ 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NG SRWD++D++R P+GI WP +DG S +L+DL +ANGI+H +AHDA +DVYA
Sbjct: 127 NGCSRWDIIDMLRLTRTLRPEGIVWPKYEDGTPSLRLEDLTVANGIDHGHAHDALSDVYA 186
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + L+REK+PKLF Y+ + R+K ++ L+D Q+ P++H+S + NTA++AP+
Sbjct: 187 TIEMAKLVREKQPKLFNYVLNNRSKQSIQSLLDTQSFKPVLHISSRYAIEYGNTAVVAPI 246
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPI 302
A HP K+ VI +L + L + +L + L+T EL + +K+VH+NKCPI
Sbjct: 247 ATHPVNKNGVIVWDLRFNPEPLMQLSAEELRQLLYTPRAELDDSDPRIALKQVHINKCPI 306
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
+ P E R I+ +C +L +LR T R++ IY++ + D D LY
Sbjct: 307 IAPAGMISSEEAARLQINGDQCRAHLQMLRSYTGFREKLADIYSESPFDTDSDPDQMLYS 366
Query: 363 -GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
GFF DRQ+MD++ + P+QL+ L+LPF D RL E+ RY+ARN PH L+ +++ W
Sbjct: 367 GGFFTPSDRQLMDQVRESGPDQLAELDLPFQDPRLEEMLLRYKARNCPHVLNHEDQMQWE 426
Query: 422 EHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+R++ L + +E++ +L L E + DE ++ ++ L Y + + P
Sbjct: 427 TYRQRKLLKGEGGHLTMEKFYQRLNELYAEAETDEKRKHILEELAVYAEAIYP 479
>gi|299065319|emb|CBJ36488.1| exodeoxyribonuclease I [Ralstonia solanacearum CMR15]
Length = 477
Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats.
Identities = 190/479 (39%), Positives = 289/479 (60%), Gaps = 11/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F+ +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 1 MTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ L+ G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 61 TGITPQQCLKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DDG SFKL+ L+ ANG++H AHDA +D
Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNDDGKPSFKLEHLSQANGLQHEAAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R +P+LF++ + R K ++ I PL+H+SGM+G R A++
Sbjct: 181 VRATIALARRVRTAQPRLFDFCFALRKKERVLAEIG-DAPRPLIHISGMYGVDRGCMAVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ +I +LS D +D + +RLFT +L +G +PIK +H+NK
Sbjct: 240 WPLGWHPTNKNELIAWDLSFDPSELFHMDVAAIRERLFTRSADLTEGTTRLPIKSIHINK 299
Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + + +LR+ ++ +Y + +DVD
Sbjct: 300 SPIVIGNLKTLQPAQAERWGVDFAAIERHAGIAQGAPDLRETWRQVYAREL-EPIEDVDQ 358
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL RYRARNFP TL+E E +
Sbjct: 359 NLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLLRYRARNFPDTLTEDEHE 418
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKG--DEGKEGLINALYEYLQWVIPK 470
W + R + L R ++ Y +++ L+ E D EG+++ALY+Y + V P+
Sbjct: 419 QWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALYDYAEMVAPE 477
>gi|109898489|ref|YP_661744.1| exodeoxyribonuclease I [Pseudoalteromonas atlantica T6c]
gi|109700770|gb|ABG40690.1| Exodeoxyribonuclease I subunit C [Pseudoalteromonas atlantica T6c]
Length = 476
Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats.
Identities = 205/474 (43%), Positives = 292/474 (61%), Gaps = 8/474 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +DYET+G + D QFAG+R D I + F + +DYLP+P+A IT
Sbjct: 3 TPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPNPQACLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ +LRDG+VE +F ++IHQ FS P TC+ GYNNIRFDD +R YRNFYD Y
Sbjct: 63 GITPQHSLRDGMVEPDFIQKIHQEFSAPETCVAGYNNIRFDDEVTRYTLYRNFYDPYGRE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD++DV+RA YA P+GI+WP +DDG+ SFKL+DL+ AN IEH AHDA +DV
Sbjct: 123 WRNGNSRWDIIDVVRACYALRPEGIEWPLKDDGSPSFKLEDLSKANNIEHAAAHDAMSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
+AT+ + L++ +PKL++YL++ R K + L DI TPLVH+S A IA
Sbjct: 183 HATIGMAKLVKTAQPKLYDYLFNLRFKKNVIALFDINAHTPLVHISSKLPAINGCCTWIA 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
PVA HP K++ I NL+ D++ DL ++ ++L+T + L +G +PIK +H+NK
Sbjct: 243 PVAQHPTNKNAFIVVNLALDIQPLIDLSVDEIIEKLYTPSNMLEEGEQRLPIKLIHVNKS 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P++ P + + R GI+ + CL NL +L+Q L + A+++ + QD D L
Sbjct: 303 PVIAPAKTLDESNAARLGINREVCLSNLKVLKQHPELVAKLIAVHSTTRDNKEQDADHAL 362
Query: 361 YDG-FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y G FF+ DR +MD++L ++ EQL+ L LPF D RL L F Y+ RNFP +L+E+E Q
Sbjct: 363 YSGAFFSPKDRALMDQVLHSSTEQLADLTLPFEDPRLDNLLFYYKGRNFPTSLNEQELQR 422
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W HRK L + +Y L+ LS +Y+ + K ++ ALY Y + +
Sbjct: 423 WQNHRKFRLLDDTSPSSITMTDYVQTLELLSEQYQSNNDKLAILKALYTYAEQL 476
>gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans]
gi|133737741|emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA
deoxyribophosphodiesterase) (dRPase) [Herminiimonas
arsenicoxydans]
Length = 477
Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats.
Identities = 184/475 (38%), Positives = 278/475 (58%), Gaps = 10/475 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ F+ +DYETFG + DRPAQFA +R D + +I + + +C+PA+D+LPDP++ IT
Sbjct: 3 THTFLWHDYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ L G+ E +F+ +I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 63 GITPQVCLERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWD+LDV+R YA P+GI WP DG +SF+L+ L ANGI H AHDA +DV
Sbjct: 123 WQNACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGIAHEAAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIR+++P+LF++ + K+++ I + P +H++GMF A R ++
Sbjct: 183 RATIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITGMFPAERGCIGIVW 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A HP K+ VI +L+ D LD+ + R+F+ D L +G+ +PIK +HLNK
Sbjct: 243 PLAVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGVSRLPIKSIHLNKS 302
Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
P+++ + E +WG+D L + + ++ ++ ++++P + DVD
Sbjct: 303 PVVINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFHRPQEGTP-DVDED 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + DR+++ + +PE L+ FSD RL ELF+RYRARNFP TLS +E +
Sbjct: 362 LYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRYRARNFPQTLSAEEAER 421
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W EHR L IE ++ LS DE E ++ ALY+Y + + P
Sbjct: 422 WEEHRAARLFNGDGGARTIEGMFAEIDQLSE--TADERGEEILAALYDYAEAIAP 474
>gi|91788799|ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666]
gi|91698024|gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666]
Length = 480
Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats.
Identities = 184/480 (38%), Positives = 279/480 (58%), Gaps = 14/480 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F+ +DYETFG + DRP+QFAG+R D + ++ + +C+PA+DYLPDP + IT
Sbjct: 3 PHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ L G+ E F+ +I Q + P T +GYN IRFDD +R +F+RN D Y
Sbjct: 63 GITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYARE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWDLLDV+R YA P+GI WP+++DG SFKL+DLA ANG+ H AHDA +DV
Sbjct: 123 WQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRSNT 237
AT+AL LIR+ +PKLF++ K+++ + + + TP +HVSGMF R
Sbjct: 183 RATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERGCL 242
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
A++ P+A HP K+ ++ +L+ D LD L +RLFT +L +G++ +P+K VH
Sbjct: 243 AVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKSVH 302
Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
LNK P+++ + E +WG+D L N ++ + ++ +P ++ D
Sbjct: 303 LNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAP-D 361
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
VD LY GF + DR+ ++++ +P +L+ F D RL EL FRYRARNF TL+ +
Sbjct: 362 VDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTPE 421
Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
E + W HR L ++ ++ +LS DE + ++ ALY+Y + + P+
Sbjct: 422 EAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETT--DERGQAILGALYDYAEAIAPE 479
>gi|124266553|ref|YP_001020557.1| exonuclease I [Methylibium petroleiphilum PM1]
gi|124259328|gb|ABM94322.1| Exodeoxyribonuclease I subunit C [Methylibium petroleiphilum PM1]
Length = 479
Score = 656 bits (1694), Expect = 0.0, Method: Composition-based stats.
Identities = 187/479 (39%), Positives = 272/479 (56%), Gaps = 11/479 (2%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+ H F +DYETFGR DRPAQFAGVR D + +I + +C+PA D+LPDPE+
Sbjct: 1 MSEHSFYWHDYETFGRWPRRDRPAQFAGVRTDAELNEIGPPLMHYCQPAPDFLPDPESCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI PQ L G+ E F+ I + + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 61 LTGILPQTCLEQGLPEHAFAAAIERELAAPGTVGVGYNTIRFDDEVTRHLFWRNLMDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W NG RWDLLDV+R YA P+GI+WP +DG SFKL+ L ANG+ H AHDA +
Sbjct: 121 REWQNGCGRWDLLDVVRCTYALRPEGIEWPRHEDGRASFKLEHLTAANGLAHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+ L LIR +P+L+++ + K+ + I P +H+SGM+ A R A
Sbjct: 181 DVRATIGLARLIRRHQPRLWDFCFRLHRKDAVMAEIGAGARRPFLHISGMYPAERGCLAA 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+ HP K+ +I +L+ D LD+ + +RLFT ++L +G +PIK +H+N
Sbjct: 241 VWPLGAHPTNKNELIVWDLAADPSELYGLDAAAIRQRLFTKAEDLPEGTTRLPIKSIHIN 300
Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSSSQDV 356
K PI++ + ERWG D R + + L R + ++ +P + DV
Sbjct: 301 KSPIVIGNLKTLSPAMAERWGYDAARVQRHADIALAHDALPRALWADVFARPAPEQAPDV 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF ++ DR+ ++R+ PE L+ F D RL EL FRYRARNFP TL +E
Sbjct: 361 DEDLYGGFVSNADRRTLERLRGLPPEGLAGQRPSFEDGRLEELLFRYRARNFPDTLDAEE 420
Query: 417 KQDWLEHRKKMLT-----RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
+ W +HR + L S + + ++ +LS DE + ++ ALY+Y + + P
Sbjct: 421 RAQWEQHRAERLHLGVGGGSSLAAFFERIDALSE--SADERGQDILGALYDYAEQIAPS 477
>gi|120555513|ref|YP_959864.1| exonuclease I [Marinobacter aquaeolei VT8]
gi|120325362|gb|ABM19677.1| Exodeoxyribonuclease I subunit C [Marinobacter aquaeolei VT8]
Length = 482
Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats.
Identities = 200/480 (41%), Positives = 290/480 (60%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL DG EAEF +I+ FS P TC +GYN++RFDD +R+ YRN D Y
Sbjct: 61 TGITPQKALEDGFPEAEFIAQINAAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI WP ++DG+ SF+L++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLF+++ + ++K+ R+++D +M P+ H+S + A+R AL+
Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTASMKPVFHISAKYPAARGCCALV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A K+ VI +L D + ++ +R+FTS EL +G+ P+K V LNK
Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300
Query: 300 CPILMP---IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355
CP+L P + +E +D NL LR+ +L R + + + S D
Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARVAQAFEQDFQGSDLTD 360
Query: 356 VDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D QLY GF + DR+ ++ +L + L+ + F D RLPE+ FRYRARN+P TL
Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVDTLAEQEMSFEDPRLPEMLFRYRARNYPDTLIG 420
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W + R + L + + +E Y +LQ L+ + + K+ ++ L+ Y + +IP
Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGQELQRLAADTELTPRKQQILEDLHLYGESLIP 480
>gi|94500901|ref|ZP_01307427.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
gi|94427020|gb|EAT12002.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
Length = 478
Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats.
Identities = 198/475 (41%), Positives = 292/475 (61%), Gaps = 8/475 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T YD+ETFG DRPAQFAGVR D I ++F+C+ ADDYLP P A IT
Sbjct: 4 TESIYWYDFETFGASPIWDRPAQFAGVRTDLDLNIIAEPDMFYCRQADDYLPHPIACMIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+PQ G+ EAEF +RIH F P TC+ GYN+IRFDD +RN YRNF+D Y+
Sbjct: 64 GISPQTCQDKGLPEAEFIKRIHDLFMQPQTCVAGYNSIRFDDEVTRNTLYRNFFDPYQRE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+LD+MR Y+ PDGI+WP +DG SFKL++L+ ANGI H NAHDA +DV
Sbjct: 124 WQNGNSRWDILDMMRCAYSLRPDGIEWPKGEDGKVSFKLENLSAANGIIHENAHDALSDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ L L++EK+PKL++YL++ R K + L+D+ N P++H+SGMF + A++
Sbjct: 184 YATIGLAKLVKEKQPKLYQYLFELRRKEAVAPLLDVVNKRPVLHISGMFPVEKGCAAVMV 243
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNK 299
P+A P+ K+++I +L D +L + Q+ RL+T EL+ G+ +P+K +H+NK
Sbjct: 244 PLAMEPKNKNAIICFDLMSDPTPLFELTAEQIQARLYTPKAELEAQGIERLPLKSIHINK 303
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CP+++P + E ++WG+ + NL ++ +L ++ + + ++ + + S D D+
Sbjct: 304 CPVVLPAKMVQPEIAKKWGLSGDQIRSNLAKIKNGPDLTEKLQNVMSRDFEAHS-DPDAM 362
Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
+Y GFF D+Q M+ I ++ PE L LN+ F DRRL E+ FRYRARN+P TL+ E +
Sbjct: 363 IYSGGFFGPTDKQAMETIRQSHPEALDDLNISFQDRRLEEMLFRYRARNYPETLTGDEFE 422
Query: 419 DWLEHRKKML---TRSRIEEYKNKLQSLSGEYKGDEGKE-GLINALYEYLQWVIP 469
W RK+ L T Y+ ++L + + L+ L Y + + P
Sbjct: 423 QWETFRKQRLLGPTNGSYLNYELFAKALQEAAQTAPESQYPLLQDLQMYAESIYP 477
>gi|332531005|ref|ZP_08406927.1| exonuclease I [Hylemonella gracilis ATCC 19624]
gi|332039566|gb|EGI75970.1| exonuclease I [Hylemonella gracilis ATCC 19624]
Length = 488
Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats.
Identities = 195/487 (40%), Positives = 278/487 (57%), Gaps = 17/487 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG + DRP+QFAG+R D +I + +C+PADDYLPDP A +
Sbjct: 1 MALTFFWHDYETFGVNPRRDRPSQFAGIRTDADLNEIGEPVMLYCRPADDYLPDPGACLL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ L GV E EF+ RI + P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQTCLEHGVPEHEFAARIEHELAQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD----GATSFKLQDLALANGIEHVNAHD 176
W N SRWDLLDV+R A P+GI+WP + G SFKL+ L ANG+ H AHD
Sbjct: 121 EWQNECSRWDLLDVVRLCRALRPEGIEWPMHREGEMKGKPSFKLEHLTAANGLSHEAAHD 180
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGA 232
A +DV AT+AL LIR+K+P+LF++ R K+ + + + P +HVSGMF A
Sbjct: 181 ALSDVRATIALARLIRDKQPRLFDFALALRKKDAVAAELGLPTSQAQARPFLHVSGMFPA 240
Query: 233 SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVP 291
R +L+ P+A HP K+ +I +LS D L + RL+T D+L +G+ +P
Sbjct: 241 ERGCLSLMWPLATHPTNKNELIAWDLSADPAELAHLTVDDIRLRLYTRTDDLPEGVSRLP 300
Query: 292 IKEVHLNKCPILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT 350
IK VHLNK P+++ + + E +RWG+D L N + R+ ++ + ++ +P
Sbjct: 301 IKSVHLNKSPMVVSNLKTLRPELAQRWGLDLDAALRNAAVARELPDMSALWPQVFQRPAQ 360
Query: 351 SSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
+ + DVD LY GF + DR+ + R+ P++L+T F D RL ++ FRYRARNFP
Sbjct: 361 AGTPDVDEDLYGGFVGNEDRRRLARLRALPPQELATSRAGFDDARLGDILFRYRARNFPD 420
Query: 411 TLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEY 463
TL+E E+ WL HR L ++ +L L + +GDE E ++ ALY Y
Sbjct: 421 TLNEDEQARWLAHRVARLVEGADGARNLDALFAELDRLGQDATEQGDERGEAILEALYAY 480
Query: 464 LQWVIPK 470
+ + P+
Sbjct: 481 AEQIAPE 487
>gi|299529972|ref|ZP_07043399.1| exonuclease I [Comamonas testosteroni S44]
gi|298721952|gb|EFI62882.1| exonuclease I [Comamonas testosteroni S44]
Length = 479
Score = 653 bits (1686), Expect = 0.0, Method: Composition-based stats.
Identities = 190/481 (39%), Positives = 287/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +GV E EF+ I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA P+GIQWP+++DG SF+L+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+AL LIREK+P+LF++ + K+ + + + ++ P +HV+GM +R
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
++ P+A HP K+ VI +L+ D + +L RLFT EL +G+ +PIK +
Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVSRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + E+WG+D + +++ + R ++ ++K+++ +
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKSVFTRE-AGEPL 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E+Q W +HR L E+ + + +LS DE E ++ LY+Y ++P
Sbjct: 420 DEQQRWEQHRAACLIEGQGGARTAEQMFSMIDALSE--SVDERGEEILGDLYDYGSNLVP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|221066347|ref|ZP_03542452.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
gi|220711370|gb|EED66738.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
Length = 479
Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats.
Identities = 195/481 (40%), Positives = 286/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL++GV E EF+ I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQRALQEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLTDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA PDGIQWP+++DG SFKL+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPDGIQWPTKEDGTPSFKLEDLARANGLLHEQAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+AL LIREK+P+LF++ + K+ + + + ++ P +HV+GM +R
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
A++ P+A HP K+ VI +L+ D + L RLFT EL +G+ +PIK +
Sbjct: 241 LAVMWPLATHPTNKNEVICWDLAADPTELSGISIEDLRLRLFTRQAELPEGVSRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + E+WG+D + + + + R ++ ++KA++ +
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMRHAAMARDLPDMSAQWKAVFTRE-AGEPL 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E+Q W +HR L E+ + SLS DE E ++ LY+Y ++P
Sbjct: 420 GEQQRWEQHRAACLIEGQGGARTAEQMFAMIDSLSE--AADERAEEILGELYDYADAMVP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|160898944|ref|YP_001564526.1| exonuclease I [Delftia acidovorans SPH-1]
gi|160364528|gb|ABX36141.1| Exodeoxyribonuclease I [Delftia acidovorans SPH-1]
Length = 479
Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats.
Identities = 184/481 (38%), Positives = 281/481 (58%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D + +I +++C+PA DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ L G+ EA+F+ RI + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQQCLEQGMPEAQFAARIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA P+GI WP ++DG+ SFKL+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLLHEKAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN----MTPLVHVSGMFGASRSN 236
V AT+ L LIR+ +P+LF++ + K+++ + + + P +HVSGM R
Sbjct: 181 VRATIGLARLIRKVQPRLFDFAFSLHKKDRVLQEMGLPAEPAHARPFLHVSGMIRPERGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
A++ P+A HP K+ +I +L+ D +D L RLF+ +L +G+ +PIK +
Sbjct: 241 IAVMWPLATHPTNKNEIICWDLAQDPSELASIDVDTLRLRLFSRAADLPEGMQRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + +WGID ++C+ + + R ++ ++A++ +P
Sbjct: 301 HVNKSPMVVGSLKTLSAAMAAQWGIDVEQCMGHAAIARDLPDMSALWRAVHQRPAQEG-L 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++ + + ++L+ F D RL EL FRYRARNFP +L+
Sbjct: 360 DADQDLYGGFVGNEDRRRLNHLRSLSAQELALDRTGFDDARLTELLFRYRARNFPASLNP 419
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E+Q WL+H L E+ + LS DE E ++ ALY+Y + ++P
Sbjct: 420 AERQRWLQHCAACLIEGKGGARTAEQMFAMVDQLSE--TADERGEEILGALYDYAEAIMP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|119946086|ref|YP_943766.1| exodeoxyribonuclease I [Psychromonas ingrahamii 37]
gi|119864690|gb|ABM04167.1| Exodeoxyribonuclease I subunit C [Psychromonas ingrahamii 37]
Length = 486
Score = 651 bits (1681), Expect = 0.0, Method: Composition-based stats.
Identities = 188/468 (40%), Positives = 280/468 (59%), Gaps = 4/468 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+DYETFG + DRPAQFAG+R D I + ++C+P +DYLP+PEA ITG
Sbjct: 17 PTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLITG 76
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+AL+ G+VE+EF I+Q FS NTC++GYNNIRFDD +R YRNF D Y+ W
Sbjct: 77 ITPQRALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQREW 136
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NG SRWD++D++RA YA P+GI WP ++ A SF+L+ L NG+ H AHDA +DVY
Sbjct: 137 KNGCSRWDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKENGLAHQQAHDAMSDVY 196
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ LI+E PKL++Y + R KN + + + + TP+VHVSGMF A + + + P
Sbjct: 197 ATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHVSGMFPALQGCASYVMP 256
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+ HP K++VI +L+ D+ L Q+ L+T +L +G+ IK +H+NKCP
Sbjct: 257 ITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKCP 316
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS-SSQDVDSQL 360
I+ P +E ++ GID K+C +L L Q L ++ + ++ + S ++ V+ L
Sbjct: 317 IIAPAKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFIQETPSTENKSVEEML 376
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GF + D+ + + + + L F D RL L + YRARN P +L E++
Sbjct: 377 YSGGFLSAADKALSEEVCNSTWPALGNKEFNFEDDRLGILLWHYRARNAPDSLDVAEQEK 436
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W HR+ L + E Y KL++L+ E + + K L+ LY+YL ++
Sbjct: 437 WARHRQNYLLENS-EAYIEKLEALALENQSNPEKIELLKQLYDYLNYL 483
>gi|71737440|ref|YP_276156.1| exonuclease I [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71557993|gb|AAZ37204.1| exodeoxyribonuclease I [Pseudomonas syringae pv. phaseolicola
1448A]
Length = 476
Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats.
Identities = 193/475 (40%), Positives = 283/475 (59%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLSEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L+ + ++++ L S + ++ +Y Q +
Sbjct: 418 RWQDFCQQRLSDPERGAPNTLKDFATALAECSL--SAAPEQLEVLRQWQDYAQAL 470
>gi|289628502|ref|ZP_06461456.1| exonuclease I [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289648244|ref|ZP_06479587.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 2250]
gi|320325491|gb|EFW81553.1| exonuclease I [Pseudomonas syringae pv. glycinea str. B076]
gi|320327221|gb|EFW83235.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|330868768|gb|EGH03477.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330880763|gb|EGH14912.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|330987779|gb|EGH85882.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 476
Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats.
Identities = 193/475 (40%), Positives = 283/475 (59%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L+ + ++++ L S + ++ +Y Q +
Sbjct: 418 RWQDFCQQRLSDPERGAPNTLKDFATALAECSL--SAAPEQLEVLRQWQDYAQAL 470
>gi|302608296|emb|CBW44754.1| Exodeoxyribonuclease I, Exonuclease I, DNA
deoxyribophosphodiesterase, dRPase [Marinobacter
hydrocarbonoclasticus]
Length = 482
Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats.
Identities = 201/480 (41%), Positives = 290/480 (60%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE V +CKPADDYLP PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL DG EAEF +I++ FS P TC +GYN++RFDD +R+ YRN D Y
Sbjct: 61 TGITPQKALEDGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI WP ++DG+ SF+L++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIHWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLF+++ + ++K+ R+++D M P+ H+S + A+R AL+
Sbjct: 181 VLATIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTAAMKPVFHISAKYPATRGCCALV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A K+ VI +L D + ++ +R+FTS EL +G+ P+K V LNK
Sbjct: 241 APLAESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNK 300
Query: 300 CPILMP---IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-QD 355
CP+L P + +E +D NL LR+ +L R + + + S D
Sbjct: 301 CPVLAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARIAQAFEQDFQGSDLTD 360
Query: 356 VDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D QLY GF + DR+ ++ +L E L+ + F D RLPE+ FRYRARN+P TL
Sbjct: 361 PDEQLYAGGFISKTDREKLNWLLTQPVETLAEQEVRFEDARLPEMLFRYRARNYPDTLIG 420
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E + W + R + L + + +E Y +LQ L+ + + K+ ++ L+ Y + +IP
Sbjct: 421 EEMERWEQFRTERLMQPKKGWRSLEAYGRELQRLASDPELTPKKQQVLEDLHLYGESLIP 480
>gi|83746387|ref|ZP_00943439.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
gi|207744660|ref|YP_002261052.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
gi|83726928|gb|EAP74054.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
gi|206596067|emb|CAQ62994.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
Length = 489
Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats.
Identities = 188/478 (39%), Positives = 283/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 193 VRATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINK 311
Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + ++R+ ++ +Y + +DVD
Sbjct: 312 APIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYVRELD-PIEDVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF A+ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEDEYE 430
Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
W + R + L E + +LQ L E GD + ++ LY+Y Q ++P
Sbjct: 431 QWEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLYDYAQQIVP 488
>gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 472
Score = 649 bits (1676), Expect = 0.0, Method: Composition-based stats.
Identities = 323/468 (69%), Positives = 386/468 (82%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+HFVIYDYETFG DVA DRPAQFAG+R+D Q E I+S EVFFCKP+DDYL DPE+V ITG
Sbjct: 2 DHFVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLITG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKALRDGVVE EF++R++QFF PNTCI GYNNIRFDD YS+NIFYRNFYD Y WS+
Sbjct: 62 ITPQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWSY 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDL++VMRAIYAFSPDGIQWP RDDG SFKLQDLALANGIE+VNAHDA+ DV
Sbjct: 122 KNGNSRWDLINVMRAIYAFSPDGIQWPHRDDGFPSFKLQDLALANGIEYVNAHDAEQDVD 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
ATLAL L+R +KPKLF YLY+ RNK L+ LIDI+N+TPLVHVS FGA+++NTALIAP
Sbjct: 182 ATLALARLVRREKPKLFNYLYNSRNKMHLKSLIDIRNLTPLVHVSSKFGAAQANTALIAP 241
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHPR + +I CNLSGDM+V QDLDS++L KRLFT HD+L GL PVP+K VH+N+CP+
Sbjct: 242 IAWHPRNANEIIACNLSGDMQVLQDLDSIELGKRLFTRHDQLNGLSPVPLKSVHINRCPV 301
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
L PI + FER GID KRC++NL LLRQQ +L+++ AIY+KP+ S S+DVDS+LYD
Sbjct: 302 LFPIGSFHSKKFERLGIDDKRCVDNLKLLRQQVDLQEKVIAIYDKPFVSLSEDVDSRLYD 361
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GF +D D ++ D I T PE+LSTLN F+D+RLPEL FRYRARNFPHTL KEKQ WLE
Sbjct: 362 GFLSDEDCKMRDCIPLTEPEKLSTLNFQFTDQRLPELLFRYRARNFPHTLDSKEKQAWLE 421
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
HRK + TRSRIEEY+NKL +L YK +E +E L+ L++YLQ ++PK
Sbjct: 422 HRKAIFTRSRIEEYENKLHTLLNAYKSNEREERLVQLLFDYLQLIVPK 469
>gi|307825107|ref|ZP_07655328.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
gi|307733855|gb|EFO04711.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
Length = 501
Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats.
Identities = 193/472 (40%), Positives = 284/472 (60%), Gaps = 12/472 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F +DYETFG D D+P QFAG+R D + ++ V +CKPA+D LP PEA IT
Sbjct: 4 TQTFYWHDYETFGTDPQRDKPVQFAGIRTDFDFNVVDDPLVVYCKPAEDCLPHPEACLIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A + GV EAEF R IH+ + PNTC +GYN++RFDD +RN YRNFYD Y
Sbjct: 64 GITPQLAEQKGVCEAEFIRLIHEQLAQPNTCTLGYNSLRFDDEVTRNCLYRNFYDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDL+DV+RA A PDGI WP ++G SF+L L N I H AHDA +DV
Sbjct: 124 WQNGNSRWDLIDVVRATRALRPDGIVWPVNEEGGPSFRLDQLTRVNNIAHEAAHDALSDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YATLA+ L+++ +PKL+++L +R K + L+ + + P+VHVSG + A ++ A++
Sbjct: 184 YATLAITKLVKQAQPKLYQFLLRHRVKGEALNLLQLGSFKPVVHVSGKYPAVKNCLAVVL 243
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+ HP + +I +LS D L ++ +R+FT+ +L +G+ +P+K VH+NKC
Sbjct: 244 PICKHPTNANGIIVYDLSVDPEPMLGLAVEEIQQRIFTATADLPEGVARIPLKTVHINKC 303
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN-KPYTSSSQDVDSQ 359
P+L P+ + E +R ID C N+ ++ L + A+++ + Y D D +
Sbjct: 304 PVLAPVSVIRPEDAQRLEIDLALCHANIDKIKAAVGLSENLAAVFSGQAYVVQDSDPDLE 363
Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
+Y GFF++ D++ M +I PEQL+ F+D RL E+ FRYRARN+P TL+ E +
Sbjct: 364 IYSGGFFSENDKKQMIKIRSMQPEQLTKSVFKFTDSRLSEMLFRYRARNYPETLNTDELR 423
Query: 419 DWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
W E LT + +++Y ++L LS + + +I+AL +Y
Sbjct: 424 RWNEFCVNRLTGRQAGGGIVLDDYFSRLAELSRDENKNTK---IIDALEDYA 472
>gi|241763393|ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
gi|241367435|gb|EER61746.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
Length = 481
Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats.
Identities = 186/483 (38%), Positives = 282/483 (58%), Gaps = 14/483 (2%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+ H F+ +DYETFG + DRPAQFA +R D + ++ + +C+PA+DYLPDP++
Sbjct: 1 MSPHTFLWHDYETFGANTRRDRPAQFAAIRTDAELREVGEPLMLYCQPANDYLPDPQSCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ L GV E EF+ RI F+ P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 ITGITPQLCLEKGVPEHEFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLDV+R YA PDGI WP ++DG+ SFKL+ L+ ANG+ H AHDA +
Sbjct: 121 REWQNQCGRWDLLDVVRMTYALRPDGIHWPRKEDGSPSFKLEHLSKANGLAHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN----MTPLVHVSGMFGASRS 235
DV AT+AL LIR+ P+LF++ K+++ + + P +HVSGMF A R
Sbjct: 181 DVRATIALARLIRQHNPRLFDFALSLHKKDRVAAELRLPATALTARPFLHVSGMFPAERG 240
Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKE 294
A++ P+A HP K+ VI +L+ D R L + ++ R+F+ +L +G+ +P+K
Sbjct: 241 CLAVMWPLASHPTNKNEVIAWDLAHDPRELATLGTDEIRLRMFSRAADLPEGMTRLPVKT 300
Query: 295 VHLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS 353
+HLNK P+++ ++ +RWGID + ++ + R ++ + A++ +P +
Sbjct: 301 IHLNKSPMVVGNVNTLTPALAQRWGIDLVQAAQHAEVARSLPDMSGIWPAVFARP-AEPA 359
Query: 354 QDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
DVD LY GF + DR+ ++ + ++L+ F D RL EL +RYRARNFP TLS
Sbjct: 360 ADVDQDLYGGFVGNSDRRRLNDLRAMDGQKLAAARTGFDDPRLEELVWRYRARNFPTTLS 419
Query: 414 EKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+E + W HR L ++ ++ +S E DE + ++ ALY+Y + +
Sbjct: 420 PEEGERWEAHRAACLFDGQGGARTVDRLFTEIDQIS-ETADDERTQEILGALYDYAEHIA 478
Query: 469 PKE 471
P+
Sbjct: 479 PER 481
>gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1]
gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1]
Length = 484
Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats.
Identities = 187/476 (39%), Positives = 272/476 (57%), Gaps = 8/476 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F +D+ET G D A DRP QFAG+R D + I +F+C+ A+D LP PEA +T
Sbjct: 6 PTSFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+PQ A R+G+ EAEF + + S P TC +GYN IRFDD R FYRNF D Y
Sbjct: 66 GISPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPYTRE 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N SRWD++D++R YA P+GI WP +DG S KL+ L ANGI H AHDA +DV
Sbjct: 126 WQNNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
Y T+ + LIR K+PKLF Y + R K++L++ ID+ + P +H+SGMFG +++ A +
Sbjct: 186 YGTIEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNYAAFVV 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+A HP K+ VI +L D + DL ++ R+FT +EL L +P+K +H NK P
Sbjct: 246 PIAPHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIHYNKSP 305
Query: 302 ILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
+ P + K +R +D C NL +++ L + ++ + +D D L
Sbjct: 306 AVAPATFLKDVDVVKRLALDGSVCRHNLAIIKGHAGLAAKLSDVFMQEDRPIHKDPDVML 365
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF+ DR M++I T QLS L + F DRRLPE+ RY RN+P LSE+++ +
Sbjct: 366 YSGGFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQLSEQQQFE 425
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W E+R+ L +E+Y +L ++ ++ ++ L +Y Q + P
Sbjct: 426 WEEYRQVRLLEKDGGGSINMEQYFERLNLIAQTPDLSPAEQVMLQDLADYAQSIYP 481
>gi|161621731|ref|NP_521246.2| exonuclease I [Ralstonia solanacearum GMI1000]
Length = 477
Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats.
Identities = 186/478 (38%), Positives = 284/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 1 MTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 61 TGITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG++H AHDA +D
Sbjct: 121 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 181 VRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAS-RPLLHVSGMYGVERGCLAVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT +L +G +PIK +H+NK
Sbjct: 240 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINK 299
Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWGID + + + +LR+ ++ +Y + +DVD
Sbjct: 300 SPIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYAREL-EPIEDVDQ 358
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 359 NLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEYE 418
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
W + R + L R + + +++ L + D + ++ LY+Y Q ++P
Sbjct: 419 QWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 476
>gi|149376775|ref|ZP_01894532.1| Exonuclease I [Marinobacter algicola DG893]
gi|149358896|gb|EDM47363.1| Exonuclease I [Marinobacter algicola DG893]
Length = 481
Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats.
Identities = 203/479 (42%), Positives = 289/479 (60%), Gaps = 10/479 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYETFG D DRP+QFAGVR D IE + +C PADDY+P PEA I
Sbjct: 1 MIRSFYWHDYETFGVDPIHDRPSQFAGVRTDADLNIIEDPLIIYCAPADDYVPSPEACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQKAL +G EAEF +I++ FS P TC +GYN++RFDD SR+ YRN D Y
Sbjct: 61 TGITPQKALEEGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVSRHTLYRNLRDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GIQWP ++DG+ SF+L++L +ANGI H AHDA +D
Sbjct: 121 EWQNGNSRWDIIDMVRLTYALRPEGIQWPKKEDGSPSFRLEELTVANGIAHEAAHDAMSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKLFE++ ++K+ R ++D +M P+ H+S + A+R A++
Sbjct: 181 VEATIAVAKLIKEKQPKLFEFVLQNKDKHSARAMLDTASMKPVFHISAKYPATRGCCAMV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A HP K+ VI +L D Q+ +R+FTS EL +G P+K V LNK
Sbjct: 241 APLADHPTNKNLVIVYDLREDPSELIHATPEQIRERVFTSQAELGEGTSRFPLKGVQLNK 300
Query: 300 CPILMP---IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
CP+L P + E +D R E+LT+LR+ +L R +++P+ D
Sbjct: 301 CPVLAPATMLKSLSGERLAELELDGDRLREHLTMLRKAPDLPARIAEAFDQPHEGDLTDP 360
Query: 357 DSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D QLY GF DR+ ++ +L+ E L + F D RL E+ FRYRARN+P TL +
Sbjct: 361 DEQLYAGGFIGKTDREKLNWLLQQPVETLGEQEVQFEDGRLQEMLFRYRARNYPSTLIGE 420
Query: 416 EKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E + W E R + L + +E + +LQ L+ + + K ++ L+ Y + +IP
Sbjct: 421 EMERWEEFRSQRLMSPKKGWRSLEAFGRELQRLAADPELTPEKRHVLEELHLYGESLIP 479
>gi|307546461|ref|YP_003898940.1| exonuclease I [Halomonas elongata DSM 2581]
gi|307218485|emb|CBV43755.1| exonuclease I [Halomonas elongata DSM 2581]
Length = 506
Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats.
Identities = 200/485 (41%), Positives = 283/485 (58%), Gaps = 18/485 (3%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ +DYETFG D DRP+QFA +R D + +I FCKPADDYLP P+A ITGI
Sbjct: 20 TFLWHDYETFGADPRRDRPSQFAAIRTDADFNEIGEPIELFCKPADDYLPHPQACLITGI 79
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+A R G+ EAEF+ R+ S P TC +GYNN+RFDD R++FYRN D Y W
Sbjct: 80 TPQQAKRRGLPEAEFAGRVQAAMSEPGTCALGYNNLRFDDEVGRHLFYRNLIDPYAREWQ 139
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDL+DV+RA +A PDGI WP+RDDG SFKL+DL ANGIEH AHDA ADV A
Sbjct: 140 NGNSRWDLIDVVRAFHALRPDGITWPTRDDGTPSFKLEDLTAANGIEHAGAHDALADVRA 199
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ L L+R LF+YL R K + + ID+ + P++H+S + ASR +AL+ P+
Sbjct: 200 TIELARLLRRSNANLFDYLLGMRGKRAVGRAIDVASRKPVLHISRRYPASRGCSALVMPL 259
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A HP + VI +L+ D LD+ Q+ R+F S+D+L +G +P+K +H+NKCP+
Sbjct: 260 AEHPTNPNGVIVYDLAVDPEPLLSLDAQQIRDRVFVSNDDLAEGESRIPLKVIHINKCPV 319
Query: 303 LMPIDYCKK----------EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS 352
+MP + K E ER G+D C + L ++ R ++ P S
Sbjct: 320 IMPANALKDASGPHRGEYGEIVERLGVDVASCRRHWKALAASPDVSARVAEVFAGPPPES 379
Query: 353 SQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
D D LY GFF+ DRQ M R+ + P L F D RL E+ FRYRAR++P T
Sbjct: 380 PHDPDLMLYSGGFFSPSDRQQMQRVRDSDPWDLVGARFAFQDPRLEEMLFRYRARSYPDT 439
Query: 412 LSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
L+ +E+ W R + + + E+ +++ L+ D ++ ++ L +++
Sbjct: 440 LTGEEQARWEAFRWERMNDPAVAGFTLTEFAREIERLNQVSLADRERQ-ILEELVMHVEA 498
Query: 467 VIPKE 471
++P +
Sbjct: 499 IMPAQ 503
>gi|207721998|ref|YP_002252436.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
gi|206587171|emb|CAQ17755.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
Length = 489
Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats.
Identities = 186/478 (38%), Positives = 282/478 (58%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 193 VRATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-EAPRPLLHVSGMYGVERGCMAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINK 311
Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + ++R+ ++ +Y + +DVD
Sbjct: 312 APIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYARELD-PIEDVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF A+ DR+ ++ + + EQL+ L+ F+D RL EL FRYRARNFP TL+E E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLSELLFRYRARNFPDTLTEDEYE 430
Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
W + R + L E + +LQ L E GD + ++ L++Y Q ++P
Sbjct: 431 QWEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDTRAQNILQDLFDYAQQIVP 488
>gi|300702669|ref|YP_003744269.1| exodeoxyribonuclease i [Ralstonia solanacearum CFBP2957]
gi|299070330|emb|CBJ41622.1| exodeoxyribonuclease I [Ralstonia solanacearum CFBP2957]
Length = 489
Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats.
Identities = 187/478 (39%), Positives = 283/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 193 VRATIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT EL +G +P+K +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINK 311
Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + ++R+ ++ +Y + +DVD
Sbjct: 312 APIVIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVYARELD-PIEDVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF A+ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLAEDEYE 430
Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSLSGE--YKGDEGKEGLINALYEYLQWVIP 469
W + R + L E + +LQ L E GD + ++ L++Y Q ++P
Sbjct: 431 QWEQLRAERLFEGGGGYLTFEAFGERLQQLGAEAAESGDARAQNILQDLFDYAQQIVP 488
>gi|17430149|emb|CAD16834.1| putative exodeoxyribonucleaseIprotein [Ralstonia solanacearum
GMI1000]
Length = 489
Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats.
Identities = 185/478 (38%), Positives = 284/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F +DYETFG DRPAQFAG+R D + +I FC+P++D+LPDP + I
Sbjct: 13 VTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + + P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDG++WP DG SFKL+ L+ ANG++H AHDA +D
Sbjct: 133 EWQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R +P+LF++ + R K ++ I + PL+HVSGM+G R A++
Sbjct: 193 VRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAS-RPLLHVSGMYGVERGCLAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + +RLFT +L +G +PIK +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINK 311
Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWGID + + + +LR+ ++ +Y + +DVD
Sbjct: 312 SPIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYAREL-EPIEDVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF + DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 371 NLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEEYE 430
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
W + R + L R + + +++ L + D + ++ LY+Y Q ++P
Sbjct: 431 QWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488
>gi|121604837|ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ2]
gi|120593806|gb|ABM37245.1| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans
CJ2]
Length = 482
Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats.
Identities = 185/480 (38%), Positives = 278/480 (57%), Gaps = 14/480 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
++ F+ +DYETFG + DRPAQFAG+R D + +I + +C+PA+DYLPDPE+ +T
Sbjct: 3 SHTFLWHDYETFGLNTRRDRPAQFAGIRTDAELNEIGEPLMIYCQPANDYLPDPESCVLT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ L+ GV E F+ RI Q + P T +GYN IRFDD +R++F+RN D Y
Sbjct: 63 GITPQHCLQHGVPEHAFAARIEQVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYGRE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWDLLDV+R YA PDGI WP ++DG SFKL+DLA ANG+ H AHDA +DV
Sbjct: 123 WQNECGRWDLLDVVRMAYALRPDGIVWPLKEDGKPSFKLEDLARANGLLHETAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN----MTPLVHVSGMFGASRSNT 237
AT+AL L+R +P+LF++ K ++ + + P +HVSGMF A R
Sbjct: 183 RATIALARLVRTAQPRLFDFCLGLHKKARVSAELGLPATARMARPFLHVSGMFPAERGCL 242
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVH 296
A++ P+A HP K+ V+ +L+ D LD L RLF+ +L +G+ +PIK VH
Sbjct: 243 AVMFPLATHPANKNEVLAWDLAHDPSELPLLDVATLRLRLFSKSADLPEGVQRLPIKSVH 302
Query: 297 LNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
LNK P+++ + RWG+D ++ L + + ++ + ++ + + D
Sbjct: 303 LNKSPMVVRNLQTLTPAMAARWGVDTEQALRHAEIAAGLPDMSAVWPEVFRRAAEAEP-D 361
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
VD LY GF + DR+ ++++ + +L+ + F D RL EL FRYRARNFP TL+ +
Sbjct: 362 VDENLYGGFIGNDDRRRLNQLREMSGAELAHSRMGFDDGRLKELVFRYRARNFPETLNPE 421
Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
+ + W HR L ++ + +L+ DE E ++ ALY+Y + ++P+
Sbjct: 422 DTERWEAHRAARLLDGEGGARNVDALFAGIDALAQ--TADERGEAILGALYDYAEAIVPE 479
>gi|264679055|ref|YP_003278962.1| exonuclease-like protein [Comamonas testosteroni CNB-2]
gi|262209568|gb|ACY33666.1| Exonuclease-like protein [Comamonas testosteroni CNB-2]
Length = 479
Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats.
Identities = 190/481 (39%), Positives = 284/481 (59%), Gaps = 14/481 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F +DYETFG DRPAQFAG+R D Q +I +++C+PA+DYLPDP++ I
Sbjct: 1 MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +GV E EF+ I + T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 TGITPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NG RWDLLDV+R +YA P+GIQWP+++DG SF+L+DLA ANG+ H AHDA +D
Sbjct: 121 EWQNGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+AL LIREK+P+LF++ + K+ + + + ++ P +HV+GM +R
Sbjct: 181 VRATIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGC 240
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
++ P+A HP K+ VI +L+ D + +L RLFT EL +G+ +PIK +
Sbjct: 241 LGVMWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVTRLPIKSI 300
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
H+NK P+++ + E+WG+D + +++ + R ++ ++KA++ +
Sbjct: 301 HVNKSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKAVFTRE-AGEPL 359
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D LY GF + DR+ ++RI R +P++L+ F D RL EL +RYRARNFP TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELAWRYRARNFPQTLDA 419
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
E W +HR L E+ + +LS DE E ++ LY+Y ++P
Sbjct: 420 GELLRWEQHRAACLIEGQGGARTAEQMFTMIDALSE--SVDERGEEILGDLYDYGSNLVP 477
Query: 470 K 470
+
Sbjct: 478 E 478
>gi|269962181|ref|ZP_06176534.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
gi|269833012|gb|EEZ87118.1| exodeoxyribonuclease I [Vibrio harveyi 1DA3]
Length = 427
Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats.
Identities = 210/427 (49%), Positives = 291/427 (68%), Gaps = 2/427 (0%)
Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
+C+P DYLP PEA ITGITPQKA+++G+ E EF +IH S PNT +GYN+IRFD
Sbjct: 1 MYCRPPADYLPSPEAALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFD 60
Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
D +R YRNF D Y WSW NGNSRWDLLDVMRA +A P+G++WP D+G TSFKL+
Sbjct: 61 DEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEH 120
Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
L++ANGIEH NAHDA ADV AT+ + ++ +PKLF+Y Y RNK +L +L+DI NMTP
Sbjct: 121 LSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTP 180
Query: 223 LVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD 282
L+HVSGM G T+ I PVAWHP ++VI +L+ D + +L + +L +RL+T +
Sbjct: 181 LMHVSGMMGRECQYTSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRE 240
Query: 283 ELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342
EL L+PVP+K VHLNKCPIL P E+ E GID ++CL NL LLRQ +R++
Sbjct: 241 ELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEVIGIDRQKCLSNLALLRQHPEIREKLI 300
Query: 343 AIYN-KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFF 401
++++ + S DVD+QLYDGFF+ DR MD I T P L+ L++ F D+R+ L F
Sbjct: 301 SLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLF 360
Query: 402 RYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
RYRAR++ TL E+E++ W +H +++ S+IEEY L++L E++ DE K ++ ++Y
Sbjct: 361 RYRARHYAGTLDEQEQRRWAQHCREVF-ESQIEEYMLNLENLVHEHESDEKKIAILKSVY 419
Query: 462 EYLQWVI 468
Y++ +
Sbjct: 420 RYVESLA 426
>gi|300690052|ref|YP_003751047.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
gi|299077112|emb|CBJ49735.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
Length = 489
Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats.
Identities = 186/478 (38%), Positives = 285/478 (59%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ F+ +DYETFG DRPAQFAG+R D + +I FC+P+ D+LPDP + I
Sbjct: 13 VTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLI 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ R G+ E F++ I + ++P T +GYN+IRFDD +R++F+RN D Y
Sbjct: 73 TGITPQQCRRQGIPENRFAQAIERELAMPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R +A PDGI+WP DG SFKL+ L+ ANG+ H AHDA +D
Sbjct: 133 EWQNECGRWDLLDVVRTTWALRPDGIEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSD 192
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR +P+LF++ + R K ++ I PL+HVSGM+G R A++
Sbjct: 193 VRATIALARLIRNAQPRLFDFCFALRKKERVLAEIG-DAPRPLLHVSGMYGVERGCLAVV 251
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHP K+ ++ +L+ D DL + + +RLFT EL +G +P+K +H+NK
Sbjct: 252 WPLGWHPTNKNELLVWDLACDPAELFDLGAEAIRERLFTRSAELAEGTARLPVKSIHINK 311
Query: 300 CPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
PI++ + + ERWG+D + + + ++R+ ++ +Y + DVD
Sbjct: 312 APIVIGNLKTLQPAQAERWGVDFATIERHAAVAQGAPDMRETWRQVYAREL-EPIADVDQ 370
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF ++ DR+ ++ + + EQL+ L+ F+D RLPEL FRYRARNFP TL+E+E +
Sbjct: 371 NLYGGFVSNDDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEEEYE 430
Query: 419 DWLEHRKKMLTRSR-----IEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIP 469
W + R + L R + + +++ L + D + ++ LY+Y Q ++P
Sbjct: 431 QWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLYDYAQQILP 488
>gi|171059394|ref|YP_001791743.1| exonuclease I [Leptothrix cholodnii SP-6]
gi|170776839|gb|ACB34978.1| Exodeoxyribonuclease I [Leptothrix cholodnii SP-6]
Length = 484
Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats.
Identities = 189/478 (39%), Positives = 271/478 (56%), Gaps = 11/478 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F +DYETFGR DRPAQFAG+R D +I++ + C+PA DYLPDPE+ +TG
Sbjct: 4 HTFFWHDYETFGRSPRSDRPAQFAGIRTDLDLNEIDAPLMQHCQPAPDYLPDPESCLLTG 63
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I PQ L GV E F+ I + P T +GYN+IRFDD +R++F+RN D Y W
Sbjct: 64 IVPQTCLELGVPEHTFADAIEDQLARPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREW 123
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLDV+R YA PDGIQWP DDG SFKL+ L ANGI H AHDA +DV
Sbjct: 124 QNECGRWDLLDVVRCCYALRPDGIQWPRHDDGRPSFKLEHLTAANGISHEGAHDALSDVR 183
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID--IQNMTPLVHVSGMFGASRSNTALI 240
AT+AL LI+ +PKLF++ R K+ + I+ + P +H+SGM+G R A++
Sbjct: 184 ATIALARLIKNARPKLFDFCLRLRKKDAVLAEIEGAQRQGRPFLHISGMYGPERGCLAIV 243
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP K+ +I +L+ D LD+ + RLF EL +G+ +PIK +H+NK
Sbjct: 244 WPLAPHPTNKNEIIVWDLAEDPGELFTLDAEAIRARLFVKASELPEGVGRLPIKSIHINK 303
Query: 300 CPIL-MPIDYCKKEHFERWGIDHKRCLENLTL-LRQQTNLRDRFKAIYNKPYTSSSQDVD 357
P++ + E +RWGID + L + L R+ + + ++ +P + DVD
Sbjct: 304 SPVVIAQLKTLGAEMAQRWGIDKDQALHHAELAARKGATMAGIWPEVFARPAAAEPPDVD 363
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF DR+ + R+ APE+L+ F+D RL EL R+RARNFP TL ++E+
Sbjct: 364 EDLYGGFIGQDDRRTLQRVRALAPEKLADKLPTFNDPRLDELLLRWRARNFPQTLRDEER 423
Query: 418 QDWLEHRKKMLTRS-----RIEEYKNKLQSL-SGEYKGDEGKEGLINALYEYLQWVIP 469
W H + L + + ++ +L + DE ++ ALY+Y + + P
Sbjct: 424 ARWERHCARRLHDGAGGAMTLAAFFERIDTLGEALPEDDERGPEILGALYDYAEQIAP 481
>gi|237798642|ref|ZP_04587103.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021495|gb|EGI01552.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 476
Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats.
Identities = 193/475 (40%), Positives = 280/475 (58%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPGDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R K +++ + + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRTKQKVQDQVRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L + L+T HD L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQYDAETLKQHLYTRHDALEEGQLPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L +D+ + +Y K +S+D +
Sbjct: 298 CPVVAPLGVLRSEDQQRLQLDLTAYQARAAQLNDSREVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDGWPFDDARLPELLFRYRARNFPDTLSTEEQQ 417
Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
WL ++ L + ++++ L +S + ++ +Y+Q +
Sbjct: 418 RWLAFCQQRLRSPESGAPNTLQDFTKALIDVSL--NATPAQLEVLRQWQDYVQQL 470
>gi|330957883|gb|EGH58143.1| exonuclease I [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 476
Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats.
Identities = 197/475 (41%), Positives = 283/475 (59%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDADLNEIAPPVNLYCQPSDDILPHPAACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPTLLAEKGLSEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R+K +++ I + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFALRSKQKVQDQIRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLDQDASTLKQRLYTRHEALSEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E ER +D L + +D+ A+Y K ++S+D +
Sbjct: 298 CPVIAPMGVLRSEDQERLQLDMAGYESRAAALNESREVWQDKVLALYGKEDFTASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF AD DR++ +++ PE+L+ PF D RLPEL FRYRARNFPHTLS +E+Q
Sbjct: 358 QLYDGFIADRDRRLCEQVRLADPERLAGDAWPFDDTRLPELLFRYRARNFPHTLSREEQQ 417
Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L + ++++ L LS + ++ +Y Q +
Sbjct: 418 RWQHFCQERLRNPEWGAPNTLQDFTKALIELSL--NATPDQLDVLRQWQDYAQLL 470
>gi|68346412|gb|AAY94018.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf-5]
Length = 497
Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats.
Identities = 182/473 (38%), Positives = 280/473 (59%), Gaps = 13/473 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
YDYET G + DRP Q AG+R D +I+ +C+P+DD LP P A ITG
Sbjct: 24 TSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITG 83
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITP + G+ EA+F R+H+ + P TC +GYN +RFDD +R YRNF+D Y W
Sbjct: 84 ITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 143
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDL+DV+R YA P GI WP + G S KL+ L ANGI+H AHDA +DV
Sbjct: 144 QGGNSRWDLIDVVRTAYALRPQGIVWPE-EQGQVSLKLERLTAANGIDHGQAHDALSDVR 202
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL L+R+K+P+L+++L+ R+K ++ + + + P+VH+SG F A+R ++ P
Sbjct: 203 ATIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVVLP 260
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKCP 301
+AWHPR ++++I C+L D + +LD+ L +RL+T ++ L+G +PVP+K +H+N+CP
Sbjct: 261 LAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCP 320
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQL 360
++ P+ + E +R +D + L + RD+ IY ++S D + QL
Sbjct: 321 VVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQL 380
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGF D DR++ +++ P L+ PF D RLPEL FRYRARNFP TL++ E++ W
Sbjct: 381 YDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERW 440
Query: 421 LEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
L ++ L + +E ++ L+ D + +++ +Y+Q +
Sbjct: 441 LVFCQQRLLDPQLGAPNTLESFRQGLEQ--SLLSADPMQRQVLDQWQDYVQAL 491
>gi|332141096|ref|YP_004426834.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
gi|327551118|gb|AEA97836.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
Length = 478
Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats.
Identities = 191/474 (40%), Positives = 276/474 (58%), Gaps = 8/474 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ +D+ETFG D P QFA VR D + A+DYLP PEA +T
Sbjct: 5 TPTFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+ +RDG EA+F+ +I+ S PNTC +G+N+IRFDD SR +FYRNFYD Y
Sbjct: 65 GITPQQTIRDGSNEADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSRE 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD++DV RA YA PDGI WP R+DG+ SF+L+ L AN I H NAHDA DV
Sbjct: 125 WRNGNSRWDIIDVARACYALRPDGINWPLREDGSPSFRLEALTAANNIGHDNAHDALNDV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT++L LI+EK+P+LF+Y RNK+ + + ID+ + L+H+S AS+ +
Sbjct: 185 YATISLAKLIKEKQPRLFDYALSLRNKHSVMQQIDLSKPSVLLHISSKLPASQGCCTWVM 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKC 300
P+A HP ++ I +LS D+ + + ++ + L+ D +K +H+N+
Sbjct: 245 PIAKHPTNSNAFIVIDLSHDIDSVLNDSADEIKQALYAPSDTYDDARERPGLKLIHVNRS 304
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + +++ ER G+D +RCL+N L +L + AIY + SS D+D L
Sbjct: 305 PFITTAKAMTEDNAERLGLDRERCLDNYKKLASTPDLVSKIVAIYEEERHSSELDIDHAL 364
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GF +D DR+ + ++ PE L+T L +L FRYRARN+P+TLS E
Sbjct: 365 YSGGFLSDEDRRWCENVINAKPEDLATFGDKTQHEGLKKLLFRYRARNYPNTLSADEMTK 424
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W HR+ LT S +E Y +L+SL+ E+ + K+ ++ ALY+Y + +
Sbjct: 425 WQYHRQARLTDSDFHGSITLETYMMRLESLAHEHSDNPEKQAILRALYQYAENL 478
>gi|330950132|gb|EGH50392.1| exonuclease I [Pseudomonas syringae Cit 7]
Length = 476
Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats.
Identities = 191/475 (40%), Positives = 277/475 (58%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I + C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRSDRALQMAGIRTDTDLNEIAAPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++Y + R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYFFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + D+ A+Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSEHREVWHDKLAAVYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L + + ++ L + + ++ +Y +
Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTAAL--IKCSLSAAPEQLEVLRQWQDYANEL 470
>gi|331009925|gb|EGH89981.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 434
Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats.
Identities = 189/434 (43%), Positives = 270/434 (62%), Gaps = 5/434 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D + T L + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLTRSR 432
W + ++ L+
Sbjct: 418 RWQDFCQQRLSDPE 431
>gi|330877835|gb|EGH11984.1| exonuclease I [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 476
Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats.
Identities = 188/475 (39%), Positives = 281/475 (59%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D L +G +PVP+K +H+N+
Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSENREVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAEEQH 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L+ + ++++ + L S + ++ ++ +
Sbjct: 418 RWQDFCRQRLSSPEWGAPTTLQDFTSALTECSL--SATPEQLEVLRQWQDHALQL 470
>gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01]
gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01]
Length = 481
Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats.
Identities = 186/454 (40%), Positives = 277/454 (61%), Gaps = 11/454 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DRP Q AG+R D +I +C+P+DD LP P A +
Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI PQ+ + G+ E EF R+H S P TC GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGIDPQRLQQLGLDEGEFMTRVHAALSTPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP +DG S KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWPE-EDGRVSLKLERLTQANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L L+RE++P+L+++LY R+K ++ I + + P++H+SG F A+R A +
Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRL--LQPMLHISGRFSAARHYLAPV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D DLD+ L RL+T ++L +G VPVP+K +H+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQADPTPLLDLDAEVLRSRLYTRREDLAEGEVPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R +D C N+ +LR Q +D+ IY + ++S D +
Sbjct: 298 CPVVAPLSVLRDTDRQRLQLDWSHCERNVEMLRDAQPLWQDKLTDIYREESFAASSDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P+ L+ PF D RLPEL FRYRARNFP +LS E Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRSAQPQSLANDKWPFDDARLPELLFRYRARNFPDSLSPDEGQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGE 446
W++ ++ L+ + + ++ L+ L +
Sbjct: 418 RWVDFCRQRLSDPQFGAPNTLAQFHAALEQLRAD 451
>gi|89900857|ref|YP_523328.1| exonuclease I [Rhodoferax ferrireducens T118]
gi|89345594|gb|ABD69797.1| Exodeoxyribonuclease I subunit C [Rhodoferax ferrireducens T118]
Length = 485
Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats.
Identities = 184/480 (38%), Positives = 277/480 (57%), Gaps = 14/480 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG + DRPAQFA +R D + I + + +C+PA D+LPDP+A ITG
Sbjct: 8 HTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ L G+ E +F+ +I Q FS+P T +GYN IRFDD +R +F+RN D Y W
Sbjct: 68 ITPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLDV+R YA PDG++WP +G SFKL DL+ ANG+ H AHDA +DV
Sbjct: 128 QNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAHDALSDVR 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRSNTA 238
AT+AL LI+ +PKLF++ + K+++ + + P +H+SGMF R A
Sbjct: 188 ATIALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFAPERGCLA 247
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
L+ P+A HP K+ ++ +L+ D R +++ Q+ RLFT +L +G+ +P+K +HL
Sbjct: 248 LMWPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRLPVKSIHL 307
Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
NK P ++ +RWG++ L N + ++ + A++ +P ++ DV
Sbjct: 308 NKSPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVFKRPAAATP-DV 366
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF + DR+ ++ + + ++L++ F D RL EL +RYRARNFP +LS E
Sbjct: 367 DEDLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNFPQSLSADE 426
Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
W HR L IE+ +L SL+ DE E ++ ALY+Y + + P+
Sbjct: 427 LARWEAHRSARLFDGEGGALTIEQLFEELDSLAE--SADERGEAILGALYDYAELIAPQR 484
>gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas fluorescens Pf-5]
Length = 475
Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats.
Identities = 184/475 (38%), Positives = 282/475 (59%), Gaps = 14/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT YDYET G + DRP Q AG+R D +I+ +C+P+DD LP P A I
Sbjct: 1 MT-SLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F R+H+ + P TC +GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P GI WP + G S KL+ L ANGI+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDVVRTAYALRPQGIVWPE-EQGQVSLKLERLTAANGIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL L+R+K+P+L+++L+ R+K ++ + + + P+VH+SG F A+R ++
Sbjct: 179 VRATIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + +LD+ L +RL+T ++ L+G +PVP+K +H+N+
Sbjct: 237 LPLAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINR 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D + L + RD+ IY ++S D +
Sbjct: 297 CPVVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P L+ PF D RLPEL FRYRARNFP TL++ E++
Sbjct: 357 QLYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQE 416
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
WL ++ L + +E ++ L+ D + +++ +Y+Q +
Sbjct: 417 RWLVFCQQRLLDPQLGAPNTLESFRQGLEQ--SLLSADPMQRQVLDQWQDYVQAL 469
>gi|28871453|ref|NP_794072.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28854704|gb|AAO57767.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 476
Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats.
Identities = 188/475 (39%), Positives = 280/475 (58%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L+ + ++++ + L S + ++ ++ +
Sbjct: 418 RWQDFCRQRLSSPEWGAPTTLQDFTSALNECSL--SATPEQLEVLRQWQDHALQL 470
>gi|298488609|ref|ZP_07006639.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|298156950|gb|EFH98040.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
Length = 437
Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats.
Identities = 189/434 (43%), Positives = 269/434 (61%), Gaps = 5/434 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + +D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQ 417
Query: 419 DWLEHRKKMLTRSR 432
W + ++ L+
Sbjct: 418 RWQDFCQQRLSDPE 431
>gi|213970280|ref|ZP_03398410.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
gi|301382938|ref|ZP_07231356.1| exonuclease I [Pseudomonas syringae pv. tomato Max13]
gi|302063791|ref|ZP_07255332.1| exonuclease I [Pseudomonas syringae pv. tomato K40]
gi|302133521|ref|ZP_07259511.1| exonuclease I [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213924952|gb|EEB58517.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
gi|331018014|gb|EGH98070.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 476
Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats.
Identities = 189/475 (39%), Positives = 280/475 (58%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K ++++ I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQEHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D L +G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESLEVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSADEQH 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + +K L+ + ++++ + L S + ++ ++ +
Sbjct: 418 RWQDFCRKRLSSPEWGAPTTLQDFTSALNECSL--SATPEQLEVLRQWQDHALQL 470
>gi|77460659|ref|YP_350166.1| exonuclease I [Pseudomonas fluorescens Pf0-1]
gi|77384662|gb|ABA76175.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf0-1]
Length = 476
Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats.
Identities = 191/475 (40%), Positives = 288/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I++ +C+P++D LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDG+ WP+ D+G + KL+ L AN I+H NAH+A +D
Sbjct: 120 EWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNIDHGNAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL+++L+ R+K ++ I + + P+VH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRL--LQPMVHISGRFSAARSYVGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR K+++I C+L D + DLD+ L +RL+T D+L +G +PVP+K +H+NK
Sbjct: 238 LPLAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINK 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + + +R G+D L +D+ AIY +S++D +
Sbjct: 298 CPVVAPLSVLRADDQQRLGLDMALYQARALRLSDAQQVWKDKVSAIYASEDFTSNEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ T P QL+ PF D RLPEL FRYRARNFP TL+ +E++
Sbjct: 358 QLYDGFIGDRDRRLCEQVRATDPGQLAREQWPFDDERLPELLFRYRARNFPDTLNFEEQE 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L+ + ++ + ++ + ++ Y+Q +
Sbjct: 418 RWRIFCRQRLSAPEWGAPNTLQSFAEAMEQWLL--SAAPMQAEVLVEWQNYVQAL 470
>gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
Length = 478
Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats.
Identities = 197/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++
Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D +
Sbjct: 298 CPVVAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 418 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 470
>gi|302188463|ref|ZP_07265136.1| exonuclease I [Pseudomonas syringae pv. syringae 642]
Length = 476
Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats.
Identities = 191/475 (40%), Positives = 277/475 (58%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L ++ D+ +Y K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSERREVWHDKLATVYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L + + ++ L + + ++ +Y +
Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTAAL--IECSLSAAPEQLEVLRQWQDYAHEL 470
>gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ]
gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ]
Length = 476
Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats.
Identities = 198/476 (41%), Positives = 283/476 (59%), Gaps = 13/476 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DRP Q AG+R D +I + +C+PADD LP P A +
Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP+ G+ EAEF R+H ++P TC GYN++RFDD SR+ YRNF+D Y
Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI WP ++G S +L+ L ANGIEH AHDA AD
Sbjct: 121 EWQAGNSRWDLIDLLRTAYALRPEGIHWPQ-EEGRVSLRLERLTAANGIEHGQAHDALAD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL L+RE++PKL+ YLY R+K ++ I + + PLVHVSG F A R A++
Sbjct: 180 VRATIALARLLRERQPKLYGYLYQLRSKQRVLDQIRL--LRPLVHVSGRFAAERGYLAVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG-LVPVPIKEVHLNK 299
P+AWHP ++++I C+L D DLD+ L +RL+ +EL PVP+K VH+N+
Sbjct: 238 LPLAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP+L P+ ++E R +D C + LL Q +++ IY +S+D +
Sbjct: 298 CPVLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKLARIYMGDEFPASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY GFF + DR++ +++ R PE L N F D RLPEL FRYRARNFP TL+ E +
Sbjct: 358 QLYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTAAEGE 417
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W E ++ L+ + + ++ +L+ L + DE ++ A EY + ++
Sbjct: 418 CWQEFCRRRLSDAAWGAPCTLGDFNVQLEQLLAQ--ADEEHRPILVAWREYARQLL 471
>gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1]
Length = 480
Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats.
Identities = 196/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 3 VNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 63 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 123 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++
Sbjct: 182 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 240 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D +
Sbjct: 300 CPVVAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 360 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVDERQ 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 420 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472
>gi|34496784|ref|NP_900999.1| exonuclease I [Chromobacterium violaceum ATCC 12472]
gi|34102639|gb|AAQ59004.1| exodeoxyribonuclease I [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats.
Identities = 183/470 (38%), Positives = 277/470 (58%), Gaps = 6/470 (1%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+NH F +DYETFG DRP+QFAG+R D + +I + +C+PA DYLP +A
Sbjct: 1 MSNHTFFWHDYETFGAVPRQDRPSQFAGIRTDAELNEIGEPVMLYCRPAPDYLPTLQACL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGITPQ + GV E EF+ I + + P T +GYN++RFDD +R +F+RN D Y
Sbjct: 61 LTGITPQLCRQQGVAEHEFAGVIERELATPATIGVGYNSLRFDDEVTRFLFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W N RWDLLD++RA YA PDGI WP +DG TSFKL+ L+ ANG+ H +AHDA +
Sbjct: 121 REWQNHCGRWDLLDLVRATYALRPDGIVWPKHEDGRTSFKLEHLSAANGLAHASAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+AL LIR+++PKLF+Y R K+ ++ + + + P++HVSGM+G R N A+
Sbjct: 181 DVRATIALARLIRQRQPKLFDYYLTLRKKDAVKVQLSLHDPKPVLHVSGMYGVERGNLAV 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+A HP + VI +L+ D + L + + +R+FT DEL +G+ +P+K +H+N
Sbjct: 241 VWPLAAHPTNANEVIVWDLAHDPAELRGLSADDIRQRMFTRADELPEGVARLPVKTIHIN 300
Query: 299 KCPI-LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K P + + ++ RWG+D + R +L ++ +Y + QDVD
Sbjct: 301 KSPFVVANLKALGDDNAARWGMDLAAIHRHAEAARALPDLSALWRRVYQRE-AGEPQDVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF ++ DR+ + ++ R + QL+ F D +L EL FRYRARNFP TLS E+
Sbjct: 360 QNLYGGFVSNNDRKALQKMRRLSAAQLAGEMALFEDPQLAELLFRYRARNFPDTLSGDEQ 419
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+ W + L +S ++ +L L + +G+ L+ + +Y +
Sbjct: 420 KRWKAWCQARLAQS-WPAFQQELAELRAG-ELTDGQRNLLQQVADYAASL 467
>gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
Length = 480
Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats.
Identities = 196/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 3 VNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 63 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 123 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++
Sbjct: 182 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 240 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D +
Sbjct: 300 CPVVAPLSVLRGEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 360 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 420 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472
>gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
Length = 480
Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats.
Identities = 196/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 3 VNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 63 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 123 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++
Sbjct: 182 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 240 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D +
Sbjct: 300 CPVVAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 360 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 420 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472
>gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2]
Length = 480
Score = 636 bits (1642), Expect = e-180, Method: Composition-based stats.
Identities = 196/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 3 VNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 63 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 123 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++
Sbjct: 182 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 240 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ C + LLRQ D+ A+Y + S+S D +
Sbjct: 300 CPVVAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 360 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNAAERQ 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 420 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472
>gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1]
gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1]
Length = 480
Score = 636 bits (1642), Expect = e-180, Method: Composition-based stats.
Identities = 196/475 (41%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 3 VNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 63 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 123 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++
Sbjct: 182 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 240 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ C + LLRQ D+ A+Y + S+S D +
Sbjct: 300 CPVVAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 360 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 420 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472
>gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7]
gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7]
Length = 478
Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats.
Identities = 198/475 (41%), Positives = 287/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 1 MNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGITPQRLAERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 121 EWQGGNSRWDLIDMVRTAYALRPEGIQWPE-ADGRVSLKLELLTAANGLEHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ I + + PLVHVSG F A R +++
Sbjct: 180 VRATIALARLIRQRQPRLYDYLYQLRSKHRVLDQIHL--LQPLVHVSGRFSAERHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + +L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLRADPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E R GID + C LLRQ Q ++ Y++ ++S+D +
Sbjct: 298 CPVVAPLSVLRAEDRLRTGIDVEACQRRAELLRQRQAAWTEKLALAYSEESFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ R PEQL+ PF D RL ELFFRYRARNFP TLS E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQLRRAEPEQLAREQWPFDDIRLQELFFRYRARNFPETLSPSERQ 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ +++ E G ++ A +Y +
Sbjct: 418 QWEAFCRNRLSHEEFGAPNTLPAFEAAMEACRQEQGGTLP--AVLAAWRDYAGEL 470
>gi|239994498|ref|ZP_04715022.1| exodeoxyribonuclease I [Alteromonas macleodii ATCC 27126]
Length = 476
Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats.
Identities = 190/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ +D+ETFG D P QFA VR D I A+DYLP PEA +T
Sbjct: 3 APTFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVIGKPINIMSAIANDYLPHPEACLVT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+ +RDG EA+F+ RI+Q S PNTC +G+N+IRFDD SR +FYRNFYD Y
Sbjct: 63 GITPQQTIRDGSNEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSRE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD++D+ RA YA PDGI WP R+DGA SFKL+ L AN I H NAHDA +DV
Sbjct: 123 WRNGNSRWDIIDLARACYALRPDGINWPRREDGAPSFKLEALTAANNIGHENAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+AL LI+EK+P+LF+Y R+K + + ID+ + L+H+S AS+ +
Sbjct: 183 YATIALAKLIKEKQPRLFDYALSLRSKQTVMQQIDLTKPSVLLHISSKLPASQGCCTWVM 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
PVA HP ++ I +LS D+ + ++ + L+ D + +K +H+N+
Sbjct: 243 PVAKHPTNNNAFIAIDLSHDIDSLVNDTPEEIRQALYAPSDTFDDALERPGLKLIHVNRS 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + +++ R G+D +RCL+N +L L + +Y+ S D+D L
Sbjct: 303 PFITTAKAMTEDNAARLGLDRERCLDNYKVLASMPELATKIVDVYDDDIQSGELDIDHAL 362
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GF D DR+ +R++ P+ L+TL+ L + FRYRARN+P+TL+ E
Sbjct: 363 YSGGFLNDEDRRWCERVIEAQPDDLATLSEKTQHEGLRKQLFRYRARNYPNTLTADEMTR 422
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W HR+ LT S +E Y +L+SL+ E+ + K+ ++ ALY+Y + +
Sbjct: 423 WQHHRQARLTDSAFHGSITLENYMMRLESLAHEHSDNPEKQAILRALYQYAENL 476
>gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1]
gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1]
Length = 477
Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats.
Identities = 187/475 (39%), Positives = 286/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R G+D L QQ +++ + IY K + S+D +
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFAPSEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY+GF D DR++ +++ P QLS F D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTPEERQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L+ + + +++ Q DE ++ A + + +
Sbjct: 418 RWYDFCQQRLSEPQWGAPNTLGDFEQARQQ--AWEGADEAGRRVLEAWQLHARQL 470
>gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
Length = 480
Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats.
Identities = 195/475 (41%), Positives = 284/475 (59%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 3 VNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 63 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 123 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R +++
Sbjct: 182 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ WHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 240 LPLVWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ + C LLRQ D+ A+Y + S+S D +
Sbjct: 300 CPVVAPLSVLRAEDRQRTGIELEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 360 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 420 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472
>gi|329907300|ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
gi|327547025|gb|EGF31914.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
Length = 477
Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats.
Identities = 182/476 (38%), Positives = 275/476 (57%), Gaps = 10/476 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
++ F+ +DYETFG + DRPAQFA +R D + +I + +C+PA+DYLPDP++ IT
Sbjct: 3 SHTFLWHDYETFGVNTRSDRPAQFAAIRTDAELNEIGDEIMLYCQPANDYLPDPQSCLIT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ L+ G+ E +F+ I FS T +GYN IRFDD +R +F+RN D Y
Sbjct: 63 GITPQVCLQRGLPEYQFAAAIEAAFSASGTVGVGYNTIRFDDEITRFLFWRNLIDPYARE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N RWDL+DV+R YA P+GI WP D+G SF+L+ L ANGI H AHDA +DV
Sbjct: 123 WQNQCGRWDLMDVVRMTYALRPEGIHWPMNDEGKPSFRLELLTKANGIAHAAAHDALSDV 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIR ++PKLF++ + K+++ I + P +HVSGMF A R ++
Sbjct: 183 RATIALARLIRTQQPKLFDFCFALHKKDRVSAEIGLPARKPFLHVSGMFPAERGCLGVMW 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A +P K+ VI +LS D LD+ + R+FT +L +G+ +PIK +HLNK
Sbjct: 243 PLATYPTNKNEVIAWDLSHDPSELATLDADTIRLRMFTRSADLPEGVTRLPIKTIHLNKS 302
Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
P+++ + E+W ID ++ + T+ ++ ++ ++ +P ++ DVD
Sbjct: 303 PMVVGNLKTLSPAMAEKWQIDLEQAHRHATIAATLVDMDALWQQVFQRPAQATP-DVDED 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY+GF + DR+ + + +P L+ + F D RL EL FRYRARNFP TL E +
Sbjct: 362 LYNGFVGNGDRRKLTELRALSPTALAKTHPGFDDVRLEELLFRYRARNFPDTLDAAEAER 421
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
W +HR L ++ ++ LS + D E ++ ALY+Y++ + P
Sbjct: 422 WEQHRSDRLFEGSAGARTVDILFGEIDQLSEQ--ADTRGEEILGALYDYVEMIAPA 475
>gi|330973535|gb|EGH73601.1| exonuclease I [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 476
Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats.
Identities = 193/474 (40%), Positives = 273/474 (57%), Gaps = 11/474 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + AIY K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGE-----YKGDEGKEGLINALYEYLQWV 467
W + ++ L N L + + ++ +Y +
Sbjct: 418 RWRDFCQQRLRNPEWGA-PNTLHDFTAAWVECSLSAGPEQLEVLRQWQDYAHRL 470
>gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp]
gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp]
Length = 481
Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats.
Identities = 184/453 (40%), Positives = 273/453 (60%), Gaps = 11/453 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DRP Q AG+R D +I +C+P+DD LP P A +
Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI PQ+ + G+ E EF R+H S P TC GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGIDPQRLQQLGLDEGEFVTRVHAELSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP ++G S KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIEWPQ-EEGRVSLKLERLTQANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L L+RE++P+L+++LY R+K ++ I + + PL+HVSG F A+R A +
Sbjct: 180 VRATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRL--LQPLLHVSGRFSAARHYLAPV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +LD+ L RL+T ++L + PVP+K +H+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQADPAPLLELDADTLRARLYTRREDLAEHEAPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R +D C N L+ +D+ IY + ++S D +
Sbjct: 298 CPVVAPLSVLRDADRQRLQLDWSVCERNAERLKAAQALWQDKLPTIYREEAFAASTDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P+ L++ N PF D RLPEL FRYRARNFP +LS E+Q
Sbjct: 358 QLYDGFIGDRDRRLCEQVRNAQPQALASQNWPFDDARLPELLFRYRARNFPDSLSPTEQQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSG 445
W+E + L + + +++ L L+
Sbjct: 418 RWMEFCRLRLNDAQYGAPNTLAQFRAALDELAA 450
>gi|330966612|gb|EGH66872.1| exonuclease I [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 431
Score = 634 bits (1637), Expect = e-180, Method: Composition-based stats.
Identities = 187/434 (43%), Positives = 266/434 (61%), Gaps = 5/434 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I +C+P+DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA P+GI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPEGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+P+L++YL+ R K +++K I + M PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIREKQPRLYDYLFTLRTKQKVQKHIHL--MKPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T D L +G +PVP+K +H+N+
Sbjct: 238 VPLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L + +D+ + +Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLKLDMAGYQARAAQLSESREVWQDKLQVLYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLP+L FRYRARNFP TLS E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSTAEQH 417
Query: 419 DWLEHRKKMLTRSR 432
W + ++ L+
Sbjct: 418 RWQDFCRQRLSSPE 431
>gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1]
Length = 477
Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats.
Identities = 189/475 (39%), Positives = 286/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIQWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R G+D L QQ +++ + IY K S S+D +
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFSPSEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY+GF D DR++ +++ P QLS + F D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPETLTGEERQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L+ + + +++ Q DE ++ A + + +
Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEKARQQ--AWEGADEAGRRVLEAWQLHARQL 470
>gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440]
gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440]
Length = 477
Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats.
Identities = 187/475 (39%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPEGIEWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R G+D L QQ +++ + IY K + S+D +
Sbjct: 298 CPVVAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFAPSEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY+GF D DR++ +++ P QLS F D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTGEERQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L+ + + +++ Q DE ++ A + + +
Sbjct: 418 RWYGFCQQRLSEPQWGAPNTLGDFEKARQQ--AWEGADEAGRRVLEAWQLHARQL 470
>gi|66047247|ref|YP_237088.1| exonuclease I [Pseudomonas syringae pv. syringae B728a]
gi|63257954|gb|AAY39050.1| Exodeoxyribonuclease I [Pseudomonas syringae pv. syringae B728a]
Length = 476
Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats.
Identities = 193/474 (40%), Positives = 274/474 (57%), Gaps = 11/474 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D D+ L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALSDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D T L + + AIY K ++S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSENREVWHGKLAAIYGKDDFAASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DWLEHRKKMLTRSRIEEYKNKLQSLSGE-----YKGDEGKEGLINALYEYLQWV 467
W + ++ L N L + + ++ +Y +
Sbjct: 418 RWRDFCQQRLRNPEWGA-PNTLHDFTAAWVECSLSAGPEQLEVLRQWQDYAHRL 470
>gi|288942185|ref|YP_003444425.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
gi|288897557|gb|ADC63393.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
Length = 477
Score = 633 bits (1634), Expect = e-179, Method: Composition-based stats.
Identities = 202/477 (42%), Positives = 295/477 (61%), Gaps = 12/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ F +DYET+G D DRP QFAGVR D ++ V FC+P+DD LP P+A +
Sbjct: 1 MSDTFYWHDYETWGADPRRDRPCQFAGVRTDADLNEVGDPLVLFCRPSDDLLPHPDACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TG+TPQ+ R+GVVEAEF+R IH S P TC +GYN++RFDD +R++FYRNF+D Y
Sbjct: 61 TGLTPQRVAREGVVEAEFARAIHAELSRPGTCGVGYNSLRFDDEVTRHLFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W +GNSRWDL+DV+R +A P+GI+WP D+G TSF+L+ L +ANGI+H AHDA AD
Sbjct: 121 EWRSGNSRWDLIDVLRLAHALRPEGIEWPLNDEGTTSFRLEQLTVANGIDHGQAHDALAD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL +R+ +P+LF Y R+K ++R L+D PL+HVS F A+ A I
Sbjct: 181 VRATIALARRLRDIQPRLFSYALTLRDKRRVRALLD--ERRPLLHVSARFPAALGCIAPI 238
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
PVA HP + VI +L D +L ++ +RLFT ++L G+ VP+K VH+N
Sbjct: 239 CPVAAHPTNSNGVICFDLRADPSQLLELSVEEIRRRLFTPSEDLPAGVERVPLKTVHVNH 298
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358
P+L P+ E ERW ID R + + + + + R +A++ +P D +
Sbjct: 299 VPMLAPLATLTPERAERWSIDPARVVRHAQWIAASSIAIESRVRAVHERPL-PVETDPEL 357
Query: 359 QLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF +D DR+ D+++R+ P +L+T FSD RL L FRYRARN+P TL+ +E+
Sbjct: 358 MLYSGGFLSDADRRACDQVVRSNPAELATAPPRFSDPRLGTLLFRYRARNWPETLTPEER 417
Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+DW +R LT +IE Y+ +L L+G + D + +++AL ++ + V+
Sbjct: 418 EDWDAYRFMRLTDPDGGASLQIEGYEARLAELAGVHDDDPARLAILDALGDWAEQVL 474
>gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58]
gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58]
Length = 480
Score = 633 bits (1634), Expect = e-179, Method: Composition-based stats.
Identities = 196/475 (41%), Positives = 284/475 (59%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YDYET G D DRP Q AG+R D +I +C+P+DD LP P A I
Sbjct: 3 VNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLI 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EA+F R+H + P TC+ GYN++RFDD +R YRNF+D Y
Sbjct: 63 TGITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAR 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GIQWP DG S KL+ L ANG+EH AHDA +D
Sbjct: 123 EWQGGNSRWDLIDMVRTAYALRPEGIQWPQ-LDGRLSLKLEMLTAANGLEHGQAHDALSD 181
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L++YLY R+K+++ + + + PLVHVSG F A R ++
Sbjct: 182 VRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRL--LQPLVHVSGRFSAERHFLSVA 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D +L + L +RL+T DEL +G +PVP+K++ +N+
Sbjct: 240 LPLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNR 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R GI+ C + LLRQ D+ A+Y + S+S D +
Sbjct: 300 CPVVAPLSVLRAEDRQRTGIELDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQ 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ PEQL+ PF D RL ELFFRYRARNFP TL+ E+Q
Sbjct: 360 QLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPETLNVAERQ 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + L+ + + ++ L++ E G ++ A +Y +
Sbjct: 420 QWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLP--AVLAAWRDYAAEL 472
>gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans
DMS010]
gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans
DMS010]
Length = 479
Score = 633 bits (1634), Expect = e-179, Method: Composition-based stats.
Identities = 192/475 (40%), Positives = 287/475 (60%), Gaps = 10/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT +DYET G D DRP QFAGVR D I + +CKP+ DYLP P+A +
Sbjct: 1 MT-TLYWHDYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALV 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TG+TPQ A ++G+ EAEF ++IH + P TC +GYN++RFDD ++R +RNFYD+Y
Sbjct: 60 TGLTPQLAEKEGLNEAEFIKQIHDELAAPGTCGVGYNSLRFDDEFTRFTLFRNFYDAYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W +GNSRWD++D++R A P+GI WP+R+DG SF+L+DL ANGIEH AHDA AD
Sbjct: 120 EWQSGNSRWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIEHSGAHDALAD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + LI+ +PKL++Y+++ R K L L+++ P+VHVS M+ TAL+
Sbjct: 180 VYATIEMARLIKNAQPKLYDYVFERRRKQTLAPLLNLNERKPVVHVSRMYPGEYCGTALV 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A P + +I +L D + +LD+ L +RLFT +L +G +K +H+NK
Sbjct: 240 VPLAKDPNNNNGIIVYDLRHDPKDLIELDAETLRERLFTPTADLPEGATRPALKTLHINK 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CP+++P + ER ID ++L +L L ++ AI+ P D D+
Sbjct: 300 CPVVVPENTLDDAAAERLQIDRTAHYQHLDMLNTAQGLTEKLNAIFTAPTYDEIDDPDAS 359
Query: 360 LY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GFF+D D++ MD I P L TL++PF D RLPEL FRYRARN+P +L+++E++
Sbjct: 360 LYGGGFFSDNDKRKMDVIRNADPAMLPTLSVPFEDPRLPELLFRYRARNWPESLNQEEQE 419
Query: 419 DWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W+ +R+ L +E ++ L S + +E ++ ++ L +Y Q +
Sbjct: 420 QWVLYRQHRLGNQAADKVLNVERFETALAE-SRQQDLNEEQKAVLEQLEQYAQRL 473
>gi|327394409|dbj|BAK11831.1| exodeoxyribonuclease I SbcB [Pantoea ananatis AJ13355]
Length = 412
Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats.
Identities = 215/411 (52%), Positives = 286/411 (69%), Gaps = 1/411 (0%)
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
ITGITPQ A GV EAEF+ RIH F+ TC++GYNN+RFDD +RNIFYRNFYD Y
Sbjct: 1 MITGITPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPY 60
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
WSW NGNSRWDLLDVMRA YA P+GI WP +DG SF+L+ L ANG+ H NAHDA
Sbjct: 61 GWSWQNGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAM 120
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
+DVYATLA+ L++EK+PKLFE+L+ +RNKN+L LIDI M PLVHVSGMFGA+R NT+
Sbjct: 121 SDVYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTS 180
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
+ P+AWHP ++++I +L+GDM LD+ L +RL+T EL +P+K VH+N
Sbjct: 181 WVVPLAWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHIN 240
Query: 299 KCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVD 357
KCP+L P + + E R GID K CL+NL LRQ +R++ AI+ + S DVD
Sbjct: 241 KCPVLAPANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSDDVD 300
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
+QLYDGFF+D DR M+ I +TAP L L+L F R+ +L FRYRARNFP TL + E+
Sbjct: 301 TQLYDGFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAEQ 360
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
Q WL+HR+++L +++ + +L+SL+ ++ D+ K + ALY Y Q ++
Sbjct: 361 QRWLQHRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELV 411
>gi|331004853|ref|ZP_08328270.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
gi|330421307|gb|EGG95556.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
Length = 476
Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats.
Identities = 185/473 (39%), Positives = 275/473 (58%), Gaps = 11/473 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N +DYET+G + D+P+QFAG+R D + V +C+P+ D LP PEA +TG
Sbjct: 2 NTLYWHDYETWGASPSQDKPSQFAGIRTDEDLNIVGEPLVIYCQPSSDCLPQPEACLLTG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKAL++G+ E F +IHQ + TC +GYN+IRFDD +R YRNFYD Y W
Sbjct: 62 ITPQKALKEGLSEPIFFEKIHQQLAQEKTCGVGYNSIRFDDEMTRYGLYRNFYDPYEREW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D++R YA P+ + WP+ D G SFKL+ L+ ANG+ H AHDA +DVY
Sbjct: 122 QNGNSRWDIIDMVRLCYALRPETLCWPTNDSGVVSFKLELLSKANGLLHDAAHDALSDVY 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LI++K+P+L++Y Y R+KN+++ L+++ P++HVS F SR L+ P
Sbjct: 182 ATIALAKLIKQKQPELYQYAYSLRDKNKVKALMNVAQRKPILHVSSRFPVSRGCAGLMLP 241
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+A HP K+SVI +LS D +L + ++A+RL+ +L +G +P+KE+H NK P
Sbjct: 242 LAEHPTNKNSVIAYDLSEDPTPLLELSAEEIAERLYVKQADLPEGASRIPLKEIHFNKSP 301
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
++ + + +R GID C + LR ++ + + +++ D + QLY
Sbjct: 302 MVATVKLLDDQSAQRLGIDKSTCEAHWQQLRAA-DITSKLQDVFSTQRFPPKHDPEQQLY 360
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
DGF D+ +M I PE LS + D RL L FRYRAR++P TL+E EKQ W
Sbjct: 361 DGFINSHDKHLMLAIRGAEPETLSHYSSQLKDPRLKALLFRYRARHYPQTLNELEKQQWQ 420
Query: 422 EHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
E LT ++EY + LS E + +++ L Y ++
Sbjct: 421 EWVYSRLTDETAGASIVLDEYF---ERLSAYTDDIEANQQIVDDLLAYGDAIL 470
>gi|92115139|ref|YP_575067.1| exonuclease I [Chromohalobacter salexigens DSM 3043]
gi|91798229|gb|ABE60368.1| Exodeoxyribonuclease I subunit C [Chromohalobacter salexigens DSM
3043]
Length = 495
Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats.
Identities = 194/486 (39%), Positives = 284/486 (58%), Gaps = 18/486 (3%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG D DRPAQFA +R D + + F+CKPADD+LP P+A ITG
Sbjct: 8 PTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A R G+ E EF+ RIH SVP TC +GYN +RFDD SR++FYRNF D Y W
Sbjct: 68 ITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFIDPYSREW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDL+DV+R +A PDGI+WP+R+DGA SF+L+DL ANGIEH AHDA ADV
Sbjct: 128 QNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAHDALADVR 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L L++ + +LFEYL R+K + +++DIQ P++HVS + ASR +AL+ P
Sbjct: 188 ATIELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRGCSALVVP 247
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+A HP + VI +LS D +++ Q+ +R+F S DEL +G +P+K +H+NK P
Sbjct: 248 LAEHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKVIHINKSP 307
Query: 302 ILMPIDYCKKEH----------FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS 351
++MP K R G+D C + L+ ++ + ++ + +
Sbjct: 308 VIMPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEVFAEGPGA 367
Query: 352 SSQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
D D LY GFF+ DR+ M R L+ + F D RL E+ FR RARN+P
Sbjct: 368 PPSDPDLMLYSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFRLRARNYPD 427
Query: 411 TLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
TLS +E+ W +R + + + + +++ L+ D ++ ++ L +++
Sbjct: 428 TLSSEEQAQWEAYRWARMNDAEVASLTLTGFAREIERLNQVPLDDAQRQ-VLEELVMHVE 486
Query: 466 WVIPKE 471
++P +
Sbjct: 487 AMMPPQ 492
>gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
Length = 482
Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats.
Identities = 186/476 (39%), Positives = 280/476 (58%), Gaps = 8/476 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ + +D+ET G D A DRP QFAG+R D ++ I + +CK A+D LP+P+A +T
Sbjct: 6 PSSYFWFDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLLT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A R+G+ EAEF I + S P TC +GYN +RFDD R FYRNF D Y
Sbjct: 66 GITPQDANREGLCEAEFMAEIEKELSQPGTCALGYNTLRFDDEVVRYGFYRNFIDPYARE 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W N SRWD++D++R YA PDGI+WP D+G S KL+ L ANG+ H AHDA +DV
Sbjct: 126 WQNKCSRWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKANGLAHEQAHDALSDV 185
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
Y T+A+ LIR+ +PKLF+Y R+K++L++ ID M P +H+SGMFG + A +A
Sbjct: 186 YGTIAIAKLIRDTQPKLFDYYAKMRHKSELQQFIDPYRMKPFLHISGMFGLDKKFAAFVA 245
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+A HP K+ +I +L D L ++ +R+F++ +EL L +P+K +HLN+ P
Sbjct: 246 PLAPHPSNKNGIIVYDLMEDATPLVTLTVEEIRQRVFSTTEELGELTRLPLKVIHLNRAP 305
Query: 302 ILMPIDYCKKEH-FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
+ P + K ER +D C NL++L+ L + ++ + +D D+ L
Sbjct: 306 AVAPATFLKAADVVERLALDGDVCRTNLSILKSTQELVAKLSKVFEQEERRIDKDPDTML 365
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GFF+ D+Q M+ I T E L + + F DRRLPE+F RY RN+P LSE+++++
Sbjct: 366 YSGGFFSREDKQRMEEIRSTPIEALGEIEMAFDDRRLPEMFMRYLGRNYPDQLSEQQREE 425
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
W E+R+ L + ++ + +L L+ + + K ++ L +Y Q + P
Sbjct: 426 WEEYRQTRLLNADGGGTIHMDAFFARLNELAQDEELTASKRLMLQDLSDYAQSIYP 481
>gi|126667153|ref|ZP_01738127.1| exonuclease I [Marinobacter sp. ELB17]
gi|126628309|gb|EAZ98932.1| exonuclease I [Marinobacter sp. ELB17]
Length = 507
Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats.
Identities = 205/480 (42%), Positives = 292/480 (60%), Gaps = 11/480 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T F +DYETFG D DRP QFAGVR D + IE V FC+PADDYLP PEA I
Sbjct: 26 LTPTFYWHDYETFGVDPLHDRPCQFAGVRTDSELNIIEEPLVIFCRPADDYLPAPEACLI 85
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+A ++G EAEF I+ FS P TC++GYN++RFDD +RN YRN D Y
Sbjct: 86 TGITPQQATQEGYPEAEFITMINSAFSQPGTCVVGYNSLRFDDEVTRNTLYRNLRDPYGR 145
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDL+DV+R Y P+GI+WP + DG+ SF+L+DLA ANG+EH AHDA +D
Sbjct: 146 EWQNGNSRWDLIDVVRLAYTLRPEGIEWPLKPDGSPSFRLEDLARANGLEHGQAHDAMSD 205
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V ATLAL LI+E++P+LFE+ ++K RK++D P+ HVSG + AS+ + AL+
Sbjct: 206 VTATLALARLIKERQPRLFEFARANKSKQAARKMLDTSTRKPVFHVSGKYPASQGSCALV 265
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
APVA H K+ VI +L + + Q+ +R+FT+ L +G+ P+K + LNK
Sbjct: 266 APVAEHASNKNQVIVYDLRENPDELINASVDQIRERVFTAQSALPEGVRRFPLKAIQLNK 325
Query: 300 CPILMPIDY---CKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQD 355
CP+L P E ++ +D ++ +L +LRQ + R A + + Y + D
Sbjct: 326 CPVLAPATMLAALSPERLQQLNLDGEQMRRHLAILRQAGPDFGQRVAAAFERDYDTKLTD 385
Query: 356 VDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D Q+Y GFF+ DR +DR L P+QL+ F+D+RL E+ FRYRARN+P TLS
Sbjct: 386 PDEQIYAGGFFSPSDRTQLDRALAITPQQLAESEFQFTDQRLAEMLFRYRARNYPDTLSG 445
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
++ + W + R++ LT+ + EY +LQ L + + + ++ L+ Y + + P
Sbjct: 446 EDMERWEQFREQRLTQPAKGWLSLAEYGAELQRLMAKPDVTQQQRHILEELHLYGEAISP 505
>gi|330981526|gb|EGH79629.1| exonuclease I [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 476
Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats.
Identities = 189/475 (39%), Positives = 273/475 (57%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H A DA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAPDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D + L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D L ++ D+ A+Y K +S+D +
Sbjct: 298 CPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKDDFVASEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+
Sbjct: 358 QLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQT 417
Query: 419 DWLEHRKKML------TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W + ++ L + + ++ S + ++ +Y +
Sbjct: 418 RWRDFCQQRLRSPEWGAPNTLHDFTTAWVECSL--SAAPEQLEVLRQWQDYANKL 470
>gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48]
gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48]
Length = 476
Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats.
Identities = 185/475 (38%), Positives = 282/475 (59%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ +DYET G + DRP Q AGVR D +IE+ +C+P+DD LP P A +
Sbjct: 1 MSSSIFWHDYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EAEF R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQQLASQGLCEAEFMTRVHTELARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L LIR+++PKL+++L+ R+K+++ + + + + PLVHVSG F A R+ ++
Sbjct: 180 VRATIGLARLIRDRQPKLYDWLFQLRSKHKVMEQVRL--LQPLVHVSGRFSAERNYIGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + L +RL+T +++ +G +PVP+K VH+N+
Sbjct: 238 LPLAWHPRNRNALIVCDLGQDSAPLLKESAQVLRQRLYTRREDMAEGELPVPLKLVHINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + + +R GID + L QQ RD+ I+ + + ++D +
Sbjct: 298 CPVVAPLSVIRAQDQQRLGIDMSTLQSHADHLANQQATWRDKLDIIFEEEAFAPTEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P QL + F D RLPEL FRYRARNF TL E+E
Sbjct: 358 QLYDGFIGDRDRRLCEQVRGVDPAQLGQGHWMFDDPRLPELLFRYRARNFADTLDEQELA 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L+ + + +++ Q S DE ++ A + +
Sbjct: 418 RWHGFCRERLSDPKWGAPNTLGDFEVACQ--SSLANADEAGRRVLEAWQAHAGQL 470
>gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1]
gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1]
Length = 477
Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats.
Identities = 189/475 (39%), Positives = 285/475 (60%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ +DYET G + DRP Q AGVR D +I+ +C+P+DD LP P A +
Sbjct: 1 MSSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ G+ EAEF +++ + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQLLAEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA PDGIQWP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDIVRTAYALRPDGIQWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + L +RL+T HDEL +G +PVP+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLHHETLPLLRESAEILRQRLYTRHDELAEGELPVPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP+L P+ + +R G+D L QQ +D+ + IY K + S+D +
Sbjct: 298 CPVLAPLSVLRPADQQRLGLDLTLLQSRGEQLANQQAQWQDKLEHIYGKDEFAPSEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY+GF D DR++ +++ P QLS + F D RLPEL FRYRARNFP TL+ +E Q
Sbjct: 358 QLYEGFIGDRDRRLCEQVRALEPAQLSRGHWMFDDPRLPELLFRYRARNFPETLTSEELQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L+ + + +++ Q DE ++ A + + +
Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEQARQQ--AWQGADEAGRRVLEAWQVHARQL 470
>gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
Length = 475
Score = 630 bits (1626), Expect = e-178, Method: Composition-based stats.
Identities = 189/476 (39%), Positives = 276/476 (57%), Gaps = 14/476 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I +C+P DD LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPGVLDEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI+WP + DG + KL+ L AN I+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDVVRTAYALRPEGIEWPQQ-DGRVTLKLERLTAANAIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL L+REK+P+L+++L+ R+K ++ + + + P+VH+SG F A R ++
Sbjct: 179 VRATIALARLVREKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAERHYLGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + D D+ L +RL+T D+L +G +PVP+K VH+N+
Sbjct: 237 LPLAWHPRNRNALIVCDLGLDPQGLLDTDAETLRQRLYTRRDDLAEGELPVPLKLVHVNR 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E ER +D L RD+ AIY + +++ D +
Sbjct: 297 CPVVAPLSVLRAEDRERLQLDMAVYQARALRLTDAQELWRDKLAAIYAQEEFAANADPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL +E+Q
Sbjct: 357 QLYDGFIGDRDRRLCEQVRMAEPSQLARAQWPFDDHRLPELLFRYRARNFPDTLDSEEQQ 416
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W ++ L+ + +E +K L ++ ++ EY +
Sbjct: 417 RWKLFCQQRLSNPEWGAPNTLEAFKQ--ARLELAVSATPFQQQVLGQWQEYADSLA 470
>gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25]
gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25]
Length = 475
Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats.
Identities = 193/476 (40%), Positives = 281/476 (59%), Gaps = 14/476 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I + +C+P+DD LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILPHPVACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI+WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDVVRTAYALRPEGIEWPQQ-DGRVTLKLERLTEANGIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL IREK+PKL+E+L+ R+K ++ + + + P+VH+SG F A R ++
Sbjct: 179 VRATIALARRIREKQPKLYEWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAERHYLGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L D + DLD+ L +RL+T + L +G +PVP+K VH+N+
Sbjct: 237 LPLAWHPRNRNALIVCDLGLDPQGLLDLDADTLRQRLYTRREALAEGELPVPLKLVHINR 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDS 358
CP++ P++ + E ER +D E L RD+ AIY + ++S D +
Sbjct: 297 CPVVAPLNVLRAEDRERLHLDMNIYQERALRLTDAQEVWRDKLAAIYAEEDFAASADPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL+ +E+Q
Sbjct: 357 QLYDGFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFRYRARNFPDTLNSEEQQ 416
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W ++ L+ + ++ + Q + + G++ EY +
Sbjct: 417 RWKLFCQQRLSSPEWGAPNTLDAFNQARQEFAV--SATSFQHGVLEQWQEYADTLA 470
>gi|319762823|ref|YP_004126760.1| exodeoxyribonuclease i [Alicycliphilus denitrificans BC]
gi|330824902|ref|YP_004388205.1| exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
gi|317117384|gb|ADU99872.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans BC]
gi|329310274|gb|AEB84689.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
Length = 478
Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats.
Identities = 190/478 (39%), Positives = 280/478 (58%), Gaps = 14/478 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG D DRPAQFA +R D Q +I + +C+PA+DYLPDP++ ITG
Sbjct: 2 HTFLWHDYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYCRPANDYLPDPQSCLITG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ L GV E +F+ RI ++P T +GYN IRFDD +R +F+RN D Y W
Sbjct: 62 ITPQLCLEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLDV+R YA PDGI+WP DG TSF+L++L ANG+ H AHDA +DV
Sbjct: 122 QNQCGRWDLLDVVRLAYALRPDGIEWPV-ADGKTSFRLENLTKANGLAHEAAHDALSDVR 180
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN----MTPLVHVSGMFGASRSNTA 238
AT+AL L+R + P+LF++ R K+++ + + P +HVSGMFGA R A
Sbjct: 181 ATIALARLVRARNPRLFDFALGLRKKDRVAAELRLPATAQTARPFLHVSGMFGAERGCLA 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
++ P+A HP K+ ++ +L+ D L + ++ +RLFT +L +G+ +P+K VHL
Sbjct: 241 VMWPLASHPTNKNELLAWDLAHDPAELATLSADEIRQRLFTRAADLPEGVTRLPLKSVHL 300
Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
NK P+++ ++ +RWG+D + + R+ ++ + ++ +P DV
Sbjct: 301 NKSPMVVGNVNTLTPAVAQRWGLDMAQAARHAEAARRLPDMSAIWAQVFQRPQ-EGPVDV 359
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF + DR+ ++R+ +PE+L+ F D RL EL +RYRARNFP TLS +E
Sbjct: 360 DQDLYGGFLGNEDRRRLNRLRALSPEELARERPGFDDERLAELVWRYRARNFPQTLSPEE 419
Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+ W HR ML + +L L GE DE E ++ A+Y+Y + + P
Sbjct: 420 HERWEAHRVAMLVEGEGGGLTFDALFERLDEL-GEQADDERTEAILGAIYDYAEGIAP 476
>gi|121594205|ref|YP_986101.1| exonuclease I [Acidovorax sp. JS42]
gi|120606285|gb|ABM42025.1| Exodeoxyribonuclease I subunit C [Acidovorax sp. JS42]
Length = 479
Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats.
Identities = 188/478 (39%), Positives = 277/478 (57%), Gaps = 14/478 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG + DRPAQFA VR D + +I + +C+PA+DYLPDP++ ITG
Sbjct: 2 HTFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ L G+ E EF+ RI ++P T +GYN IRFDD +R +F+RN D Y W
Sbjct: 62 ITPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLDV+R YA P+GI+WP DG SF+L+ L+ ANG+ H AHDA +DV
Sbjct: 122 QNQCGRWDLLDVVRLTYALRPEGIEWPEV-DGKPSFRLEHLSKANGLAHEAAHDALSDVR 180
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRSNTA 238
AT+AL LIR + P+LF++ K+++ + + P +HVSGMF A R A
Sbjct: 181 ATIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPAERGCLA 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
++ P+A HP K+ ++ +L+ D L + ++ RLFT +L +G+ +P+K VHL
Sbjct: 241 VMWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVHL 300
Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
NK P+++ ++ + +RWGID + + R +L + ++ +P DV
Sbjct: 301 NKSPMVVGNLNTLTPDMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQRP-AEGPLDV 359
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF + DR+ ++R+ E+L+ L F D RL EL +RYRARNFPHTLS +E
Sbjct: 360 DQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPEE 419
Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
++ W HR ML + +L +L E DE E ++ A+Y+Y + + P
Sbjct: 420 QERWEAHRVAMLVEGEGGGLTFDALFERLDTLGAE-ADDERTEAILGAVYDYAESIAP 476
>gi|224826521|ref|ZP_03699622.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
gi|224601122|gb|EEG07304.1| Exodeoxyribonuclease I [Lutiella nitroferrum 2002]
Length = 475
Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats.
Identities = 185/474 (39%), Positives = 271/474 (57%), Gaps = 10/474 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F +DYETFG DRPAQFAG+R D + +I + +C+P+ DYLP PEA +TG
Sbjct: 4 HTFFWHDYETFGTVPRQDRPAQFAGIRTDAELNEIGEPVMLYCRPSPDYLPSPEACLLTG 63
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ + GV E EF+ I + + P T +GYN++RFDD +R +F+RN D Y W
Sbjct: 64 ITPQLCQQHGVAEHEFAGVIERELATPGTIGVGYNSLRFDDEVTRFLFWRNLIDPYAREW 123
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLD++RA YA P+GI+WP D G SFKL+ L+ ANG+ H AHDA +DV
Sbjct: 124 QNQCGRWDLLDLVRATYALRPEGIEWPKHDTGLPSFKLEHLSAANGLAHEAAHDALSDVR 183
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LIR+++PKLFE+ R K+ +R + + PL+HVSGM+GA R N A++ P
Sbjct: 184 ATIALARLIRQRQPKLFEFYLGLRKKDAVRHQLSLHAPRPLLHVSGMYGAERGNLAVVWP 243
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+A HP K+ VI +L+ D + L + +RLF+ DEL G+ +PIK +H+NK P
Sbjct: 244 LAEHPSNKNEVIVWDLAYDPAELRGLGPDTIRQRLFSRSDELPDGVSRLPIKTIHINKSP 303
Query: 302 ILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
++ + E + WGID + + NL ++ +Y + T + DVD L
Sbjct: 304 FVVSNLRVLSDERADHWGIDLDAVTRHAETAQALPNLTSVWRKVYQRE-TGAPADVDENL 362
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y GF ++ DR+ + R+ + QL+ F D +L E FRYRARNFP +LS E++ W
Sbjct: 363 YGGFVSNNDRRELTRLRTLSAVQLAGERPAFDDAQLSEQLFRYRARNFPASLSAAEQERW 422
Query: 421 LEHRKKMLTRSRIE-----EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+ L I + ++ +L E D + L+ A+ +++ P
Sbjct: 423 QSWCRSKLIDGAIPGRHRAQCLEEIATL--EATADARGQTLLAAIRQFVDETAP 474
>gi|254786919|ref|YP_003074348.1| exonuclease I [Teredinibacter turnerae T7901]
gi|237686146|gb|ACR13410.1| exodeoxyribonuclease I [Teredinibacter turnerae T7901]
Length = 478
Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats.
Identities = 191/469 (40%), Positives = 285/469 (60%), Gaps = 8/469 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F +DYET+G + A+DRP+QFAGVR D I V +C+P +D P P+AV +TGI
Sbjct: 3 TFYWHDYETWGANPAVDRPSQFAGVRTDENLNIISDPLVIYCQPPEDIWPQPQAVMVTGI 62
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+PQ A G+ E EF RIH+ + P TC +GYN++RFDD +R +RN++D Y W
Sbjct: 63 SPQIARDKGLPEHEFIARIHREMAEPQTCTVGYNSLRFDDEVTRYALFRNYFDPYEREWR 122
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWD++D++R YA P+GI+WP + G SFKL++L ANGI H AHDA +DV A
Sbjct: 123 NGNSRWDIIDMVRLTYALRPEGIEWPLVE-GRPSFKLENLTQANGIAHQAAHDAFSDVEA 181
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+AL LI+EK+P+L++Y+ DY K +L +LID+Q+ PL+HVS F A +AL+AP+
Sbjct: 182 TIALAKLIKEKQPQLYQYVRDYSGKRKLAELIDVQSRKPLLHVSSRFSAEHGCSALVAPL 241
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A HP K++VI +LS D + D + ++ +RL+ + D+L +G+ +P+K VHLNKCPI
Sbjct: 242 AMHPVNKNAVIVFDLSVDPQPLIDASAEEVLQRLYVAADDLPEGVERIPLKLVHLNKCPI 301
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD 362
L + R ID ++ L Q +L+ + A++++ QD + QLY+
Sbjct: 302 LATPKLLDETAATRLKIDKSLSEQHWQKL-QCADLKSKLTAVFSQNDFPPRQDPEQQLYN 360
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GF D D++ ++ Q+ N F D RL + RY+ARNFP TLS++E +W E
Sbjct: 361 GFIGDADKRTSVQLRTATAAQIQQHNFVFEDARLSAMVLRYKARNFPETLSDEEAAEWSE 420
Query: 423 HRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
H + L E+++ + +L E++G GK L++AL +Y
Sbjct: 421 HVRLRLMDGGDGCLSYAEFQSTVANLRCEHEGSPGKLALLDALEDYAAE 469
>gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619]
gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619]
Length = 478
Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats.
Identities = 187/476 (39%), Positives = 284/476 (59%), Gaps = 13/476 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AGVR D + +I+ +C+P+DD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ G+ EAEF R+H ++P TC GYN +RFDD +R YRNF+D Y
Sbjct: 61 TGITPQQLASQGLGEAEFMTRVHAQLALPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+R YA P+GI WP + DG TS +L+ L+ ANGI+H +AH+A +D
Sbjct: 121 EWQGGNSRWDLIDVVRTAYALRPEGIVWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR K+PKL+E+L+ R+K+++ + I + + PLVH+SG F A+RS ++
Sbjct: 180 VRATIALARLIRHKQPKLYEWLFQLRSKHKVMEQIRL--LQPLVHISGRFSAARSYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + + + +RL+T +EL G +P+P+K V +N+
Sbjct: 238 LPLAWHPRNRNALIVCDLQQETLPLLRESAEVIRERLYTRREELSDGQLPIPLKLVQINR 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + +R GID L QQ + + + IY K S+D +
Sbjct: 298 CPVVAPLSVLRAADQQRLGIDLALVQSRAEELANQQNAWQHKLEHIYGKEDFVPSEDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY+GF D DR++ +++ P QL + F D R+PEL FRYRARNFP TL+ +E+Q
Sbjct: 358 QLYEGFLGDRDRRLCEQVRTLDPAQLGQGHWMFDDPRMPELLFRYRARNFPETLNSEERQ 417
Query: 419 DWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W ++ L+ + + +++ Q S DE +++A + + +
Sbjct: 418 RWYGFCQQRLSDPQWGAPNTLGDFEQARQ--SAWANADEAGRQVLDAWQAHARQLA 471
>gi|325983472|ref|YP_004295874.1| exodeoxyribonuclease I [Nitrosomonas sp. AL212]
gi|325532991|gb|ADZ27712.1| Exodeoxyribonuclease I [Nitrosomonas sp. AL212]
Length = 478
Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats.
Identities = 190/475 (40%), Positives = 272/475 (57%), Gaps = 7/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT F +DYETFG D DRPAQFAGVR D +I + +CKP D+LP PEA +
Sbjct: 1 MTMTFYWHDYETFGADPRRDRPAQFAGVRTDEALNEIGEPLMIYCKPTRDFLPHPEACLL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A G+ E EF RIH + P TC +GYN++RFDD +R YRNFYD Y
Sbjct: 61 TGITPQLADAQGLPEPEFIARIHAELAQPGTCGVGYNSLRFDDEVTRFTLYRNFYDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWD++D++R YA P GI WP +DG SFKL+DL ANGI H +AHDA +D
Sbjct: 121 EWQQGNSRWDIIDLVRMTYALRPAGITWPQHEDGQPSFKLEDLVAANGIWHESAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V T+AL L+R ++P+LF++L R+K + +D+ P++H + M+ A T+LI
Sbjct: 181 VRVTIALARLLRMQQPRLFDWLLQLRDKRKAAAQLDLITHNPVLHTTRMYPAKTGCTSLI 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ P +S++ +L D +F L++ LA LFT +D+L +G+ +P+K + +NK
Sbjct: 241 MPLIVEPGNNNSILVYDLRHDPEMFLPLNADDLAPLLFTRNDDLPEGMQRLPVKSIKINK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CP L P + E ER +D C + L + R Y SS DVD
Sbjct: 301 CPALAPRNTLDNETAERIALDLDVCYRHWQTLCAMPDFFQRVATAYTSRTFESSSDVDVA 360
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGF + D ++++I +P+QL + F D+RL EL FRYRARN+P TL E +
Sbjct: 361 LYDGFLDNADAALLEQIRAASPQQLGEMQFNFHDKRLSELLFRYRARNWPETLKPAEAER 420
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
W R + LT++ +E+ ++ L K D E +++A+ ++ ++
Sbjct: 421 WELLRLQRLTQADGGGSITFDEFSTQIALLREARKTDGQAEQILDAVEDWGNDLL 475
>gi|222110882|ref|YP_002553146.1| exonuclease i [Acidovorax ebreus TPSY]
gi|221730326|gb|ACM33146.1| Exodeoxyribonuclease I [Acidovorax ebreus TPSY]
Length = 479
Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats.
Identities = 186/478 (38%), Positives = 275/478 (57%), Gaps = 14/478 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG + DRPAQFA VR D + +I + +C+PA+DYLPDP++ ITG
Sbjct: 2 HTFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ L G+ E EF+ RI ++P T +GYN IRFDD +R +F+RN D Y W
Sbjct: 62 ITPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLDV+R YA P+GI+WP DG SF+L+ L+ ANG+ H AHDA +DV
Sbjct: 122 QNQCGRWDLLDVVRLTYALRPEGIEWPEV-DGKPSFRLEHLSQANGLAHDAAHDALSDVR 180
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ----NMTPLVHVSGMFGASRSNTA 238
AT+AL LIR + P+LF++ K+++ + + P +HVSGMF R A
Sbjct: 181 ATIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPTERGCLA 240
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
++ P+A HP K+ ++ +L+ D L + ++ RLFT +L +G+ +P+K VHL
Sbjct: 241 VMWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVHL 300
Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
NK P+++ ++ +RWGID + + R +L + ++ +P DV
Sbjct: 301 NKSPMVVGNLNTLTPAMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQRP-AEGPLDV 359
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF + DR+ ++R+ E+L+ L F D RL EL +RYRARNFPHTLS +E
Sbjct: 360 DQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSPEE 419
Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
++ W HR +L + +L +L E DE E ++ A+Y+Y + + P
Sbjct: 420 QERWEAHRMAVLVEGEGGGLTFDALFERLDTLGAE-ADDERTEAILGAVYDYAESIAP 476
>gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 477
Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats.
Identities = 185/475 (38%), Positives = 283/475 (59%), Gaps = 14/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F YDYET G + DRP Q AG+R D + +I+ +C+P+DD LP P A I
Sbjct: 1 MTSIF-WYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAI 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H + P TC GYN +RFDD +R YRNF+D Y
Sbjct: 60 TGITPTCLAEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAR 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++RA YA P GI WP +DG + KL+ L ANGI+H AHDA +D
Sbjct: 120 EWQGGNSRWDLIDLVRAAYALRPQGIVWPQ-EDGRVTLKLERLTAANGIDHGQAHDALSD 178
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIR+++P+L+++L+ R+K ++ I + + P+VH+SG F A+R+ ++
Sbjct: 179 VRATIALARLIRQQQPRLYDWLFQLRSKQKVMDQIRL--LQPMVHISGRFSAARNYIGVV 236
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNK 299
P+AWHP+ ++++I C+L D + D D+ L +RL+T +E L+G +PVP+K +H+NK
Sbjct: 237 LPLAWHPKNRNALIVCDLHLDPQGLLDHDAESLRQRLYTRREELLEGELPVPLKLIHINK 296
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLL-RQQTNLRDRFKAIYNKPYTSSSQDVDS 358
CP++ P+ + E +R +D + + L Q +D+ +AIY + ++S+D +
Sbjct: 297 CPVIAPLSVLRAEDQQRLELDMEGYQQRALRLTDAQKVWQDKLQAIYGREDFTASEDPEQ 356
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLY GF D DR++ +++ P QL+ PF D RLPEL FRYRARNFP TL+ +E
Sbjct: 357 QLYAGFLGDRDRRLCEQVRMADPLQLTQERWPFDDERLPELLFRYRARNFPDTLNPEEHG 416
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L+ + +E + ++ ++ ++ Y Q +
Sbjct: 417 RWRLFCQQRLSSPEWGAPNTLESFDAAMREWMAL--STPVQQEVLREWQGYSQQL 469
>gi|90022039|ref|YP_527866.1| exonuclease I [Saccharophagus degradans 2-40]
gi|89951639|gb|ABD81654.1| Exodeoxyribonuclease I subunit C [Saccharophagus degradans 2-40]
Length = 485
Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats.
Identities = 186/478 (38%), Positives = 287/478 (60%), Gaps = 16/478 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F +DYET+G + A+DRP+QFAGVR D I V +CKP +D P+PEA +
Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TG+TPQ+ L GV E EF ++IH+ + P TC +GYN+IRFDD +R YRN++D Y
Sbjct: 61 TGLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R YA P+GI+WP DG SF+L++L NGI H +AHDA +D
Sbjct: 121 EWRNGNSRWDIIDMVRLCYALRPEGIEWPVV-DGKPSFRLENLTKVNGIVHASAHDAYSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L L+REK+P L+E++ + R K + KL+D+ + P++H+S F + LI
Sbjct: 180 VEATIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLI 239
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
AP+A+HP K++VI NL+ D + DL + ++ R+FT+ +L +G+ +P+K +HLNK
Sbjct: 240 APLAYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNK 299
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
CPIL+ ++ R GID +C ++ + L Q+ ++ ++ + ++ S D +
Sbjct: 300 CPILLTPKILDEQAQARLGIDKAQCEKHWSQL-QRMDITEKLQQVFATNEFEGSLDPERM 358
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LYDGF D D+ +M + + +LS N FSD+RL ++ RY+ARNFP L++ E+ +
Sbjct: 359 LYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSERAE 418
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGD--------EGKEGLINALYEYL 464
W E + L + E +KL ++ E + K +I AL +Y+
Sbjct: 419 WREFVSQRLKDGGDGVLSLSELNDKLVNIRAELEQQQDQSPEQIAKKLDIIKALEQYV 476
>gi|145641395|ref|ZP_01796974.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
gi|145273938|gb|EDK13805.1| exodeoxyribonuclease I [Haemophilus influenzae 22.4-21]
Length = 430
Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats.
Identities = 199/430 (46%), Positives = 282/430 (65%), Gaps = 4/430 (0%)
Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
+F+CK +DYLP PEAV ITGI PQ+ G+ E EF+ +I FS PNTC++GYNNIR+
Sbjct: 1 MFYCKQTNDYLPAPEAVMITGIMPQECNEKGLSEPEFAAKILAEFSQPNTCVMGYNNIRY 60
Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
DD +R FYRNF D Y +SW NGNSRWDLLD++RA YA P+GI W DDG SF+L+
Sbjct: 61 DDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLE 120
Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
L ANGIEH NAHDA ADVYAT+A+ LI+EK+PKLF+Y ++ R K ++ KL+D M
Sbjct: 121 KLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGVMA 180
Query: 222 PLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSH 281
PLVHVSGM G R N +AP+AWHP ++++I C+L+GD+ + +L L+T
Sbjct: 181 PLVHVSGMLGNYRGNCTWVAPLAWHPTNQNALIVCDLTGDIDNLLAKSADELRANLYTKK 240
Query: 282 DELK--GLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
EL+ + PVP+K VH+NKCPIL P E R GID + CL+NL LR ++R+
Sbjct: 241 SELEERSVPPVPLKLVHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIRE 300
Query: 340 RFKAIYNKPYTSSSQD-VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE 398
+ I+N+ +S D V+++LY+GFF++ D+ M + E+L+ L F D+R+PE
Sbjct: 301 KVTDIFNEERQFASNDNVETELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPE 360
Query: 399 LFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLIN 458
L F YRAR+F TL+ E+ W ++R+ L +S + ++++ LQ L+ E+ + K L+
Sbjct: 361 LLFHYRARHFYKTLTRAEQIKWQKYRQNKLEKSAV-DFESSLQRLAEEHSDNPEKLSLLQ 419
Query: 459 ALYEYLQWVI 468
+YEY ++
Sbjct: 420 QVYEYGTKLL 429
>gi|120611894|ref|YP_971572.1| exonuclease I [Acidovorax citrulli AAC00-1]
gi|120590358|gb|ABM33798.1| Exodeoxyribonuclease I subunit C [Acidovorax citrulli AAC00-1]
Length = 478
Score = 622 bits (1606), Expect = e-176, Method: Composition-based stats.
Identities = 189/479 (39%), Positives = 276/479 (57%), Gaps = 14/479 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F +DYETFG D DRPAQFAG+R D +I + +C+PA DYLPDPE+ +TG
Sbjct: 2 HTFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMIYCRPAPDYLPDPESCLLTG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ L G+ E EF+ RI + P T +GYN IRFDD +R +F+RN D Y W
Sbjct: 62 ITPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLDV+R YA PDGI+WP ++DG+ S KL+ L+ ANG+ H AHDA +DV
Sbjct: 122 QNECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDVR 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN----MTPLVHVSGMFGASRSNTA 238
AT+AL LIRE++P+LFE+ R K+++ + + P +HVSGMF A R
Sbjct: 182 ATIALARLIRERQPRLFEFALGLRRKDRVAAELRLPATADTARPFLHVSGMFPADRGCLG 241
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
++ P+A HP ++ +I +L+ D LD+ ++ +RLFT +L +G+ +P+K VHL
Sbjct: 242 ILWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVHL 301
Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
NK P+++ ++ +RWGID +R + L R ++ + ++ +P + DV
Sbjct: 302 NKSPMVVGNVNTLTPAMAQRWGIDVERAAAHAELARALPDMSAIWAEVFARPR-EAPADV 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF + DR+ + R+ P++L+ F D RL EL +R+RARNFP TL E +
Sbjct: 361 DQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEAD 420
Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
++ W R L + +L +L DE E ++ ALYEY + + P
Sbjct: 421 RERWEALRVARLMEGEGGGLTFDALFARLDTLGE--TADERGEAILGALYEYAESIAPD 477
>gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166]
Length = 477
Score = 622 bits (1606), Expect = e-176, Method: Composition-based stats.
Identities = 189/475 (39%), Positives = 278/475 (58%), Gaps = 13/475 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT YD+ET G + DRP Q AG+R + E+I +C+P DD LP P A +
Sbjct: 1 MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F +H+ S P TC GYN++RFDD +R YRNFYD Y
Sbjct: 61 TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI WP DDG + KL+ L+ ANG+EH+NAHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPE-DDGRVTLKLERLSAANGLEHLNAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L LIRE++P+L+EYL++ R K+ + + + + + PLVHVSG F A+R +++
Sbjct: 180 VRATIGLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L + R + L +RL+T DEL +G +PVP+K VH+NK
Sbjct: 238 LPLAWHPRNRNALIVCDLQAEARPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358
CP+L P+ ++ +R +D C E LR+Q + +Y + D +
Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF + DR++ DRI AP +L+ F D RL EL FRYRARNFP LS +E+
Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAEERV 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L+ + + +++ +Q ++ L+ EY + +
Sbjct: 418 RWQRFCQQRLSGEIAGAPNTLAQFEADIQQFML--TATPAQQQLLQQWREYGRAL 470
>gi|332526171|ref|ZP_08402306.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
gi|332110011|gb|EGJ10639.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
Length = 492
Score = 622 bits (1606), Expect = e-176, Method: Composition-based stats.
Identities = 187/479 (39%), Positives = 273/479 (56%), Gaps = 14/479 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYETFGR DRPAQFAG+R D + +I + ++FC+P D LPDPE+ +TG
Sbjct: 17 TTFFWHDYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDTLPDPESCLLTG 76
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I PQ+AL +GV E EF+ RI + P T +GYN+IRFDD +R +F+RN D Y W
Sbjct: 77 ILPQQALAEGVAEREFAARIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYAREW 136
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NG RWDLLDV+R +A P+GI+WP +DG SFKL+ L ANG+ H AHDA +DV
Sbjct: 137 QNGCGRWDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALSDVR 196
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LIR+++P+L+++ R+K+ +R I + P +H+SGM+G A++ P
Sbjct: 197 ATIALARLIRQRQPRLWDFCLKLRHKDAVRTEIGVG--RPFLHLSGMYGVENGCMAVVWP 254
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL--KGLVPVPIKEVHLNKC 300
+A HP ++ +I +L+ D LD+ + +R++T +EL G +PIK VHLNK
Sbjct: 255 LAPHPTNRNELIVWDLAQDPAELASLDAETVRRRMYTKTEELAAAGETRLPIKTVHLNKS 314
Query: 301 PILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P+++ + ERWG+D +R L + L + ++ KP DVD
Sbjct: 315 PVVIGNLKTLGPAR-ERWGLDLERALVHAERAAALGRTLEPLWAQVFVKPAAGGPVDVDE 373
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LY GF D DR+ + R+ L++ F D RL EL FRYRARNF TL E++
Sbjct: 374 DLYGGFLGDEDRRQLQRLRGLDGAALASRRPAFDDPRLDELLFRYRARNFADTLDADERE 433
Query: 419 DWLEHRKKMLTRS-----RIEEYKNKLQSL--SGEYKGDEGKEGLINALYEYLQWVIPK 470
W HR L ++ Y ++ L + + DE + ++ ALY++ + V P
Sbjct: 434 RWAAHRHARLIAGAGGVLTLQAYAERIDELAEAAAERDDERAQSILEALYDWAEQVAPD 492
>gi|56460478|ref|YP_155759.1| exonuclease I [Idiomarina loihiensis L2TR]
gi|56179488|gb|AAV82210.1| Exonuclease I [Idiomarina loihiensis L2TR]
Length = 479
Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats.
Identities = 202/473 (42%), Positives = 281/473 (59%), Gaps = 8/473 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G + +DRPAQFAG+R D + I + +P D+LP+PEA ITG
Sbjct: 7 ETFYWHDYETWGANPLVDRPAQFAGLRTDTDFNVIGRPLTLYAQPTPDFLPNPEATLITG 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ A + GV EAEFS+ I F PNT IIGYNNIRFDD +R +FYRNFYD Y +SW
Sbjct: 67 ITPQLAAKQGVGEAEFSKAIANEFQKPNTTIIGYNNIRFDDEVTRLLFYRNFYDPYEYSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDL+DV+RA +A PDGI WP DG S KL+ L++AN IEH AHDA +DVY
Sbjct: 127 QNGNSRWDLIDVVRACFALRPDGINWPENSDGQPSLKLEHLSVANNIEHGQAHDAMSDVY 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L LI EK+PKL+++ Y R K +L L + Q PL HVSG +G + + I P
Sbjct: 187 ATIGLAKLISEKQPKLWQWAYSIRRKQKLLNLFNWQAPEPLAHVSGFYGTANRYLSAILP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVHLNKC 300
+ +HP+ +V+ +L F D +L + +TS EL+ GL I+ +HL +C
Sbjct: 247 LGFHPKQNSNVVAWDLRVPPMDFADKSVEELTELTYTSRRELEEQGLQKSGIQNIHLGRC 306
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P L PI E + +D N L++ ++ RD+ ++ + + DVD Q
Sbjct: 307 PFLAPIKTISAEAADSAALDTAALETNAKWLQENSDFRDKLMQVFEQTKEFAPRTDVDHQ 366
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
+YDGFF+ D++ M+ I + P QL+ L L F D+R+P L FRYRARN+P TLS+KE
Sbjct: 367 IYDGFFSPQDKKHMEIIRSSEPHQLAGLELDFQDKRMPALLFRYRARNYPSTLSDKELNK 426
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++ L E + KL+ L+ +++ D K L+ +LY+Y +
Sbjct: 427 WRLFCQQRLIEPPEGLLSAEGFALKLEDLANQHQEDAHKLRLLKSLYDYAASL 479
>gi|329895211|ref|ZP_08270875.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
gi|328922449|gb|EGG29791.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
Length = 480
Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats.
Identities = 195/478 (40%), Positives = 268/478 (56%), Gaps = 11/478 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M++ F +DYETFG A DRP QFAG+R D I V + +P DYLP+P AV +
Sbjct: 1 MSDTFYWHDYETFGASPAKDRPCQFAGLRTDANLNVIGDPLVVYSRPTPDYLPNPMAVLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL+ G+ E EF RIH S P TC +GYN++RFDD +R YRNF+D Y
Sbjct: 61 TGITPQEALQKGLSEREFITRIHAELSQPLTCGVGYNSLRFDDEVTRYTLYRNFFDPYGR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ +GNSRWDL+D++RA YA P+GI+WP DDG S KL+ L ANGIEH AHDA D
Sbjct: 121 EYQDGNSRWDLIDLVRASYALRPEGIEWPMSDDGFMSAKLERLTAANGIEHAGAHDALVD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ L LI+ K+PKLFEY R K + + + P++HVSGMFGA +N L+
Sbjct: 181 VKATIELAKLIKTKQPKLFEYYLGLRFKRAAQDQLALGQWRPILHVSGMFGARHANIGLV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
P HP K+ +I +LS D + +L +RL+T D+L G P +K +H+N+
Sbjct: 241 VPAIQHPTNKNEIITIDLSQSPEKLLDYSADELRQRLYTPADQLDGERPA-LKSIHINRA 299
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-----NLRDRFKAIYNKPYTSSSQD 355
P + P E R +D EN+ L+ L + +Y + D
Sbjct: 300 PFVAPAKMMTDEVAARANLDLVALRENMKALQALMKERGNELLALLRDVYAHKRVAEPTD 359
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
+ LY GF +D DR++ D+I +P+ L+ + PF DRRL EL FRYRARNFP TLS
Sbjct: 360 PEWDLYGGFLSDGDRRLCDQIKSASPQILARSSFPFEDRRLGELLFRYRARNFPDTLSLD 419
Query: 416 EKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
EK W E+ + +TR +E ++ + D L++AL Y ++
Sbjct: 420 EKMQWQEYCFERITREDQGLMHMERLFEEIAVIRQVSDDDPRAMQLMDALESYSDTLL 477
>gi|326316823|ref|YP_004234495.1| exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373659|gb|ADX45928.1| Exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 478
Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats.
Identities = 187/479 (39%), Positives = 275/479 (57%), Gaps = 14/479 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F +DYETFG D DRPAQFAG+R D +I + +C+PA DYLPDPE+ +TG
Sbjct: 2 HTFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMMYCRPAPDYLPDPESCLLTG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ L G+ E EF+ RI + P T +GYN IRFDD +R +F+RN D Y W
Sbjct: 62 ITPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N RWDLLDV+R YA PDGI+WP ++DG+ S KL+ L+ ANG+ H AHDA +DV
Sbjct: 122 QNECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDVR 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN----MTPLVHVSGMFGASRSNTA 238
AT+AL LIR+++PKLFE+ R K+++ + + P +H SGMF A R
Sbjct: 182 ATIALARLIRQRQPKLFEFALGLRRKDRVAAELRLPATADTARPFLHASGMFPADRGCLG 241
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHL 297
++ P+A HP ++ +I +L+ D LD+ ++ +RLFT +L +G+ +P+K VHL
Sbjct: 242 ILWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVHL 301
Query: 298 NKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
NK P+++ ++ +RWGID +R + + R ++ + ++ +P + DV
Sbjct: 302 NKSPMVVGNVNTLTPAMAQRWGIDMERAAAHAEIARALPDMSAIWAEVFARPKDA-PADV 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D LY GF + DR+ + R+ P++L+ F D RL EL +R+RARNFP TL E +
Sbjct: 361 DQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDEAD 420
Query: 417 KQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
++ W R L + +L +L DE E ++ ALYEY + + P
Sbjct: 421 RERWEALRVARLMEGEGGGLTFDALFARLDTLGE--TADERGEAILGALYEYAESIAPD 477
>gi|332993520|gb|AEF03575.1| exodeoxyribonuclease I [Alteromonas sp. SN2]
Length = 477
Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats.
Identities = 187/474 (39%), Positives = 272/474 (57%), Gaps = 9/474 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ YD+ETFG D P QFA +R D + I A+DYLP PEA +TG
Sbjct: 4 PSFLWYDFETFGTSGQKDLPCQFAAIRTDLDFNIIGKPINIMSAIANDYLPHPEACLVTG 63
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+ LRDG EA+F++RI+Q S PNTC +G+N+IRFDD +R +FYRNFYD Y W
Sbjct: 64 ITPQQTLRDGSNEADFAKRIYQEMSTPNTCSLGFNSIRFDDEVARFLFYRNFYDPYSREW 123
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWD++D+ RA YA PDGI WP+R+DG SFKL+ L N I H NAHDA +DV+
Sbjct: 124 RNGNSRWDIIDLARACYALRPDGINWPTREDGTPSFKLEHLTKENDISHENAHDALSDVH 183
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LI+EK+P+LFEY Y R+K+ + D+ + L+H+S AS+ I P
Sbjct: 184 ATIALAKLIKEKQPRLFEYAYSLRSKHNVANQFDLTKPSVLLHISAKLPASQGCCTWIMP 243
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD--ELKGLVPVPIKEVHLNKC 300
+A HP +++I +LS + + ++ +L+ ++ + +K +H+N+
Sbjct: 244 IAKHPTNSNAIIAVDLSKPIDSLLNDSPEEIKAKLYARYEPGSDANSLRPGLKLIHINRS 303
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + +++ R G+D CLEN +L Q+ +L + +Y QD+D L
Sbjct: 304 PFVTTAKAMTEDNAHRLGLDRDTCLENYRILAQERDLGMKLSNVYENDTDDKEQDIDHAL 363
Query: 361 YD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y GF + DR D++L ++PEQL L L L FRYRARNFP TL+ E
Sbjct: 364 YSGGFLSTEDRHWCDKVLASSPEQLGALAEETQHVGLRALLFRYRARNFPSTLTYDETLK 423
Query: 420 WLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W HR+ LT +E Y + L+ L+ E+ + K+ ++ AL++Y + +
Sbjct: 424 WQRHRQARLTDPTSSASITLEHYMSTLERLAHEHVDNPEKQAILRALFQYAENL 477
>gi|192360953|ref|YP_001983097.1| exonuclease I [Cellvibrio japonicus Ueda107]
gi|190687118|gb|ACE84796.1| exodeoxyribonuclease I [Cellvibrio japonicus Ueda107]
Length = 497
Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats.
Identities = 188/482 (39%), Positives = 270/482 (56%), Gaps = 18/482 (3%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+DYET+G A+DRP QFAGVR D + + +PA D LP PEA ITGI
Sbjct: 8 TLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+A GV EA+F IH+ + P TC +GYN+IRFDD +R YRNFYD Y W
Sbjct: 68 TPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYEREWR 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDL+DV+R A P+GI WP +DG FKL+ L N I H AHDA +DV+A
Sbjct: 128 NGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSDVHA 187
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ L++ ++PKL++Y + R+K LIDI PL+H+S F + N AL+ P+
Sbjct: 188 TIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAALVLPL 247
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPI 302
A+HP K+SVI NL+ D +L +L RLFT+ +L +G+ +P+KE+HLNK P+
Sbjct: 248 AYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHLNKTPM 307
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVD 357
L+ + R +D C ++L Q + L ++ +Y+ + D +
Sbjct: 308 LVTTAMVDETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYSAQDFTGRTDPE 367
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
QLY GFF+D D+++M R+ +P+ L+ F D RLPEL FRYRARNFP +L E+
Sbjct: 368 QQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPESLDPAEQ 427
Query: 418 QDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDE------GKEGLINALYEYLQ 465
Q W + LTR + +++ ++ +L K ++ L +Y
Sbjct: 428 QRWFDFCCGRLTRPDQGASLVLSDFRQRIHALLAGLDVQPPQPDPIKKRQILKQLQDYAD 487
Query: 466 WV 467
+
Sbjct: 488 SL 489
>gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1]
gi|300075708|gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum
seropedicae SmR1]
Length = 467
Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats.
Identities = 184/435 (42%), Positives = 255/435 (58%), Gaps = 4/435 (0%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+NH F+ +DYETFG DRPAQFA VR D + +I + + +CKPA DYLPDP +
Sbjct: 1 MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGITPQ L G+ E EF+ RI Q P T +GYN IRFDD +R +F+RN D Y
Sbjct: 61 ITGITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W NG RWDLLDV+R YA P GIQWP +DDG+ SFKL+ L+ ANG+ H AHDA +
Sbjct: 121 REWQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+AL LIR+ P+LF++ K++ I + P +H SGMF + AL
Sbjct: 181 DVRATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLAL 240
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+ HP K+ VI +L D LD+ + +RLF+ D+L +G+ +P+K +HLN
Sbjct: 241 MWPLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLN 300
Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
K P+++ + E ID + L + +L + +Y + + DVD
Sbjct: 301 KSPMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQRE-SEGPADVD 359
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF + DR+ ++++ +P+ L+T ++ F D RL E+ FRYRAR+FP TLS +E
Sbjct: 360 EDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEEA 419
Query: 418 QDWLEHRKKMLTRSR 432
Q W EHR R R
Sbjct: 420 QHWEEHRAAAPVRGR 434
>gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501]
gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501]
Length = 477
Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats.
Identities = 186/451 (41%), Positives = 271/451 (60%), Gaps = 11/451 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT YD+ET G + DRP Q AG+R + E+I +C+P DD LP P A +
Sbjct: 1 MTPSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP + G+ EA+F +H+ S P TC GYN++RFDD +R YRNFYD Y
Sbjct: 61 TGITPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+D++R YA P+GI WP DDG + KL+ L+ ANG+EH+NAHDA +D
Sbjct: 121 EWQGGNSRWDLIDLVRTAYALRPEGIGWPE-DDGRVTLKLERLSAANGLEHLNAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT++L LIRE++P+L+EYL++ R K+ + + + + + PLVHVSG F A+R +++
Sbjct: 180 VRATISLARLIRERQPRLYEYLFNLRRKHAVLEQVTL--LEPLVHVSGRFSAARHFLSVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHPR ++++I C+L ++R + L +RL+T DEL +G +PVP+K VH+NK
Sbjct: 238 LPLAWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINK 297
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPYTSSSQDVDS 358
CP+L P+ ++ +R +D C E LR+Q + +Y + D +
Sbjct: 298 CPVLAPLKVLREADIQRLELDLPACHERADALREQRHVWSPKLDEVYREEGFIGVDDPEQ 357
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
QLYDGF + DR++ DRI AP +L+ F D RL EL FRYRARNFP LS E+
Sbjct: 358 QLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSAVERV 417
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSL 443
W ++ L+ + + +++ +Q
Sbjct: 418 RWQRFCQQRLSGEIAGAPNTLAQFEADIQQF 448
>gi|90416366|ref|ZP_01224298.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
gi|90332091|gb|EAS47305.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
Length = 478
Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats.
Identities = 179/469 (38%), Positives = 269/469 (57%), Gaps = 7/469 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M N F +DYETFG + ++DRP+QFAG+R D I V +C+P D LP P+A +
Sbjct: 1 MDNTFYWHDYETFGINPSIDRPSQFAGLRTDFDLNPIGEPLVIYCQPQPDLLPAPQACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ AL++G+ E F IHQ S NTC +GYN+IRFDD +R YRNFYD Y+
Sbjct: 61 TGITPQHALKEGLAEPAFIEAIHQQMSRANTCSVGYNSIRFDDEVTRYTLYRNFYDPYQR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWD++D++R A P+GI+WP + G SF+L+DL ANG+ H AHDA +D
Sbjct: 121 EWKNGNSRWDIIDMLRLCRALRPEGIEWPDHEPGRPSFRLEDLTAANGLAHEAAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ L+++K+P+LF+Y R K Q+ ++D++ P H+SGM + AL+
Sbjct: 181 VTATIAMAKLVKDKQPRLFDYALQNRGKKQVAAMLDLKARKPFFHISGMLAKEQLYGALM 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + +I +LS D L+ Q+ R+FT+ +L +G +P+K +H+NK
Sbjct: 241 MPLAQHPTNSNGIICFDLSADPEALVSLNEHQIRDRVFTASADLPEGAERIPLKVIHINK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
P++ +R ID +RC N L +L D+ + ++ + D + Q
Sbjct: 301 APVVTTHKLVDTATAKRLDIDLERCERNWQRL-SSMDLSDKLQLVFREQKFPPKSDAEQQ 359
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
LY GF + D+ ++D + R S F+D+R +L F YRAR FP +LS +E+Q
Sbjct: 360 LYGGFLPNQDKGLLDDVRRATASDFSQQQFYFADQRYNQLLFSYRARYFPESLSAEEQQT 419
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
WLE + LT +++ + L L + + K G++ AL +
Sbjct: 420 WLESCRWRLTDEQSGYLTLQQNRRTLDQLLADTSLSDHKRGVLQALESW 468
>gi|254482823|ref|ZP_05096060.1| Exonuclease C-terminal domain family protein [marine gamma
proteobacterium HTCC2148]
gi|214036904|gb|EEB77574.1| Exonuclease C-terminal domain family protein [marine gamma
proteobacterium HTCC2148]
Length = 460
Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats.
Identities = 191/459 (41%), Positives = 273/459 (59%), Gaps = 13/459 (2%)
Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
QFAG+R D I V + +PA+D+LP P+A +TGITPQKAL +G+ EAEF R I
Sbjct: 1 MQFAGLRTDADLNPIGEPLVIYSRPANDFLPHPQACLVTGITPQKALAEGLPEAEFIRLI 60
Query: 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
H + P TC +GYN++RFDD SR YRNFYD Y W NGNSRWD++D++RA YA
Sbjct: 61 HAELAAPGTCGVGYNSLRFDDEVSRYTLYRNFYDPYGREWQNGNSRWDIIDMVRACYALR 120
Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
P+GI+WP R+DG SF+L+ L ANGI H AHDA +DV+AT+A+ LI+ K+P+L++Y+
Sbjct: 121 PEGIEWPLREDGQPSFRLEALTAANGIAHEAAHDALSDVHATIAMARLIKTKQPRLYDYV 180
Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDM 262
+R+K + L+D+ M P++HVSGMFGA R N LI P+A HP K+ VI +L D
Sbjct: 181 LKHRDKRSVSTLLDLDAMKPVLHVSGMFGAVRHNIGLIVPLAMHPTNKNEVICYDLMTDP 240
Query: 263 RVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321
+ + L+T DEL +G +K VH+NKCPIL+ E R GI
Sbjct: 241 AMLMQQSPEETRTLLYTRADELPEGTERPGLKSVHINKCPILVTAKMADPETAARLGISG 300
Query: 322 KRCLENLTLLRQ-----QTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFFADVDRQIMDR 375
++C +L LR+ + +AI++ D D LY GFF D+++MD+
Sbjct: 301 EQCRAHLAALREYRGRDSQGFVQKIQAIFSGRQFDEITDPDRMLYSGGFFGATDKRLMDQ 360
Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR--- 432
+ ++ E+L++ PF D RL E+ FRYRARN+P TLS +E W E+R + LT
Sbjct: 361 VRESSAEELASATFPFEDGRLTEMLFRYRARNYPQTLSGEELALWEEYRFQRLTEPDAGS 420
Query: 433 ---IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+EEY+ +Q+L + + L+ L +Y ++
Sbjct: 421 SICMEEYQELIQTLVTSGELTLPQCELMEQLLDYSDTLL 459
>gi|85711607|ref|ZP_01042664.1| Exonuclease I [Idiomarina baltica OS145]
gi|85694467|gb|EAQ32408.1| Exonuclease I [Idiomarina baltica OS145]
Length = 486
Score = 609 bits (1572), Expect = e-172, Method: Composition-based stats.
Identities = 201/475 (42%), Positives = 283/475 (59%), Gaps = 10/475 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F +DYET+G +DRPAQFAG+R ++ + + +P D+LPDPEAV ITG
Sbjct: 12 PTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLITG 71
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ AL GV EA F++ I Q S PNT IIGYNNIRFDD +R++ YRNFYD Y +W
Sbjct: 72 ITPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYDPYAHTW 131
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDL+DV+RA YA P+GI WP +DG + +L+ L AN I+H AHDA +DV
Sbjct: 132 QNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDAMSDVR 191
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L+ EK+PKL+++ +R+KN L LI+ Q + PLVHVSG++GA + + P
Sbjct: 192 ATIAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADNFFVSAVLP 251
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD--ELKGLVPVPIKEVHLNKC 300
+ +H + +++I +L + F D + QL LF S E G ++ LN+C
Sbjct: 252 IGFHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGATQITLNRC 311
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN---KPYTSSSQDVD 357
P L P+ E +R ID E L + ++ RDR AI++ + DVD
Sbjct: 312 PFLAPLATLTAEAQQRTQIDLATLRERTRWLAENSDFRDRIMAIFDSALEHGEQPPLDVD 371
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
+LYDGFF D+Q + I PEQL+ + L D RLPEL FRYRARN+P TL + E
Sbjct: 372 QRLYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYPATLDQSEL 431
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
Q W + ++ LT I E+ KL+ L+ +Y+ ++ + L+ +LY+Y Q +
Sbjct: 432 QRWQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSLYDYAQGL 486
>gi|87121491|ref|ZP_01077380.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
gi|86163334|gb|EAQ64610.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
Length = 457
Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats.
Identities = 175/455 (38%), Positives = 266/455 (58%), Gaps = 8/455 (1%)
Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRI 82
QFAG+R D ++ +I + +C+ A+D LP P+A +TGI+PQ A R+G E EF I
Sbjct: 1 MQFAGIRTDLEFNQIGEPIMIYCQLAEDVLPHPDACLLTGISPQDANREGYPETEFMAMI 60
Query: 83 HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS 142
+ F+ P TC +GYN+IRFDD R FYRNF D Y W N SRWD++D++R YA
Sbjct: 61 EKEFATPGTCALGYNSIRFDDEVVRFGFYRNFIDPYAREWQNACSRWDIIDLVRMCYAIR 120
Query: 143 PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
P+GI WP +DG S KL+DL AN I H AHDA +DVY T+ + LI++K+PKL++Y
Sbjct: 121 PEGINWPKNEDGQVSLKLEDLTKANDIAHEQAHDALSDVYGTIEMAKLIKQKQPKLYDYY 180
Query: 203 YDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDM 262
+ R K +L+K ID M P +HVSGMFGA ++ A +AP+A HP K+ VI +L D
Sbjct: 181 FKMREKGELQKFIDPYRMKPFLHVSGMFGAIKNYAAFVAPIAPHPTNKNGVILFDLMQDA 240
Query: 263 RVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKK-EHFERWGIDH 321
+ DL ++ R+F++ + L +P+K +H N+ P + P + K R +D
Sbjct: 241 QPLIDLSVDEIRHRVFSTKEALGDTPRLPLKTLHYNRSPAVAPATFLKDTSVVSRLNLDG 300
Query: 322 KRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYD-GFFADVDRQIMDRILRTA 380
+ C +NL +L+ L ++ ++ + + +D D LY GFF+ D+ M+ I +T
Sbjct: 301 EICRQNLAILKSYPELANKMSQVFMQSHEKIDKDPDVMLYSGGFFSREDKARMEEIRQTP 360
Query: 381 PEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR------IE 434
LS L+L F DRRLPE+ RY RN+P L+ ++Q+W E+R+ L ++
Sbjct: 361 LNALSELSLSFDDRRLPEMLMRYIGRNYPEQLTSTQRQEWEEYRQAKLLDPSAGASICMD 420
Query: 435 EYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+ N+L L+ E + + K+ ++ L +Y Q + P
Sbjct: 421 AFFNRLNELAQETELSKSKQIMLQDLADYAQSIYP 455
>gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
Length = 480
Score = 607 bits (1567), Expect = e-171, Method: Composition-based stats.
Identities = 197/476 (41%), Positives = 285/476 (59%), Gaps = 9/476 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ F+ YD ETFG D R AQFA VR DR+ + ++ F +PADD LP P A I
Sbjct: 1 MTDSFLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLPSPVATLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI PQ ALR+G+ EAE + RI + S P TC +GYN++RFDD Y R+ +RNF+D Y
Sbjct: 61 TGIAPQHALREGLSEAEATARIVEEMSRPGTCTLGYNSLRFDDEYVRHTLFRNFFDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDVMR +A P+GI+WP R+DGATSFKL+ LALAN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVMRLAHALRPEGIEWPKREDGATSFKLEHLALANNVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ L L+R+ +P+L++Y R K L+D M P++HVS + A+R A +
Sbjct: 181 VYATIGLARLLRQAQPRLWDYALRMREKRHAASLLDTFAMNPVLHVSQRYPAARMCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + VI +L GD+ + ++A RL+T +L G+ VP+KEVHLN+
Sbjct: 241 LPLAVHPDISNRVIVFDLDGDVDALLEQAPEEIADRLYTPVADLPPGVSRVPLKEVHLNR 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNK-PYTSSSQDVD 357
P+L+P + + F+R GID + L + LR L ++ + +Y + +DVD
Sbjct: 301 SPMLVPWGHLRAPDFQRLGIDPELALARVERLRAHGPELAEKARQVYARGARERGEEDVD 360
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF D DR++ ++ TAP L + F D RLPEL FRYRARN+P TL+ E+
Sbjct: 361 GALYSGFCGDGDRRLCVQVRATAPADLGSRAFEFRDPRLPELLFRYRARNWPETLTPDER 420
Query: 418 QDWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++R++ L+ E + ++ +L + GD + L++ L + + +
Sbjct: 421 GRWDDYRRRRLLADSGLSEYTFETFFAEIATLRATHAGDGQRLVLLDQLEAWGREL 476
>gi|114331862|ref|YP_748084.1| exonuclease I [Nitrosomonas eutropha C91]
gi|114308876|gb|ABI60119.1| Exodeoxyribonuclease I subunit C [Nitrosomonas eutropha C91]
Length = 486
Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats.
Identities = 182/477 (38%), Positives = 269/477 (56%), Gaps = 8/477 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ +DYET G + DRP QFAG+R D +I V +CKPA D LP PEA +T
Sbjct: 5 TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A G+ E EF IH + P TC +GYN +RFDD +R YRNFYD Y
Sbjct: 65 GITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYARE 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W +GNSRWD++D+ R +A P+GI WP +G SF+L+D+ ANG+ H +AHDA +DV
Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL L+R+++P+L+++L+ R+K + L+D+ TP++H S M+ + + T L+
Sbjct: 185 RATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVM 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+ +S++ +L D F L+ L +RLFT EL +G +P+K + LNKC
Sbjct: 245 PLLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKC 304
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P L P E +R G++ ++C ++ LL Q + R + Y+ D D L
Sbjct: 305 PALAPQKVLNDEIAKRIGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIFPENDADLAL 364
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGF D DR + + + PE+L L+ F D R EL FRYRARNFP TLS +EK W
Sbjct: 365 YDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSAQEKHRW 424
Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
H ++ L + +Y+ KL L + + ++ ++N L + + + +
Sbjct: 425 QVHCRRQLGEDAINGSLTLNKYRQKLIQLRTDCPQ-QAQQEILNELEAWGRALAQEN 480
>gi|53803521|ref|YP_114798.1| exonuclease I [Methylococcus capsulatus str. Bath]
gi|53757282|gb|AAU91573.1| exodeoxyribonuclease I [Methylococcus capsulatus str. Bath]
Length = 478
Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats.
Identities = 185/474 (39%), Positives = 269/474 (56%), Gaps = 9/474 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F YD ETFG D A DR AQFAG+R D ++ I +V +C+P+DD +P P+A +T
Sbjct: 4 APSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A GV E+ F IH+ F P TC++GYN +RFDD R+ FYRN YD Y
Sbjct: 64 GITPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWD++D+ R A PDGI+WP G+ FKL+ LA ANGI H +AHDA +DV
Sbjct: 124 WKGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+A LI E++P+LF++ + R K + +L+ + P++HVS F ASR A +
Sbjct: 184 RATVAFARLIAERQPRLFQFALESRAKGAVERLLALGAWQPVLHVSEKFSASRHCIACVL 243
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
P+ HPR VI +L+ D DL ++ +RLFT EL +P+K VH N+C
Sbjct: 244 PLCRHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGVHTNRC 303
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIYNKPY-TSSSQDVDS 358
P+++P+ + ER GID C L+ ++ + A + ++ D +
Sbjct: 304 PVVVPMSALRPADGERLGIDAVLCRRRARWLQDHAEDIIPKISAAFEVDASFEAASDPEL 363
Query: 359 QLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF D DR+ +D++ R P+QL+ F D R EL FR+RARNFP TL+ +E+
Sbjct: 364 MLYRGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNFPETLNAEER 423
Query: 418 QDWLEHRKKMLT----RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+ W R+ L + E+ +++ L + + D GK +++AL Y + +
Sbjct: 424 ERWTAFRRARLAGIGGGLSLAEFFSRIDRLRSQ-ESDAGKRAILDALEVYGRNL 476
>gi|30248680|ref|NP_840750.1| exonuclease I [Nitrosomonas europaea ATCC 19718]
gi|30180275|emb|CAD84582.1| exodeoxyribonuclease I [Nitrosomonas europaea ATCC 19718]
Length = 496
Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats.
Identities = 184/477 (38%), Positives = 265/477 (55%), Gaps = 8/477 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +DYET G DRP QFAG+R D +I V +C+PA D LP PEA +T
Sbjct: 5 NSTLYWHDYETSGATPRWDRPFQFAGLRTDEALNEIGDPLVIYCQPARDRLPHPEACLLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A G+ E EF IH + P TC +GYN +RFDD +R YRNFYD Y
Sbjct: 65 GITPQMAEARGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFTLYRNFYDPYARE 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W +GNSRWD++D+ R +A P+GI WP +G SF+L+D+ ANG+ H +AHDA +DV
Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPINGEGKPSFRLEDITTANGLVHDSAHDALSDV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL L+R ++P+L+++L+ R+K L+D++ P++H S M+ + T L+
Sbjct: 185 RATIALARLLRAQQPRLYDWLFRLRDKRAAGNLLDMKTHAPVLHTSRMYSSEYGCTTLVM 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+ +SV+ +L D F LD LA+RLFT +EL +GL +P+K V LNKC
Sbjct: 245 PLLPETGNANSVLVYDLRHDPAEFVLLDIDALAERLFTPKEELAEGLQRLPVKAVRLNKC 304
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P L P E R G++ ++C ++ LL Q + R K Y+ + D D L
Sbjct: 305 PALAPQKVLNDEVANRIGLNVEQCQQHWQLLLQHPDFMQRIKQAYSGNKVFAENDADLAL 364
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGF +D DR + + P +L+ L F D R EL FRYRARNFP TLS +E+ W
Sbjct: 365 YDGFASDHDRNLFPLVRDAEPGKLADLAGKFQDERYIELLFRYRARNFPDTLSVQEEHHW 424
Query: 421 LEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPKE 471
H ++ L + + EY KL L + + + ++N L + + + +
Sbjct: 425 QMHCRRQLGENAINGSLTLNEYHQKLLQLRTDCPQ-QAQLDILNELEAWGRVLAQEN 480
>gi|190575052|ref|YP_001972897.1| exonuclease I [Stenotrophomonas maltophilia K279a]
gi|190012974|emb|CAQ46606.1| putative exodeoxyribonuclease I [Stenotrophomonas maltophilia
K279a]
Length = 479
Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats.
Identities = 193/475 (40%), Positives = 292/475 (61%), Gaps = 8/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R +QFA +R D +I++ FF +PADD LP P A +
Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y
Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R + A PDGIQWP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ + L ++ +P+L++Y R+K + L+D+ M P++H+S + ASR A +
Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + VI +L G++ +L + +A+RL+ EL +G+ VP+KEVHLNK
Sbjct: 241 LPLAVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + + R G+D + LR L ++ + +YN+P ++ DVD+
Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420
Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++R++ L + +Y+ +L +L+ E D ++ L+ +L ++ Q +
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDTRRQALLQSLRDWGQHL 475
>gi|166711560|ref|ZP_02242767.1| exonuclease I [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 481
Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats.
Identities = 199/474 (41%), Positives = 282/474 (59%), Gaps = 10/474 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA ANG+ +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANGVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIVMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL++ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYSRAADLPEGERRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + FER G+D L L + L ++ + +Y +++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDRDAVLAKAARLHEMGPELAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++ W +R++ L R +E+Y ++ L + D K+ L++ L +
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 474
>gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
Length = 481
Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats.
Identities = 197/477 (41%), Positives = 283/477 (59%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE F+ +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVSEAEAFARISEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL+EY R+K L+D+ M P++H+S + A+R A +
Sbjct: 181 VYATIGMARRFQQHQPKLWEYALRLRDKRFAATLLDVIAMQPVLHISQRYPAARMCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSS--QDV 356
P L+ + ++ F+R GIDH L LR+ L ++ + +Y ++ D
Sbjct: 301 SPALVAWQHLREADFQRLGIDHDAVLAKAARLRELGPELAEKVRQVYGNERAAAPAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W +R++ L R ++++ ++ L + D K+ L++ L + +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLDQFHAQIADLRLAHPDDATKQALLDQLAAWGSDL 477
>gi|319944538|ref|ZP_08018809.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
gi|319742251|gb|EFV94667.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats.
Identities = 185/491 (37%), Positives = 266/491 (54%), Gaps = 25/491 (5%)
Query: 1 MTNH-FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+ F +DYETFGRD LDRPAQFAG+R D ++ + +CKPA DYLPDPEA
Sbjct: 1 MSETSFFWHDYETFGRDPRLDRPAQFAGIRTDLDLNEVGEPVMLYCKPAPDYLPDPEACL 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI PQ+ L G+ E F+ + T +GYN+IRFDD +R++ +R Y
Sbjct: 61 LTGILPQECLARGLPEYRFADAVLAELGASGTIGVGYNSIRFDDEVTRHLLWRTLRPPYD 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W NG SRWDLLDV+RA A P+GI+WP DDG SFKL+ L+ ANG+ H AHDA +
Sbjct: 121 REWRNGCSRWDLLDVVRATAALRPEGIEWPRHDDGRPSFKLEHLSAANGLAHAQAHDALS 180
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV AT+AL LIR ++P+L+ + R K + L +I + P +HVS M+GA R A+
Sbjct: 181 DVRATIALAALIRNRQPRLWNFCLALRQKQAV--LTEIGSDRPFIHVSAMYGAERGGMAV 238
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLN 298
+ P+A HP ++ +I +L D DLD+ Q+ RLF+ ++L +G+ +PI+ + +N
Sbjct: 239 VWPLAQHPTNRNELIVWDLIHDPAELADLDAEQIRLRLFSKTEDLPEGMTRLPIRSLAIN 298
Query: 299 KCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSS-QD 355
K PI++ + ERW ID + + R+ L R +Y +P D
Sbjct: 299 KSPIVIGNLKVLTPAVIERWHIDMETIARHTETARRLTPQLASRMDEVYQRPRPQGPAPD 358
Query: 356 VDSQLYDGFFADVD-----------RQIMDRILRTAPEQLSTLNLP-FSDRRLPELFFRY 403
VD LY GF + D + + S + +P F D RL E+ FRY
Sbjct: 359 VDGDLYGGFIGNDDRRRLDDWRERLDATASQAAASPDADHSHIQIPSFEDPRLEEMSFRY 418
Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYK-GDEGKEGLI 457
RAR FP LS +EKQ W+ H L + + + ++L L+ DE + L+
Sbjct: 419 RARQFPDMLSTEEKQRWVAHCHARLHQGAGNAMTLATFAHRLDELNQSLSPDDEHGQRLL 478
Query: 458 NALYEYLQWVI 468
ALY+Y + +
Sbjct: 479 EALYDYGEQLA 489
>gi|121607268|ref|YP_995075.1| exonuclease I [Verminephrobacter eiseniae EF01-2]
gi|121551908|gb|ABM56057.1| Exodeoxyribonuclease I subunit C [Verminephrobacter eiseniae
EF01-2]
Length = 481
Score = 592 bits (1528), Expect = e-167, Method: Composition-based stats.
Identities = 181/482 (37%), Positives = 268/482 (55%), Gaps = 15/482 (3%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F+ +DYETFG D DRPAQFA +R D + I + C+PA+DYLPDP + +T
Sbjct: 3 AHTFLWHDYETFGTDTRCDRPAQFAAIRTDAELHAIGEPLMLHCQPANDYLPDPASCLLT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ G+ E +F+ RI + P T +GYN +RFDD +R +F+RN D Y
Sbjct: 63 GITPQHCCAHGLPEHQFAARIEAELARPGTIGVGYNTLRFDDEITRFMFWRNLIDPYARE 122
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEHVNAHDAKAD 180
W N RWDLLDV+R YA PDGI WP +DG A SF+L+DL ANG+ H AHDA +D
Sbjct: 123 WKNQCGRWDLLDVVRMTYALRPDGIHWPRHEDGAAPSFRLEDLCRANGLLHEAAHDALSD 182
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI----QNMTPLVHVSGMFGASRSN 236
V AT+AL LIR+ LF++ K+++ + + P +HVSGMF A R
Sbjct: 183 VRATIALARLIRQHNRPLFDFALGLHKKDRVAAELRLSGGAGTARPFLHVSGMFPAERGC 242
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEV 295
A++ P+A HP K+ +I +L+ D L ++ R+FT D L +G+ +P+K +
Sbjct: 243 LAVMWPLAGHPVNKNELIAWDLAHDPAALATLGVDEMRLRMFTRTDALPEGVTRLPVKTI 302
Query: 296 HLNKCPILM-PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
HLN+ P+++ ++ RWGID + ++ R ++ + A++ +P +
Sbjct: 303 HLNRSPMVVGNVNTLTPALARRWGIDLAQAAQHAQAARALPDMGRVWAAVFARPSEPAP- 361
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
DVD LY GF D DR+++D + +A + F D RL ELF+RYRARNFP TL+
Sbjct: 362 DVDQDLYCGFVGDRDRRLLDDLRASAAGMNGKARVHFDDPRLVELFWRYRARNFPATLAP 421
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+E W H L + ++ ++ LS DE +G++ ALY+Y + + P
Sbjct: 422 EEAGRWQAHCAARLFHGAGGARTVGQFHARIDELSE--TADERGQGILGALYDYAEQIAP 479
Query: 470 KE 471
+
Sbjct: 480 EH 481
>gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100]
gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris]
Length = 481
Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats.
Identities = 193/477 (40%), Positives = 276/477 (57%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + A+R A +
Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + + +R G+D LR+ L ++ + +Y ++ D
Sbjct: 301 APALVAWQHLRSDDLQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPAELGALEARFRDPRLIELLFRYRARNWPQTLSPDE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
Q W +R++ L R +E++ ++ L + D K+ L++ L + +
Sbjct: 421 HQRWNAYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWGSDL 477
>gi|285018531|ref|YP_003376242.1| exodeoxyribonucleaseIprotein [Xanthomonas albilineans GPE PC73]
gi|283473749|emb|CBA16252.1| putative exodeoxyribonucleaseIprotein [Xanthomonas albilineans]
Length = 492
Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats.
Identities = 200/475 (42%), Positives = 283/475 (59%), Gaps = 8/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG D R AQFA VR D +IE FF +PADD LP P A I
Sbjct: 14 MPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLI 73
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+ALR+G+ EA+ RI + + P TC +GYN++RFDD + R+ +RNF+D Y
Sbjct: 74 TGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHDPYER 133
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLD++R ++A PDGI WP R+DGATSFKL+ LALANG+ +AH+A +D
Sbjct: 134 EWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSD 193
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + R +P+L+EY R+K L+D+ M P++HVS + ASR A +
Sbjct: 194 VYATIGMARHFRRCQPRLWEYALKLRDKRFCASLLDVTAMQPVLHVSMRYPASRLCAAPV 253
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR V+ +L GD+ ++A RL+T +L +G + +KEVHLNK
Sbjct: 254 LPLTRHPRIDSRVVVFDLEGDINTLLRCTPEEIADRLYTPQADLPEGEQRIALKEVHLNK 313
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ-TNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ + ++ FER GID + L +R+ L ++ + ++ + DVD+
Sbjct: 314 APALVAWAHLREAEFERLGIDPAQALAKAARMREAGPTLAEKVRRVFASERATMPADVDA 373
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF AD D++ M ++ TAP QL+ L F D RLPEL FRYRARN+P TLS E+
Sbjct: 374 SLYDGFLADTDKRAMAQVRATAPMQLAPLEHGFRDPRLPELLFRYRARNWPQTLSIAEQT 433
Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++R++ L+ E Y +L L + D K+ L++ L + Q +
Sbjct: 434 RWDDYRRRRLEVDNGLSELTFETYAAQLADLRLAHPEDATKQALLDQLAAWGQDL 488
>gi|289663122|ref|ZP_06484703.1| exonuclease I [Xanthomonas campestris pv. vasculorum NCPPB702]
Length = 481
Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats.
Identities = 198/477 (41%), Positives = 283/477 (59%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+G+ EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + F+R G+DH+ L LR+ L ++ + +Y +++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D+ ++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W +R++ L R +E+Y ++ L + D K+ L++ L + +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRLAHPDDANKQALLDQLAAWGSDL 477
>gi|289669559|ref|ZP_06490634.1| exonuclease I [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 481
Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats.
Identities = 198/477 (41%), Positives = 283/477 (59%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+G+ EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGITEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLANANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLSRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + F+R G+DH+ L LR+ L ++ + +Y +++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHEAVLAKAARLRELGPALAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D+ ++ ++ +AP +L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKHLLTQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W +R++ L R +E+Y ++ L + D K+ L++ L + +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVILEQYHAQIADLRLAHPDDANKQALLDQLAAWGSDL 477
>gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 502
Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats.
Identities = 197/474 (41%), Positives = 279/474 (58%), Gaps = 10/474 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 22 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 81
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T ITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 82 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 142 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 201
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 202 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 261
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 262 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 321
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + FER G+D L +R+ L ++ + +Y +++ D
Sbjct: 322 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 381
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 382 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 441
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++ W +R++ L R +E+Y ++ L + D K+ L++ L +
Sbjct: 442 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 495
>gi|88707066|ref|ZP_01104762.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
gi|88698716|gb|EAQ95839.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
Length = 482
Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats.
Identities = 196/479 (40%), Positives = 280/479 (58%), Gaps = 13/479 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F +DYETFG D A DRP+QFAG+R D I V + +P DY+P P+A IT
Sbjct: 4 SETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL +GVVEA+F I F P TC +GYN++RFDD +R YRN D Y
Sbjct: 64 GITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ +G SRWDL+DV+R YA P+G+ WP+RDDG SF+L+DL ANG+E AHDA DV
Sbjct: 124 YGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDALVDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL I++K+P+LF++L+ R K ++ L+D P++HVSGMFGA R+N LI
Sbjct: 184 KATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLD-PMAQPVLHVSGMFGARRANLGLIL 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A H + ++ VI +LS D + DL + +L +RL+TS+ +L +G V IK VH+N+C
Sbjct: 243 PLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHINRC 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-----LRDRFKAIYNKPYTSSSQD 355
P+L+P ER G+D C NL LR LRD+ +A+ D
Sbjct: 303 PVLLPEKMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAVSELSGREPETD 362
Query: 356 VDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D LY GF DR+ +DR+L PE L+T + F D RL E+ FRYRARN+P TL++
Sbjct: 363 PDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPETLND 422
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+E+ W E+R ++ +E+ ++ + + ++ L + ++
Sbjct: 423 EERARWEEYRFARISEGDGRSLNLEDLNGIIEERLIAAQITDRDRHVLEELQRWGDSLL 481
>gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004]
gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
8004]
Length = 481
Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats.
Identities = 193/477 (40%), Positives = 279/477 (58%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + A+R A +
Sbjct: 181 VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P++ HPR VI +L GD L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLSRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + + F+R G+D LR+ L ++ + +Y ++ D
Sbjct: 301 APALVAWQHLRSDDFQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L + F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLTQVRSSAPGELGAMEARFRDPRLIELLFRYRARNWPQTLSPHE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
Q W ++R++ L R +E++ ++ L + D K+ L++ L + +
Sbjct: 421 HQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWGSDL 477
>gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 481
Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats.
Identities = 198/474 (41%), Positives = 280/474 (59%), Gaps = 10/474 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + FER G+D L +R+ L ++ + +Y +++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++ W +R++ L R +E+Y ++ L + D K+ L++ L +
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 474
>gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 481
Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats.
Identities = 197/474 (41%), Positives = 279/474 (58%), Gaps = 10/474 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T ITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + FER G+D L +R+ L ++ + +Y +++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP +L L F D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
++ W +R++ L R +E+Y ++ L + D K+ L++ L +
Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 474
>gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306]
gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306]
Length = 481
Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats.
Identities = 200/477 (41%), Positives = 282/477 (59%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++HVS + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAAALLDVIAMQPVLHVSQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + FER G+DH + LR L ++ + +Y ++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W +R++ L + R +E+Y ++ L G + D K+ L++ L + +
Sbjct: 421 QERWNVYRRQRLLQDRGLGEVTLEQYHAQIADLRGAHPDDATKQALLDQLAAWGSDL 477
>gi|219870303|ref|YP_002474678.1| exonuclease I [Haemophilus parasuis SH0165]
gi|219690507|gb|ACL31730.1| exonuclease I [Haemophilus parasuis SH0165]
Length = 457
Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats.
Identities = 190/414 (45%), Positives = 264/414 (63%), Gaps = 5/414 (1%)
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGITPQ + G+ E EF+ RIH FS PNTC++GYNNIR+DD +R F+RNF+D Y
Sbjct: 1 MVTGITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPY 60
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+SW NGNSRWDLLDV+RA YA P+GI+W D+G SFKL++L ANGI H NAHDA
Sbjct: 61 EYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAM 120
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTA 238
ADVYAT+A+ LI++K+PKLF++ R K L ++ID+ MTPLVHVSGM G R NTA
Sbjct: 121 ADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTA 180
Query: 239 LIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
+ P+AWHP +++VI C+LSG++ + S L +RL+T EL+ GL VP+K VH
Sbjct: 181 WVVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKAELEAQGLYTVPLKLVH 240
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL-RDRFKAIYNKPYTSS-SQ 354
+NKCPIL P E+ R GID CLENL L+ Q NL R++ I+++ S
Sbjct: 241 INKCPILAPAKTLLPENATRLGIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSN 300
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
++++ LYDGFF D+ M + PE+L+ L FSD R+ L F YRAR++ TL+
Sbjct: 301 NIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPRIEPLLFHYRARHYAETLTR 360
Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
E+ W ++ + L ++ E ++ + LS +Y + K L+ L Y ++
Sbjct: 361 AEQVRWQKYCYQQL-EAKAEAFEQAVDLLSAQYHDNPDKIKLLTDLTAYAAQLM 413
>gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 481
Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats.
Identities = 197/477 (41%), Positives = 280/477 (58%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + F+R G+DH + LR L ++ + +Y ++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W +R++ L R +E+Y ++ L + D K+ L++ L + +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHSDDATKQALLDQLAAWGSDL 477
>gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
Length = 481
Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats.
Identities = 197/477 (41%), Positives = 280/477 (58%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + F+R G+DH + LR L ++ + +Y ++ D
Sbjct: 301 SPALVAWQHLRAADFQRLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAVAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W +R++ L R +E+Y ++ L + D K+ L++ L + +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHPDDATKQALLDQLAAWGSDL 477
>gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 481
Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats.
Identities = 198/477 (41%), Positives = 281/477 (58%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q IE FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A PDGI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +P+L++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPRLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L +A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + + FER G+DH + LR L ++ + +Y ++ D
Sbjct: 301 SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +AP++L L F D RL EL FRYRARN+P TLS +E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 417 KQDWLEHRKKMLTRSR------IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W +R++ L R +E+Y ++ L G + D K+ L++ L + +
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRGAHPEDATKQALLDQLAAWGSDL 477
>gi|325918073|ref|ZP_08180231.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
35937]
gi|325535696|gb|EGD07534.1| Exodeoxyribonuclease I subunit C [Xanthomonas vesicatoria ATCC
35937]
Length = 481
Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats.
Identities = 195/477 (40%), Positives = 281/477 (58%), Gaps = 10/477 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R AQFA VR D Q I+ FF +PADD LP P A +
Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIDEPISFFVQPADDLLPSPYATMV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ ALR+GV EAE RI + S P TC +GYN+IRFDD + R +RNFYD Y
Sbjct: 61 TGITPQHALREGVSEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+R ++A P+GI WP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRGGNSRWDLLDVLRLVHALRPEGITWPQREDGATSFKLEHLADANAVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ + ++ +PKL++Y R+K L+D+ M P++H+S + ASR A +
Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMEPVLHISQRYPASRLCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HPR VI +L GD V L ++A RL+ +L +G +P+KEVHLNK
Sbjct: 241 LPLTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPY--TSSSQDV 356
P L+ + ++ F+R G+D L LR+ L ++ + +Y ++ D
Sbjct: 301 SPALVAWHHLREPDFQRLGLDRDAVLAKAARLRELGPALAEKVRQVYGNERAAAAAVNDA 360
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ LYDGF A+ D++++ ++ +APE+L L D RL EL FRYRARN+P TLS E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPEELGALETRLRDPRLVELLFRYRARNWPQTLSFDE 420
Query: 417 KQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
++ W ++R+K L +++Y ++ L + D K+ L++ L + +
Sbjct: 421 QERWNQYRRKRLLEDHGLGEVTLDQYHAQIADLRLAHPDDATKQALLDQLAAWGSDL 477
>gi|9107140|gb|AAF84824.1|AE004021_1 exodeoxyribonuclease I [Xylella fastidiosa 9a5c]
Length = 494
Score = 580 bits (1497), Expect = e-163, Method: Composition-based stats.
Identities = 182/475 (38%), Positives = 273/475 (57%), Gaps = 9/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +F+ YD ETFG+D R AQFA VR D + IE F KPADD LP P+A I
Sbjct: 17 MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 76
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 77 TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 137 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 196
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 197 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 256
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A RL+T +L +G +P+KEVHLNK
Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 316
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ + + F R G+D LR +L ++ + +++ +++ D D+
Sbjct: 317 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFS-HTYNTANDADA 375
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+ + ++ + P+ L+T D RL EL FRYRARNFP TLS E+
Sbjct: 376 SLYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQT 435
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W +R+ LT +++Y ++ L + D K+ L++ L + +
Sbjct: 436 RWDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASWGSEL 490
>gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c]
Length = 478
Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats.
Identities = 182/475 (38%), Positives = 273/475 (57%), Gaps = 9/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +F+ YD ETFG+D R AQFA VR D + IE F KPADD LP P+A I
Sbjct: 1 MPPNFLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 61 TGITPQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 181 VYATISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A RL+T +L +G +P+KEVHLNK
Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ + + F R G+D LR +L ++ + +++ +++ D D+
Sbjct: 301 VPALIAWNNLRASDFTRLGLDADMLETKAAQLRACGPDLAEKVRHVFS-HTYNTANDADA 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+ + ++ + P+ L+T D RL EL FRYRARNFP TLS E+
Sbjct: 360 SLYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQT 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W +R+ LT +++Y ++ L + D K+ L++ L + +
Sbjct: 420 RWDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASWGSEL 474
>gi|194366373|ref|YP_002028983.1| exonuclease I [Stenotrophomonas maltophilia R551-3]
gi|194349177|gb|ACF52300.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia R551-3]
Length = 479
Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats.
Identities = 190/475 (40%), Positives = 288/475 (60%), Gaps = 8/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R +Q+A +R D +I++ FF +PADD LP P A +
Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+AL +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y
Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R + A P+GIQWP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ + L ++ +P+L++Y R+K + L+D+ M P++H+S + ASR A +
Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P++ HP + VI +L GD+ +L + +A+RL+ EL +G VP+KEV LNK
Sbjct: 241 LPLSMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + + R G+D LR L ++ + +YN+P ++ DVD+
Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVADVDA 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q
Sbjct: 361 SLYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDERQ 420
Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++R++ L + +Y+ +L +L+ E D ++ L+ +L ++ Q +
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSLRDWGQHL 475
>gi|257471605|ref|ZP_05635604.1| exonuclease I [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
Length = 505
Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats.
Identities = 194/463 (41%), Positives = 283/463 (61%), Gaps = 6/463 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 35 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLIN-----MCKKICFDSIFIKNLLDSGVVLLHLNRCP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
L+H +L +EYKN +Q L +Y + K L+ L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492
>gi|311086276|gb|ADP66358.1| exonuclease I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
Length = 505
Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats.
Identities = 194/463 (41%), Positives = 282/463 (60%), Gaps = 6/463 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 35 TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLIN-----MCKKICFDSIFIKNLLDSGVVLLHLNRCP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
L+H +L +EYKN +Q L +Y + K L+ L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 492
>gi|311087440|gb|ADP67520.1| exonuclease I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
Length = 505
Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats.
Identities = 193/463 (41%), Positives = 281/463 (60%), Gaps = 6/463 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 35 PPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLIN-----MCKKICFDSIFIKNLLDSGVVLLHLNRCP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GFF D++ + I T P L + F D RL LFFRYRARNF +TL + EK+ W
Sbjct: 390 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFFYTLDDNEKKIW 449
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
L+H +L +EYKN +Q L +Y + K L+ L ++
Sbjct: 450 LKHCMNVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLSDF 492
>gi|28056789|gb|AAO28661.1| exodeoxyribonuclease I [Xylella fastidiosa Temecula1]
Length = 494
Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats.
Identities = 182/475 (38%), Positives = 272/475 (57%), Gaps = 9/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 17 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 76
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 77 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 136
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 137 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 196
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 197 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 256
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 257 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 316
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G+D LR +L ++ + +++ +++ D D+
Sbjct: 317 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFS-HTYNTANDADA 375
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ ++P+ L T D RL EL FRYRARNFP TLS E+
Sbjct: 376 SLYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 435
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W +R++ LT ++Y ++ L + D K+ L++ L + +
Sbjct: 436 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 490
>gi|161484692|ref|NP_779012.2| exonuclease I [Xylella fastidiosa Temecula1]
gi|182681388|ref|YP_001829548.1| exonuclease I [Xylella fastidiosa M23]
gi|182631498|gb|ACB92274.1| Exodeoxyribonuclease I [Xylella fastidiosa M23]
gi|307579833|gb|ADN63802.1| exonuclease I [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 478
Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats.
Identities = 182/475 (38%), Positives = 272/475 (57%), Gaps = 9/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 1 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 61 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMHAVRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 181 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 241 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G+D LR +L ++ + +++ +++ D D+
Sbjct: 301 VPALIAWNHLRASDFTRLGMDPSMLETKAAQLRACGPDLAEKVRNVFS-HTYNTANDADA 359
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ ++P+ L T D RL EL FRYRARNFP TLS E+
Sbjct: 360 SLYDGFLTEEDRRLLPQLRASSPDTLVTFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 419
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W +R++ LT ++Y ++ L + D K+ L++ L + +
Sbjct: 420 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 474
>gi|71897974|ref|ZP_00680179.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
gi|71732218|gb|EAO34273.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
Length = 488
Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats.
Identities = 181/475 (38%), Positives = 271/475 (57%), Gaps = 9/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 11 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ EA I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 71 TGITPQHAQREGINEAAAFAHIAMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G+D LR +L ++ + +++ +++ D D+
Sbjct: 311 VPALIAWNHLRASDFTRLGLDPSMLETKAAQLRACGPDLAEKVRHVFS-HTYNTANDADA 369
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ + + L+T D RL EL FRYRARNFP TLS E+
Sbjct: 370 SLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 429
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W +R++ LT ++Y ++ L + D K+ L++ L + +
Sbjct: 430 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 484
>gi|71275767|ref|ZP_00652051.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
gi|71902145|ref|ZP_00684172.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
gi|170730127|ref|YP_001775560.1| exonuclease I [Xylella fastidiosa M12]
gi|71163345|gb|EAO13063.1| Exodeoxyribonuclease I [Xylella fastidiosa Dixon]
gi|71728093|gb|EAO30295.1| Exodeoxyribonuclease I [Xylella fastidiosa Ann-1]
gi|167964920|gb|ACA11930.1| Exodeoxyribonuclease I [Xylella fastidiosa M12]
Length = 488
Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats.
Identities = 179/475 (37%), Positives = 270/475 (56%), Gaps = 9/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F+ YD ETFG+D R AQFA VR D Q IE F KPADD LP P A I
Sbjct: 11 MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLI 70
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ A R+G+ E I + P+TC +GYN +RFDD + R +R+FYD Y
Sbjct: 71 TGITPQHAQREGISEVAAFAHITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYER 130
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R ++A P+GI WP+R+DGA SFKL+ LALAN AH+A +D
Sbjct: 131 EWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGTAHEALSD 190
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+++ R +P+L+ Y R+K L+DI ++ P++H+S + A++ A +
Sbjct: 191 VYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV 250
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+ HP + +I +L+GD+ L + +A L+T +L +G +P+KEVHLNK
Sbjct: 251 LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNK 310
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + F R G++ LR +L ++ + +++ +++ D D+
Sbjct: 311 VPALIAWNHLRASDFTRLGLNPAMLETKAAQLRACGPDLAEKVRHVFS-HTYNTANDADA 369
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + DR+++ ++ + + L+T D RL EL FRYRARNFP TLS E+
Sbjct: 370 SLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIELLFRYRARNFPETLSCDEQT 429
Query: 419 DWLEHRKKMLT------RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W +R++ LT ++Y ++ L + D K+ L++ L + +
Sbjct: 430 RWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSEL 484
>gi|254517159|ref|ZP_05129217.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
gi|219674664|gb|EED31032.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
Length = 482
Score = 570 bits (1471), Expect = e-160, Method: Composition-based stats.
Identities = 187/479 (39%), Positives = 272/479 (56%), Gaps = 13/479 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +DYETFG D DRPAQFAG+R D I V + KP DY+P P+A IT
Sbjct: 4 SETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLIT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ AL GV EA+F + I F TC +GYN++RFDD +R YRN D Y
Sbjct: 64 GITPQAALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ +G SRWDL+D++R YA P+G+ WP RDDG SF+L+DL ANG+ AHDA DV
Sbjct: 124 YGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALVDV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL L++E++P+LF++LY R K ++ L++ + P++HVSGMFGA R+N LI
Sbjct: 184 QATIALARLLKERQPRLFQWLYQQRFKQAVKPLLEPMS-QPVLHVSGMFGAQRANLGLIL 242
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+A H + ++ V+ +LS D + DL + +L + LFT++ +L +G +K VH+N+C
Sbjct: 243 PLAAHHQNRNEVMCADLSIDADLLTDLPAAELHRLLFTANADLAEGEQRPGLKSVHINRC 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-----LRDRFKAIYNKPYTSSSQD 355
P+L+P +R +D + C NL LR LRD+ +++ + D
Sbjct: 303 PVLLPAKMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSVSELSTRAPETD 362
Query: 356 VDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D LY GF DR+ +DRIL +PE L+ + F D RL E+ FRYRARN+P TLS
Sbjct: 363 PDRMLYSGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYPQTLSA 422
Query: 415 KEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+E+ W E R ++ +E ++ + E ++ L + ++
Sbjct: 423 EEQLRWEEFRFNRISEGDGRSLTLEGLNELIEERLASPQLCERDRQVLEELQRWGDSLL 481
>gi|119505890|ref|ZP_01627954.1| Exonuclease [marine gamma proteobacterium HTCC2080]
gi|119458271|gb|EAW39382.1| Exonuclease [marine gamma proteobacterium HTCC2080]
Length = 483
Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats.
Identities = 183/475 (38%), Positives = 266/475 (56%), Gaps = 10/475 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F +DYET G +V DRP QFAGVR D+ + I V +C+P+ D L P A+ +T
Sbjct: 4 SESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P KAL +G E F +I + F VP TC +GYN++RFDD +R YRNF+ Y
Sbjct: 64 GISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ SRWDL+DV RAIYA PDGI WP R+DG SF+L+DL ANGI+H NAHDA ADV
Sbjct: 124 FGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALADV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL L+ + +P LF+ LY R K + L++ + P++HVSG FGA R N A++
Sbjct: 184 LATIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLAIVL 243
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKC 300
P+A HP K+ VI +L F D S + + LFT + G+ P+K + +N+
Sbjct: 244 PLAVHPTNKNGVICADLGEAPA-FLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQINRA 302
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR-----FKAIYNKPYTSSSQD 355
P+++P + E +R +D + +L R + + + IY + D
Sbjct: 303 PVVLPTTWVSGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAPRSD 362
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D+QLY+GF D +++ I + P+ L++ F DRRLPE+FFRYRARNFP +L
Sbjct: 363 PDTQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFPESLDPD 422
Query: 416 EKQDWLEHRKKMLTRSRIEE---YKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
EK W EH ++ LT + + +L + ++ L +Y + +
Sbjct: 423 EKARWREHCRETLTGKAGPDWEGFSKQLNEERAREGLSVMQIAALDDLEQYTREL 477
>gi|254524666|ref|ZP_05136721.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
gi|219722257|gb|EED40782.1| exodeoxyribonuclease I [Stenotrophomonas sp. SKA14]
Length = 479
Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats.
Identities = 195/475 (41%), Positives = 295/475 (62%), Gaps = 8/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + F+ YD ETFG+D R +Q+A +R D +IE+ FF +PADD LP P A +
Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIETPVSFFVRPADDLLPSPMATLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQ+A+ +G+ EAE RI++ S P TC +GYN +RFDD + R +RNF+D Y
Sbjct: 61 TGITPQQAMAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFIRYGLFRNFHDPYER 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W NGNSRWDLLD++R + A PDGIQWP R+DGATSFKL+ LA AN + +AH+A +D
Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+ + L ++ +P+L+EY R+K + L+DI + P++HVS + ASR A +
Sbjct: 181 VRATIGMARLFKQSQPRLWEYALKLRDKRFVGGLLDIAALKPVLHVSMRYPASRLCAAPV 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+A HP + VI +L GD+ +L + +A+RL+ EL +G+ VP+KEVH+NK
Sbjct: 241 LPLAVHPTINNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHMNK 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDS 358
P L+ ++ + + ER G+D + LR L ++ + +YN+P T+++ DVD+
Sbjct: 301 VPALIAWNHLRADDHERLGLDVAAIEAKVERLRPFAAQLAEKARQVYNQPRTATAADVDA 360
Query: 359 QLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
LYDGF + D+ ++ TAPEQL+ L F D RLPEL FRYRARN P +L+ E+Q
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPGSLAPAERQ 420
Query: 419 DWLEHRKKM------LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W ++R++ L + +Y+ +L +L+ + D ++ L+ +L ++ Q +
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAADAPDDARRQALLQSLRDWGQHL 475
>gi|297183623|gb|ADI19749.1| hypothetical protein [uncultured gamma proteobacterium EB000_37F04]
Length = 480
Score = 560 bits (1445), Expect = e-157, Method: Composition-based stats.
Identities = 195/474 (41%), Positives = 263/474 (55%), Gaps = 9/474 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +DYET G D DRP QFAG+R D + + + +P +D LP P AV +T
Sbjct: 4 SESLYWHDYETSGADPTQDRPWQFAGIRTDAELNIVGKPLTLYAQPTEDRLPHPAAVRVT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ+A GV EA F RI + PNTC GYN+IRFDD +R +RN D Y
Sbjct: 64 GITPQEAYEKGVTEATFISRILAELAKPNTCTAGYNSIRFDDEVTRFTLWRNLRDPYARE 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDV+RA +A SP+G++WP RDDG TSF+L+DL ANGIEH AHDA ADV
Sbjct: 124 WQNGNSRWDLLDVVRAFWALSPNGLEWPQRDDGLTSFRLEDLTAANGIEHGAAHDALADV 183
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ + +++ +LF LY R+K + LIDI + P+V+VSG+FGA+R N ALI
Sbjct: 184 IATIEMAKRLKQSDARLFTTLYANRSKRAVSALIDIPRLKPIVYVSGIFGAARHNLALIV 243
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDE-LKGLVPVPIKEVHLNKC 300
P+AWHP K VI +L+G + D +L + LF KG V P+ V LN+
Sbjct: 244 PLAWHPDNKSEVICADLAGS-TEYLDQPVAELRESLFAPASARSKGAVRPPLTAVRLNRA 302
Query: 301 PILMPIDYCKKEHFERWGIDHK-----RCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQD 355
P+L+P D+ E ER G+D + RF+ ++ D
Sbjct: 303 PVLLPADWLAGEAAERLGLDGDHHRAHLAALRAARAANEAAFVARFQELWRDRAFPPRTD 362
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
D LYDGF D DR + +IL+ P L+T + PFSD RLPEL FRYRARNFP +LS
Sbjct: 363 PDQMLYDGFINDADRALCQQILQQEPATLATQSWPFSDPRLPELLFRYRARNFPDSLSAG 422
Query: 416 EKQDWLEHRKKMLTRSRIEE--YKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E + W EH + + + L + ++AL ++++ +
Sbjct: 423 EGEQWREHCQLQRKEGTFNQATFAQALVEERARADITPATKRALDALEQWVRDL 476
>gi|161485723|ref|NP_660867.3| exonuclease I [Buchnera aphidicola str. Sg (Schizaphis graminum)]
gi|25090272|sp|Q8K923|EX1_BUCAP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|21623449|gb|AAM68078.1| exodeoxyribonuclease I [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 482
Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats.
Identities = 201/458 (43%), Positives = 278/458 (60%), Gaps = 6/458 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F+ YDYETFG +LD+PAQF+ +R D+ + +E + F+C P+DDYLPDP ++ ITGI
Sbjct: 11 NFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSILITGI 70
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TP+ + G E +FS++IH PNTCIIGYNNI FDD +RNIFYRNF D Y WSW
Sbjct: 71 TPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLDPYEWSWK 130
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N NSRWDLL+V+RA YA P GIQWP + G FKL DL N I H NAHDA +DVYA
Sbjct: 131 NNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATSDVYA 190
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ L LI+ K+PKLF++ + YR KN+L +LIDI+ TP+++VS FGA R N + I P+
Sbjct: 191 TIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSSYFGALRQNMSCILPL 250
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
+W K+ +I +L D+ K + S+ +K L + I V+LN+CPIL
Sbjct: 251 SWDLHNKNILISIDLFKDIDKLI-----VFCKTVSISNISIKDLFDLGIVLVYLNRCPIL 305
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS-SSQDVDSQLYD 362
PI +KE R + + L+++ L D K + K + +S +VD Q+YD
Sbjct: 306 APIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLLKKNENKNSLNVDLQIYD 365
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
FF D+ ++ +I T L + L F D RL ELFFRY+ARNF + L EK++W+
Sbjct: 366 SFFNFHDKNLIKKISLTKSSDLKKMKLDFKDPRLKELFFRYKARNFFNILKNDEKKEWIN 425
Query: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
+ K L + Y +K++SL Y D K L++ L
Sbjct: 426 YCLKTLNSFFLTGYIDKIESLLKIYSYDVKKNNLLSDL 463
>gi|302339540|ref|YP_003804746.1| exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
gi|301636725|gb|ADK82152.1| Exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
Length = 484
Score = 557 bits (1437), Expect = e-156, Method: Composition-based stats.
Identities = 172/475 (36%), Positives = 258/475 (54%), Gaps = 8/475 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YD ETFG LDR AQFAG+R D ++ V +CK DY+PDP+A I
Sbjct: 1 MARSIYWYDLETFGTHPRLDRIAQFAGLRTDEALNELGEPLVLYCKITQDYVPDPKACLI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP++ LR G+ E F RI++ F P +C+ G+N+I FDD + R YRN D +R
Sbjct: 61 TGITPEETLRKGLSERRFIERINEEFMQPGSCVAGFNSIAFDDEFIRATLYRNLMDPFRR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDLLDV+RA P GI WP ++G +F+L+ L AN + H NAHDA +D
Sbjct: 121 EWAGGNSRWDLLDVLRAARDLRPQGITWPEGENGRPTFRLEKLTEANALPHQNAHDALSD 180
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ L+REK+PK+F YLY R K+ R+LID+ P +H S M T+++
Sbjct: 181 VRATIAMARLLREKQPKIFSYLYRGRIKDHARQLIDLHKRRPFLHTSAMLSNEYGYTSIL 240
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNK 299
APVA HP +++++ +L D + +L + +F +EL + + +H+N+
Sbjct: 241 APVAPHPANQNAILCFDLRQDPEPLIERSVDELRRLIFAPSEELSLEESRIRLIPIHINR 300
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
P+L P+ + +R G+D C + L + + L + ++ + +D + +
Sbjct: 301 SPVLAPLSTLDPDTAKRLGLDVTLCGKRAAKLAEASLLTQKIMEVFRRDEAEIRRDPELE 360
Query: 360 LYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQ 418
+Y GFF+D DRQ M+R +PE + F DRRLPEL +R+ RN L E E++
Sbjct: 361 IYSGGFFSDADRQRMERFRELSPEAMLKRRGDFYDRRLPELAWRFVCRNHSEILDENERK 420
Query: 419 DWLEHRKKMLT--RSRIEE----YKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
W L R+ +K K++ LSG+ G + +I L E+ +
Sbjct: 421 KWKSFCAGRLLFPPERLINDFAFFKRKVKELSGDTNLPAGDKKIIKKLAEWATII 475
>gi|84387297|ref|ZP_00990317.1| exonuclease I [Vibrio splendidus 12B01]
gi|84377746|gb|EAP94609.1| exonuclease I [Vibrio splendidus 12B01]
Length = 351
Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats.
Identities = 177/345 (51%), Positives = 233/345 (67%), Gaps = 1/345 (0%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +DYET+G A DRP+QFAGVR D+ + I V +C+P DYLP PEA IT
Sbjct: 7 PTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITR 66
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQKA G+ E EF +IH + PNT +GYN+IRFDD +R YRNF D Y WSW
Sbjct: 67 ITPQKAASQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSW 126
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGNSRWDLLDVMRA++A PDGI WP ++G SFKL+ L++ANGIEH NAHDA ADV
Sbjct: 127 QNGNSRWDLLDVMRAVHALRPDGINWPPNEEGYPSFKLEHLSVANGIEHENAHDAMADVI 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L ++ +PK+F+YLY+ R+K +L L+DI NMTPL+HVSGMFG + T+ I P
Sbjct: 187 ATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSWIVP 246
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP +++VI +L+ D +LD+ +L RL+T EL + +PVPIK V LNKCP
Sbjct: 247 MAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCP 306
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346
IL P E+ E GID ++CL+NL LLR+ +R++ +Y+
Sbjct: 307 ILAPAKTLTAENAETIGIDRQQCLKNLALLREHPEIREKLIGLYS 351
>gi|269468419|gb|EEZ80084.1| exonuclease I [uncultured SUP05 cluster bacterium]
Length = 471
Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats.
Identities = 174/474 (36%), Positives = 268/474 (56%), Gaps = 16/474 (3%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F YDYETFG DR +QFAG+R D ++ +F+CKP D LP PEA +TG
Sbjct: 2 KTFYWYDYETFGISPKTDRISQFAGIRTDENLNILDEH-MFYCKPTHDCLPAPEACAVTG 60
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I+PQ + GV+E EF ++I+ F+ PNTCI+GYN+IRFDD ++R YRNF D Y W W
Sbjct: 61 ISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLYRNFIDPYAWHW 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+GN+RWD+LDV+R YA D ++W ++G FKL L+LANGIEH NAHDA ADV
Sbjct: 121 KDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIEHANAHDALADV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+ + +I+E +P+LF+Y + R K + I + P++H SGM+ A+ S T L
Sbjct: 181 RATIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMYPATLSCTRLAV 238
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
+A+HP Y D I NL D + +LD +L +FT EL G+ + IK++ NK
Sbjct: 239 ALAYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKRLEIKDLIFNKS 298
Query: 301 PILMPIDY-CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVD 357
P+ +P Y + E+ ID ++ L ++ + ++ N + + DVD
Sbjct: 299 PMFVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRNDKERAPTVDVD 358
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LYDGF + D++I +++ R + ++L + F D++L L ++ARN+P++L+E E
Sbjct: 359 QALYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKARNYPNSLTEDEA 418
Query: 418 QDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
+DW E + + +++Y ++ + ++ KE L L Y +
Sbjct: 419 EDWFETVQGRIQAGENGYTSLDDYYQRITLMQKQH---PEKETLWKQLESYAES 469
>gi|320086500|emb|CBY96271.1| exonuclease I, 3'-> 5' specific [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 333
Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats.
Identities = 183/318 (57%), Positives = 234/318 (73%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L V VP+K VH+NKCP+
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCPV 309
Query: 303 LMPIDYCKKEHFERWGID 320
L + + E +R GI+
Sbjct: 310 LAQANTLRPEDADRLGIN 327
>gi|71892235|ref|YP_277968.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|71796341|gb|AAZ41092.1| exonuclease I [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 500
Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats.
Identities = 207/487 (42%), Positives = 313/487 (64%), Gaps = 18/487 (3%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F IYDYETFG + ALDRPAQFAG+R + + IE ++FFC+ ++DYLPDP++V ITG
Sbjct: 10 PSFFIYDYETFGINPALDRPAQFAGIRTNNTLKPIEKEKIFFCRLSNDYLPDPQSVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I PQ LR G++E+EF+RRIHQ F +P TCI+GYNNI FDD +SRNIFYRNF+D Y W++
Sbjct: 70 IAPQDTLRHGLIESEFARRIHQLFCIPKTCILGYNNIHFDDEFSRNIFYRNFHDPYLWAY 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
GNSRWDLL V+RA Y+ P+GI WP SF+L+DL AN I+H++AHDA +DVY
Sbjct: 130 QRGNSRWDLLHVLRACYSLCPNGITWPLNIQNKPSFRLKDLTQANAIKHLSAHDAMSDVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN-TALIA 241
ATL L LI+E +P+LF++L+D+R K QL+K+ID+ M PL+ + N IA
Sbjct: 190 ATLELTKLIKEAQPQLFQFLFDHRTKYQLQKIIDLDTMNPLIFIMNKINNKYKNFITYIA 249
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKC 300
P++ HP + +I C+L+G++ +L+ + ++L+++H + ++ +P++ + LN C
Sbjct: 250 PISRHPINPNILIACDLNGNIDNLVNLNINTIYQKLYSNHITIYDILKKIPLRFIRLNAC 309
Query: 301 PILMPIDYCKKEHFE-----RWGIDHKRCLENLTLLRQQTN---LRDRFKAIY------- 345
PIL+PI++ +K + + +++ CL+NL +R N LR++ +Y
Sbjct: 310 PILIPINFFEKNNINTTYTMQLSTNYRYCLKNLNFIRMHENSVYLRNKINTLYTIIGSYI 369
Query: 346 NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405
N+ ++ VDSQLY F + DR+I++ I RT ++L L D RL L F YRA
Sbjct: 370 NQKNIYNNLHVDSQLYHRLFNNSDRKIIESIRRTHSKELKNLCTDHVDTRLKPLLFYYRA 429
Query: 406 RNFPHTLSEKEKQDWLEHRKKML-TRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
RNFP+TL+ +E++ WL ++K L + + Y +KL L YK ++ K L+++L +Y
Sbjct: 430 RNFPNTLNYQEQKKWLNYKKNKLFNTDQSKSYNDKLNQLLSIYKYNDQKITLLHSLQKYY 489
Query: 465 QWVIPKE 471
Q++
Sbjct: 490 QYLYEVH 496
>gi|88800886|ref|ZP_01116440.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
gi|88776399|gb|EAR07620.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
Length = 517
Score = 533 bits (1375), Expect = e-149, Method: Composition-based stats.
Identities = 172/475 (36%), Positives = 252/475 (53%), Gaps = 14/475 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
++ YDYET+G + DR AQFA VR D IE FCKP D + DP AV IT
Sbjct: 8 PPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQIT 67
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
++P + + G+ E EFS+ +H + PNTC GYN+IRFDD SR +FYRN + Y
Sbjct: 68 RLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNLINPYERE 127
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWDLLDV+R +A PDGI+WP RDDG+ SF+L+ L ANG+ H NAHDA +DV
Sbjct: 128 WKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANAHDAVSDV 187
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
AT+AL LIR+++PKLF+Y + R+K++ R+ ID+ P +H SG AS +
Sbjct: 188 KATIALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASEFCMGIEV 247
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
P+ HP + VI ++ D D D+ L L+ +EL +G P+K +HLN+
Sbjct: 248 PLMAHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLKTIHLNRS 307
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQ 359
P++ P+ E R G+D + + L ++ + ++ D +
Sbjct: 308 PMIAPMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAAITDPEQA 367
Query: 360 LYDGFFADVDRQIMDRIL--RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LY GF +D D+ +++R+ + PEQ + D RLP + AR FP L+E++
Sbjct: 368 LYSGFISDHDQALLNRMRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPDCLTEQQL 427
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQ------SLSGEYKGDEGKEGLINALYEYLQW 466
+W + R+ L + E + Q +L E D + YL+
Sbjct: 428 SEWQDQRRTYLIEQQDERHLTLSQALTDTLALLAETPDDPA----LTDTRMYLES 478
>gi|118602911|ref|YP_904126.1| exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
gi|118567850|gb|ABL02655.1| Exodeoxyribonuclease I subunit C [Candidatus Ruthia magnifica str.
Cm (Calyptogena magnifica)]
Length = 471
Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats.
Identities = 180/471 (38%), Positives = 273/471 (57%), Gaps = 16/471 (3%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F YDYETFG +DR +QFAG+R D + I+ ++F+CKP +D LP PEA FITG
Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNIIDE-QMFYCKPTNDCLPSPEACFITG 60
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I+PQ + G++E EF ++IH FS NTCI+GYN+IRFDD ++R+ YRNF D Y W W
Sbjct: 61 ISPQLCEQKGMIEHEFIKKIHAQFSTSNTCIVGYNSIRFDDEFTRHTLYRNFIDPYTWHW 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NGN+RWD+L+V+R YA D ++W G FKL L+LAN IEH NAHDA ADV
Sbjct: 121 QNGNTRWDILNVVRLCYALKKDTSLKWVYDKQGNPVFKLDQLSLANDIEHANAHDALADV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
+AT+A+ +I++ +P+LF Y + R K + I + P++H + M A S T L
Sbjct: 181 HATIAIAKIIKQTQPQLFNYSFSLREKKTVASKISL--FEPMLHTTDMHPAQLSCTRLSV 238
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKC 300
+A+HP Y D V+ NL D V +LD L FT EL K + + IKE+ NK
Sbjct: 239 ALAYHPEYNDRVLMFNLDQDPCVLLELDIEALKTLTFTKQSELSKEVERLQIKELIFNKS 298
Query: 301 PILMP-IDYCKKEHFERWGIDHKRCLENLTLLRQQT-NLRDRFKAIY-NKPYTSSSQDVD 357
P+ +P I + + ++ ID +C+++L+ ++ + + +Y N + ++VD
Sbjct: 299 PMFVPNIYKLEPKIIKQLNIDMNQCMQHLSFIKDNQLKIGKIVQDLYKNDQKHIALKEVD 358
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
LYDGF + D++I ++I + +L + F D +L LF ++ARN+P+TL+E EK
Sbjct: 359 QSLYDGFIDNTDKRICNQIQALSVHKLKEFHPKFKDEKLSRLFMHFKARNYPNTLTENEK 418
Query: 418 QDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+DW E + + + I++Y K+ ++ ++ +E L L Y
Sbjct: 419 EDWFEIVQGRIQTNQNGYITIDDYLQKINTMRTQH---PHQEKLWQQLEAY 466
>gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
3_1_45B]
gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
3_1_45B]
Length = 502
Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats.
Identities = 160/496 (32%), Positives = 252/496 (50%), Gaps = 34/496 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAV 58
+ F YDYETFG D DRPAQFAG R + + ++ E+F+C+P +D LP+PE+
Sbjct: 6 VETTFYWYDYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIFYCRPTEDQLPNPESC 65
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGITPQ GV E+EF+ I + + P T IGYN + FDD +R +F+RNF D Y
Sbjct: 66 LLTGITPQYCAEKGVCESEFADLIWERLNTPGTVSIGYNTLGFDDEVNRFLFWRNFLDPY 125
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD------------GATSFKLQDLALA 166
SW G SRWDL V+ A +A D I+WP ++ FKL+ L A
Sbjct: 126 THSWAKGCSRWDLFPVVCAAWALRGDTIKWPRWEEIDPIKYPKAEGRKGVCFKLEFLTKA 185
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
NGIEH +AHDA +DV AT+ + L+ E++PKL+ + ++ R ++ + +M P+V V
Sbjct: 186 NGIEHGHAHDALSDVEATIGMAKLLAEREPKLWRWAFENRTTAKVSAA--VADMKPVVWV 243
Query: 227 SGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTS-HDELK 285
+ FG +R T + A K +LS D V Q L ++ +RLF S + +
Sbjct: 244 TPKFGIARGCTGIAACFFQE---KHDCWMWDLSFDPTVLQSLSYEEIKQRLFPSIKERAQ 300
Query: 286 GLVPVPIKEVHLNKCPIL-MPIDYCKKEHFERWGIDHKRCLENLTLLRQ-QTNLRDRFKA 343
G+ +PI+ + N P + + +E +++GID NL L+ ++ F
Sbjct: 301 GIERLPIRRLKANASPFVCANLKVLSRERAQKYGIDLDVAAANLQKLKAVAPAVQTIFAE 360
Query: 344 IYNKPY----TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTL--NLPFSDRRLP 397
+ + + S D D LY GF + D+ +I PE L+ F D++
Sbjct: 361 LAAERRSNDAAAPSADPDRSLYSGFASSGDKARFVQIRSMMPEHLAAEAPKFRFDDQKFA 420
Query: 398 ELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGE-YKGDE 451
E+ FR+RARN+P LS +E + W + + R + +Y +++ DE
Sbjct: 421 EMLFRFRARNWPEMLSAEETERWRQFCADRIMSGRDGMLQLSDYFDQIDEAQASGLYDDE 480
Query: 452 GKEGLINALYEYLQWV 467
+ ++ ALY++ + +
Sbjct: 481 RHQQVLEALYDWGETL 496
>gi|15617148|ref|NP_240361.1| exonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
gi|11386767|sp|P57620|EX1_BUCAI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|25403649|pir||G84994 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Buchnera sp.
(strain APS)
gi|10039213|dbj|BAB13247.1| exodeoxyribonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 413
Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats.
Identities = 176/408 (43%), Positives = 253/408 (62%), Gaps = 6/408 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 8 TPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 67
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 68 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 127
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 128 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 187
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 188 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 247
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 248 PIAWHENNSNILIAIDLFKDIKTLIN-----MCKKICFDSIFIKNLLDSGVVLLHLNRCP 302
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 303 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 362
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
Y+GFF D++ + I T P L + F D RL LFFRYRARNF
Sbjct: 363 YNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNF 410
>gi|148927622|ref|ZP_01811085.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
gi|147887031|gb|EDK72536.1| Exodeoxyribonuclease I [candidate division TM7 genomosp. GTL1]
Length = 476
Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats.
Identities = 163/472 (34%), Positives = 258/472 (54%), Gaps = 6/472 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F YD ET G D DR QFAG R + I + DD LP P+AV +
Sbjct: 5 MAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVMV 64
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITPQK +G+ EAEF + H P T +G+NNIRFDD + R +RNF+D Y W
Sbjct: 65 TGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNFHDPYEW 124
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+W +G SRWDLLDV+R A P GI WP + +L+ L N +EH AHDA +D
Sbjct: 125 AWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQAHDALSD 184
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYA +A+ ++R+K+PKLFEYL+ R+K + +L++ P+V+ SG + A+ T+++
Sbjct: 185 VYALIAITRMVRDKQPKLFEYLFSIRDKKAVTQLVNPYKPKPIVYTSGRYDANYHKTSVV 244
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG--LVPVPIKEVHLN 298
P+A R + +L + + F DL ++ KRL +E K V +P+KEV N
Sbjct: 245 FPIAEGSR-PGTTFVYDLRHNPQQFTDLSPEEIKKRLLAKWEERKDPNFVAIPVKEVTHN 303
Query: 299 KCPILMPIDYCKK-EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
+ P + P+ ++ +E + ++ ++L +L++ +L + K Y S D +
Sbjct: 304 RAPAVAPLGVLEQGGGWENIQLTNETVRKHLEVLQRSPDLVTKIKTAYESRSFPKSSDAE 363
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
+QLYD F D D+ + + + +L+ + F+D+RLP L RY+ARNFP +LSE+E+
Sbjct: 364 AQLYDSFLNDKDKTHIQAVRNASERELADFHPEFNDKRLPPLLIRYKARNFPRSLSEEEQ 423
Query: 418 QDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIP 469
+W +R L ++ + Y + ++ + E + L+ L + + ++P
Sbjct: 424 VEWEAYRATRL-QAELPGYMGAIARIA-KTDPSENTQFLLQELQLWAESIVP 473
>gi|330837024|ref|YP_004411665.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
gi|329748927|gb|AEC02283.1| Exodeoxyribonuclease I [Spirochaeta coccoides DSM 17374]
Length = 474
Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats.
Identities = 163/479 (34%), Positives = 250/479 (52%), Gaps = 25/479 (5%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F YD ETFG + DR QFAGVR D + + + +P DYLPDP A +TG
Sbjct: 5 KTFFWYDLETFGLNPYYDRIVQFAGVRTDMDLTPVGQPILLYARPTIDYLPDPLACLVTG 64
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A+ G+ E +F+ I + NTC +G+N+IRFDD + RN+ YRN D YR W
Sbjct: 65 ITPQEAMEKGLRENDFANAILKEMGQKNTCSVGFNSIRFDDEFIRNLLYRNLIDPYRREW 124
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQW-PSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+GNSRWD+LD++RA + PD + W PS+D+G FKL +L AN I H +AHDA +DV
Sbjct: 125 ADGNSRWDVLDLIRAAHDLRPDSLAWPPSKDNGNPVFKLTELTTANNISHEHAHDALSDV 184
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YATLA+ L++E+ P+LF + R+K +++++++ TP +H F R T +
Sbjct: 185 YATLAISRLLKERNPQLFVWALSLRDKKKVKEIVNPPFGTPFLHTCASFTTPRGCTRPVV 244
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP-IKEVHLNKC 300
+++ P +SVI +L+ D+ + + VP + + LNKC
Sbjct: 245 AISFVPSNPNSVICFDLTQDLDPLFTASDEDI--------------MRVPGVLRIALNKC 290
Query: 301 PILMPIDYCKKEH--FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDS 358
P + P+ K+ R ID K + +RQ+ NL RF++ + D D
Sbjct: 291 PFVSPLSVLGKDDAIARRLDIDMKTAMARYERIRQEINLPSRFRSAVERDEYEQVADPDF 350
Query: 359 QLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
++Y GFF+D DR+ + +T Q +LNL F D R PE+ +RY RN+P TL E++K
Sbjct: 351 RIYAGGFFSDADRERFSIVRKTEASQKLSLNLRFDDSRAPEMVWRYVCRNWPETLDEQQK 410
Query: 418 QDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVIPK 470
W + + Y K+Q ++ ++ AL E+ + + +
Sbjct: 411 ARWQSFSANRILNPPGDIMVTWQFYTRKIQEKLQSNDTPAHEKPVLAALKEWGEMIARE 469
>gi|213580552|ref|ZP_03362378.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 342
Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats.
Identities = 168/342 (49%), Positives = 241/342 (70%), Gaps = 1/342 (0%)
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
RWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+
Sbjct: 1 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAM 60
Query: 188 VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHP 247
L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP
Sbjct: 61 AQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHP 120
Query: 248 RYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPID 307
+++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L +
Sbjct: 121 ENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQAN 180
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFA 366
+ E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+
Sbjct: 181 TLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFS 240
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR++
Sbjct: 241 DADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQ 300
Query: 427 MLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 301 VLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 342
>gi|145207002|gb|ABP37869.1| EpsE [Pseudoalteromonas sp. SM9913]
Length = 356
Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats.
Identities = 171/350 (48%), Positives = 236/350 (67%), Gaps = 2/350 (0%)
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
++ G+VEAEF +IH FSVPNTC+ GYN+IRFDD SR FYRNFYD Y + N NSR
Sbjct: 1 MQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREYKNNNSR 60
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WD++D++RA YA P+GI+WP ++DG+ SFKL+ L +ANGIEH AHDA +DV AT+AL
Sbjct: 61 WDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVTATIALA 120
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
LI+EK+PKL+ + + RNK L +L+D+ NMTPLVH S A++ T +AP+++HP
Sbjct: 121 KLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVAPMSFHPV 180
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307
K++VI +L+ + +V DL+ QL KRL+T +L +G +PV +K VHLNKCPIL P
Sbjct: 181 NKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKCPILAPAK 240
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDGFFA 366
E+ R GID ++CL NL +L+ T LRD+ ++N+ S++ +VD LYDGF +
Sbjct: 241 TLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEQGDYSATTNVDYLLYDGFTS 300
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
D+ I PE L++L L F D + L FRYRARN+P TL+ E
Sbjct: 301 HADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPETLNPPE 350
>gi|213025919|ref|ZP_03340366.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 338
Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats.
Identities = 163/338 (48%), Positives = 237/338 (70%), Gaps = 1/338 (0%)
Query: 132 LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI 191
+DVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L+
Sbjct: 1 MDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYATIAMAQLV 60
Query: 192 REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKD 251
+ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP ++
Sbjct: 61 KTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRN 120
Query: 252 SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKK 311
+VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + +
Sbjct: 121 AVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRP 180
Query: 312 EHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDR 370
E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+D DR
Sbjct: 181 EDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFSDADR 240
Query: 371 QIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTR 430
M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT
Sbjct: 241 AAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTP 300
Query: 431 SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 301 EFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 338
>gi|330860010|emb|CBX70337.1| exodeoxyribonuclease I [Yersinia enterocolitica W22703]
Length = 337
Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats.
Identities = 161/336 (47%), Positives = 239/336 (71%), Gaps = 2/336 (0%)
Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
MRA YA P+GI WP ++G SFKL+ L ANG+EH++AHDA +DVYAT+A+ +++
Sbjct: 1 MRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMSDVYATIAMAKRVKQA 60
Query: 195 KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVI 254
+P+LF+YLY +R+K+++ LIDI +MTPLVHVSGMFGA+R NT+ +AP+AWHP K++VI
Sbjct: 61 QPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVI 120
Query: 255 GCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL-VPVPIKEVHLNKCPILMPIDYCKKEH 313
C+L+GDM +LDS L +RL+T D+L VP+K VH+NKCP+L P E+
Sbjct: 121 MCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHINKCPVLAPAKTLLPEN 180
Query: 314 FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQI 372
+R GID +RCL+NL LLRQ +R++ A++ + + S DVD+QLY+GFF+D DR
Sbjct: 181 ADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVSDDVDAQLYNGFFSDADRAT 240
Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432
M IL+T + L L+L F D RL L FR+RARN+P+TL++ E+Q WLEHR++ L +
Sbjct: 241 MKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLTDSEQQRWLEHRREALNPEK 300
Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
+++Y +L++L +Y+ D+ K L+ AL++Y + ++
Sbjct: 301 VQDYVLQLEALYNQYEDDKEKLALLKALFDYARDLV 336
>gi|325971901|ref|YP_004248092.1| exodeoxyribonuclease I [Spirochaeta sp. Buddy]
gi|324027139|gb|ADY13898.1| Exodeoxyribonuclease I [Spirochaeta sp. Buddy]
Length = 471
Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats.
Identities = 161/473 (34%), Positives = 243/473 (51%), Gaps = 23/473 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
YD ETFG D DR AQFAG R D I V +CK +DDYLPDP + IT
Sbjct: 8 TTIFWYDLETFGLDSRYDRIAQFAGQRTDLNLNPIGEPIVLYCKLSDDYLPDPLSCTITS 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+ + G+ E++ RI+ FS PNT + G+N IRFDD + RN YRNF D Y+ W
Sbjct: 68 ITPQEVNKKGICESDLIDRINSEFSKPNTVVAGFNTIRFDDEFIRNALYRNFLDPYKREW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWP--SRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
DN SRWD++D++RA Y P+GI WP + G +F+L L AN IE V AHDA D
Sbjct: 128 DNYCSRWDIIDLVRAAYDLRPEGIAWPPRKEETGNPTFRLVALTQANNIEQVGAHDALVD 187
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+A+ LI+EK+PKL+EY + R K Q++K++ P+++ + F + + LI
Sbjct: 188 VRATIAIARLIKEKQPKLYEYYFALRAKTQVKKVVQTPFGEPVLYTAAFFSKNEGCSRLI 247
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
P+ +++I +LS D+ L K +G+ + +NKC
Sbjct: 248 TPITHMKSNANAIICFDLSKDVAPLLQATEETLLK--------TEGVF-----TLSINKC 294
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P + P++ + + GID + L + QT L + I + DVD QL
Sbjct: 295 PFVSPLNVLTDQLAIKLGIDKELALFRHQQIVNQTKLLMTARNI--EEKYEGVDDVDFQL 352
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YD FF D D++ + I + P+ +L+L F D R+ L FR+ ARN+ L++++K+ W
Sbjct: 353 YDRFFGDADQKRFNLIRQAEPKDKLSLHLDFEDNRVAPLLFRHVARNWSEVLTDEQKRKW 412
Query: 421 LEHRKKM-LTRSRIEE-----YKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
L + +K K++ + ++ ++ L Y + +
Sbjct: 413 RSFCANRTLNPPGSIKMNWNFFKRKIEEKLASTETSAEEKRVLADLKAYGEEL 465
>gi|27904977|ref|NP_778103.1| exonuclease I [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
gi|32129519|sp|Q89A43|EX1_BUCBP RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|27904375|gb|AAO27208.1| exodeoxyribonuclease I [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 481
Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats.
Identities = 180/467 (38%), Positives = 283/467 (60%), Gaps = 11/467 (2%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ YDYETFG++ ALD+P+QF+ ++ D + I S + FC P+ DYLPDPE+V ITGI
Sbjct: 10 TFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+P+ GV E EF+++I+ F +TCIIGYNNI FDD ++RNIFYRNF +SY WSW
Sbjct: 70 SPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNFLNSYEWSWK 129
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWD+LD++RA Y P+GI WP +D + S +L D++LAN I H AH+A +DVYA
Sbjct: 130 NGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHNASSDVYA 189
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ + LI++KKPKLF + + YR K + LID+ ++ P+V++S FG + I P+
Sbjct: 190 TMNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISRFFGVVNRYISYIVPI 249
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
WHP + ++ +LS D++ + KR + K + + I+ +++N+CPIL
Sbjct: 250 LWHPINSNILVSIDLSQDVQKILN-----FFKRNSILNVNYKEIFLMGIRFIYVNRCPIL 304
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQ----TNLRDRFKAIYNKPYTSSSQDVDSQ 359
+P + + + R I++K NL LLR+ L+ +I P + S +VD +
Sbjct: 305 IPTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKKFLCSIAEAPKYNGS-NVDLK 363
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
+Y+ FF+ +D ++ I T P+++ +N D R+ +LF + AR P L EK
Sbjct: 364 MYNSFFSYIDNNVIKNIHSTLPKRI-KINFMKYDNRINQLFILFLARYRPDMLDYSEKYF 422
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
W++ + + + I++Y+NK+ L +YK L+ L+EY+++
Sbjct: 423 WIQRYLNIFSYANIQKYENKILKLIVKYKNHVRNVQLLEELFEYVKY 469
>gi|148244981|ref|YP_001219675.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
gi|146326808|dbj|BAF61951.1| exodeoxyribonuclease I [Candidatus Vesicomyosocius okutanii HA]
Length = 473
Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats.
Identities = 169/480 (35%), Positives = 265/480 (55%), Gaps = 26/480 (5%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F YDYETFG +DR +QFAG+R D + ++ ++F+CKP +D L PE ITG
Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITG 60
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I+PQ + G++E +F ++IH S P+TC+IGYN+IRFDD ++R YRNF D Y W W
Sbjct: 61 ISPQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWHW 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NGN+RWD+LDV+R YA D ++W + FKL L+LAN IEH AH+A ADV
Sbjct: 121 KNGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALADV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+A+ +I++ +P+LF Y + R K +++ I + P++H S ++ A+ S T L
Sbjct: 181 YATIAIAKIIKKTQPQLFNYAFSLRKKKTIKEKIKL--FEPMLHTSRVYSATLSCTRLSV 238
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHD------ELKGLVPVPIKEV 295
+A+H Y D V NL D + +L+ L +FT ++ E+KGL IKE+
Sbjct: 239 ALAYH-SYHDRVFVFNLDQDPCILLELNIKTLKTLMFTKNNQSALSKEMKGLQ---IKEL 294
Query: 296 HLNKCPILMPIDY-CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSS 352
NK P+ +P Y + + ++ ID CL+ L +++ + + N
Sbjct: 295 IFNKSPMFVPNVYKLESKIIKQLKIDMSTCLQRLEFIKKNQVIISKVVQDLYRNDQQRQP 354
Query: 353 SQDVDSQLYDGFFADV-DRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
S DVD LYD F D D+ I ++I + +L + F D RL +L ++ARN+P+
Sbjct: 355 SSDVDQALYDDFINDNTDKHICNQIQTLSTNELKNFHPKFKDNRLSKLLIHFKARNYPNI 414
Query: 412 LSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
L+E EK++W + ++ + I++Y ++ + ++ +E L L Y +
Sbjct: 415 LTENEKEEWFKTVQERVQTGKNGYTTIDDYLARINIIRKQH---PNQEKLWKQLETYSKS 471
>gi|221134294|ref|ZP_03560599.1| exodeoxyribonuclease I [Glaciecola sp. HTCC2999]
Length = 488
Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats.
Identities = 161/481 (33%), Positives = 254/481 (52%), Gaps = 21/481 (4%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ +DYET+G D P QFA +R D ++ + K DYLP P+AV +TGI
Sbjct: 7 SFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVTGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ L +G E F ++IHQ PNTC++GYN+I+FDD SR F+RNF D Y+ +
Sbjct: 67 TPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPYQREYL 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+GNSRWDL++++RA YA P+GI+WP D+G SFKL+ L NGI H NAHDA +DV+A
Sbjct: 127 HGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDALSDVHA 186
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+A+ LI++++PKLF Y Y R+K + ++++ + PL+ ++ A ++I P+
Sbjct: 187 TIAIAQLIQQQQPKLFAYAYQLRSKQAVIRILEQHHGQPLIFINPYRSAKFGCVSIIMPM 246
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF----TSHDELKGLVPVPIKEVHLNK 299
HP K++ + +L+ D+ + D L + F ++E + + IK N+
Sbjct: 247 CPHPVNKNATVCIDLTKDIFPLINEDLDTLQRIQFLPKAQRNEETPDIATIVIKH---NQ 303
Query: 300 CPILMPIDYCKKEHFERWGIDH---KRCLENLTLLRQQTN----LRDRFKAIYNKPYTS- 351
CP L PI + E ID + +E+L + Q L + ++ Y +
Sbjct: 304 CPFLAPIKTLSQSRSEALNIDLNKVDQQVEHLKHICQDQESYANLIMTLTQLNSQTYDAE 363
Query: 352 -SSQDVDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP 409
+ DV++ LY GF D ++Q ++ +P +L L R+ ELF R+ ARNF
Sbjct: 364 KPATDVEASLYTGGFMNDAEKQFCQQVHMASPNELVNLKNNTPSPRIDELFQRFIARNFL 423
Query: 410 HTLSEKEKQDWLEHRKKMLTRS----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
TLS + W ++ LT + + Y ++ L + L+ L +Y +
Sbjct: 424 DTLSTDLQSQWYVDCQRRLTNNTQKLTLMRYFEIIEELKSTENLSSTQLYLLEELTKYGK 483
Query: 466 W 466
Sbjct: 484 E 484
>gi|319760584|ref|YP_004124522.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
gi|318039298|gb|ADV33848.1| exodeoxyribonuclease I [Candidatus Blochmannia vafer str. BVAF]
Length = 491
Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats.
Identities = 193/480 (40%), Positives = 299/480 (62%), Gaps = 17/480 (3%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+F IYDYETFG + ALDRPAQFAG+RVD + I E+FFC+ DYLP+PE+V TG
Sbjct: 8 PNFFIYDYETFGLNPALDRPAQFAGIRVDDKLCPIAKKEIFFCQIPHDYLPNPESVLTTG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ L+ G+ E+EF+ RI F+ PNTCI+GYNNI FDD ++R+ FYRNF D Y W++
Sbjct: 68 ITPQYTLQYGLTESEFAYRIFNIFNKPNTCIVGYNNINFDDEFTRHTFYRNFCDPYLWAY 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++GNSRWDLL ++RA Y+ P+ I WP + SF+L DL AN IEH+N HDA +DVY
Sbjct: 128 NHGNSRWDLLPILRAYYSLYPEKIYWPINNKNKISFRLIDLTYANHIEHLNVHDAMSDVY 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN-TALIA 241
ATL ++ L ++ P F++LY++R K+QL+K+I+ + PL+ +S + +N +A
Sbjct: 188 ATLEIMKLTQKTHPYFFQFLYNHRTKDQLKKIINFDFIDPLIFISNTINDTYNNFIKFLA 247
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKC 300
P++WHP K+ +I +L+ + +L+ +L + L+ L L +P++ + LN C
Sbjct: 248 PISWHPNNKNILIAYDLNSKPDLLLNLNINKLYQNLYQGTQNLSDLFKQIPLQLIKLNSC 307
Query: 301 PILMPIDYCKKEHFERWGIDH----KRCLENLTLLRQQTN---LRDRFKAIYNK------ 347
PIL+PI KKE+ + + CL+NL ++ N L+++ K Y
Sbjct: 308 PILIPIHLIKKENIFYYKNSLFSYYQYCLKNLNFIQTNINHTYLKNKIKTFYTTIESYFK 367
Query: 348 -PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR 406
T VD+QLY FF DRQ++++I T +QLS + + +D RL LFF Y+AR
Sbjct: 368 LKQTYQKVHVDNQLYFKFFNFSDRQLINKIRNTNIQQLSKIKINSTDTRLKLLFFFYKAR 427
Query: 407 NFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
NFP++L+ KE++ WL++++ +L +S+ + Y + +L ++ + + L++ L +Y +
Sbjct: 428 NFPYSLNVKEQKSWLDYKRLLLQQSKFQNYLTNIDNLLL-HQNNLIQINLLHKLKQYYKH 486
>gi|33519912|ref|NP_878744.1| exonuclease I [Candidatus Blochmannia floridanus]
gi|33504257|emb|CAD83520.1| exodeoxyribonuclease I [Candidatus Blochmannia floridanus]
Length = 501
Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats.
Identities = 201/485 (41%), Positives = 306/485 (63%), Gaps = 22/485 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+IYDYETFG + ALDRPAQFA +RV+ +E EVFFC+ +DYLP+PE+V ITG
Sbjct: 8 PTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITP L +G++E +F+ +I Q F+VPNTCI+GYNNI FDD +SRNIFYRNFYD Y+WS+
Sbjct: 68 ITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYDPYKWSY 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWDLL V+RA Y+ P GIQWP SF+L DL LAN I+H+NAHDA +D++
Sbjct: 128 HHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAHDATSDIF 187
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN-TALIA 241
ATL ++ LI+ +P+LF++LY++R KNQL+K+I++ +M PL+H+S +N +
Sbjct: 188 ATLEIMKLIKYTQPQLFQFLYNHRTKNQLQKIINLNSMKPLIHISNKINNKYNNFIHFLL 247
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVP-VPIKEVHLNKC 300
P+ HP + +I NL + + +L+ L + + + + L+ +P++ + LN C
Sbjct: 248 PITLHPNNHNVLITYNLLNKLDILWNLNINTLYQNIKDNQQCIYNLLKQIPLQLIRLNSC 307
Query: 301 PILMPIDYCKKEH-----FERWGIDHKRCLENLTLLRQQTN---LRDRFKAIY------- 345
PI +PI ++ + D++ L+NL ++Q+ N L+ + K+ Y
Sbjct: 308 PIFIPITVLQENNNIFKYTSELLSDYQNHLKNLHEIKQKINYTHLQQKIKSFYVIIESYL 367
Query: 346 NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILR-TAPEQLSTLNL--PFSDRRLPELFFR 402
NK S VD+QLY+GFF D +I+ +I T ++LST+++ +D RL L F
Sbjct: 368 NKIKNKLSTHVDNQLYNGFFQYSDCRIIKQIRNITDVQKLSTIHINSNSNDNRLKSLLFF 427
Query: 403 YRARNFPHTLSEKEKQDWLEHRKKM-LTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
YR+RNFPHTL+ +EK+ W ++K M L + + + Y + + L + + K L+++L
Sbjct: 428 YRSRNFPHTLNSEEKKIWTTYKKNMLLNQDKYKNYLHHINYLLFN-QNNIKKINLLSSLK 486
Query: 462 EYLQW 466
+Y +
Sbjct: 487 KYYTY 491
>gi|330898429|gb|EGH29848.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT]
Length = 307
Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats.
Identities = 142/310 (45%), Positives = 194/310 (62%), Gaps = 4/310 (1%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +D
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
V AT+AL LIREK+PKL++YL R+K ++++ + + M PLVH+SG F A+R+ ++
Sbjct: 180 VRATIALARLIREKQPKLYDYLLALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVV 237
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNK 299
P+AWHP ++++I C+L D + L +RL+T HD L G +PVP+K +H+N+
Sbjct: 238 LPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINR 297
Query: 300 CPILMPIDYC 309
CP++ P+
Sbjct: 298 CPVIAPLGVL 307
>gi|310780268|ref|YP_003968600.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
gi|309749591|gb|ADO84252.1| Exodeoxyribonuclease I [Ilyobacter polytropus DSM 2926]
Length = 487
Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats.
Identities = 149/478 (31%), Positives = 269/478 (56%), Gaps = 20/478 (4%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M ++ YDYETFG D DR +QFAGVR D ++ ++ V++CK A+DYLP+PEA I
Sbjct: 1 MKKTYLWYDYETFGADPKRDRISQFAGVRTDMDFKVVDE-MVYYCKVAEDYLPNPEASII 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP+++ G+ E E + + + F+ T IGYN+I+FDD +RN+FYR F D Y
Sbjct: 60 TGITPKESNEKGITENELAEILFKEFTKEGTVTIGYNSIKFDDEVTRNLFYRTFRDPYER 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W N SRWD + + +Y P+ ++WP +DDG SF+L++L++ANGI H NAHDAK+D
Sbjct: 120 EWKNNCSRWDFMRAILGVYVMKPELLKWPLKDDGRPSFRLEELSIANGIIHENAHDAKSD 179
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
VYAT+ L LI +K P +F+Y ++ R+K+ ++ + + +H+ +G R ++I
Sbjct: 180 VYATIGLAELISKKSPNVFDYFFNLRDKDFVKSELSKDEL--FLHIDFGYGYDRGYASII 237
Query: 241 APVA--WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK--GLVPVPIKEVH 296
+ + K++ + ++ D+ + +D ++ + L+ S+++L+ G+ +K++
Sbjct: 238 YKIGDFINQGDKNAFLFIDILSDVENLEKMDFDEIKEYLYYSNEKLEEIGITRPGLKQIR 297
Query: 297 LNKCPILMPIDYCK--KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
+N+ P+++P + + + E ++ K +E + L + ++ F ++ +
Sbjct: 298 INQSPLVIPYNNLREKPKFLEEISVNLKYKMEKIKKLSAKR--KEEFLNVFTREKDKVKI 355
Query: 355 DVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
D D +Y F + D++ M + R + + F D++ EL+FR+ RN P L+E
Sbjct: 356 DADLDIYGSFASQWDKKEMAAMHRENYQYIPK----FKDKKYKELYFRFIGRNMPEILTE 411
Query: 415 KEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
E +W H K ++ R I+ KN++ L +Y+G++ K ++ + Y + +
Sbjct: 412 DEMSEWKRHCYKCISNEREGFQNIDSLKNEILELEKKYRGEKEKIKILKDIKIYAENL 469
>gi|320540911|ref|ZP_08040415.1| putative exonuclease I [Serratia symbiotica str. Tucson]
gi|320029026|gb|EFW11201.1| putative exonuclease I [Serratia symbiotica str. Tucson]
Length = 310
Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 159/310 (51%), Positives = 219/310 (70%), Gaps = 2/310 (0%)
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +SW NGNSRWDLLDVMRA YA PDGI WP +DG SF+L+ L ANG+EH AHDA
Sbjct: 1 YAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHDA 60
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT 237
+DVYAT+A+ +++ +P+LF++L YRNK++L LIDI +TPLVHVSGMFGA+R NT
Sbjct: 61 MSDVYATIAMAKQVKQAQPRLFDFLLQYRNKHKLNTLIDIAEVTPLVHVSGMFGAARGNT 120
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVH 296
+ +AP+AWHP K++ I C+L+GD+ L++ QL +RL+T D L P+P+K VH
Sbjct: 121 SWVAPLAWHPVNKNAAIMCDLAGDLTPLLTLNADQLRERLYTRRDALTVDQPPIPLKLVH 180
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQD 355
+NKCP+L P E+ ER GID + C +NL LLRQ +R++ A++ + S D
Sbjct: 181 INKCPVLAPARTLLPENTERLGIDRRTCRQNLQLLRQHPQVREKVVALFAEAEPYKGSDD 240
Query: 356 VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEK 415
VD++LYDGFF+D D+ M I +T P+ L L+L FSD R+ EL FR+RARN+P+TL+
Sbjct: 241 VDARLYDGFFSDADKAAMKIIQQTKPQDLPALDLAFSDSRMKELLFRFRARNYPNTLNNA 300
Query: 416 EKQDWLEHRK 425
E+Q WL++R+
Sbjct: 301 EQQRWLQYRQ 310
>gi|213621019|ref|ZP_03373802.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
Length = 275
Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats.
Identities = 161/266 (60%), Positives = 201/266 (75%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSGMFGA R NT+ +AP
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 249
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDL 268
+AWHP +++VI +L+GD+ +L
Sbjct: 250 LAWHPENRNAVIMVDLAGDISPLLEL 275
>gi|261855671|ref|YP_003262954.1| exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
gi|261836140|gb|ACX95907.1| Exodeoxyribonuclease I [Halothiobacillus neapolitanus c2]
Length = 495
Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats.
Identities = 158/489 (32%), Positives = 234/489 (47%), Gaps = 27/489 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ YD+ET G D DRP QFA +R + + E I+S + + + LP P+AV +TGI
Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61
Query: 64 TPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
PQ G EAEF+ IH P TC +G+N++RFD R +F+RN D Y W
Sbjct: 62 LPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAHEW 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GNSRWD+LD RA P+GI WP+ + GA + +L+ L N I H NAHDA DV
Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
ATLA L+R + PKLFEYL R K + +D VHVSG ++ + ++ A
Sbjct: 182 ATLAFARLMRAQSPKLFEYLLSLRKKAVVADFVDNPERASFVHVSGRISSTLGSASVFAN 241
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV-PVPIKEVHLNKCP 301
+ + +L D D D LA R F + + +PIK +HLN+ P
Sbjct: 242 LGQVQGINTQRLLWDLRFDPTEVLDDDMETLAARRFLRDADAQDNQHRLPIKLLHLNRAP 301
Query: 302 ILMPIDYCKKEHF-ERWGIDHKRCLENLTLLRQ-QTNLRDRFKAIYNKPYTSSSQDVDSQ 359
+++P K+ ER +D +N + Q + + D+ A+ + +SQD +
Sbjct: 302 VVVPNAILKEGDIVERMQLDLDAVQKNTRTMAQFKREVADKLHAVLAEQMAFASQDAECA 361
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLST----------------LNLPFSDRRLPELFFRY 403
LY+GF +VDR +D R + ++ + + D RLPEL FR+
Sbjct: 362 LYEGFMPNVDRYALDDFNRVFDQAMAAGGSAQDEPVTEALRKLMAQSWQDARLPELVFRF 421
Query: 404 RARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYK------NKLQSLSGEYKG-DEGKEGL 456
AR P L+E E+ W L + + Y + +L + DE L
Sbjct: 422 VARLRPDLLNEDERTQWQSWVDSRLNAAPDQRYMGFAGFFAAIDALMADAAYRDEATLAL 481
Query: 457 INALYEYLQ 465
+ L + +
Sbjct: 482 LTQLKAWGE 490
>gi|116515281|ref|YP_802910.1| SbcB [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|116257135|gb|ABJ90817.1| exodeoxyribonuclease I [Buchnera aphidicola str. Cc (Cinara cedri)]
Length = 475
Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats.
Identities = 160/461 (34%), Positives = 249/461 (54%), Gaps = 5/461 (1%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ YDYETFG++VALD+ +QF + D ++ I + FC P DYLPDPEA+ IT I
Sbjct: 10 IIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILITKIL 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
PQ + G+ E S++IH FS N CIIGYNNI FD+ +RNIFYRN +D Y WSW N
Sbjct: 70 PQYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWSWKN 129
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N WD+L+++RA Y F P + W +G SFKL D+ L N I+H++ HDA +DVYAT
Sbjct: 130 NNFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIHDAYSDVYAT 189
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
+ + K F YLY K + + P ++S FG+ N I +
Sbjct: 190 FLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINYNFGCIMYIG 249
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304
HP YK++++ +LS D + + L K+ T +K L V IK V ++K P+
Sbjct: 250 LHPLYKNNIVIFDLSSDFKKIFN-----LYKKYSTCLISIKKLFNVGIKVVSISKSPLFF 304
Query: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGF 364
+ +H R ID+ +C +N LL+ +++ + ++ D+D LY+ F
Sbjct: 305 SYNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKINDIDLMLYNNF 364
Query: 365 FADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHR 424
F + DR ++ I + P++ + F D R+ +LFFR +ARNF L+ E + W +
Sbjct: 365 FLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKKWQFYC 424
Query: 425 KKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
K + ++EEY K++ ++ ++ L+ L++Y++
Sbjct: 425 KNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDLFKYIK 465
>gi|254284002|ref|ZP_04958970.1| exonuclease I [gamma proteobacterium NOR51-B]
gi|219680205|gb|EED36554.1| exonuclease I [gamma proteobacterium NOR51-B]
Length = 408
Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats.
Identities = 162/410 (39%), Positives = 234/410 (57%), Gaps = 12/410 (2%)
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G E +F +IH +VP TC +GYN+IRFDD R YRNF+D Y+ + NGNSR
Sbjct: 1 MDRGDSECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSR 60
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
WDL+DV RAIYA P+G QWP+RD+G SF+L+DL ANGI H AHDA +DV AT+ L
Sbjct: 61 WDLIDVARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGIAHGAAHDALSDVDATIDLA 120
Query: 189 WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
+ +P LF L R K + L+D+ ++ P+VHVS M+G+ RSN AL+ P+ HP
Sbjct: 121 RHFQNVQPALFAELLSMRRKRHVETLMDLGSLRPVVHVSSMYGSDRSNLALVVPLVRHPV 180
Query: 249 YKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPID 307
++ +I +LS F + +A RLFT EL +G V PIK +H+NK P+++
Sbjct: 181 NRNEIICADLSQPPD-FLSESATDMAARLFTPASELPEGAVRPPIKTIHINKSPVVLNTQ 239
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTN-----LRDRFKAIYNKPYTSSSQDVDSQLYD 362
+ + E ER G+D + +L +RQ + L+ R + IY++ + D D LYD
Sbjct: 240 WVRGEVAERLGLDGEAHRRHLAEIRQANDKNPEGLKQRLQDIYSERRFAPRTDPDVMLYD 299
Query: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422
GFF + DR D + +PEQL++ F D RL EL FRYRARNFP TL +E W E
Sbjct: 300 GFFPNSDRSQFDGLRAASPEQLAS-GWVFEDARLEELLFRYRARNFPATLDAEESARWQE 358
Query: 423 HRKKMLTRSR----IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
H + + + ++ +L + ++AL +Y+Q ++
Sbjct: 359 HCRHRYFDADAPFPLTAFREELAQERSAPDLSDSVARALDALEDYVQTLL 408
>gi|311086852|gb|ADP66933.1| exonuclease I [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
Length = 412
Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats.
Identities = 157/366 (42%), Positives = 229/366 (62%), Gaps = 6/366 (1%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F+ YDYETFG ALD+PAQFA +R D I+ + F+C P+DDYLPDP +V IT
Sbjct: 35 TPTFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLIT 94
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITPQ ++G E FS++I+ NTC++GYNNI FDD +RNIFYRNF+D Y WS
Sbjct: 95 HITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWS 154
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W NGNSRWD+L+++RA YA P GI WP + G TSFKL DL N I H+NAH+A +DV
Sbjct: 155 WKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDV 214
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
YAT+ + L+++K+P+LF++ + R KN+L KLID++N P++++S FGA N + I
Sbjct: 215 YATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCIL 274
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWH + +I +L D++ + + K++ +K L+ + +HLN+CP
Sbjct: 275 PIAWHENNSNILIAIDLFKDIKTLIN-----MCKKICFDSIFIKNLLDSGVVLLHLNRCP 329
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
IL PI +KE + R + + L+++ K I++K T+ +VD ++
Sbjct: 330 ILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQFFNVDLEI 389
Query: 361 YDGFFA 366
Y+GFF
Sbjct: 390 YNGFFN 395
>gi|260072659|gb|ACX30556.1| exonuclease I [uncultured SUP05 cluster bacterium]
Length = 422
Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats.
Identities = 152/425 (35%), Positives = 241/425 (56%), Gaps = 15/425 (3%)
Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+P PEA +TGI+PQ + GV+E EF ++I+ F+ PNTCI+GYN+IRFDD ++R Y
Sbjct: 1 MPAPEACAVTGISPQDCEQKGVIEHEFIKKINSEFTTPNTCIVGYNSIRFDDEFTRYTLY 60
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGIE 170
RNF D Y W W +GN+RWD+LDV+R YA D ++W ++G FKL L+LANGIE
Sbjct: 61 RNFIDPYAWHWKDGNTRWDILDVVRLCYALKKDNSLKWVHNEEGKPVFKLDQLSLANGIE 120
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
H NAHDA ADV AT+ + +I+E +P+LF+Y + R K + I + P++H SGM+
Sbjct: 121 HANAHDALADVRATIGIAKIIKETQPQLFDYAFSLREKKTVEGKIKL--FEPMLHTSGMY 178
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289
A+ S T L +A+HP Y D I NL D + +LD +L +FT EL G+
Sbjct: 179 PATLSCTRLAVALAYHPEYNDRAIVFNLDQDPSILLELDVEELKTLMFTKQSELPDGVKR 238
Query: 290 VPIKEVHLNKCPILMPIDY-CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--N 346
+ IK++ NK P+ +P Y + E+ ID ++ L ++ + ++ N
Sbjct: 239 LEIKDLIFNKSPMFVPNVYKLDPKVVEQLQIDMDTRMQRLDFIKDNQSAINKVVQDLYRN 298
Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR 406
+ + DVD LYDGF + D++I +++ R + ++L + F D++L L ++AR
Sbjct: 299 DKERAPTVDVDQALYDGFMDNADKRIGEQVQRLSVDELKKFHPKFKDQKLSTLLMHFKAR 358
Query: 407 NFPHTLSEKEKQDWLEHRKKMLTRSR-----IEEYKNKLQSLSGEYKGDEGKEGLINALY 461
N+P++L+E E +DW E + + +++Y ++ + ++ KE L L
Sbjct: 359 NYPNSLTEDEAEDWFETVQGRIQAGENGYTSLDDYYQRITLMQKQH---PEKETLWKQLE 415
Query: 462 EYLQW 466
Y +
Sbjct: 416 SYAES 420
>gi|330888491|gb|EGH21152.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020]
Length = 363
Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats.
Identities = 142/362 (39%), Positives = 220/362 (60%), Gaps = 13/362 (3%)
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
F+D Y W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L ANGI+H
Sbjct: 1 FFDPYAREWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQ 59
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
AHDA +DV AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F A+
Sbjct: 60 AHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAA 117
Query: 234 RSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPI 292
R+ ++ P+AWHP ++++I C+L D D+ L +RL+T H+ L +G +PVP+
Sbjct: 118 RNYLGVVLPLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPL 177
Query: 293 KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTS 351
K +H+N+CP++ P+ + E +R +D T L + +D+ +Y K +
Sbjct: 178 KLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFA 237
Query: 352 SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHT 411
+S+D + QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP T
Sbjct: 238 ASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDT 297
Query: 412 LSEKEKQDWLEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
LS +E+Q W + ++ L+ + ++++ L S + ++ +Y Q
Sbjct: 298 LSSEEQQRWQDFCQQRLSDPERGAPNTLKDFATALAECSL--SAAPEQLEVLRQWQDYAQ 355
Query: 466 WV 467
+
Sbjct: 356 AL 357
>gi|90409311|ref|ZP_01217406.1| putative exonuclease I [Psychromonas sp. CNPT3]
gi|90309579|gb|EAS37769.1| putative exonuclease I [Psychromonas sp. CNPT3]
Length = 361
Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats.
Identities = 127/359 (35%), Positives = 211/359 (58%), Gaps = 3/359 (0%)
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
YRNF D Y+ W NGNSRWD++D++RA YA P+GI WP +D SF+L+ L+ N +
Sbjct: 1 YRNFADPYQREWKNGNSRWDIIDLVRACYALRPEGINWPVDNDDVPSFRLELLSKENALA 60
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
H AHDA +DVYAT+A+ LI+EK+PKL+ Y ++ RNK + + + + + TPL+HVSGMF
Sbjct: 61 HDQAHDAMSDVYATIAVAKLIKEKQPKLYNYYFNLRNKKTVLETLKVGSFTPLMHVSGMF 120
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289
A + + I P+ HP K++VI +L+ D+ + L Q+ + +++ +L +G+
Sbjct: 121 PALQGCISYILPICMHPTNKNAVIVVDLAKDLTNLESLSVEQIRQYMYSKTIDLPEGITR 180
Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
+K +HLNKCP + P + + GID +C ++L +++ L D+ A+YN +
Sbjct: 181 PALKLIHLNKCPFVSPAKTLSESRADELGIDRIQCRKSLNFIKENLALVDKLYAVYNTAH 240
Query: 350 TS-SSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
+ LY GFF D+Q ++ + + + L+ F+D RL L + YRARN
Sbjct: 241 APKQGLCAEEMLYHGFFNQEDKQQIEDVKHSNWQVLANKTFHFNDARLKTLLWHYRARNA 300
Query: 409 PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
P T+SE+E+ W + + + ++Y K+ +L+ E++ D K ++ L+ YLQ++
Sbjct: 301 PETMSEEEQDKWARECQAYVLDNT-QQYIEKIDALALEHQNDVAKIEILQKLHHYLQFL 358
>gi|289804761|ref|ZP_06535390.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 321
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 145/281 (51%), Positives = 199/281 (70%), Gaps = 1/281 (0%)
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
+FYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANG
Sbjct: 1 MFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANG 60
Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
IEH NAHDA ADVYAT+A+ L++ ++P+LF+YLY +R+K++L LID+ M PLVHVSG
Sbjct: 61 IEHSNAHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSG 120
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
MFGA R NT+ +AP+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L
Sbjct: 121 MFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHA 180
Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK- 347
VP+K VH+NKCP+L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ +
Sbjct: 181 AVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEA 240
Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLN 388
++S +VD+QLYDGFF+D DR M +L T P L L+
Sbjct: 241 EPFATSDNVDAQLYDGFFSDADRAAMKIVLETEPRNLPALD 281
>gi|303256767|ref|ZP_07342781.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
gi|330999116|ref|ZP_08322837.1| exonuclease [Parasutterella excrementihominis YIT 11859]
gi|302860258|gb|EFL83335.1| exodeoxyribonuclease I [Burkholderiales bacterium 1_1_47]
gi|329575505|gb|EGG57044.1| exonuclease [Parasutterella excrementihominis YIT 11859]
Length = 494
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 129/488 (26%), Positives = 227/488 (46%), Gaps = 29/488 (5%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ ++ YDYETFG + DRP Q+ R D + I + V + + ADDY+P P + +T
Sbjct: 8 STSYLWYDYETFGTEARKDRPVQYGSFRTDTNFNIIGQSMVLYAQLADDYIPSPGSSLVT 67
Query: 62 GITPQKALRD--GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GITP + + + EA+F++ I P T IGYNN +DD +R +F+RN +Y
Sbjct: 68 GITPMSLMDEENALAEADFAKVIRDEMGKPGTITIGYNNRNYDDEMTRFMFWRNLLPAYD 127
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ G R+D+ ++ A+YA +P + WP+++DG FKL L AN + H +AHDA +
Sbjct: 128 TEYGEGRGRFDVFLLVIAVYAVAPQILNWPTKEDGTVCFKLDRLTPANNLPHRHAHDASS 187
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
D +ATL L LI K P+L+EY +++ +L++ PL++V R
Sbjct: 188 DAFATLQLAKLIASKNPRLWEYALSISKSDKIVELLN--EKRPLLYVDRYSLHHRRGLRP 245
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLF-TSHDELKGLVPVPIKEVHLN 298
+ P+ +P ++ I +LS D + + +R F T + +G+ P+P +
Sbjct: 246 VMPLFENPSVRNEWICWDLSADPNEMWAITEKDMKERSFVTREQKEQGIKPLPFVRIKTK 305
Query: 299 KCPILM---------PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
K P LM + + + + L + L L F A+ ++
Sbjct: 306 KQPFLMKGMSVWITKNGQGLFEHPAAYYSENASKILASADRLS---ELLSLFMALADRKA 362
Query: 350 TSSSQD-VDSQLYD-GFFADVDRQIMDRILRTAPEQLSTL--NLPFSDRRLPELFFRYRA 405
++D + LY GF ++ D + M PE+++ L F L EL +
Sbjct: 363 EEHAKDIPEEALYSGGFPSNSDARKMATFRALPPEEMADAFDRLEFDREDLAELTLYFMG 422
Query: 406 RNFPH-TLSEKEKQDWLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINA 459
RN+P L+ + ++ W H+ L + ++ +L+ + DE ++
Sbjct: 423 RNYPEYALTPETERLWRLHKYNKLVKGLGGARTFTQFYEELEEVRA--GADEHGLEILED 480
Query: 460 LYEYLQWV 467
+ Y++ +
Sbjct: 481 VEGYVENL 488
>gi|257486439|ref|ZP_05640480.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 341
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 129/340 (37%), Positives = 205/340 (60%), Gaps = 13/340 (3%)
Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKK 195
RA YA PDGI WP + DG + KL+ L ANGI+H AHDA +DV AT+AL LIREK+
Sbjct: 1 RAAYALRPDGIVWPEQ-DGRVTLKLERLTAANGIDHGQAHDALSDVRATIALARLIREKQ 59
Query: 196 PKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIG 255
PKL++YL+ R+K ++++ + + M PLVH+SG F A+R+ ++ P+AWHP ++++I
Sbjct: 60 PKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRFSAARNYLGVVLPLAWHPHNRNALIV 117
Query: 256 CNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHF 314
C+L D D+ L +RL+T H+ L +G +PVP+K +H+N+CP++ P+ + E
Sbjct: 118 CDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRCPVIAPLGVLRSEDQ 177
Query: 315 ERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIM 373
+R +D + T L + +D+ +Y K ++S+D + QLYDGF D DR++
Sbjct: 178 QRLQLDMEGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQQLYDGFIGDRDRRLC 237
Query: 374 DRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTR--- 430
+++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+Q W + ++ L+
Sbjct: 238 EQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQRWQDFCQQRLSDPER 297
Query: 431 ---SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+ ++++ L S + ++ +Y Q +
Sbjct: 298 GAPNTLKDFATALAECSL--SAAPEQLEVLRQWQDYAQAL 335
>gi|325276504|ref|ZP_08142261.1| exonuclease I [Pseudomonas sp. TJI-51]
gi|324098364|gb|EGB96453.1| exonuclease I [Pseudomonas sp. TJI-51]
Length = 355
Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats.
Identities = 131/345 (37%), Positives = 209/345 (60%), Gaps = 13/345 (3%)
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
G SRWDL+D++R YA P+GI+WP + DG TS +L+ L+ ANGI+H +AH+A +DV
Sbjct: 1 QGGTSRWDLIDIVRTAYALRPEGIEWPQQ-DGRTSLRLELLSKANGIDHGHAHEALSDVR 59
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+AL LIR+K+PKL+++L+ R+K+++ + I + + PLVHVSG F A+R+ ++ P
Sbjct: 60 ATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRL--LQPLVHVSGRFSAARNYLGVVLP 117
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+AWHP ++++I C+L + + L +RL+T H++L G +PVP+K V +N+CP
Sbjct: 118 LAWHPHNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEDLADGELPVPLKLVQINRCP 177
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLR-QQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
+L P+ + +R GID L QQ +D+ + IY K + S+D + QL
Sbjct: 178 VLAPLSVLRPADQQRLGIDLTLLQSRGEQLADQQAQWQDKLEHIYGKDDFAPSEDPEQQL 237
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y+GF D DR++ +++ P QL F D RLPEL FRYRARNFP TL+ +E+Q W
Sbjct: 238 YNGFIGDRDRRLCEQVRALEPAQLGRGQWLFDDPRLPELLFRYRARNFPDTLTPEERQRW 297
Query: 421 LEHRKKMLTR------SRIEEYKNKLQSLSGEYKGDEGKEGLINA 459
++ L++ + + +++ L + DE ++ A
Sbjct: 298 YAFCQQRLSQPQWGAPNTLGDFEQ--ARLQAWERADEAGRRVLEA 340
>gi|145629537|ref|ZP_01785335.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
gi|144978380|gb|EDJ88144.1| exodeoxyribonuclease I [Haemophilus influenzae 22.1-21]
Length = 244
Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats.
Identities = 134/229 (58%), Positives = 166/229 (72%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F IYDYE+FG + A DRPAQFAG+R D + I +F+CK +DYLP PEAV +TGI
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ G+ E EF+ I FS PNTC++GYNNIR+DD +R FYRNF D Y +SW
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
NGNSRWDLLD++RA YA P+GI W DDG SF+L+ L ANGIEH NAHDA ADVYA
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232
T+A+ LI+EK+PKLF+Y ++ R K ++ KL+D +MTPLVHVSGM G
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGMLGN 234
>gi|330983976|gb|EGH82079.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 551
Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats.
Identities = 129/503 (25%), Positives = 226/503 (44%), Gaps = 48/503 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
++D ET G D+ QFAGV +D + I V D +P P A +TGI
Sbjct: 8 LCVFDTETTGLSAHHDQIVQFAGVGLDPELNIIPGDEIVLDVLMRPDVVPSPGAFAVTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ ++ G+ E E + I +F T I GYN RFDD RN FYRN D Y+ W
Sbjct: 68 SISHLMQHGIPEFEAAGHIRNWFMRQEGTNITGYNTQRFDDEVIRNTFYRNMIDPYQHEW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D GNSR D+L ++ ++A P+ ++WP + DG S KL ++ NGI NAHDA+ DV
Sbjct: 128 DKGNSRSDILRLVTMVFALRPEMLRWPLK-DGRYSMKLGEMCRENGISLDNAHDARFDVM 186
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ L+ L+R+ P+L+++ +K Q++ L++ PL V F + + +++ P
Sbjct: 187 ATIELMRLVRKANPRLWDHFLSLGDKVQIQNLVN--QRKPLAMVDPFFSREQGHLSIVLP 244
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCP 301
+ + K + +L D L+ ++ +R+FT +L +G I+ + NK P
Sbjct: 245 IIYDLSVKTKMYAVDLREDPTELLSLEPSEIRRRMFTKVSDLGEGEGISSIRSISTNKQP 304
Query: 302 ILMPIDYC--KKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQ 359
++ + + + R GID +RCL++ T++ R+R + + + D
Sbjct: 305 MVTELSVLRGRDDLTRRAGIDMERCLKHATMIDADKGFRERLQQAFISDF-----DPPED 359
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFS---------DR------------RLPE 398
+Y+G ++ + LR+ +L ++ F D R+ E
Sbjct: 360 VYEGIYSLGMIGRDEHNLRSRTRRLISI-PGFEGQRPEIIATDPHELSTMQSRDRLRMFE 418
Query: 399 LFFRYRARNF------PHTLSEKEKQDWLEHRKKMLTR-------SRIEEYKNKLQSLSG 445
L R + N+ + + E +W++H + S +E + L +
Sbjct: 419 LTLRAKWANYGDEVMGYNKFTPAEIGEWVKHLDRRWFSDHNLKNCSNLERFTTALAEVKA 478
Query: 446 EYKGDEGKEGLINALYEYLQWVI 468
D +E + L ++ +
Sbjct: 479 SVAMDATQEKALEELEAHVMSTV 501
>gi|254451818|ref|ZP_05065255.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
gi|198266224|gb|EDY90494.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
Length = 500
Score = 388 bits (998), Expect = e-106, Method: Composition-based stats.
Identities = 116/428 (27%), Positives = 187/428 (43%), Gaps = 32/428 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G A D+P QFA + D + + + C+ A LP P+A+ +T +T
Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRVT 61
Query: 65 PQKALRDGVVE-AEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
P + + EFS+++ + I +GYN I+FD+ R FYRN + +
Sbjct: 62 PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNLSPNVYATQ 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+R+D+L + A Y PD + WP D G SFKL LA ANG + NAHDA DV
Sbjct: 122 FNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDVE 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
AT+ + LI + P L+ L D +K +++ +++ P V+ G RS T
Sbjct: 182 ATIHIARLIAMRSPALWSELLDNAHKARVQA--KLESFRPYELVTRFGGGEPRSYTGC-- 237
Query: 242 PVAWHPRYKDSVIGCNL-SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
+ + +L + D F + + + P I+ V NK
Sbjct: 238 FCGYSQGNRAQAAFFDLDAADPAEFVEASDEAIFAAV--------DATPKIIRGVSTNKA 289
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P L+ +EH R + LR + R + + + + V+ Q+
Sbjct: 290 PALLEHTAPSEEHLRRAAV---IAEAPAFRLRVGAAMAAR----FVEDPDAPPKPVERQI 342
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE---- 416
Y F+++ D+Q++ + + +D RL +L R A + P LS +E
Sbjct: 343 YGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLSSEETALF 402
Query: 417 ----KQDW 420
++ W
Sbjct: 403 NGFLREKW 410
>gi|149914802|ref|ZP_01903332.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
gi|149811595|gb|EDM71430.1| Exodeoxyribonuclease I [Roseobacter sp. AzwK-3b]
Length = 459
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 115/438 (26%), Positives = 192/438 (43%), Gaps = 30/438 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G D+P QFA + D + + + C+ A LP P+A+ +T ++
Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRVS 61
Query: 65 PQKALRDGVVE-AEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
P + + EFS+++ +F I +GYN ++FD+ R FY+N + +
Sbjct: 62 PDQLTDPNLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+R+D+L + A YA PD WP+ D G SFKL LA ANGI NAHDA DV
Sbjct: 122 FNGNTRFDILPAVYAAYARQPDLFVWPTDDTGRRSFKLDRLAPANGINAHNAHDALGDVE 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
AT+ + LI + P L+ L D +K +++ +++ P V+ G RS
Sbjct: 182 ATIHIARLIATRSPALWSELIDNAHKARVQA--KLESFRPYELVTRFGGGEPRSYMGCFC 239
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+ + + + + D F + + + P I+ V NK P
Sbjct: 240 GYSHGNSARAAFFDLD-AADPSDFLEASDEAIFAAV--------DATPKIIRGVSTNKAP 290
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDR----FKAIYNKPYTSSSQDVD 357
++ EH L ++ R R A + + + + V+
Sbjct: 291 AILEHTAPSAEH-----------LRRAAVIANAPEFRQRVGAALAARFVEDPDAPPKPVE 339
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
Q+Y F+++ D+Q++ R A + + SD RL +L R A P L+ KE
Sbjct: 340 RQIYGEFYSNADKQLLQEFQRAAWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLNAKEA 399
Query: 418 QDWLEHRKKMLTRSRIEE 435
+ + + ++ + + E
Sbjct: 400 ELFKCYLREKWSAPDVPE 417
>gi|213850284|ref|ZP_03381182.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
Length = 225
Score = 382 bits (983), Expect = e-104, Method: Composition-based stats.
Identities = 134/216 (62%), Positives = 164/216 (75%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 129
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 130 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVY 189
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
AT+A+ L++ ++P+LF+YLY +R+K++L LID+
Sbjct: 190 ATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVP 225
>gi|86139894|ref|ZP_01058460.1| exonuclease I [Roseobacter sp. MED193]
gi|85823523|gb|EAQ43732.1| exonuclease I [Roseobacter sp. MED193]
Length = 459
Score = 379 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 112/435 (25%), Positives = 186/435 (42%), Gaps = 24/435 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G D+P QFA + D + + + C+ A LP P+A+ +T +T
Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRVT 61
Query: 65 PQKALRDGVVE-AEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
P + + + EFS+++ +F I +GYN ++FD+ R FY+N + +
Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+R+D+L + A Y P + WP+ D G SFKL LA ANG NAHDA DV
Sbjct: 122 FNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDVE 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALIA 241
AT+ + LI + P L+ L D +K +++ +++ P V+ G RS
Sbjct: 182 ATIHIARLIATRSPALWSELIDNAHKARVQA--KLESFRPYELVTRFGGGEPRSYVGCFC 239
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+ + + + + D F + + P I+ V NK P
Sbjct: 240 GYSHGNSAQAAFFDLD-AADPSEFLGASDEAIFAAV--------DATPKIIRGVSTNKAP 290
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENL-TLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
L+ EH R I + N LR+ + + + + + V+ Q+
Sbjct: 291 ALLEHTAPSAEHLHRATI-----IANAPEFLRR---VGAAMANRFVEDSDAPPKPVERQI 342
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
Y F++ D+Q++ + + SD RL +L R A P L+ E +
Sbjct: 343 YGEFYSSADKQLLQEFQHATWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLTADEMALF 402
Query: 421 LEHRKKMLTRSRIEE 435
+ + + + E
Sbjct: 403 KAYLRDKWSAPDVPE 417
>gi|254451927|ref|ZP_05065364.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
gi|198266333|gb|EDY90603.1| exodeoxyribonuclease I [Octadecabacter antarcticus 238]
Length = 464
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 118/473 (24%), Positives = 205/473 (43%), Gaps = 35/473 (7%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F +D ET G A D+P QFA + D +++IE ++ C+ A +P P A+ +TG+
Sbjct: 2 NFAFFDLETTGVSPAFDQPLQFAAILTDSDFKEIERVDMR-CRLAPHIIPSPHALAVTGL 60
Query: 64 TPQKALRDGVVE-AEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P + + + E EF++ + + S + I G+N+IRFD+ R FY+N +
Sbjct: 61 RPAELIDPALPELFEFTQSLTELVSRWSPAIWTGFNSIRFDEEMLRQAFYQNLQAEVFAT 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NGN+R+D++ + ++ D ++WP + G FKL LA NG E NAHDA DV
Sbjct: 121 QFNGNTRFDIMTAVFGVWHRHRDLLEWPVDETGKVRFKLDRLAPLNGFEGHNAHDALGDV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
A + + LI ++ P L+ L R+K ++ ++ ++PL V G FG
Sbjct: 181 EAIIHIAQLIAQRDPALWTELLASRDKGYVKA--RLERLSPLELV-GRFGGGPPKAITGC 237
Query: 242 PVAWHPRYKDSVIGCNL-SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
+ + + +L + D D L VP I+ + +NK
Sbjct: 238 LCGYSSKNANQAFFFDLDAADPADLIDASDDTFVAAL--------EAVPWAIRSLTINKA 289
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFK----AIYNKPYTSSSQDV 356
P+L+ EH L+ + R+R A Y + V
Sbjct: 290 PVLLEPAATTDEH-----------ERRARLIAEAPQFRERVVQTMAARYPTKPDAEPIAV 338
Query: 357 DSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE 416
+ Q+++GF++ D++ + Q + F D RL +L R A LSE+E
Sbjct: 339 EKQIFNGFYSWADKERLKVFQGADWPQRQEIVATFDDSRLRQLGRRLVAFYAHDLLSEEE 398
Query: 417 KQD---WLEHRKKMLTRSRIEEYKNK--LQSLSGEYKGDEGKEGLINALYEYL 464
++ WL R + +R E K Q+++ + ++ + +L
Sbjct: 399 QRQYGEWLHGRWQAASRLETEWMTTKKARQAIAEMRESSNYDNLMLEEIEAFL 451
>gi|260577353|ref|ZP_05845324.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
gi|259020426|gb|EEW23751.1| Exodeoxyribonuclease I [Rhodobacter sp. SW2]
Length = 457
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 118/474 (24%), Positives = 201/474 (42%), Gaps = 35/474 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G A D+P QFA +R D +IE C+ A +P P+A+F+TG+T
Sbjct: 3 FVFYDLETTGISPAFDQPLQFAAIRTDDSLVEIER-VNLRCRIAPHIIPSPQALFVTGVT 61
Query: 65 PQKALRDGVVE-AEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
P + + + EF++ I + +G+N IRFD+ R FY+N + +
Sbjct: 62 PAQLVDPELPSLFEFTQTIMELTERWAPATWVGFNTIRFDEEVLRQAFYQNLQPNIYATQ 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN+R D+L + A++ + + WP+ D T+FKL LA ANG NAHDA DV
Sbjct: 122 LNGNNRLDILTAVYAVWCRNRGLMHWPTDDTDRTTFKLDRLAPANGFNAHNAHDALGDVE 181
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA-SRSNTALIA 241
AT+ + LI + P L+ + R+K + ++ ++ P+ V G R+
Sbjct: 182 ATIHIAGLIAKGDPALWSAILHNRDKQNVTAIL--ESFRPVELVLRFGGGPPRAYVGCFC 239
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
A + +GD V D L + + +S P I+ + NK P
Sbjct: 240 GTAAGNPTNAAFFDLE-AGDPEVLIKADDTALFEAVDSS--------PQIIRSIATNKVP 290
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRF----KAIYNKPYTSSSQDVD 357
L PI +H L + R R A Y + + V+
Sbjct: 291 SLFPIASPDPDH-----------LRKAAFIAANPAFRARVGQAMAARYVEDPDAPPPPVE 339
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEK 417
Q+Y GFFA DR ++ R + + +D RL +L R A + P +S E
Sbjct: 340 KQIYGGFFAKADRDLLADFQRADWRRRQEIANVLTDVRLRQLGRRLIAFHAPELMSSDEA 399
Query: 418 QDWLEHRKKMLTRSRIEE-----YKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
+ + + + + +++++ + + ++ + ++++
Sbjct: 400 KQFDAFLRDRWNAEEGPKTEWTTIASAMRAIAEQRALPGTDDAALDEIADFIRQ 453
>gi|297519534|ref|ZP_06937920.1| exonuclease I [Escherichia coli OP50]
Length = 213
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 128/205 (62%), Positives = 156/205 (76%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVY
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 183 ATLALVWLIREKKPKLFEYLYDYRN 207
AT+A+ L++ ++P+LF+YL+ +RN
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRN 213
>gi|226330550|ref|ZP_03806068.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198]
gi|225201345|gb|EEG83699.1| hypothetical protein PROPEN_04468 [Proteus penneri ATCC 35198]
Length = 274
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 121/273 (44%), Positives = 176/273 (64%), Gaps = 2/273 (0%)
Query: 198 LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCN 257
+F+Y ++ R+K +++ LIDI MTP+VHVSGMFGA+RSN +L+AP+AWHP +++VI C+
Sbjct: 1 MFDYFFNLRDKRKVQALIDIPAMTPIVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCD 60
Query: 258 LSGDMRVFQDLDSVQLAKRLFTSHDELK-GLVPVPIKEVHLNKCPILMPIDYCKKEHFER 316
LS D+ L S QL +RL+T EL PVPIK +H+NKCPI+ P + + + +R
Sbjct: 61 LSADISPLLTLTSDQLRERLYTPRSELAVDEPPVPIKLLHINKCPIVAPQNTLRPQDADR 120
Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIYNKP-YTSSSQDVDSQLYDGFFADVDRQIMDR 375
G+D CL N +L +R++ ++ + S DVDSQ+Y+GFF++ DR M+
Sbjct: 121 IGLDVDTCLNNQAILFSHPEIRNKVVELFAQQTPFVVSDDVDSQIYNGFFSENDRSAMEI 180
Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435
I T P+ L L+L F D R+ LFFRYRARN+P TL+ E+Q WL HRK+MLT ++ E
Sbjct: 181 IRSTQPQNLPALDLTFEDARMEPLFFRYRARNYPSTLNYDEQQRWLAHRKEMLTPEKLNE 240
Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
Y N +Q L+ +Y +E K + LY Y Q +
Sbjct: 241 YINTIQLLAEKYSDNEEKLKQLQELYLYAQDIA 273
>gi|254453670|ref|ZP_05067107.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
gi|198268076|gb|EDY92346.1| exodeoxyribonuclease I, putative [Octadecabacter antarcticus 238]
Length = 459
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 114/473 (24%), Positives = 196/473 (41%), Gaps = 33/473 (6%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F YD E G A D+P QFA + D ++ ++E C+ A +P P A+ +TG+
Sbjct: 2 TFAFYDLEITGLSPAFDQPLQFAAILTDDEFREVER-VNLRCRIAPHIIPSPWALAVTGV 60
Query: 64 TPQKALRDGVVE-AEFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P + L G+ EF++ I + I G+N+IRFD+ R FY+N + +
Sbjct: 61 RPAQLLDAGLPTLFEFTQEIGALIDRWSPAIWTGFNSIRFDEEVLRQAFYQNLSPNVYAT 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NGN+R+D+L + A Y PD + WP D G S KL LA ANG NAHDA DV
Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLVWPEDDTGRRSLKLDRLAPANGFNAHNAHDALGDV 180
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS-RSNTALI 240
AT+ + LI + P L+ L D K +++ +++ P V+ G RS +
Sbjct: 181 EATVHIARLIATRSPALWSELLDNAQKARVQA--KLESFRPYELVTHFGGGEPRSYVGCL 238
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
+ + + + D F + L + P I+ V NK
Sbjct: 239 CGYSQGNSAHAAFFDLD-AADPAEFVEASDEALFAAV--------DATPKIIRGVSTNKA 289
Query: 301 PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQL 360
P L+ EH R + LR + R + + + + V+ Q+
Sbjct: 290 PALLEHTAPSAEHLRRAAV---IAEAPAFRLRVGAAMAAR----FVEDPDAPPKPVERQI 342
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKE---- 416
Y F+++ D+Q++ + + +D RL +L R A + P L+ +E
Sbjct: 343 YGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLNLEETALF 402
Query: 417 ----KQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+ W + + +L+ L + + ++ + ++++
Sbjct: 403 NGFLLEKWSAPDAPETEWMTFRKAQAELEELRAAGAAEPHE---LDEIADFMK 452
>gi|330813552|ref|YP_004357791.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
gi|327486647|gb|AEA81052.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. IMCC9063]
Length = 473
Score = 366 bits (941), Expect = 4e-99, Method: Composition-based stats.
Identities = 117/484 (24%), Positives = 214/484 (44%), Gaps = 39/484 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++ YD+ET GR D+ Q V V+ ++++++ E C +P+P A+ +
Sbjct: 2 NYAFYDFETTGRSGTWDQIIQVGAVLVNAEFQELDRFEAK-CGLRPGLVPEPGALLVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
TP + + ++ Q F IGYN+I FD+ + R ++ D Y +
Sbjct: 61 TPDMLRKTNLSHYGLVDQMLQTFKKWTPAIFIGYNSIGFDEEFLRKTLFKTLNDPYLTQF 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN R D+L + R + + PD I+ P+ D G FKL LA NGIEH NAHDA DV
Sbjct: 121 -NGNKRGDILGLARTAHLYYPDCIKTPTSDKGNPVFKLDQLAPMNGIEHGNAHDAIGDVL 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + +I +K P +++ +K ++ ++ + + +G +R ++
Sbjct: 180 ATIGIAKIISDKAPAVWKASLMTTSKAEVNTIVQNEKLFCFNEY--FYGKARPY--VVTF 235
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+ +HP+Y +L D + ++ L K + S P I+ V NK PI
Sbjct: 236 LGFHPKYSW-PQCFDLKEDPNTYFNMSMEDLKKAMKKS--------PKIIRSVKNNKHPI 286
Query: 303 LMPIDYCKKEHFERW-GIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-----DV 356
+M + E+FE + + + +E L++ +++ I + DV
Sbjct: 287 IMNPKF--GENFEGYKQLGMAKLIERAELIKNNEEFKNKVARILEEEAQEKEDLDSQLDV 344
Query: 357 --DSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
+ +Y GF ++ D+ M ++ + + F D+R R P L
Sbjct: 345 QAEESIYSGGFASEQDKSTMKTFHQSDWKDKLLIADKFKDQRFNYFAKRLMYEENPSIL- 403
Query: 414 EKEKQDWLEHR---KKMLTR-----SRIEEYKNKLQSLSGEY--KGDEGKEGLINALYEY 463
K+ D HR K++L+ + I + N+L +L +Y + D + ++N L +
Sbjct: 404 PKDMHD-EIHRAIAKQILSTNDEKWNTIPKAYNELDNLRAKYEEENDTERLAMMNDLNNF 462
Query: 464 LQWV 467
L+ +
Sbjct: 463 LEEI 466
>gi|154252272|ref|YP_001413096.1| exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
gi|154156222|gb|ABS63439.1| Exodeoxyribonuclease I [Parvibaculum lavamentivorans DS-1]
Length = 468
Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats.
Identities = 111/474 (23%), Positives = 188/474 (39%), Gaps = 30/474 (6%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV +D ET G D+ FA +R D +I+ E + +P P A++ G+
Sbjct: 2 SFVFFDTETTGLRHGFDQIVHFAAIRTDADLNEIDRFEA-HSRLLPHVVPHPFALYTNGL 60
Query: 64 TPQKALRDGVV-EAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ + DG+ + I + S + +GYN+IRFD+ R F++ + +Y S
Sbjct: 61 SIGRLTDDGLPSHYVMVQTIRRKLLSWSPSIFVGYNSIRFDEEMLRQAFFQTLHPAYLTS 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++GN R D L +M A A SP + P G +F+L+ LA ANGIEH AHDA ADV
Sbjct: 121 -NHGNCRADALGLMTAAAALSPSCLLVPFGATGRPTFRLEQLASANGIEHTRAHDAMADV 179
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
ATL L + E+ +L++ + K + +D ++ L F ++ + A +
Sbjct: 180 LATLGLCRCVYERSSELWQRFVRFSKKATVADFVDSEDAFILTE----FFSNEAYHAPVV 235
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+ P + + L GD+ F + L L P PI+ +N P
Sbjct: 236 CLGRDPEQPNGRLCLRLDGDVGRFYTMSDEDLRVEL--------ARKPSPIRRFRINAAP 287
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYTSSSQDVDSQ 359
L + + + GID ++ + Y + + S+ V+ Q
Sbjct: 288 TLTALYDARDQMLN--GIDLDEVETRARRVKDDPTFCAHLISAYASIRGPHAPSRHVEEQ 345
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
+YD F D M+R + ++ ++ F D RL R L E+ +
Sbjct: 346 IYDRFPGPDDEARMERFHKVGWREVLSIVQSFEDERLRCFGLRLVYFEHRSVLPEEIRLR 405
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L + + +L G D L +Y +++
Sbjct: 406 VERELTDRLVEEESGGLTLRRALQETDALLGSDYTDTNGI-----LADYRAYLV 454
>gi|254510953|ref|ZP_05123020.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
gi|221534664|gb|EEE37652.1| exodeoxyribonuclease I [Rhodobacteraceae bacterium KLH11]
Length = 469
Score = 362 bits (931), Expect = 5e-98, Method: Composition-based stats.
Identities = 116/472 (24%), Positives = 201/472 (42%), Gaps = 32/472 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +D ET G A D+P QFAG+ D E++E ++ C+ + LP P A+ +TG++
Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDIR-CRLSPHILPAPWALAVTGVS 60
Query: 65 PQKALRDGVVEA-EFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
P + A EFS+ + GYNNI FD+ R +FY+N + + +
Sbjct: 61 PGMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQ 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+GN R D++ ++ A + + D + WP+ + G +FKL LA ANG N HDA ADV
Sbjct: 121 MDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVE 180
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + LIR++ P ++ R+KN ++ ++ + L+ FGA+ A
Sbjct: 181 ATINIAKLIRDRAPDVWVQSLRNRSKNNVQDIMQSGQVLTLIE---RFGATPPRAYRGAY 237
Query: 243 VAWHPRYKDSVIGCNLS-GDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+P ++++ +L D D+ +A + S P ++ V +N P
Sbjct: 238 AGQNPDNRNALALMDLDLVDPNTLDPTDASAIANAVSAS--------PKTVRTVAINNAP 289
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT--SSSQDVDSQ 359
L + ID L LR +L+ + + S V+ +
Sbjct: 290 NLFEV-----------PIDDSDLLNRAEDLRGNHDLQTALGNALAERFADRSEPDQVEQK 338
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
+Y GF++ D++ +++ + + + F DRRL L R N P LS +
Sbjct: 339 IYAGFYSTDDKKRLNQFEFASWAKRIEIAQAFEDRRLQWLASRLIYLNEPSLLSRYAQDY 398
Query: 420 WLEHRKKMLTRSRIEEYKNKLQ----SLSGEYKGDEGKEGLINALYEYLQWV 467
W + + ++ L+ + AL EY +
Sbjct: 399 WKDAIDQRWQNDDPNPEWTTIEHASRQLAEIADQGVLSIHDLQALKEYYSSL 450
>gi|241668749|ref|ZP_04756327.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877280|ref|ZP_05249990.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843301|gb|EET21715.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 482
Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats.
Identities = 132/502 (26%), Positives = 205/502 (40%), Gaps = 63/502 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPIATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDG--ATSFKLQDLALANGI-EHVNAHD 176
+ NG SR DL ++ Y F D ++WP ++G S KL++L N + AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQRKISLKLENLNTENNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM---------TPLVHVS 227
A DV T+ L +R PK++++L NK + N+ + VS
Sbjct: 182 AITDVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLNIGVEVGGIGYRQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG + + I + H YK+ I F LDS F E G
Sbjct: 242 GVFGFKNNFMSAILDIGQHRHYKNQEI----------FLRLDSYD-----FKDFIEEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + +NK P+++P R D N +R + F
Sbjct: 287 LEAEHWRLTVNKKWGDIPLILPAKT---RFVGRLPQDRLDLIKTNKEFIRSNPEIFANFV 343
Query: 343 A-IYNKPYTS-SSQDVDSQLY-DGFFADVDRQIMDRILRT----APEQLSTLNLPFSDRR 395
+ Y + D+D+ +Y F + D + D+ + + L+ L P+ D R
Sbjct: 344 DYVLEYKYPEIENVDIDAAIYQSDFMSAADERGCDKFHTSQIYQKAQMLNQLPKPYYD-R 402
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQS 442
+ R P ++ E QD+L +H+ K TR +E+ ++Q
Sbjct: 403 AVRIIGRLDFSKLPDK-AQMEFQDYLNKIVSLDNDELLIDHKGK--TRKTLEDIYQEMQD 459
Query: 443 LSGEYKGDEGKEGLINALYEYL 464
L E ++ L+ L EYL
Sbjct: 460 LRMNRDLTEEQQALLYELEEYL 481
>gi|332184270|gb|AEE26524.1| Exodeoxyribonuclease I [Francisella cf. novicida 3523]
Length = 482
Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats.
Identities = 128/502 (25%), Positives = 201/502 (40%), Gaps = 63/502 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTFLFYDLETTGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPIATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDG--ATSFKLQDLALANGI-EHVNAHD 176
+ NG SR DL ++ + F D ++WP ++G S KL++L N + AHD
Sbjct: 122 FKNGCSRADLFPIVTCYHLFCNDVLKWPKILDEEGQQKISLKLENLNTENNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---------LIDIQNMTPLVHVS 227
A DV T+ L ++ PK++++L NK I + VS
Sbjct: 182 AITDVIVTVELAKKLKIANPKMWQFLLTKFNKQNDENTLAQLDIGLEIGSVGYRQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG + + I + H YK+ I L LF+ E G
Sbjct: 242 GVFGFKNNFMSAILDIGQHRHYKNQEIFLRLDS---------------YLFSEFIEEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK P+++P R D N ++ + F
Sbjct: 287 LEAEHWRLTLNKKWGDIPLILPAKT---RFVGRLPQDRLDLIKSNKEFIKDNQEIFANFV 343
Query: 343 A-IYNKPYTS-SSQDVDSQLY-DGFFADVDRQIMDRIL----RTAPEQLSTLNLPFSDRR 395
+ Y + D+D+ +Y F + D + D+ R + L+ L + D R
Sbjct: 344 DYVLEYKYPEIENIDIDAAIYQSDFMSAADERGCDKFHSLPIRQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQS 442
+ R P ++ E QD+L +H+ K TR +E+ ++Q
Sbjct: 403 AVRIIGRLDFSKLPDK-AQMEFQDYLNKIVSLDNNELLIDHKGK--TRKTLEDIYQEMQD 459
Query: 443 LSGEYKGDEGKEGLINALYEYL 464
L E ++ L+ L EYL
Sbjct: 460 LRMNRNLTEEQQSLLYELEEYL 481
>gi|289677836|ref|ZP_06498726.1| exonuclease I [Pseudomonas syringae pv. syringae FF5]
Length = 295
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 105/260 (40%), Positives = 162/260 (62%), Gaps = 4/260 (1%)
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF 230
H AHDA +DV AT+AL LIREK+PKL++YL+ R+K ++++ + + M PLVH+SG F
Sbjct: 1 HGQAHDALSDVRATIALARLIREKQPKLYDYLFALRSKQKVQEQVRL--MQPLVHISGRF 58
Query: 231 GASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDEL-KGLVP 289
A+R+ ++ P+AWHP ++++I C+L D + L +RL+T HD L G +P
Sbjct: 59 SAARNYLGVVLPLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELP 118
Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKP 348
VP+K +H+N+CP++ P+ + E +R +D L ++ D+ A+Y K
Sbjct: 119 VPLKLLHINRCPVIAPLGVLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKD 178
Query: 349 YTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNF 408
+S+D + QLYDGF D DR++ +++ + PEQL+ PF D RLPEL FRYRARNF
Sbjct: 179 DFVASEDPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNF 238
Query: 409 PHTLSEKEKQDWLEHRKKML 428
P TLS +E+ W + ++ L
Sbjct: 239 PDTLSGEEQTRWRDFCQQRL 258
>gi|299132766|ref|ZP_07025961.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
gi|298592903|gb|EFI53103.1| Exodeoxyribonuclease I [Afipia sp. 1NLS2]
Length = 473
Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats.
Identities = 102/417 (24%), Positives = 171/417 (41%), Gaps = 24/417 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV +D ET G D+ FA +R D +I E + LP P A+ G+
Sbjct: 5 SFVFFDTETTGLKHGFDQIVHFAAIRTDANLNEIGRFEAR-SRLLPHVLPHPAALRTNGL 63
Query: 64 TPQKALRDGVV-EAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ L + + R I Q S + +GYN++RFD+ R+ ++ + +Y S
Sbjct: 64 PIGRLLDGSLPSHYDMVRSIRQRLLSWSPSIFLGYNSVRFDEEMLRHALFQTLHPAYLTS 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N NSR D+ ++ A A SP + P +G + F+L+ LALANG+ AHDA +D
Sbjct: 124 NHN-NSRADVWGLVMAAAAVSPACLNVPIGPEGRSIFRLEQLALANGVAQEQAHDALSDA 182
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
ATL L L+ ++ P+L++ + K + ++ ++ L F A+++ A +
Sbjct: 183 IATLELCRLVHQRSPELWQRFVRFSKKATVADFVEAEDGFMLTE----FFANQAYHAPVV 238
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+ P + NL+ D F + +L L P P++ + +N P
Sbjct: 239 CIGRDPDQSNGRFCLNLNRDADRFAAMTDDELRAEL--------AQKPCPVRRLRINAAP 290
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359
L + + G+D ++ L +R + Y + S S+ + +
Sbjct: 291 TLTAFYDAPEVMLD--GLDIDAVEARARRVKSDPALCNRLVSAYTSTREPRSPSRHAEER 348
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFR---YRARN-FPHTL 412
LYDGF D M + D RL R + AR+ P L
Sbjct: 349 LYDGFPGPQDEARMIEFHDADWTDRLAIVQSLDDERLRSFGLRLLYFEARSVLPEAL 405
>gi|167626316|ref|YP_001676816.1| exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596317|gb|ABZ86315.1| Exodeoxyribonuclease I [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 482
Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats.
Identities = 132/502 (26%), Positives = 204/502 (40%), Gaps = 63/502 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
F+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTFLFYDSETTGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPIATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A GV E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GVSEYQAIRKIHKIINTPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGAT--SFKLQDLALANGI-EHVNAHD 176
+ NG SR DL ++ Y F D ++WP ++G S KL++L N + AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNDVLKWPKVLDEEGQPKISLKLENLNTENNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR---KLIDIQ------NMTPLVHVS 227
A DV T+ L +R PK++++L NK +DI + VS
Sbjct: 182 AITDVIVTVELAKKLRIANPKMWQFLLAKFNKQNDENTLAQLDISVEVGGIGYRQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG + + I + H YK+ I F LDS F E G
Sbjct: 242 GVFGFKNNFMSAILDIGQHRHYKNQEI----------FLRLDSYD-----FKDFIEEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + +NK P+++P R D N +R + F
Sbjct: 287 LEAEHWRLTVNKKWGDIPLILPAKT---RFVGRLPQDRLDLIKTNKEFIRSNQEIFANFV 343
Query: 343 A-IYNKPYTS-SSQDVDSQLY-DGFFADVDRQIMDRILRT----APEQLSTLNLPFSDRR 395
+ Y + D+D+ +Y F + D + D+ + + L+ L + D R
Sbjct: 344 DYVLEYKYPEIENVDIDAAIYQSDFMSAADERGCDKFHTSQIYQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQS 442
+ R P ++ E QD+L +H+ K TR +E+ ++Q
Sbjct: 403 AVRIIGRLDFSKLPDK-AQMEFQDYLNKIVSLDNDELLIDHKGK--TRKTLEDIYQEMQD 459
Query: 443 LSGEYKGDEGKEGLINALYEYL 464
L E ++ L+ L EYL
Sbjct: 460 LRMNRDLTEEQQALLYELEEYL 481
>gi|226330549|ref|ZP_03806067.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
gi|225201344|gb|EEG83698.1| hypothetical protein PROPEN_04467 [Proteus penneri ATCC 35198]
Length = 204
Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats.
Identities = 121/190 (63%), Positives = 145/190 (76%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T+ F I+DYETFG ALDRPAQFAG+R D + IE V +CKP DDYLP PEAV IT
Sbjct: 7 TSTFYIHDYETFGTHPALDRPAQFAGIRTDMDFNIIEDPLVIYCKPNDDYLPHPEAVMIT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GITPQ A ++G++EAEF+R+IHQ FS PN+CI+GYNN+RFDD +RNI YRNFYD Y +S
Sbjct: 67 GITPQIAAKNGLIEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYS 126
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W GNSRWDLLDV+RA YA P+GI WP +DG SF+L+ L ANGI H NAHDA +DV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIVWPENEDGFPSFRLELLTKANGISHENAHDAMSDV 186
Query: 182 YATLALVWLI 191
YAT+A+ I
Sbjct: 187 YATIAMAKKI 196
>gi|254374578|ref|ZP_04990059.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
gi|151572297|gb|EDN37951.1| hypothetical protein FTDG_00751 [Francisella novicida GA99-3548]
Length = 482
Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats.
Identities = 125/503 (24%), Positives = 201/503 (39%), Gaps = 65/503 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDG--ATSFKLQDLALANGI-EHVNAHD 176
+ NG SR DL ++ Y F + + WP +DG TS KL++L N + AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +DI + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GIFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPH--------------TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ 441
+ R P +L E ++H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAKAQMEFQNYLNKIVSLDSDELL--IDHKGK--TRKTLEDIYQEIE 458
Query: 442 SLSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 459 DLRMNYDLTEEQQALLYELEEYL 481
>gi|332678483|gb|AEE87612.1| Exodeoxyribonuclease I [Francisella cf. novicida Fx1]
Length = 482
Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats.
Identities = 127/502 (25%), Positives = 204/502 (40%), Gaps = 63/502 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDFDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDG--ATSFKLQDLALANGI-EHVNAHD 176
+ NG SR DL ++ Y F + + WP +DG TS KL++L N + AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEDGQEKTSLKLENLNQNNSLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +DI + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDIGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GIFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQS 442
+ R P ++ E QD+L +H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAK-AQMEFQDYLNKIVSLDSDELLIDHKGK--TRKTLEDIYQEIED 459
Query: 443 LSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 460 LRMNYDLTEEQQALLYELEEYL 481
>gi|115524481|ref|YP_781392.1| exodeoxyribonuclease I [Rhodopseudomonas palustris BisA53]
gi|115518428|gb|ABJ06412.1| Exodeoxyribonuclease I subunit C [Rhodopseudomonas palustris
BisA53]
Length = 490
Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats.
Identities = 97/459 (21%), Positives = 176/459 (38%), Gaps = 25/459 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV +D ET G D+ FA +R D + + EV + +P P A+ ++
Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEVR-SRLLPHVVPHPSALRTNRLS 61
Query: 65 PQKALRDGVV-EAEFSRRIHQ-FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
++ + + E R I + + + +GYN+IRFD+ R+ ++ + +Y S
Sbjct: 62 IERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTS- 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+NGN R D L ++ A SP + P +G F+L LA N ++H AHDA ADV
Sbjct: 121 NNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVA 180
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
ATL L L+RE+ P+L++ + K + ++ ++ L F ++++ A +
Sbjct: 181 ATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESEDGFFLTE----FFSNQAYHAPVVC 236
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+ P + + L + L L P P++ + +N P
Sbjct: 237 LGPDPDQPNGRLCLRLDVPPEELALMPDEALQAYLSAK--------PSPVRRLRINASPT 288
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQL 360
L + G D + L++ R R ++Y + + S V+ Q+
Sbjct: 289 LTA--FHDAPDLMLNGADLDELEDRARRLKEDAAFRSRIISLYVAVRESFAPSLHVEGQI 346
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDG D + + + + ++ D RL R L K
Sbjct: 347 YDGLLGPDDERRIADFHEASWLEALSIVRDLDDERLRIFGRRLIYFGGRSVLPSDLKLIV 406
Query: 421 LEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKE 454
L + +++ + + L D
Sbjct: 407 ERDLTDRLVDNAAGNFTLQQALEETERLLNGEGIDADGI 445
>gi|262276726|ref|ZP_06054519.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
gi|262223829|gb|EEY74288.1| exodeoxyribonuclease I [alpha proteobacterium HIMB114]
Length = 473
Score = 339 bits (871), Expect = 5e-91, Method: Composition-based stats.
Identities = 106/481 (22%), Positives = 199/481 (41%), Gaps = 33/481 (6%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++V YD+ET GR D+ Q + V+ ++ ++ E C +P+P A+ +
Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEAR-CSLKPGTVPEPGALLVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
TP + + + + + F + IGYN++ FD+ + R F+++ D Y +
Sbjct: 61 TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYLTN- 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NGN R D+L ++R+ + + P+ ++ P + G FKL +A NGI H NAHDA DV
Sbjct: 120 TNGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVL 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
AT+ + +I +K P +++ +K + ++ + + + +G +R +++
Sbjct: 180 ATMGMAKIIADKAPSVWKASLMTMSKQDVGNIVQKEKLFCVNEY--FYGKARPF--VVSF 235
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
V HP Y + +L D + +D L + S P ++ V NK PI
Sbjct: 236 VCNHPVY-NWPQCFDLKNDPEDYFKMDMSTLKDAMKKS--------PKLLRSVKDNKHPI 286
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ-----DV- 356
+M +Y + I + E ++Q + AI + DV
Sbjct: 287 IMNPNYATNFDTYK-QIGISKLNERAEKIKQNEEFGKKVSAILQEEAQEKQDLDSQLDVQ 345
Query: 357 -DSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSE 414
+ +Y GF D + + + + + D R R P + +
Sbjct: 346 AEESIYSGGFPDDKTKMALKEFQKAEWKDRLVIADKMKDERYNYFAKRLMYEEAPDIMPK 405
Query: 415 K---EKQDWLEHRKKMLTRS---RIEEYKNKLQSLSGEYK--GDEGKEGLINALYEYLQW 466
E + R I + N+L SL +Y+ GDE + + N + +L+
Sbjct: 406 DLYNEIHRGIAKRILSTNDEKWNTIPKAYNELDSLRAKYEEDGDEERLSITNDINNFLEE 465
Query: 467 V 467
+
Sbjct: 466 I 466
>gi|27375179|ref|NP_766708.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
gi|27348315|dbj|BAC45333.1| exonuclease I [Bradyrhizobium japonicum USDA 110]
Length = 468
Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats.
Identities = 106/471 (22%), Positives = 184/471 (39%), Gaps = 28/471 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV +D ET G D+ FA VR D ++ E + LP P A+ G+
Sbjct: 2 SFVFFDTETTGLKRGFDQILHFAAVRTDENLNEVARFETR-SRLQPHVLPHPSALRTNGL 60
Query: 64 TPQKALRDGVV-EAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ + I + S +G+N+IRFD+ R+ ++ Y +Y S
Sbjct: 61 PIESLTDSSLPSHYTMVGDIRRTLISWSPAVFVGFNSIRFDEEMLRHALFQCLYPAYLTS 120
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++ N R D L ++ A A SP + P ++G +F+LQ LA ANG+ H AHDA +DV
Sbjct: 121 -NHRNCRADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLAAANGVAHARAHDAMSDV 179
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
ATL L L+ + P+L++ + NK + I++++ L F ++ +
Sbjct: 180 LATLELSRLVYRRSPELWQRFVRFSNKATVADFIEVEDGFVLTE----FFGGQAYHTSVV 235
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
+ P + + +L+ DM + ++L L P PI+ +N P
Sbjct: 236 CIGRDPDQANGRLCLSLNEDMGRLAAMSDLELQVHLTQK--------PSPIRRFRINAAP 287
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQ 359
L + + G + L++ T L R A Y + + S ++ +
Sbjct: 288 TLTAFYDAPEHMLD--GGSMGATGDRACLMKADTGLCARLVAAYMAAREPYALSPHLEER 345
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
+Y GF D + E + D RL R L E + +
Sbjct: 346 IYSGFPGPADEARIAAFHDARWEDRLAIVQGMEDERLRWFGLRLIYFEARSVLPEPTRLE 405
Query: 420 WLEHRKKMLTRS-----RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQ 465
+ +T I++ + + + GE+ + L+ YLQ
Sbjct: 406 VERYLTDQMTGDGSGCLTIDQAMAETERVLGEFASPDD---LLIQYRTYLQ 453
>gi|208779832|ref|ZP_03247176.1| exonuclease family protein [Francisella novicida FTG]
gi|208744287|gb|EDZ90587.1| exonuclease family protein [Francisella novicida FTG]
Length = 482
Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats.
Identities = 121/502 (24%), Positives = 195/502 (38%), Gaps = 63/502 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y F + + WP D K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGNRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GVFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQS 442
+ R P ++ E QD+L +H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAK-AQMEFQDYLNKIVSLDSDELLIDHKGK--TRKTLEDIYQEIED 459
Query: 443 LSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 460 LRMNYDLTEEQQALLYELEEYL 481
>gi|254373125|ref|ZP_04988614.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570852|gb|EDN36506.1| exodeoxyribonuclease I [Francisella novicida GA99-3549]
Length = 482
Score = 336 bits (863), Expect = 4e-90, Method: Composition-based stats.
Identities = 121/502 (24%), Positives = 195/502 (38%), Gaps = 63/502 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y F + + WP D K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GVFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQS 442
+ R P ++ E QD+L +H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAK-AQMEFQDYLNKIVSLDSDELLIDHKGK--TRKTLEDIYQEIED 459
Query: 443 LSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 460 LRMNYDLTEEQQALLYELEEYL 481
>gi|297519535|ref|ZP_06937921.1| exonuclease I [Escherichia coli OP50]
Length = 235
Score = 336 bits (861), Expect = 7e-90, Method: Composition-based stats.
Identities = 105/234 (44%), Positives = 157/234 (67%), Gaps = 1/234 (0%)
Query: 202 LYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGD 261
L+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+AWHP +++VI +L+GD
Sbjct: 1 LFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGD 60
Query: 262 MRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH 321
+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + + E +R GI+
Sbjct: 61 ISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 120
Query: 322 KRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTA 380
+ CL+NL +LR+ +R++ AI+ + + S +VD+QLY+GFF+D DR M +L T
Sbjct: 121 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETE 180
Query: 381 PEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIE 434
P L L++ F D+R+ +L F YRARNFP TL E+Q WLEHR+++ T ++
Sbjct: 181 PRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQ 234
>gi|118497767|ref|YP_898817.1| exodeoxyribonuclease I [Francisella tularensis subsp. novicida
U112]
gi|194323739|ref|ZP_03057515.1| exonuclease family protein [Francisella tularensis subsp. novicida
FTE]
gi|118423673|gb|ABK90063.1| exodeoxyribonuclease I [Francisella novicida U112]
gi|194322103|gb|EDX19585.1| exonuclease family protein [Francisella tularensis subsp. novicida
FTE]
Length = 482
Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats.
Identities = 121/502 (24%), Positives = 194/502 (38%), Gaps = 63/502 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y F + + WP D K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GVFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMNMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWL-------------EHRKKMLTRSRIEEYKNKLQS 442
+ R P ++ E QD+L +H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAK-AQMEFQDYLNKIVSLDSDELLIDHKGK--TRKTLEDIYQEIED 459
Query: 443 LSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 460 LRMNYDLTEEQQALLYELEEYL 481
>gi|134302180|ref|YP_001122149.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
gi|134049957|gb|ABO47028.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
Length = 482
Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats.
Identities = 119/503 (23%), Positives = 192/503 (38%), Gaps = 65/503 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y F + + WP D K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GIFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPH--------------TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ 441
+ R P +L E ++H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELL--IDHKGK--TRKTLEDIYQEIE 458
Query: 442 SLSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 459 DLRMNYDLTEEQQALLYELEEYL 481
>gi|254369135|ref|ZP_04985147.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
FSC022]
gi|157122085|gb|EDO66225.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
FSC022]
Length = 482
Score = 332 bits (853), Expect = 5e-89, Method: Composition-based stats.
Identities = 118/503 (23%), Positives = 191/503 (37%), Gaps = 65/503 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y F + + WP + K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GIFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPH--------------TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ 441
+ R P +L E ++H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELL--IDHKGK--TRKTLEDIYQEIE 458
Query: 442 SLSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 459 DLRMNYDLTEEQQALLYELEEYL 481
>gi|154705994|ref|YP_001424798.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
gi|154355280|gb|ABS76742.1| exodeoxyribonuclease I [Coxiella burnetii Dugway 5J108-111]
Length = 458
Score = 332 bits (852), Expect = 7e-89, Method: Composition-based stats.
Identities = 124/484 (25%), Positives = 205/484 (42%), Gaps = 47/484 (9%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQMLS-GKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ + ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMN-QEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
+FGA + A + + H YK+ + L D + + + ++
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRL--DREELLSTTVDSIPQTTYAIRKKMGEQ- 290
Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFKAIYNK 347
PI++P +H+ R + + E+ L + L Y
Sbjct: 291 ------------PIVLPAS----DHYLRLSEERLQLATESKKWLESHSQLFHHICDYYQN 334
Query: 348 PYTS--SSQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
+ D D+ LY+ GF + + R P + + L F + FR
Sbjct: 335 FTYPKVPNLDPDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLI 394
Query: 405 ARNFPHTLSEKEKQDWL---EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
R++P L + + L ++R + R E N+++SL E D+ + L++ L
Sbjct: 395 ERHYPDYLPAETQARSLGLCDYRGER--RLTRETAFNQIESLKQEKSLDQEQLRLLDELD 452
Query: 462 EYLQ 465
YL+
Sbjct: 453 HYLR 456
>gi|89256131|ref|YP_513493.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
LVS]
gi|115314604|ref|YP_763327.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
OSU18]
gi|156502153|ref|YP_001428218.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
gi|167009834|ref|ZP_02274765.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
FSC200]
gi|254367455|ref|ZP_04983481.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
257]
gi|290953267|ref|ZP_06557888.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
URFT1]
gi|295313509|ref|ZP_06804104.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
URFT1]
gi|89143962|emb|CAJ79183.1| Exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
LVS]
gi|115129503|gb|ABI82690.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
OSU18]
gi|134253271|gb|EBA52365.1| exodeoxyribonuclease I [Francisella tularensis subsp. holarctica
257]
gi|156252756|gb|ABU61262.1| exonuclease [Francisella tularensis subsp. holarctica FTNF002-00]
Length = 482
Score = 332 bits (852), Expect = 7e-89, Method: Composition-based stats.
Identities = 118/503 (23%), Positives = 191/503 (37%), Gaps = 65/503 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDELLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y F + + WP + K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAINEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GIFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFI 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPH--------------TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ 441
+ R P +L E ++H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELL--IDHKGK--TRKTLEDIYQEIE 458
Query: 442 SLSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 459 DLRMNYDLTEEQQALLYELEEYL 481
>gi|29654660|ref|NP_820352.1| exonuclease [Coxiella burnetii RSA 493]
gi|161831411|ref|YP_001597205.1| exonuclease [Coxiella burnetii RSA 331]
gi|165924153|ref|ZP_02219985.1| exonuclease [Coxiella burnetii RSA 334]
gi|29541928|gb|AAO90866.1| exodeoxyribonuclease I [Coxiella burnetii RSA 493]
gi|161763278|gb|ABX78920.1| exonuclease [Coxiella burnetii RSA 331]
gi|165916402|gb|EDR35006.1| exonuclease [Coxiella burnetii RSA 334]
Length = 458
Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 123/484 (25%), Positives = 204/484 (42%), Gaps = 47/484 (9%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQMLS-GKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ + ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMN-QEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
+FGA + A + + H YK+ + L D + + + ++
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRL--DREELLSTTVDSIPQTTYAIRKKMGEQ- 290
Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFKAIYNK 347
PI++P + + R + + E+ L + L Y
Sbjct: 291 ------------PIVLPAS----DRYLRLSEERLQLATESKKWLESHSQLFHHICDYYQN 334
Query: 348 PYTS--SSQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
+ D D+ LY+ GF + + R P + + L F + FR
Sbjct: 335 FTYPKVPNLDPDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLI 394
Query: 405 ARNFPHTLSEKEKQDWL---EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
R++P L + + L ++R + R E N+++SL E D+ + L++ L
Sbjct: 395 ERHYPDYLPAETQARSLGLCDYRGER--RLTRETAFNQIESLKQEKSLDQEQLRLLDELD 452
Query: 462 EYLQ 465
YL+
Sbjct: 453 HYLR 456
>gi|187931547|ref|YP_001891531.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712456|gb|ACD30753.1| exodeoxyribonuclease I [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 482
Score = 330 bits (847), Expect = 3e-88, Method: Composition-based stats.
Identities = 116/503 (23%), Positives = 191/503 (37%), Gaps = 65/503 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R + +IE FF K D +P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRTYLDFNEIERF-NFFVKLNPDTMPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ ++ G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQSNT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y + + WP D K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLLCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L +R PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GIFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPH--------------TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ 441
+ R P +L E ++H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELL--IDHKGK--TRKTLEDIYQEIE 458
Query: 442 SLSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 459 DLRMNYDLTEEQQALLYELEEYL 481
>gi|212212262|ref|YP_002303198.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
gi|212010672|gb|ACJ18053.1| exodeoxyribonuclease I [Coxiella burnetii CbuG_Q212]
Length = 458
Score = 329 bits (845), Expect = 4e-88, Method: Composition-based stats.
Identities = 124/484 (25%), Positives = 205/484 (42%), Gaps = 47/484 (9%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQMLS-GKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCRRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ + ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMN-QEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
+FGA + A + + H YK+ + L D + + + ++
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRL--DREELLSTTVDSIPQTTYAIRKKMGEQ- 290
Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFKAIYNK 347
PI++P + + R + + E+ L + L Y
Sbjct: 291 ------------PIVLPAS----DRYLRLSEERLQLATESKKWLESHSQLFHYICDYYQN 334
Query: 348 PYTS--SSQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
+ D D+ LY+ GF A + + R P + + L F + FR
Sbjct: 335 FTYPKVPNLDPDAALYEVGFPAPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLI 394
Query: 405 ARNFPHTLSEKEKQDWL---EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
R++P L + + L ++R + R E N+++SL E D+ + L++ L
Sbjct: 395 ERHYPDYLPAETQARSLGLCDYRGER--RLTRETAFNQIESLKQEKSLDQEQLRLLDELD 452
Query: 462 EYLQ 465
YL+
Sbjct: 453 HYLR 456
>gi|56708263|ref|YP_170159.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670734|ref|YP_667291.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC198]
gi|224457383|ref|ZP_03665856.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370748|ref|ZP_04986753.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC033]
gi|254875083|ref|ZP_05247793.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|56604755|emb|CAG45833.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110321067|emb|CAL09216.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC198]
gi|151568991|gb|EDN34645.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
FSC033]
gi|254841082|gb|EET19518.1| exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282159490|gb|ADA78881.1| Exodeoxyribonuclease I [Francisella tularensis subsp. tularensis
NE061598]
Length = 482
Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats.
Identities = 118/503 (23%), Positives = 192/503 (38%), Gaps = 65/503 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ YD ET G + + D+ QFA +R+D + +IE FF K D P P A
Sbjct: 4 NQTLLFYDLETSGINNSFDQVLQFAAIRIDLDFNEIERF-NFFVKLNPDTTPSPMATITH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ +A G+ E + R+IH+ + P T IGYN + FDD + R FY+N Y
Sbjct: 63 HISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQ 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ-----DLALANGIEHVNAHD 176
+ NG SR DL ++ Y F + + WP D K N AHD
Sbjct: 122 FKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHD 181
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK---LIDI------QNMTPLVHVS 227
A DV T+ L + PK++++L NK +D+ + + VS
Sbjct: 182 AITDVIVTVELAKKLIAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVS 241
Query: 228 GMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
G+FG+ + + I + H YK+ I L LF+ + G
Sbjct: 242 GIFGSKNNFISAILDLGQHRHYKNQEIFLRLDS---------------CLFSDFIDEFGS 286
Query: 288 VPVPIKEVHLNK----CPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFK 342
+ + LNK PI++P + + + N +R F
Sbjct: 287 LEAEHWRLTLNKKWGDIPIILPAKT---RFVGKLPQERIELIKANKEFIRNNPETFANFV 343
Query: 343 AIYNKPYTSSSQDVDSQ--LY-DGFFADVDRQIMDRILRTA----PEQLSTLNLPFSDRR 395
+ +++D+ +Y F + D + D+ A + L+ L + D R
Sbjct: 344 EYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYYD-R 402
Query: 396 LPELFFRYRARNFPH--------------TLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQ 441
+ R P +L E ++H+ K TR +E+ +++
Sbjct: 403 AVRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELL--IDHKGK--TRKTLEDIYQEIE 458
Query: 442 SLSGEYKGDEGKEGLINALYEYL 464
L Y E ++ L+ L EYL
Sbjct: 459 DLRMNYDLTEEQQALLYELEEYL 481
>gi|153209510|ref|ZP_01947415.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
gi|212218768|ref|YP_002305555.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
gi|120575335|gb|EAX31959.1| exonuclease [Coxiella burnetii 'MSU Goat Q177']
gi|212013030|gb|ACJ20410.1| exodeoxyribonuclease I [Coxiella burnetii CbuK_Q154]
Length = 458
Score = 328 bits (842), Expect = 9e-88, Method: Composition-based stats.
Identities = 123/484 (25%), Positives = 204/484 (42%), Gaps = 47/484 (9%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M+NH ++ YD ET G + D+ QFA +R D ++ E+ + D +P PEA
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ I + + L G E E R IHQ + P T +GYN + FDD + R FYRN
Sbjct: 60 MIIHRFSIDQMLS-GKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y +DN R DL + Y F P+ + WP D KL++L+ AN + AH+A
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNK----NQLRKL-IDIQNMTPLVH----VSG 228
DV A++AL L+ + ++ Y+ Y +K +L +L I IQ+ H + G
Sbjct: 175 MVDVEASVALAKLLMN-QEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQG 233
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLV 288
+FGA + A + + H YK+ + L D + + + ++
Sbjct: 234 VFGAQLAYQAPVICLGQHNHYKNQCLWLRL--DREELLSTTVDSIPQTTYAIRKKMGEQ- 290
Query: 289 PVPIKEVHLNKCPILMPIDYCKKEHFERWGIDH-KRCLENLTLLRQQTNLRDRFKAIYNK 347
PI++P + + R + + E+ L + L Y
Sbjct: 291 ------------PIVLPAS----DRYLRLSEERLQLATESKKWLESHSQLFHHIFDYYQN 334
Query: 348 PYTS--SSQDVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYR 404
+ D D+ LY+ GF + + R P + + L F + FR
Sbjct: 335 FTYPKVPNLDPDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLI 394
Query: 405 ARNFPHTLSEKEKQDWL---EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALY 461
R++P L + + L ++R + R E N+++SL E D+ + L++ L
Sbjct: 395 ERHYPDYLPAETQARSLGLCDYRGER--RLTRETAFNQIESLKQEKSLDQEQLRLLDELD 452
Query: 462 EYLQ 465
YL+
Sbjct: 453 HYLR 456
>gi|134082476|emb|CAK97283.1| unnamed protein product [Aspergillus niger]
Length = 298
Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats.
Identities = 111/175 (63%), Positives = 134/175 (76%)
Query: 33 QWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
++ I EVF+CKPADDYLP P AV ITGITPQ+A G EA F+ RIH F+VP TC
Sbjct: 124 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 183
Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
I+GYNN+RFDD +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP D
Sbjct: 184 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 243
Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
DG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L++ ++P+LF+YL+ +RN
Sbjct: 244 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 298
>gi|224370128|ref|YP_002604292.1| SbcB [Desulfobacterium autotrophicum HRM2]
gi|223692845|gb|ACN16128.1| SbcB [Desulfobacterium autotrophicum HRM2]
Length = 471
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 118/485 (24%), Positives = 204/485 (42%), Gaps = 49/485 (10%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ YD ET G + A D+ FA +R D + +I+ T + +D +P P A
Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIVIS-LRNDIVPSPGAFITHR 60
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+TP+ L+DG+ E + IH+ + P+T IGYN++ FDD + R FYRN D Y +
Sbjct: 61 LTPED-LKDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQY 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADV 181
N +R DLL + F PDGI WP DD S +L+ ++ N + + AHDA DV
Sbjct: 120 ANDCARMDLLPIATLYRIFKPDGIHWPVIDD-KASMRLELISEKNNLVQSGRAHDAMTDV 178
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN---------MTPLVHVSGMFGA 232
ATLAL + + +++ Y D+ +K + +D + + VS FG+
Sbjct: 179 EATLALARRL-SGQKRMWNYCLDFFDKKNDQARLDAVDEVFQSIFGRHRLCIMVSVSFGS 237
Query: 233 SRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPI 292
+ A + + Y + + L ++ + DS L + E K + +P
Sbjct: 238 DLTYMAPVLSLGHSTPYANQSLWLRLDKELVLPFKPDSGDGPFVLRKRYGEAK--IVLPS 295
Query: 293 KEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN--KPYT 350
+ N+ L P H+ C +N+ +L+ + + + K
Sbjct: 296 LDRFWNR---LTP-------------SQHQVCEKNIAMLKANQDEFQKLVIHHRSFKYPF 339
Query: 351 SSSQDVDSQLY-DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFP 409
D+D+ LY DGFF+ V+++ M R + R+ L R RNF
Sbjct: 340 VPDLDLDASLYQDGFFSSVEKKEMGVFHRAINNGEMGVCETLVSPRVKGLAQRIVLRNFY 399
Query: 410 HTLSEKEKQ---DWLEHRKKMLTRSRIEEY-----------KNKLQSLSGEYKGDEGKEG 455
+ + + ++ + L ++ Y +L S+ D ++
Sbjct: 400 EQAAPEVRAGHDRYMVKIRGPLGDDPVKGYRNDLKFTCDMAAQELASVRSAQGLDADQKA 459
Query: 456 LINAL 460
+++ L
Sbjct: 460 ILDWL 464
>gi|213859584|ref|ZP_03385288.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
Length = 228
Score = 310 bits (796), Expect = 2e-82, Method: Composition-based stats.
Identities = 97/228 (42%), Positives = 152/228 (66%), Gaps = 1/228 (0%)
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCP 301
P+AWHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP
Sbjct: 1 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 60
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQL 360
+L + + E +R GI+ + CL+NL +LR+ +RD+ AI+ + ++S +VD+QL
Sbjct: 61 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 120
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDW 420
YDGFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL + E+Q W
Sbjct: 121 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 180
Query: 421 LEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
LEHR+++LT +++Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 181 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 228
>gi|317035770|ref|XP_001396951.2| hypothetical protein ANI_1_1434134 [Aspergillus niger CBS 513.88]
Length = 177
Score = 309 bits (793), Expect = 5e-82, Method: Composition-based stats.
Identities = 110/174 (63%), Positives = 133/174 (76%)
Query: 33 QWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
++ I EVF+CKPADDYLP P AV ITGITPQ+A G EA F+ RIH F+VP TC
Sbjct: 4 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 63
Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
I+GYNN+RFDD +RNIFYRNFYD Y WSW + NSRWDLLDVMRA YA P+GI WP D
Sbjct: 64 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 123
Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYR 206
DG SF+L+ L ANGIEH NAHDA ADVYAT+A+ L++ ++P+LF+YL+ +R
Sbjct: 124 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHR 177
>gi|297171091|gb|ADI22103.1| exonuclease I [uncultured Planctomycetales bacterium HF0200_11L05]
Length = 468
Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats.
Identities = 99/408 (24%), Positives = 163/408 (39%), Gaps = 24/408 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
++ D ET G D+ + Q + D +E F K +P PEA + T
Sbjct: 10 YIFTDTETTGLDINFSQILQVGSLLTDENL-VVEKEHSLFSKLLPWIVPSPEAFLVHKKT 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ D E ++ + + N I YN RFD+ R FY Y
Sbjct: 69 -ECLNEDSPTHYEMMCQLREDWLNWSINKNPVFITYNGHRFDEELFRRQFYWCLLPPYIT 127
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ G +R DL+ + + F P+ + P ++ S KL D A AN I +NAHDA AD
Sbjct: 128 N-TGGATRLDLMYTFQLVANFFPNSLTVPMNEENGISLKLTDWAEANKISSINAHDAVAD 186
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALI 240
Y + L LI EK P+++ +K+ +LI + P + + SR T +
Sbjct: 187 CYLMVNLSRLIAEKVPEVWNSSLRGSSKDGNLRLIQSE---PFAMIGEVIRKSR-FTYPV 242
Query: 241 APVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKC 300
+ + ++ V +L D +L +L +++ + I++V +NK
Sbjct: 243 TFCGQNNKMQNEVAVADLYFDPDTLDELSDSELLEQISNAGTA--------IRKVRINKS 294
Query: 301 -PILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVD 357
PI+ +D + I ++ E +R T L+ R + N+ + V+
Sbjct: 295 LPIMNALDI--PSIHDTLDIPFEQLEERANKIRNNTKLQSRISELLTNNQIQYPPPKYVE 352
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRA 405
+Y GF + D M+R T + S L F D R EL R
Sbjct: 353 QSVYSGFPSKEDELWMERFHATPWQDRSKLIDGFEDSRYRELAERLIC 400
>gi|60326832|gb|AAX18929.1| putative exonuclease I [Pseudomonas fluorescens]
Length = 278
Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats.
Identities = 89/276 (32%), Positives = 157/276 (56%), Gaps = 12/276 (4%)
Query: 200 EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLS 259
++L+ R+K ++ + + + P+VH+SG F A+R +I P+AWHPR ++++I C+L
Sbjct: 1 DWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVILPLAWHPRNRNALIVCDLH 58
Query: 260 GDMRVFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
D + +LD+ L +RL+T ++L +G +PVP+K +H+N+CP++ P+ + E +R
Sbjct: 59 LDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCPVVAPLSVLRSEDQQRLH 118
Query: 319 IDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRIL 377
+D + L + RD+ IY ++S D + QLYDGF AD DR++ +++
Sbjct: 119 LDMELYQRRAVALSEAQEVWRDKLSVIYGPDEFAASDDPEQQLYDGFIADRDRRLCEQVR 178
Query: 378 RTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTR------S 431
P L+ PF D RLPEL FRYRARNFP TL++ E++ WL ++ L +
Sbjct: 179 EADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQERWLVFCQQRLLDPQLGAPN 238
Query: 432 RIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+E ++ L+ D + +++ +Y+Q +
Sbjct: 239 TLESFRQGLEQ--SLLSADPVQRQVLDQWQDYVQAL 272
>gi|254419026|ref|ZP_05032750.1| exonuclease family [Brevundimonas sp. BAL3]
gi|196185203|gb|EDX80179.1| exonuclease family [Brevundimonas sp. BAL3]
Length = 476
Score = 302 bits (774), Expect = 9e-80, Method: Composition-based stats.
Identities = 92/403 (22%), Positives = 161/403 (39%), Gaps = 21/403 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV YD ET G D+ QFA + D +++ E+ C+ +P P+A+ ++
Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFELR-CRLQPHVVPHPKAMLANRLS 61
Query: 65 PQKALRDGVV-EAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
++ + + R I + S IGYN+IRFD+ R+ F++N + +Y S
Sbjct: 62 IERLTDLSLPSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYLTS- 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
G R D + ++ A + + P DG +F+L+ +A ANG+ AHDA AD
Sbjct: 121 TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNVDAAHDAMADAQ 180
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
TLAL + + P+++ NK + L+ + + L G + R ++A
Sbjct: 181 MTLALCRRVASEAPEIWSRAIRTSNKAAVADLVASEPLFILTEFYGFEASHR----VVAC 236
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPI 302
+ + + +L+ D L + LA + P++ + N P
Sbjct: 237 LGPEAGNPNGRLCWDLASDPAEAVQLQTDDLAALISQREG--------PLRRLKTNAAPA 288
Query: 303 LMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS--QDVDSQL 360
+ + + E + D L+ L R + +S V+ QL
Sbjct: 289 IA-MSWDAPEDWALG--DVDEAERRAEWLQANPELSSRIIEAQAARWANSPLSPHVELQL 345
Query: 361 YDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRY 403
YD F D D ++M + + F+D RL R
Sbjct: 346 YDRFPDDDDLRLMADFHGAPKIRQREIVDSFADVRLRTFGRRL 388
>gi|162148670|ref|YP_001603131.1| exodeoxyribonuclease I [Gluconacetobacter diazotrophicus PAl 5]
gi|161787247|emb|CAP56840.1| putative exodeoxyribonuclease I [Gluconacetobacter diazotrophicus
PAl 5]
Length = 437
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 82/375 (21%), Positives = 150/375 (40%), Gaps = 20/375 (5%)
Query: 35 EKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV-EAEFSRRIHQ-FFSVPNTC 92
++ E + LP P A+ G++ + + I + S
Sbjct: 2 NEVARFEAR-SRLQPHVLPHPSALRTNGLSIESLTDTNLPSHYAMVGDIRRILMSWSPAV 60
Query: 93 IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD 152
+G+N+IRFD+ R+ ++ Y +Y S ++ N R D L ++ A A SP + P +
Sbjct: 61 FVGFNSIRFDEEMLRHALFQCLYPAYLTS-NHRNCRADALSLVMAADAVSPAQLVVPVSE 119
Query: 153 DGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR 212
+G +F+LQ LA ANG+ H AHDA +DV AT+ L L+ ++ P L++ + NK +
Sbjct: 120 EGRRTFRLQQLAAANGLVHARAHDAMSDVLATIELCRLVHQRSPDLWQRFVRFSNKATVS 179
Query: 213 KLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQ 272
+D ++ L F ++ A + + P + + +L D+ + V+
Sbjct: 180 DFVDAEDGFVLTE----FYGGQAYHAPVVCIGVDPDQANGRLCLSLYHDVGQLARMSDVE 235
Query: 273 LAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLR 332
L L P PI+ +N P L + + I + ++
Sbjct: 236 LQAHL--------AQKPSPIRRFRINAAPTLTAFFDAPEHMLDGGSIG--HIEDQARRVK 285
Query: 333 QQTNLRDRFKAIY--NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLP 390
+L R A Y + S ++ ++Y+GF D M+ + + ++
Sbjct: 286 ADADLCTRLVAAYIAAREPYPLSPHLEERIYNGFPGPDDEGRMNAFHQVSWPDRLSIVQS 345
Query: 391 FSDRRLPELFFRYRA 405
D RL R
Sbjct: 346 LEDERLRWFGLRLVY 360
>gi|307069516|ref|YP_003877993.1| putative exonuclease I [Candidatus Zinderia insecticola CARI]
gi|306482776|gb|ADM89647.1| putative exonuclease I [Candidatus Zinderia insecticola CARI]
Length = 471
Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats.
Identities = 113/472 (23%), Positives = 220/472 (46%), Gaps = 19/472 (4%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F+ YDYETF + P+QFA +R + + I+ ++ +CKP ++P P+++ + I
Sbjct: 5 NFLWYDYETFNLNKNFTFPSQFASIRTNLNLKIIKKYKIIYCKPDGSFMPCPKSILLNKI 64
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
PQ + G+ E +F+ +I++ P T IGYNNI FDD +R +F+RN + Y W
Sbjct: 65 LPQYCEKYGIKEYKFANKINKIMLKPYTINIGYNNINFDDIITRFLFWRNLLNPYEREWK 124
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N S +D ++++ IY + + ++W + + SFKL D++ NG + H+A DV A
Sbjct: 125 NKCSTYDFFNIIKIIYFINYNSLKWFKKKNKKISFKLSDISKINGYLNKFFHNALFDVNA 184
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
TL +I++K KLF RNK + K I + +++S + ++ P+
Sbjct: 185 TLFCAKIIKKKNFKLFYKFIKLRNKKNIIKNI-LFKKKVFLYLSNKYPFFEKEIFILLPL 243
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
+ K+ +I N++ + + ++ ++ + PI + N IL
Sbjct: 244 FIDNKNKNKLICLNINS-NFNNFFDFKKKYNFKKINNYIKIININKYPI--IFFNIKKIL 300
Query: 304 MPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY-TSSSQDVDSQLYD 362
I++ I+ +N+T + L +N Y +++ LY+
Sbjct: 301 KKINF---------KINFNLIKKNITKINNNIKLILNIYKKFNYNYKYKKILNINFDLYN 351
Query: 363 GFF-ADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
FF + D+ + I + ++ F + + L F Y+ + + +S EK+ W+
Sbjct: 352 NFFISLNDKYNIKIIKKLNINKIHNKKFYFYNNNIKILCFFYKLKKYKKYISNFEKKIWI 411
Query: 422 EHRKKMLTRSRIEE--YKNKLQSLSGEYK--GDEGKEGLINALYEYLQWVIP 469
++ K L ++ E + KL + +Y ++ K+ ++ L Y + + P
Sbjct: 412 KYCKINLLKNYNNELNFFEKLFYIKKKYLKCSNKYKKKILYFLINYARKINP 463
>gi|289677835|ref|ZP_06498725.1| exonuclease I [Pseudomonas syringae pv. syringae FF5]
Length = 166
Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats.
Identities = 80/166 (48%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
W GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L A
Sbjct: 121 EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAA 165
>gi|254455766|ref|ZP_05069195.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
gi|207082768|gb|EDZ60194.1| exodeoxyribonuclease I [Candidatus Pelagibacter sp. HTCC7211]
Length = 481
Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats.
Identities = 101/490 (20%), Positives = 196/490 (40%), Gaps = 51/490 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET + G+ +D ++++E C+ D +P A+ I
Sbjct: 3 YVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSAR-CRMPQDRVPSATALCINKSN 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + E ++ F + +GY++I FDD R F+++ Y +
Sbjct: 62 VDLLTKGNLSHYEMLSQVENKFKEWSPATFLGYSSINFDDEVIRKEFFKSLRKPYLTN-T 120
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GN R D L++++A +A D ++ G S KL+ LA NG E AH A D
Sbjct: 121 EGNVRHDALNIVKAAFAIDDDILKTELNAKGNKSMKLESLARLNGFESAGAHSALFDTEL 180
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPV 243
T+ ++ LI++K+P ++ +K + LI +N+ L + +S L AP+
Sbjct: 181 TVKVLDLIKKKQPDIWTEYLKTSSKVVVENLIKQENIITLNE----YFYGKSYLYLCAPL 236
Query: 244 ----AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNK 299
HP YK + +L D+ Q L+ L K + S P ++ V NK
Sbjct: 237 HPNFCSHPVYKWGQVV-DLKADIEAIQKLNYEDLKKEMKKS--------PKFLRTVKSNK 287
Query: 300 CPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQT----NLRDRFKAIYNKPYTSSSQ- 354
PI++ + K + +D + L++ ++ + + + +SSQ
Sbjct: 288 APIILDKSFALKVDPYK-KLDSSLINKRAELVKTNEKFSKDISNILREAAEEKIETSSQE 346
Query: 355 --DVDSQLYD-GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPE----LFFRYRARN 407
+ + +Y GF + D+ + + + ++ L F D RL L F
Sbjct: 347 DIEPEESIYSGGFTSAKDQALFPKFHNSNWKEKFALLDKFEDERLITFGHGLIFN----E 402
Query: 408 FPHTLSEKEKQDWLEHR--KKMLTRS-----RIEEYKNKLQSLSGEYKGD------EGKE 454
P L KE ++ R ++L+ + + + ++ + + K
Sbjct: 403 APEIL-PKEIHKKIKRRIASRILSTNKEKWWTVSAFYSECDEIRENEDKMFSFKTVDEKL 461
Query: 455 GLINALYEYL 464
++ + EY+
Sbjct: 462 KFLDGINEYV 471
>gi|119713146|gb|ABL97215.1| exodeoxyribonuclease I [uncultured marine bacterium EB0_49D07]
Length = 469
Score = 275 bits (705), Expect = 9e-72, Method: Composition-based stats.
Identities = 95/480 (19%), Positives = 182/480 (37%), Gaps = 33/480 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++++ + YD ET G + Q ++ +R +I + C P +P P A+
Sbjct: 3 VSSNLIFYDTETTGLLKDFSQILQCGSIQTNRSL-EILHEQNLGCAPLPWAIPYPMAMVT 61
Query: 61 TGITPQKALRDGVVEAEFSR----RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
T V E R + Q+ I +N + +D+ R FY N ++
Sbjct: 62 NKKT--NLFHSNVSHYELMRDLNRQWRQWTIDEPAVFITFNGMAYDEELVRRQFYWNLFE 119
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEHVNAH 175
SY + NGN R D+L +M + AFSPD + P D G S K D+A ANGIE +AH
Sbjct: 120 SYLTN-TNGNGRLDILLMMNNVAAFSPDVLNIPLFDGGPGISLKQADIAEANGIEIGDAH 178
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
DA AD + L+ I KKP+L ++ K ++ ++ L V
Sbjct: 179 DAIADCKLMIGLLEKINAKKPELIDFFLSISTKPGIQAAVEHPGFLALGEVFRR----EI 234
Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV 295
+ P + + ++ +LS + ++D+ ++ + P K+
Sbjct: 235 FKYPVVPCG--SKAPNDLMFFDLSFEPEEIFEMDTQEIYSLVQKPGKS------GPFKKY 286
Query: 296 HLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYT---SS 352
+NK + P + + ID + + +R+ T+ + +
Sbjct: 287 GINKTIPVCPSSMIDNKDI--FDIDFEVLEKRAAQVRENTDFQALVSQAMADKIDNWNNE 344
Query: 353 SQDVDSQLY-DGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
++ +Y GF + D+++M R + E+ + +D R R + +P
Sbjct: 345 YDHIEQMIYAGGFPSKQDKELMADFHRIDSAEERIKICRNITDERHRLFAERLICQFYPQ 404
Query: 411 TLSEKEKQDWLEHRKKMLTR----SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQW 466
E + + L + + +L+ L + + ++ ++L
Sbjct: 405 EAPEDMMNRYQSLITQRLNEDGPWGSMSKVMTELEKLLEK-DNSTETQTILEDTKKFLTQ 463
>gi|91762381|ref|ZP_01264346.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
gi|91718183|gb|EAS84833.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1002]
Length = 475
Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats.
Identities = 91/495 (18%), Positives = 179/495 (36%), Gaps = 59/495 (11%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ I+D E+ + + + G+ VD +++++ F C+ + +P A+ +
Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRF-NFRCRLPEGEVPQAMALIVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + + + ++ F + +G++NI FDD RN F+R Y +
Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAIFMGWSNIGFDDEMIRNEFFRGIRYPYITN- 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N R D L++ R +A I+ + G KL+ LA NG E AH A D
Sbjct: 120 ATPNKRHDGLNIARGAHAVDESVIKTETNAKGNAVMKLESLARMNGFESSGAHSALFDAE 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
T+ ++ LI++ +P+ ++ NK+ + + M L FG ++ ++AP
Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYH--FG--KNYRFVVAP 235
Query: 243 V----AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
+ HP Y+ +L D D+ +L + ++ + N
Sbjct: 236 LHPKHCIHPIYQWG-QAFDLKIDPIPLFDMSISELKSAIKKLKF---------LRTIRSN 285
Query: 299 KCPILMPIDY-CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY---NKPYTSSSQ 354
K PI++ Y + E + +D E L+ +
Sbjct: 286 KAPIILDASYGLQVEPYS--NLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFDS 343
Query: 355 DVD----SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
VD +Y F D + + + + L F D R+ + + P
Sbjct: 344 QVDLLAEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESPE 403
Query: 411 TLSE----------------KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY--KGDEG 452
TL EK+ W +E+ + +L Y + DE
Sbjct: 404 TLPPDMFKTIKRGIAERILSDEKEKWW----------TCKEFYFECDNLRDRYTNEKDEK 453
Query: 453 KEGLINALYEYLQWV 467
K ++ + E+++ +
Sbjct: 454 KLKFLDEINEFVEGI 468
>gi|71083189|ref|YP_265908.1| exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
gi|71062302|gb|AAZ21305.1| Exodeoxyribonuclease I [Candidatus Pelagibacter ubique HTCC1062]
Length = 475
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 90/495 (18%), Positives = 179/495 (36%), Gaps = 59/495 (11%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ I+D E+ + + + G+ VD +++++ F C+ + +P A+ +
Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRF-NFRCRLPEGEVPQAMALIVNKT 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + + + ++ F + +G++NI FDD RN F+R Y +
Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPYITN- 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N R D L+++R +A ++ G KL+ LA NG E AH A D
Sbjct: 120 ATPNKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNGFESSGAHSALFDAE 179
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
T+ ++ LI++ +P+ ++ NK+ + + M L FG ++ ++AP
Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYH--FG--KNYRFVVAP 235
Query: 243 V----AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLN 298
+ HP Y+ +L D D+ +L + ++ + N
Sbjct: 236 LHPKHCIHPIYQWG-QAFDLKIDPIPLFDMSISELKSAIKKLKF---------LRTIRSN 285
Query: 299 KCPILMPIDY-CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY---NKPYTSSSQ 354
K PI++ Y + E + +D E L+ +
Sbjct: 286 KAPIILDASYGLQVEPYS--NLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFDS 343
Query: 355 DVD----SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH 410
VD +Y F D + + + + L F D R+ + + P
Sbjct: 344 QVDLLAEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESPE 403
Query: 411 TLSE----------------KEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEY--KGDEG 452
TL EK+ W +E+ + +L Y + DE
Sbjct: 404 TLPPDMFKTIKRGIAERILSDEKEKWW----------TCKEFYFECDNLRDRYTNEKDEK 453
Query: 453 KEGLINALYEYLQWV 467
K ++ + E+++ +
Sbjct: 454 KLKFLDEINEFVEGI 468
>gi|153872365|ref|ZP_02001281.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
gi|152071166|gb|EDN68716.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
Length = 312
Score = 272 bits (697), Expect = 7e-71, Method: Composition-based stats.
Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 17/272 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M N ++ YD ET G + + QFA +R D Q+ +IE ++ K D +P P+A
Sbjct: 1 MNNTYLFYDIETTGLNKTFAQILQFAAIRTDMQFNEIERHDILI-KLRPDVIPSPKATIT 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
I+ ++++ G+ E E +IH+ + T +GYN FDD + R F+RN Y
Sbjct: 60 HRISIAQSMQ-GLCEFEAIMQIHRLMNQSGTISLGYNTSSFDDEFLRFCFHRNLLPPYTH 118
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +G R DLL + Y + + + WP DG + +L+ L+ N + AH+A
Sbjct: 119 QYKDGCRRSDLLPITIMYYLYKKEVLENWPE-IDGKPTMRLEKLSEVNQLAIGQAHNAIV 177
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH-----------VSG 228
DV AT+ L + K+PK++ YL Y +K +K I+ + H +
Sbjct: 178 DVEATVELARRLF-KEPKMWGYLDGYFDKTTDKKK-RIEELPIAFHSIACSNRMGLMIDN 235
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSG 260
+G++ + + YK+ + L
Sbjct: 236 KYGSANQYQVPVLLIGHSIPYKNQTLWLRLDN 267
>gi|226490305|emb|CAQ42995.1| exonuclease [Escherichia coli]
Length = 156
Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats.
Identities = 95/149 (63%), Positives = 110/149 (73%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITPQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RN+FYRNFYD Y WSW
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSR 151
+ NSRWDLLDVMRA YA P+GI WP
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPEN 156
>gi|330959582|gb|EGH59842.1| putative exodeoxyribonuclease [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 465
Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats.
Identities = 92/446 (20%), Positives = 162/446 (36%), Gaps = 33/446 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YD T G+ A + ++ + + + D D EA
Sbjct: 1 MPVAIHFYDAITAGKSPAEGQIVRYHSLICEGS--ETPQFLEMMVSLRSDVHVDLEAAAN 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ + L G E E ++ +H F+ PN IG N D + R+ FYRN +
Sbjct: 59 SELGSMDLLS-GHSELECAKTVHDHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLL-PFPC 116
Query: 121 SWDNGNSRW-DLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALANGIEHVNA 174
GNS + DL ++RAI+ PD W P+ F + ++ G V
Sbjct: 117 VGLPGNSHYLDLETMLRAIHILRPDEYPWADSPAPANTHSFHHFLMWGAKVSGGNRAVRL 176
Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI--------DIQNMTPLVHV 226
+ D +A+ PKL + + + ++ + D+++ TP+ V
Sbjct: 177 RELLEDTHASC----------PKLVGHAIKHSSIESIKSALGLDKGEVSDLESTTPVYLV 226
Query: 227 SGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG 286
+ + L PV Y D + +L D+ + + G
Sbjct: 227 HQSLPSPKGFL-LGLPVGVDITYPDILYVADLESDLSQLCNPSVPTYQGFVRNPTSNPNG 285
Query: 287 LVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346
P+ V L++ P P+ + R ID + +R T L R K +
Sbjct: 286 ----PLVRVSLSRFPFCAPLSAIRPADASRLSIDIGLVKRRIAQIRSATFLPSRLKEVPV 341
Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR 406
S DV +++ G F+ D+ +M + +T + L++ SD R EL R
Sbjct: 342 LQLASQPSDVFHRMWAGDFSLKDQALMRELHQTPMGKWLNLSVGASDGRFHELVVRLLGG 401
Query: 407 NFPHTLSEKEKQDWLEHRKKMLTRSR 432
P LS ++ E+ + L+++
Sbjct: 402 IAPEILSSGQRSQVDEYAQSRLSKNS 427
>gi|146344350|ref|YP_001202206.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25]
gi|146188162|emb|CAM96493.1| putative exodeoxyribonuclease [Pseudomonas fluorescens SBW25]
Length = 465
Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats.
Identities = 92/466 (19%), Positives = 163/466 (34%), Gaps = 35/466 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M YD T G+ A + ++ + + D D EA
Sbjct: 1 MPLAIHFYDAITAGKSPAEGQIVRYDSLMCEESLTP--QVMEMMVGLRSDVHVDLEAAAN 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ + L G E E +R +H+ F+ PN IG N D + R+ FYRN +
Sbjct: 59 SELGSMDLLS-GHSELECARTVHRHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLL-PFPC 116
Query: 121 SWDNGNSRW-DLLDVMRAIYAFSPDGIQW-----PSRDDGATSFKLQDLALANGIEHVNA 174
GNS + DL ++RAI PD W P+ F + ++ V
Sbjct: 117 IGLPGNSYYLDLETMLRAINILRPDEYPWADSPDPTNTQSFHHFLMWGANVSGENRAVRL 176
Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI--------DIQNMTPLVHV 226
D AD +A+ PKL + + + ++ + D+++ TP+ V
Sbjct: 177 RDLLADTHASC----------PKLVGHALKHSSLQSIKSALGLEQGEVSDLESATPVYLV 226
Query: 227 SGMFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKG 286
A + L PV Y D + +L D+ + + G
Sbjct: 227 HQSLQAPKGFI-LGLPVGVDITYPDILYVADLESDISQLCNPAITSYQSFVRNPSSNPNG 285
Query: 287 LVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYN 346
P+ + L++ P P+ + R ID + LR T L R K
Sbjct: 286 ----PLVRISLSRFPFCAPLSAIRPADAARLSIDIGLVKRRIAQLRSATLLPSRLKETPV 341
Query: 347 KPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRAR 406
+S DV +++ G F+ D+ +M + + + L + SD R+ EL R
Sbjct: 342 LHLSSQPSDVFHRMWAGDFSPKDQVLMQELHQAPMGEWLNLAVGASDGRIYELVVRLLGG 401
Query: 407 NFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEG 452
P L+ ++ + + + +++ + L + +
Sbjct: 402 IAPEILTSDQRSEVDGYTQSRFSKNSAPPLW--VAELLKQAQDGNE 445
>gi|213609520|ref|ZP_03369346.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
Length = 187
Score = 250 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 1/187 (0%)
Query: 261 DMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGID 320
D+ +LDS L +RL+T+ +L VP+K VH+NKCP+L + + E +R GI+
Sbjct: 1 DISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRPEDADRLGIN 60
Query: 321 HKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDRILRT 379
+ CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+D DR M +L T
Sbjct: 61 RQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQLYDGFFSDADRAAMKIVLET 120
Query: 380 APEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNK 439
P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT +++Y N+
Sbjct: 121 EPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANE 180
Query: 440 LQSLSGE 446
LQ LS +
Sbjct: 181 LQMLSQQ 187
>gi|124008030|ref|ZP_01692729.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134]
gi|123986444|gb|EAY26250.1| exodeoxyribonuclease I, putative [Microscilla marina ATCC 23134]
Length = 487
Score = 239 bits (611), Expect = 7e-61, Method: Composition-based stats.
Identities = 81/416 (19%), Positives = 142/416 (34%), Gaps = 34/416 (8%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ V YD + G + D+ + D + +E+ + K D +P PEA+
Sbjct: 20 NKNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLLETHHIEI-KKRPDVVPSPEALIAN 78
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P L G E E R IH+ F+ P++ +GY N+ DD R FYRN Y
Sbjct: 79 NWLPSD-LAKGSTEYEAMRHIHELFNTPHSYNVGYGNLNNDDLLVRFGFYRNGLTPYTHQ 137
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W R DL ++ Y +P+ + + G S +L D+A ANG+ +
Sbjct: 138 WQRSCRRVDLRTIVTLYYLQAPNALVFSKNAAGKVSLELDDIAQANGL---TVGKGATNA 194
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-----LVHVSGMFGASRSN 236
+ L L+ P L+E + +K + + + + V GA
Sbjct: 195 QTIMELAKLLHNANPMLWEQALGFFDKKEDQNRVKAAQGQIEGVNGALLVDAQLGADAGF 254
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVH 296
+ + + V D L++ L R + +L
Sbjct: 255 QQPVHVLGQVGKDVHYVPL-----DDPDLSTLNTKNLESRFWVQKKKLTDEK-------- 301
Query: 297 LNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDV 356
+L+ + F+ N + NL + + +V
Sbjct: 302 -----LLLNWKHRDPAVFDAAR--GALIKRNAAFVANNPNLMQQLGEYVAGKSFAHRNNV 354
Query: 357 --DSQLY-DGFFADVDRQIMDRILRTA-PEQLSTLNLPFSDRRLPELFFRYRARNF 408
D+QLY GF+A +++ ++ + +R + R RNF
Sbjct: 355 DLDAQLYQGGFWATNEKRFFAEFHEAPNAQEKMQVVNTAPTQRTAAIGQRILYRNF 410
>gi|330937753|gb|EGH41635.1| exonuclease I [Pseudomonas syringae pv. pisi str. 1704B]
Length = 136
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 65/136 (47%), Positives = 79/136 (58%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNSRWDLLDVMR 136
W GNSRWDL+DV+R
Sbjct: 121 EWQGGNSRWDLIDVLR 136
>gi|257486438|ref|ZP_05640479.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 127
Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats.
Identities = 58/127 (45%), Positives = 71/127 (55%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDNGNS 127
W GNS
Sbjct: 121 EWQGGNS 127
>gi|330888492|gb|EGH21153.1| exonuclease I [Pseudomonas syringae pv. mori str. 301020]
Length = 124
Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats.
Identities = 55/124 (44%), Positives = 68/124 (54%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ YDYET G + DR Q AG+R D + +I C+ +DD LP P A I
Sbjct: 1 MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP G+ EA+F R+H S P TC GYN +RFDD +R FYRNF+D Y
Sbjct: 61 TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR 120
Query: 121 SWDN 124
W
Sbjct: 121 EWQG 124
>gi|145629536|ref|ZP_01785334.1| exonuclease I [Haemophilus influenzae 22.1-21]
gi|144978379|gb|EDJ88143.1| exonuclease I [Haemophilus influenzae 22.1-21]
Length = 175
Score = 211 bits (539), Expect = 2e-52, Method: Composition-based stats.
Identities = 64/171 (37%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 295 VHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQ 354
+H+NKCPIL P E R GID + CL+NL LR ++R++ I+N+ +S
Sbjct: 1 MHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN 60
Query: 355 D-VDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLS 413
D V+++LY+GFF++ D+ M + E+LS L F D+R+ EL F YRAR+F TL+
Sbjct: 61 DNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLT 120
Query: 414 EKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
E+ W ++R+ L +S +E +++ LQ L+ E+ + K L+ +YEY
Sbjct: 121 RAEQIKWKKYRQNKLEKSAVE-FESSLQRLAEEHSDNSEKLSLLQQVYEYG 170
>gi|330860011|emb|CBX70338.1| hypothetical protein YEW_LE47370 [Yersinia enterocolitica W22703]
Length = 120
Score = 206 bits (526), Expect = 4e-51, Method: Composition-based stats.
Identities = 79/113 (69%), Positives = 88/113 (77%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F I+DYETFG+ ALDRPAQFAGVR D + IE V +C PADDYLP PEAV ITG
Sbjct: 8 PTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
ITPQ AL +GV EAEF+R+IHQ F+VP TCI+GYNNIRFDD SRNIFYRNF
Sbjct: 68 ITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFL 120
>gi|240142208|ref|YP_002966718.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
gi|240012152|gb|ACS43377.1| putative Exodeoxyribonuclease I [Methylobacterium extorquens AM1]
Length = 491
Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats.
Identities = 92/413 (22%), Positives = 151/413 (36%), Gaps = 40/413 (9%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V +D ET DV + FA V + + + V + + +P A+ +
Sbjct: 10 VCWDTETSDTDVRHGQIFDFAAVTSNLTDLVETGTRTVRIRRLSY-CIPAYGALSTNRLD 68
Query: 65 PQKALR-DGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
P D E + IH S ++GYN + FD+ R F+RN D Y
Sbjct: 69 PYALEATDRTDEFSAAASIHGILSPKPGRPLVVLGYNILSFDEEIVRTTFFRNLLDPYAT 128
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
S G R+DLL R +A PD DDG SF+L+ +A ANGI + AHDA D
Sbjct: 129 S-AKGVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSFRLERIAPANGI-GLRAHDALED 186
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT--PLVHVSGMFGASRSNTA 238
ATLAL +R P +E ++ + ++ D P+ ++G N
Sbjct: 187 ARATLALARRLRSSVPAAWETCLRASDRYEAERVFDAAAARNEPVWVLAG------GNAP 240
Query: 239 LIAPVAWHPRYKD-SVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
++ P +P K+ ++ S + + + L +L
Sbjct: 241 VLEP--AYPVGKNGRLLVLARSSRLAESMQIGADAL---------DLDDWRDGSFIRCRT 289
Query: 298 NKCPILMPIDY------CKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTS 351
N+ P+++ F D + + + L R P+T
Sbjct: 290 NRMPVVLSAAAAAVLSELHPGAFPVPPGDVRAPGAGWSEFKGA--LASRVAD--ADPWTK 345
Query: 352 SS-QDVDSQLYDGFFADVDRQIMDRILRT-APEQLSTLNLPFSDRRLPELFFR 402
+ + ++YDGF ++ M E+ + F D R+ E R
Sbjct: 346 PTGPTAEERIYDGFVDWGEKDRMRHFRYLGTWEERAAAFAGFRDSRIREFAAR 398
>gi|320086501|emb|CBY96272.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 157
Score = 202 bits (515), Expect = 1e-49, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 317 WGIDHKRCLENLTLLRQQTNLRDRFKAIYNK-PYTSSSQDVDSQLYDGFFADVDRQIMDR 375
W + + CL+NL +LR+ +RD+ AI+ + ++S +VD+QLYDGFF+D DR M
Sbjct: 5 WELTRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLYDGFFSDADRAAMKI 64
Query: 376 ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEE 435
+L T P L L++ F D+R+ +L F YRARNFP TL + E+Q WLEHR+++LT +++
Sbjct: 65 VLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQ 124
Query: 436 YKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
Y N+LQ LS +Y D+ K GL+ +L++Y ++
Sbjct: 125 YANELQMLSQQYAEDKTKLGLLKSLWQYATEIV 157
>gi|213023524|ref|ZP_03337971.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 131
Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats.
Identities = 66/108 (61%), Positives = 79/108 (73%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+ +DYETFG ALDRPAQFA +R D + I EVF+CKPADDYLP P AV ITG
Sbjct: 10 STFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
ITPQ+A G EA F+RRIH F+VP TC++GYNN+RFDD +RN F
Sbjct: 70 ITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNYF 117
>gi|325276506|ref|ZP_08142262.1| exonuclease I [Pseudomonas sp. TJI-51]
gi|324098353|gb|EGB96443.1| exonuclease I [Pseudomonas sp. TJI-51]
Length = 105
Score = 191 bits (487), Expect = 2e-46, Method: Composition-based stats.
Identities = 48/105 (45%), Positives = 61/105 (58%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT+ +DYET G + DRP Q AG+R D +I+ +C+PADD LP P A +
Sbjct: 1 MTSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAACLV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
TGITPQ G+ EAEF R+H + P TC GYN +RFDD
Sbjct: 61 TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEV 105
>gi|320541129|ref|ZP_08040515.1| putative exonuclease I [Serratia symbiotica str. Tucson]
gi|320028808|gb|EFW11101.1| putative exonuclease I [Serratia symbiotica str. Tucson]
Length = 107
Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 66/100 (66%), Positives = 78/100 (78%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N F +DYETFG+ ++DRPAQFAGVR D + IE V +C PADDYLP+PEAV ITG
Sbjct: 8 NTFYFHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPEAVMITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
ITPQ+A GV EAEF+R+IHQ FS+P TCI+GYNNIRFD
Sbjct: 68 ITPQQARAKGVNEAEFARQIHQAFSMPGTCILGYNNIRFD 107
>gi|330898430|gb|EGH29849.1| exonuclease I [Pseudomonas syringae pv. japonica str. M301072PT]
Length = 173
Score = 164 bits (416), Expect = 3e-38, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 308 YCKKEHFERWGIDHKRCLENLTLLRQQTN-LRDRFKAIYNKPYTSSSQDVDSQLYDGFFA 366
+ E +R +D L ++ D+ A+Y K +S+D + QLYDGF
Sbjct: 3 VLRSEDQQRLQLDMAGYQARAAQLSERREVWHDKLAAVYGKDDFVASEDPEQQLYDGFIG 62
Query: 367 DVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKK 426
D DR++ +++ + PEQL+ PF D RLPEL FRYRARNFP TLS +E+ W + ++
Sbjct: 63 DRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGEEQIRWRDFCQQ 122
Query: 427 MLTRSRIEEYKNKLQSLSGE-----YKGDEGKEGLINALYEYLQWV 467
L N L + + ++ +Y +
Sbjct: 123 RLRSPEWGA-PNTLHDFTAAWVECSLSAAPEQLEVLRQWQDYANKL 167
>gi|226490309|emb|CAQ42997.1| exonuclease [Escherichia coli K-12]
Length = 89
Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats.
Identities = 49/81 (60%), Positives = 57/81 (70%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITG
Sbjct: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 63 ITPQKALRDGVVEAEFSRRIH 83
ITPQ+A G EA F+ RIH
Sbjct: 68 ITPQEARAKGENEAAFAARIH 88
>gi|167949795|ref|ZP_02536869.1| Exodeoxyribonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 142
Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 337 LRDRFKAIYNKPYTSSSQDVDSQLYDG-FFADVDRQIMDRILRTAPEQLSTLNLPFSDRR 395
++ + ++ D D LY G FF++ DR+ M +I T +QL+ L+ F D R
Sbjct: 1 MQAKISRVHQMKQFEPQTDPDLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDAR 60
Query: 396 LPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRS------RIEEYKNKLQSLSGEYKG 449
LPE+ FRYRARN+P TL+E E+Q W E+R+ L + +++EY +L L+ +
Sbjct: 61 LPEMLFRYRARNWPETLNETERQRWDEYRQTRLFDADGGGAIQLDEYLAQLDLLAADEGL 120
Query: 450 DEGKEGLINALYEYLQWVI 468
+ L+ L E+ + V
Sbjct: 121 SAERRALLPKLLEWAERVA 139
>gi|289812334|ref|ZP_06542963.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 78
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 53/78 (67%), Positives = 62/78 (79%)
Query: 42 VFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRF 101
+F+CKPADDYLP P AV ITGITPQ+A G EA F+RRIH F+VP TC++GYNN+RF
Sbjct: 1 MFYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRF 60
Query: 102 DDYYSRNIFYRNFYDSYR 119
DD +RNIFYRNFYD Y
Sbjct: 61 DDEVTRNIFYRNFYDPYA 78
>gi|254506300|ref|ZP_05118443.1| exonuclease I [Vibrio parahaemolyticus 16]
gi|219550780|gb|EED27762.1| exonuclease I [Vibrio parahaemolyticus 16]
Length = 96
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 373 MDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSR 432
MD I +T P L+ L++ F+D R+ L FRYRARNFP TL E E+Q W H + SR
Sbjct: 1 MDIIRQTDPNNLAALDISFNDDRIAPLLFRYRARNFPATLDESEQQRWANHCRDYF-ESR 59
Query: 433 IEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
IE+Y L++L E++ DE K ++ ++Y+Y+Q ++
Sbjct: 60 IEDYMLNLENLVHEHESDEKKLAILKSVYQYVQKLV 95
>gi|213584484|ref|ZP_03366310.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 57
Score = 97.2 bits (241), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/57 (66%), Positives = 45/57 (78%)
Query: 72 GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G EA F+RRIH F+VP TC++GYNN+RFDD +RNIFYRNFYD Y WSW + NSR
Sbjct: 1 GENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 57
>gi|169841446|ref|ZP_02874559.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
Length = 106
Score = 94.5 bits (234), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 341 FKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELF 400
+ KP + D +S+LYDGF + D+ + + Q+ F D RL +++
Sbjct: 1 MLNLLKKPDFTPQADAESKLYDGFINNQDKLRSEVVRNLDQNQIKQYTPEFEDSRLKQIY 60
Query: 401 FRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKL 440
RY+ARN+P+ LS E+ ++ E+RK L R ++ + L
Sbjct: 61 PRYKARNYPNALSSDERIEYDEYRKNRLNR-QLPGFLKDL 99
>gi|169840886|ref|ZP_02873999.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
Length = 60
Score = 93.3 bits (231), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSR 80
QFAG+R D + I DD LP P A+ +TGITPQK + DG E++F++
Sbjct: 1 MQFAGIRTDADFNIIGEPYNLLVALNDDTLPSPSALMVTGITPQKTVSDGYTESQFAK 58
>gi|167949792|ref|ZP_02536866.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 79
Score = 90.6 bits (224), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 134 VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
++R +A P+GI+WPS G SF+L+ L ANGI H AHDA +DVYAT+A
Sbjct: 1 MVRLTHALRPEGIEWPSDAAGRPSFRLELLTAANGIAHQAAHDALSDVYATIA 53
>gi|325571052|ref|ZP_08146624.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
12755]
gi|325156137|gb|EGC68323.1| DNA polymerase III epsilon subunit [Enterococcus casseliflavus ATCC
12755]
Length = 918
Score = 79.8 bits (196), Expect = 8e-13, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 27/187 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + + D ET G D +DR QF V V + + I D + +
Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRFAA---DINPDRRISKQIQRL 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T IT Q+ + E + + I+ S NT + +N I FD ++ N F R
Sbjct: 57 THITNQQVSKAPYFE-DVADTIYNLLS--NTIFVAHN-IYFDYHFLSNEFVRCGLPPLSL 112
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + F P +SF+L DLA + G H N H A +D
Sbjct: 113 PG---------IDTVELAQVFLPTE----------SSFRLGDLADSIGFRHDNPHQADSD 153
Query: 181 VYATLAL 187
T AL
Sbjct: 154 AEVTAAL 160
>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
Length = 918
Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 27/187 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + + D ET G D +DR QF V V + + I D + +
Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRFAA---DINPDRRISKQIQRL 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T IT Q+ + E + + I+ S NT + +N I FD ++ N F R
Sbjct: 57 THITNQQVSKAPYFE-DIADTIYNLLS--NTIFVAHN-IYFDYHFLSNEFVRCGLPPL-- 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + F P +SF+L DLA + G H N H A +D
Sbjct: 111 -------SIPGIDTVELAQVFLPTE----------SSFRLGDLADSIGFRHDNPHQADSD 153
Query: 181 VYATLAL 187
T AL
Sbjct: 154 AEVTAAL 160
>gi|293568616|ref|ZP_06679931.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1071]
gi|291588576|gb|EFF20409.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1071]
Length = 929
Score = 77.9 bits (191), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|213584766|ref|ZP_03366592.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
Length = 43
Score = 77.9 bits (191), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/43 (67%), Positives = 32/43 (74%)
Query: 43 FFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
F+CKPADDYLP P AV ITGITPQ+A G EA F+RRIH
Sbjct: 1 FYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHAL 43
>gi|329569951|gb|EGG51706.1| exonuclease, DNA polymerase III, epsilon subunit family
[Enterococcus faecalis TX1467]
Length = 240
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|294622016|ref|ZP_06701159.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium U0317]
gi|291598406|gb|EFF29480.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium U0317]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|257886903|ref|ZP_05666556.1| DNA polymerase III [Enterococcus faecium 1,141,733]
gi|257822957|gb|EEV49889.1| DNA polymerase III [Enterococcus faecium 1,141,733]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|227551932|ref|ZP_03981981.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecium TX1330]
gi|257895474|ref|ZP_05675127.1| DNA polymerase III [Enterococcus faecium Com12]
gi|293378340|ref|ZP_06624509.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecium PC4.1]
gi|227178933|gb|EEI59905.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecium TX1330]
gi|257832039|gb|EEV58460.1| DNA polymerase III [Enterococcus faecium Com12]
gi|292643204|gb|EFF61345.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecium PC4.1]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|314997169|ref|ZP_07862155.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133a01]
gi|313588743|gb|EFR67588.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133a01]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|257898090|ref|ZP_05677743.1| DNA polymerase III [Enterococcus faecium Com15]
gi|257836002|gb|EEV61076.1| DNA polymerase III [Enterococcus faecium Com15]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|257883091|ref|ZP_05662744.1| DNA polymerase III [Enterococcus faecium 1,231,502]
gi|257818749|gb|EEV46077.1| DNA polymerase III [Enterococcus faecium 1,231,502]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|69247318|ref|ZP_00604300.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
[Enterococcus faecium DO]
gi|257890489|ref|ZP_05670142.1| DNA polymerase III [Enterococcus faecium 1,231,410]
gi|258614363|ref|ZP_05712133.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecium DO]
gi|260558928|ref|ZP_05831115.1| DNA polymerase III [Enterococcus faecium C68]
gi|293559766|ref|ZP_06676286.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1162]
gi|314940162|ref|ZP_07847340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133a04]
gi|314942421|ref|ZP_07849264.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133C]
gi|314950181|ref|ZP_07853466.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0082]
gi|314952303|ref|ZP_07855314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133A]
gi|314994254|ref|ZP_07859557.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133B]
gi|68194888|gb|EAN09359.1| DNA polymerase III, epsilon subunit:DnaQ exonuclease/DinG helicase
[Enterococcus faecium DO]
gi|257826849|gb|EEV53475.1| DNA polymerase III [Enterococcus faecium 1,231,410]
gi|260075036|gb|EEW63351.1| DNA polymerase III [Enterococcus faecium C68]
gi|291606249|gb|EFF35663.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1162]
gi|313591341|gb|EFR70186.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133B]
gi|313595562|gb|EFR74407.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133A]
gi|313598821|gb|EFR77666.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133C]
gi|313640601|gb|EFS05181.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0133a04]
gi|313643491|gb|EFS08071.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
TX0082]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|293571662|ref|ZP_06682683.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E980]
gi|291608332|gb|EFF37633.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E980]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIEAGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|261209451|ref|ZP_05923814.1| DNA polymerase III [Enterococcus faecium TC 6]
gi|289566622|ref|ZP_06447041.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
D344SRF]
gi|260076579|gb|EEW64343.1| DNA polymerase III [Enterococcus faecium TC 6]
gi|289161563|gb|EFD09444.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecium
D344SRF]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|294619947|ref|ZP_06699320.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1679]
gi|291593804|gb|EFF25305.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1679]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|257884118|ref|ZP_05663771.1| DNA polymerase III [Enterococcus faecium 1,231,501]
gi|257819956|gb|EEV47104.1| DNA polymerase III [Enterococcus faecium 1,231,501]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|257879980|ref|ZP_05659633.1| DNA polymerase III [Enterococcus faecium 1,230,933]
gi|257894416|ref|ZP_05674069.1| DNA polymerase III [Enterococcus faecium 1,231,408]
gi|257814208|gb|EEV42966.1| DNA polymerase III [Enterococcus faecium 1,230,933]
gi|257830795|gb|EEV57402.1| DNA polymerase III [Enterococcus faecium 1,231,408]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|293553821|ref|ZP_06674436.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1039]
gi|291602027|gb|EFF32264.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1039]
Length = 929
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D T L+ LI E+ KL
Sbjct: 151 ADSDAEVTGQLLLLIEERMRKL 172
>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
Length = 918
Score = 77.5 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 27/187 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + + D ET G D +DR QF V V + + I D + +
Sbjct: 1 MKPIYAVVDLETTGTDSTIDRIIQFGCVLV-QDGKIINRFAA---DINPDRRISKQIQRL 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T IT Q+ + E + + I+ S NT + +N I FD ++ N F R
Sbjct: 57 THITNQQVSKAPYFE-DIADTIYNLLS--NTIFVAHN-IYFDYHFLSNEFVRCGLPPL-- 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + F P +SF+L DLA + G H N H A +D
Sbjct: 111 -------SIPGIDTVELSQVFLPTE----------SSFRLGDLADSIGFRHDNPHQADSD 153
Query: 181 VYATLAL 187
T AL
Sbjct: 154 AEVTAAL 160
>gi|229545209|ref|ZP_04433934.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
gi|229309754|gb|EEN75741.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
Length = 175
Score = 77.1 bits (189), Expect = 5e-12, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 35/190 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREK 194
L+ LI+EK
Sbjct: 166 AELLLLIQEK 175
>gi|294616364|ref|ZP_06696157.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1636]
gi|291590878|gb|EFF22594.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus faecium E1636]
Length = 929
Score = 76.0 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 37/198 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ + D ET G + DR QF V R+ ++ K
Sbjct: 3 PRTYAVVDIETTGTNPKEDRIIQFGCVMIESGRITSRFSIDIHPGRKISKQIQH------ 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT Q+ + E + ++ I+ + T + +N I FD + + R
Sbjct: 57 ---LTGITNQRVQKAPYFE-DVAQTIYNLLAD--TIFVAHN-IYFDYNFLNHELMRCGLP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S + +D + F P SF+L DL+ + G H N H
Sbjct: 110 SLKIPG---------IDTVELAQIFLPTE----------PSFRLADLSESLGFIHENPHQ 150
Query: 177 AKADVYATLALVWLIREK 194
A +D T L+ LI E+
Sbjct: 151 ADSDAEVTGQLLLLIEER 168
>gi|257090540|ref|ZP_05584901.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|256999352|gb|EEU85872.1| DNA polymerase III epsilon subunit [Enterococcus faecalis CH188]
gi|315578691|gb|EFU90882.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0630]
Length = 929
Score = 75.6 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYDFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|332667256|ref|YP_004450044.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
1100]
gi|332336070|gb|AEE53171.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 282
Score = 75.6 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 36/190 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+D E G +V DR Q A + + ++ + EA+ + GI
Sbjct: 9 LCFFDIEATGLNVVRDRIVQIAII---KYFKDGREPQELSLMINPGIPISLEAILVHGIQ 65
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P+ + + +++I F N + GYN+ RFD F R +
Sbjct: 66 PKDVANKPTFQ-QLAQKIWDFIG--NADLAGYNSNRFDIPMLMEEFARVGME-------- 114
Query: 125 GNSRWDL-----LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+D+ +DV R Y P ++ + F + EH +AHDA A
Sbjct: 115 ----FDVTKRRSIDVQRIFYKMEPRTLKAALK------FYCEK-------EHEDAHDAMA 157
Query: 180 DVYATLALVW 189
DV AT+ +
Sbjct: 158 DVRATIDVFK 167
>gi|257084662|ref|ZP_05579023.1| DNA polymerase III [Enterococcus faecalis Fly1]
gi|256992692|gb|EEU79994.1| DNA polymerase III [Enterococcus faecalis Fly1]
Length = 929
Score = 75.6 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-----FITGI 63
D ET G D DR QF V V + + I + A D P+ +AV +TGI
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPN-QAVPKQIQSLTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + + E + + I+ + T + +N + FD + R
Sbjct: 68 SNTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL----- 118
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D + F P SF+L DL+ + G+ H N H A +D
Sbjct: 119 ----TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQV 164
Query: 184 TLALVWLIREKKPKL 198
T L+ LI+EK L
Sbjct: 165 TAELLLLIQEKMKSL 179
>gi|256961321|ref|ZP_05565492.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|293383606|ref|ZP_06629516.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|293387281|ref|ZP_06631838.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|312906156|ref|ZP_07765168.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|312909501|ref|ZP_07768356.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
gi|256951817|gb|EEU68449.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|291079118|gb|EFE16482.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
R712]
gi|291083318|gb|EFE20281.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
S613]
gi|310627802|gb|EFQ11085.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
DAPTO 512]
gi|311290174|gb|EFQ68730.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis DAPTO 516]
Length = 929
Score = 75.2 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLVQEG-KIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|227553912|ref|ZP_03983959.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
gi|227176898|gb|EEI57870.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis HH22]
Length = 929
Score = 75.2 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|29376872|ref|NP_816026.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227519901|ref|ZP_03949950.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|29344337|gb|AAO82096.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Enterococcus faecalis V583]
gi|227072695|gb|EEI10658.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis TX0104]
gi|315574388|gb|EFU86579.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309B]
gi|315580138|gb|EFU92329.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0309A]
Length = 929
Score = 75.2 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|315173642|gb|EFU17659.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1346]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|315146656|gb|EFT90672.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4244]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 73/194 (37%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLVQEG-KIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|315035644|gb|EFT47576.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0027]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|257087406|ref|ZP_05581767.1| DNA polymerase III [Enterococcus faecalis D6]
gi|256995436|gb|EEU82738.1| DNA polymerase III [Enterococcus faecalis D6]
gi|315025444|gb|EFT37376.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2137]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|256963550|ref|ZP_05567721.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|307271490|ref|ZP_07552762.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
gi|256954046|gb|EEU70678.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|306511762|gb|EFM80760.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0855]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|256853717|ref|ZP_05559082.1| DNA polymerase III [Enterococcus faecalis T8]
gi|307291048|ref|ZP_07570934.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|256710660|gb|EEU25703.1| DNA polymerase III [Enterococcus faecalis T8]
gi|306497897|gb|EFM67428.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0411]
gi|315030986|gb|EFT42918.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4000]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|257082037|ref|ZP_05576398.1| DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256990067|gb|EEU77369.1| DNA polymerase III [Enterococcus faecalis E1Sol]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|307287736|ref|ZP_07567779.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|306501474|gb|EFM70777.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0109]
gi|315164835|gb|EFU08852.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1302]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|256763069|ref|ZP_05503649.1| DNA polymerase III [Enterococcus faecalis T3]
gi|257079582|ref|ZP_05573943.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294779459|ref|ZP_06744857.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|307270866|ref|ZP_07552153.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|312903707|ref|ZP_07762881.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|256684320|gb|EEU24015.1| DNA polymerase III [Enterococcus faecalis T3]
gi|256987612|gb|EEU74914.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|294453465|gb|EFG21869.1| putative DnaQ family exonuclease/DinG family helicase [Enterococcus
faecalis PC1.1]
gi|306512779|gb|EFM81424.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX4248]
gi|310632899|gb|EFQ16182.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0635]
gi|315166434|gb|EFU10451.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1341]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|255972155|ref|ZP_05422741.1| DNA polymerase III [Enterococcus faecalis T1]
gi|255963173|gb|EET95649.1| DNA polymerase III [Enterococcus faecalis T1]
Length = 929
Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|256617168|ref|ZP_05474014.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|307277210|ref|ZP_07558314.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
gi|256596695|gb|EEU15871.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|295113409|emb|CBL32046.1| DnaQ family exonuclease/DinG family helicase, putative
[Enterococcus sp. 7L76]
gi|306506140|gb|EFM75306.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2134]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|229549451|ref|ZP_04438176.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256956656|ref|ZP_05560827.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257419833|ref|ZP_05596827.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300861259|ref|ZP_07107346.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|312953414|ref|ZP_07772254.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|229305688|gb|EEN71684.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis ATCC 29200]
gi|256947152|gb|EEU63784.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|257161661|gb|EEU91621.1| DNA polymerase III [Enterococcus faecalis T11]
gi|300850298|gb|EFK78048.1| helicase, DnaQ family exonuclease/DinG family [Enterococcus
faecalis TUSoD Ef11]
gi|310628623|gb|EFQ11906.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0102]
gi|315152082|gb|EFT96098.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0031]
gi|315159114|gb|EFU03131.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0312]
gi|315170323|gb|EFU14340.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX1342]
gi|327535661|gb|AEA94495.1| DNA-directed DNA polymerase III epsilon subunit [Enterococcus
faecalis OG1RF]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|315032870|gb|EFT44802.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0017]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|257421980|ref|ZP_05598970.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|257163804|gb|EEU93764.1| DNA polymerase III subunit epsilon [Enterococcus faecalis X98]
gi|315155308|gb|EFT99324.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0043]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|315161735|gb|EFU05752.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0645]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|315150174|gb|EFT94190.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0012]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|312899802|ref|ZP_07759121.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|311293052|gb|EFQ71608.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0470]
gi|315146017|gb|EFT90033.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX2141]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|257416585|ref|ZP_05593579.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
gi|257158413|gb|EEU88373.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|323481332|gb|ADX80771.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
62]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|255975219|ref|ZP_05425805.1| DNA polymerase III [Enterococcus faecalis T2]
gi|307285838|ref|ZP_07565972.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
gi|255968091|gb|EET98713.1| DNA polymerase III [Enterococcus faecalis T2]
gi|306502599|gb|EFM71866.1| DnaQ family exonuclease/DinG family helicase [Enterococcus faecalis
TX0860]
Length = 929
Score = 74.8 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF-ITGIT 64
D ET G D DR QF V V + + I + A D P+ P+ + +TGI+
Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIANF-------ATDVNPNQVVPKQIQSLTGIS 68
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + + I+ + T + +N + FD + R
Sbjct: 69 NTQVQKAPYFE-DVAHTIYHYLED--TIFVAHN-VHFDYNFLARELVRCGTPPL------ 118
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P SF+L DL+ + G+ H N H A +D T
Sbjct: 119 ---TIPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVT 165
Query: 185 LALVWLIREKKPKL 198
L+ LI+EK L
Sbjct: 166 AELLLLIQEKMKSL 179
>gi|330949040|gb|EGH49300.1| exonuclease I [Pseudomonas syringae pv. pisi str. 1704B]
Length = 51
Score = 74.1 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
+ GNSRWDL+DV+RA YA PDGI WP + DG + KL+ L A+GI
Sbjct: 5 EGGNSRWDLIDVVRAAYALRPDGIVWPEQ-DGRVTLKLERLTAAHGI 50
>gi|257869632|ref|ZP_05649285.1| DNA polymerase III [Enterococcus gallinarum EG2]
gi|257803796|gb|EEV32618.1| DNA polymerase III [Enterococcus gallinarum EG2]
Length = 920
Score = 72.9 bits (178), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 71/191 (37%), Gaps = 27/191 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + + D ET G D A+DR QF V + + + I D + +
Sbjct: 1 MKPIYAVVDLETTGTDPAIDRIIQFGCVLI-QDGQVINRFAT---DINPDRRISKQIQNL 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T IT Q+ R E + + I+ + T + +N I FD ++ R S
Sbjct: 57 THITNQQVKRAPYFE-DVAHTIYNLLTQ--TVFVAHN-IYFDYHFLSQELIRCGMPSLEI 112
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + F P +SF+L DLA + G H N H A +D
Sbjct: 113 PG---------IDTVELAQVFLPTE----------SSFRLGDLAESIGFVHENPHQADSD 153
Query: 181 VYATLALVWLI 191
T AL+ I
Sbjct: 154 AEVTAALLLYI 164
>gi|315640656|ref|ZP_07895761.1| DNA polymerase III [Enterococcus italicus DSM 15952]
gi|315483595|gb|EFU74086.1| DNA polymerase III [Enterococcus italicus DSM 15952]
Length = 911
Score = 72.5 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 63/191 (32%), Gaps = 36/191 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
MT + I D ET G + DR QF V V+ E + P+ I
Sbjct: 1 MT-TYAIVDIETTGTNPKEDRIFQFGCVFVENG-EIVGRFATM---IHPGRSISPQ---I 52
Query: 61 TGITPQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+T + + I++ S T + +N I FD + R
Sbjct: 53 QHLTHTTNKDVRHSPYFEDVAPTIYELLS--GTVFVAHN-IHFDYRFLNAELERC----- 104
Query: 119 RWSWDNGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
G R L +D + P I SF+L DL+ + G+ H H
Sbjct: 105 ------GCERLQLKGIDTVELAQILFPTEI----------SFRLSDLSESLGLAHERPHQ 148
Query: 177 AKADVYATLAL 187
A +D T L
Sbjct: 149 ADSDAEVTAQL 159
>gi|307327522|ref|ZP_07606708.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
gi|306886921|gb|EFN17921.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
Length = 274
Score = 72.1 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 66/186 (35%), Gaps = 20/186 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR Q A V DR ++ E L EA I GIT +
Sbjct: 15 FDTETTGLDVFKDRIVQAALVGQDRSGREVFREEWL---INPGILIPREATKIHGITSDR 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
A+ DG AE +I C + N +D R+
Sbjct: 72 AMEDGQDPAEAIEQITGLLEKALRAGCALVIQNAPYDLALLDAEAQRHSVVPLA----ER 127
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
+LD + ++ +G S L L+ G+ + AH A AD TL
Sbjct: 128 RPVAPVLDPVMLAKV---------AKVEGRHS--LAALSARFGVTNPRAHTAYADAVTTL 176
Query: 186 ALVWLI 191
A++ +
Sbjct: 177 AVLRKL 182
>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
Length = 1443
Score = 71.8 bits (175), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 47/223 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITG 62
FVI+D ET G D +FAG++V ++E + FF K P P AV IT
Sbjct: 407 TFVIFDIETTGLHGRYDSVIEFAGIKVKHN-REVERMQ-FFLKIDG---PLPAAVTEITK 461
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT Q L DG+ + ++ + ++ +N + FD + + F +
Sbjct: 462 IT-QAQLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPL---- 514
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKAD 180
N L+D + +A +P G S L ++ + H A D
Sbjct: 515 TNP-----LIDTLALSWALNP----------GFASHTLSNICAKLKFDFDDERLHRADYD 559
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
A K+F+Y K Q+ L+ I N+ L
Sbjct: 560 TQAL-----------KKVFDYF-----KEQVE-LMGITNLEQL 585
>gi|167949793|ref|ZP_02536867.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 76
Score = 71.8 bits (175), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP-LVHVSGMFGASRSNTAL 239
L LI++++P+L+ YL +RNK+QLR L++++ P L+HVS M+ A
Sbjct: 12 LARLIKQRQPRLYGYLLSHRNKHQLRDLLNLKATPPILLHVSSMYPVELGCIAP 65
>gi|269956916|ref|YP_003326705.1| DNA polymerase III subunit epsilon [Xylanimonas cellulosilytica DSM
15894]
gi|269305597|gb|ACZ31147.1| DNA polymerase III, epsilon subunit [Xylanimonas cellulosilytica
DSM 15894]
Length = 547
Score = 71.4 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 30/184 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F + D ET G DR + A +R+D ++ + A +I GIT
Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWST---RLNPQRTV--GATWIHGIT 103
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SYRWSWD 123
+ A+ + ++ Q + +G+N RFD + R +D W
Sbjct: 104 -DADVAHAPSFADVAAQVAQRLT--GAVFVGHNA-RFDAGFVLAELTRAGWDAPEPTIW- 158
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++ A + + PD +S +L D+A A GI +AH A D A
Sbjct: 159 --CTQA-------ASHHWLPDA----------SSRRLVDVAAAAGISLTHAHSALGDARA 199
Query: 184 TLAL 187
T A+
Sbjct: 200 TAAM 203
>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
pneumoniae FH]
Length = 1443
Score = 71.4 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 84/223 (37%), Gaps = 47/223 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITG 62
FVI+D ET G D +FAG++V ++E + FF K P P AV IT
Sbjct: 407 TFVIFDIETTGLHGRYDSVIEFAGIKVKHN-REVERMQ-FFLKIDG---PLPAAVTEITK 461
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT Q L DG+ + ++ + ++ +N + FD + + F +
Sbjct: 462 IT-QAQLEDGMEQQAGLEKLRAWLD--GCVMVAHNGLSFDLPFLQTQFEKYNIAPL---- 514
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKAD 180
N L+D + +A +P G S L ++ + H A D
Sbjct: 515 TNP-----LIDTLALSWALNP----------GFASHTLSNICAKLKFDFDDERLHRADYD 559
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
A K+F+Y K Q+ L+ I N+ L
Sbjct: 560 TQAL-----------KKVFDYF-----KEQVE-LMGITNLEQL 585
>gi|256851162|ref|ZP_05556551.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260660586|ref|ZP_05861501.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|282934628|ref|ZP_06339871.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
gi|297206027|ref|ZP_06923422.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
gi|256616224|gb|EEU21412.1| ATP-dependent DNA helicase [Lactobacillus jensenii 27-2-CHN]
gi|260548308|gb|EEX24283.1| ATP-dependent DNA helicase [Lactobacillus jensenii 115-3-CHN]
gi|281301203|gb|EFA93504.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
gi|297149153|gb|EFH29451.1| ATP-dependent DNA helicase [Lactobacillus jensenii JV-V16]
Length = 936
Score = 71.4 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
F + D ET G DR QF + +RQ I T F P D P+AV +TG
Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNRQ---IIKTYSFLINPKADI---PQAVQNLTG 63
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I P + V + F+ +I T + +N I FD + N +
Sbjct: 64 IKPADVVNQPVFK-NFATQIEDILQD--TVFVAHN-INFDLPFLNAELAANGFPKL---- 115
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N D +++ + + P+ S++L DL + ++H N H A +D Y
Sbjct: 116 --RNRAIDTVELSKIAF---------PT----LPSYRLSDLTHSLNLKHTNPHQADSDAY 160
Query: 183 ATLALVWLIREK 194
AT +L+ I +K
Sbjct: 161 ATASLLLKILDK 172
>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
16608]
gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
16608]
Length = 896
Score = 70.2 bits (171), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 77/203 (37%), Gaps = 33/203 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPEAV 58
V++D ET G DV D + A +R+ E I + + LP +P
Sbjct: 514 IVVFDTETTGLDVFSDDIIEIAAIRIKGG-EIIGDPLDLYIETDKPILPKLGDKENPMYS 572
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ A + A+ +R + ++G+N +D N R D
Sbjct: 573 IYHA---KMAADRLLAPADALQRFLAYIGTRP--VLGHNA-SYDYNIIDNCLKRYCND-- 624
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+GN +D L ++R +P G S+KL+ L ++ VN+H A
Sbjct: 625 -TMQTHGNRCFDSLKLIRL---LAP----------GLHSYKLESLLETFRLKGVNSHRAI 670
Query: 179 ADVYATLAL----VWLIREKKPK 197
DV AT++L EK+ K
Sbjct: 671 DDVRATISLVHLCARKASEKQAK 693
>gi|302668948|ref|YP_003832773.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
gi|302397288|gb|ADL36191.1| exonuclease family protein [Butyrivibrio proteoclasticus B316]
Length = 302
Score = 69.8 bits (170), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 33/194 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADDYLPDPEAV-FIT 61
+IYD ET G Q + +++ I T + +P +P P A +
Sbjct: 33 IIIYDTETTGTGK-KAYIVQISALKLSPG-NPYYIVDTLDQYIRPP---IPMPAAASAVN 87
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNF---YDS 117
IT + L D E I FF PN + I GYN+I FD+ N++ R +D
Sbjct: 88 HIT-DEFLEDKPSEEIALSWIQNFFGDPNDSVIAGYNHISFDNKMMNNMYQRAAGLTFDP 146
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI---EHVNA 174
+W++ ++ A + I DG F L +A GI E
Sbjct: 147 ----------KWNVDALVMARCLVDRNEIT-----DGR--FTLASIAETYGIKTDEDQQL 189
Query: 175 HDAKADVYATLALV 188
H+A D+ T+ ++
Sbjct: 190 HNAMTDIQVTMKVM 203
>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
multacida DSM 20544]
gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
multacida DSM 20544]
Length = 874
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 27/195 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYLPDPEAVFI 60
+ V++D E G D D Q AG+R+ R + + + + ++ +
Sbjct: 510 AENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLLRARRSVG-----DSYRV 564
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
I+ ++G E E R F+ I+G+N + +D + R +
Sbjct: 565 HKISDAILQQEGE-EPEAVLREFCAFA-EGAVIVGHN-VTYDLSILGSELARLGLPPLSY 621
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D LD+ R Y P+ + KL+ L + H + HDA D
Sbjct: 622 Q-----RYYDTLDIFRRFY---PNL----------PNHKLEYLGEFCKVSHRSTHDAMDD 663
Query: 181 VYATLALVWLIREKK 195
V AT ++ EK
Sbjct: 664 VCATAEILTYAIEKN 678
>gi|145218937|ref|YP_001129646.1| exonuclease, RNase T and DNA polymerase III [Prosthecochloris
vibrioformis DSM 265]
gi|145205101|gb|ABP36144.1| Exonuclease, RNase T and DNA polymerase III [Chlorobium
phaeovibrioides DSM 265]
Length = 194
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 29/197 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+ +D ET G D + QFAG+ + +ES E+ +P + D EA+ +TG T
Sbjct: 5 LWFDLETTGIDPERNGIIQFAGL-AEIDGAVVESFEIKM-QPHEGAQIDDEALEVTGFT- 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCI--------IGYNNIRFDDYYSRNIFYRNFYDS 117
++A+ AE R+I F + + GYN + FD + +F R +D
Sbjct: 62 REAIPTFTPHAEAYRQIDDFLARHVSRFDRNDKFYPAGYN-VHFDLEFLSRMFKR--FDQ 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANGIEHVNA 174
Y L P I G S +LQ G++ NA
Sbjct: 119 YG------------LGSFTNWRMLDPQPILNLMDYMGRISLPNHRLQTACDHFGVKLENA 166
Query: 175 HDAKADVYATLALVWLI 191
HDA AD+ AT AL+ +
Sbjct: 167 HDALADITATRALMQRL 183
>gi|238854632|ref|ZP_04644962.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 269-3]
gi|260664425|ref|ZP_05865277.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
gi|282932977|ref|ZP_06338374.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
gi|238832422|gb|EEQ24729.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 269-3]
gi|260561490|gb|EEX27462.1| ATP-dependent DNA helicase [Lactobacillus jensenii SJ-7A-US]
gi|281303012|gb|EFA95217.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus
jensenii 208-1]
Length = 936
Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 31/192 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
F + D ET G DR QF + +RQ I T F P D P+AV +TG
Sbjct: 10 FAVVDLETTGTRRGQDRIIQFGCAIIKNRQ---IIKTYSFLINPEADI---PQAVQNLTG 63
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I P + V + +++ +I T + +N I FD + N +
Sbjct: 64 IKPTDVINQPVFK-KYAAQIEDILQD--TVFVAHN-INFDLPFLNAELAANSFPKL---- 115
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N D +++ + + P+ S++L DL + ++H N H A +D Y
Sbjct: 116 --HNRAIDTVELSKIAF---------PT----LPSYRLSDLTHSLNLKHTNPHQADSDAY 160
Query: 183 ATLALVWLIREK 194
AT +L+ I +K
Sbjct: 161 ATASLLLKIFDK 172
>gi|78186412|ref|YP_374455.1| exonuclease [Chlorobium luteolum DSM 273]
gi|78166314|gb|ABB23412.1| Exonuclease [Chlorobium luteolum DSM 273]
Length = 197
Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 37/203 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE----STEVFFCKPADDYLPDPEAVFIT 61
+ +D ET G D QFAG +IE + +P + + + EA+ ++
Sbjct: 5 LWFDLETTGIDPDRHGIIQFAG------LAEIEGVVAESFEIKMQPHEGAMIEDEALAVS 58
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCI--------IGYNNIRFDDYYSRNIFYRN 113
G + ++ + AE + I F + + GYN +RFD + +F R
Sbjct: 59 GFSREQ-IASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYN-VRFDLDFLSRMFRR- 115
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANGIE 170
YD Y L + P I G S KLQ + G+
Sbjct: 116 -YDQYG------------LGSFINWRSLDPQPILNIMEYMGRLSLPNHKLQTVCEHLGVR 162
Query: 171 HVNAHDAKADVYATLALVWLIRE 193
NAHDA +D+ AT L+ L+ E
Sbjct: 163 LENAHDALSDIKATRELMELLME 185
>gi|162447750|ref|YP_001620882.1| DNA polymerase III subunit epsilon [Acholeplasma laidlawii PG-8A]
gi|161985857|gb|ABX81506.1| DNA polymerase III, epsilon subunit [Acholeplasma laidlawii PG-8A]
Length = 227
Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 33/214 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVD---RQWEKIESTEVFFCKPAD--DYLPDPEAVF 59
+++D+ET G D+ + V ++ +E ++ + + D++ +
Sbjct: 8 ILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISN----- 62
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGIT + RDGV E E++ R +T ++ YN + FD + + Y+ +
Sbjct: 63 LTGITNEMLARDGVEE-EYAFRQLDNLIDEDTLLVAYN-LAFDIGFL-SALYQTY---VA 116
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
++ N D+LD A D +P KL++ + + AH A
Sbjct: 117 HNYKIQN---DILD----CMAVYKDRYPYPH--------KLENAVARFELSNNQAHRASE 161
Query: 180 DVYATLALVWLIR--EKKPKLFEYLYDYRNKNQL 211
D AT ++ + E KL+ + Y K L
Sbjct: 162 DAKATFKVLDCLASEENNLKLYVNVLGYNKKYGL 195
>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
Length = 896
Score = 68.3 bits (166), Expect = 3e-09, Method: Composition-based stats.
Identities = 54/277 (19%), Positives = 96/277 (34%), Gaps = 53/277 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPE 56
V++D ET G +V D + A +R+ E + + + LP +P
Sbjct: 512 EEIVVFDTETTGLNVFQDDIIEIAAIRIKGG-EVVGEPLDLYIETDKPILPMLGDKENPM 570
Query: 57 -AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
A++ ++ + L ++ RR + I+G+N +D N R
Sbjct: 571 YAIYHEKMSTGELL----SPSDALRRFLAYVGTSP--ILGHNA-NYDYNILDNNLQRYCN 623
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D + +D L ++R +P S+KL+ L + VN+H
Sbjct: 624 D---TMQAHDIRCFDSLKLIRL---LAPSL----------HSYKLESLLETFQLAGVNSH 667
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKN-QLRKLIDIQNMTPLVHVSGMFGASR 234
A DV AT++LV L EK R K Q I + P +V R
Sbjct: 668 QAIDDVKATVSLVRLCAEKA----------REKQAQQEAFIHHPKVKPFANVLRSNYGER 717
Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
A+ + + + + + +L +
Sbjct: 718 YREAV-----------NRLYQLSTDHEPALVSELSAA 743
>gi|322384417|ref|ZP_08058103.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321150775|gb|EFX44235.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 204
Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 40/202 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + ++D ET G D D+ + A +R D + +V K +
Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGRLDVRITKNSG----------- 48
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T +TP+ G+ E+ I + ++P + +
Sbjct: 49 TKLTPEIINLTGINESMMRGGIPEELAIP-----------------LLACFMSGSIVVAH 91
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGI----QWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +DL A Y P + S L +A GIE H
Sbjct: 92 H-----APFDL--SFLARYLVEPSSFVCTRVLSKLVEPGESASLAAVAERRGIELTGHHR 144
Query: 177 AKADVYATLALVWLIREKKPKL 198
A ADV AT+ + ++ + L
Sbjct: 145 AMADVEATVKIFQQLKAEADAL 166
>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
Length = 896
Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 96/277 (34%), Gaps = 53/277 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPE 56
V++D ET G +V D + A +R+ E + + + LP +P
Sbjct: 512 EEIVVFDTETTGLNVFQDDIIEIAAIRIKGG-EVVGEPLDLYIETDKPILPMLGDKENPM 570
Query: 57 -AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
A++ ++ + L ++ +R + I+G+N +D N R
Sbjct: 571 YAIYHEKMSTGELL----SPSDALQRFLAYVGTSP--ILGHNA-NYDYNILDNNLQRYCK 623
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D + +D L ++R +P S+KL+ L + VN+H
Sbjct: 624 D---TMQAHDIRCFDSLKLIRL---LAPSL----------HSYKLESLLETFHLAGVNSH 667
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKN-QLRKLIDIQNMTPLVHVSGMFGASR 234
A DV AT++LV L EK R K Q I + P +V R
Sbjct: 668 QAIDDVKATVSLVRLCAEKA----------REKQAQQEAFIHHPKVKPFANVLRSNYGER 717
Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSV 271
A+ + + + + + +L +
Sbjct: 718 YREAV-----------NRLYKLSTDHEPALVSELSAA 743
>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Veillonella atypica ACS-134-V-Col7a]
gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Veillonella atypica ACS-134-V-Col7a]
Length = 861
Score = 67.5 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 37/185 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-----AVFI 60
V+YD E+ G D DR Q A +R+D+ +IE E F +P + +
Sbjct: 495 VVYDVESTGTDTTQDRIIQIAAMRIDKDGNEIERFERFI---------NPGKSVGTSQLV 545
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-NFYDSYR 119
G T G + + FS N I+G+N + +D + R N +
Sbjct: 546 HGFTDAYLAEHGESP-KVVLEAFKEFSN-NRIIVGHN-VNYDISILSHELARHNLGEP-- 600
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D LD+ R Y P+ ++ KL L+ I H H+A
Sbjct: 601 ----QFKAVYDTLDIFRRFY---------PTLENH----KLGFLSKYFPINHTPTHNAMD 643
Query: 180 DVYAT 184
D+ AT
Sbjct: 644 DIIAT 648
>gi|257466613|ref|ZP_05630924.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
gi|315917768|ref|ZP_07914008.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
gi|313691643|gb|EFS28478.1| exonuclease [Fusobacterium gonidiaformans ATCC 25563]
Length = 186
Score = 67.5 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 20/193 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G Q A + V+ +I+ T +C P D EA+ IT T ++
Sbjct: 7 DTETTGL-TYRSTIIQLAAI-VEID-GEIKETINLYCAPFPDSDISEEALSITKFTREEI 63
Query: 69 LRDGVVEA---EFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ + F++ + ++ N +IG+N ++FD RN YR + + S
Sbjct: 64 FQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHN-VKFDLDMLRNWAYRC-NERFIAS 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ + + +D L + + + P ++ KL+ L A I NAH+A AD
Sbjct: 122 YIDFKNEFDTLAFTKCLKILG----KLPQTENN----KLETLCQAFQIPLENAHNALADT 173
Query: 182 YATLALVWLIREK 194
A L ++ K
Sbjct: 174 IAAKDLYHYLQNK 186
>gi|259503450|ref|ZP_05746352.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
gi|259168528|gb|EEW53023.1| ATP-dependent helicase DinG [Lactobacillus antri DSM 16041]
Length = 929
Score = 67.5 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G V DR Q V V + + I E P + P AV +TGI +
Sbjct: 3 DLETTGTSVNHGDRIIQVGCVLV-QDGQVINRFETKI-NPRERI---PRAVVQLTGIQER 57
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + E + + I+ + T + +N + FD + R Y
Sbjct: 58 DVRKAPLFE-DVAGTIYSLLT--GTIFVAHN-VNFDFPFLNAELERAGYPPL-------- 105
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
+D + P SF+L+DL + IEH + H A +D AT
Sbjct: 106 -SIKAIDTVTLSQILLPTA----------KSFRLRDLTSSLQIEHDHPHSAVSDAEATTG 154
Query: 185 --LALVWLIRE 193
+ L+ + +
Sbjct: 155 LLVDLLKRVHD 165
>gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
Length = 1454
Score = 67.5 bits (164), Expect = 5e-09, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 68/201 (33%), Gaps = 44/201 (21%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPKRWDAPITDVDNWPRCIQIAWQLHDEMGNLIEH---------QDYLIS 52
Query: 55 P-------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
P +A I GI+ A GV E + ++ S T + NI FD
Sbjct: 53 PDGFDIPYDAERIHGISTDLAREQGVPLLEILDKFNEALSK--TKFVVGQNIGFDINIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F+R + S L V+ + + +Q P G FKL L +
Sbjct: 111 AEFHRYGVE----------SALSKLPVLDTCTEITANLLQLPGGRGGR--FKLPTLTELH 158
Query: 168 ----GIEHVNAHDAKADVYAT 184
+ AH+A ADV AT
Sbjct: 159 EYLFNVPFAEAHNATADVEAT 179
>gi|300811276|ref|ZP_07091776.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497736|gb|EFK32758.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 290
Score = 67.5 bits (164), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 31/191 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G + D+ V+ D + K D +P + V +TGIT
Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHD------GTEFYRLIKQDID-VPK-QIVELTGIT 177
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P +DGV + + F I+GYN RFD + + + +
Sbjct: 178 PAMLDKDGVPLQDVLGELTDFVGDVP--IVGYN-FRFDSAFLNREYRKCGMQELKNEIK- 233
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
DLL V++ ++ ++KLQ + GIE+ H+A +D AT
Sbjct: 234 -----DLLPVVK-------------RKEKFLDNYKLQTVLSNYGIENKVPHNAVSDARAT 275
Query: 185 LALV-WLIREK 194
L LI+ +
Sbjct: 276 KELAMKLIKNR 286
>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
15579]
gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
15579]
Length = 855
Score = 67.1 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 37/189 (19%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFI 60
+ V++D E+ G + D Q AG++++ + E IE E F Y+ D + +
Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIEKFERF---LTPKKYVGD--SYLV 546
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
G + Q G + R+ + F V +T +IG+N I FD + R
Sbjct: 547 HGFSDQFLKEKGEDK----ERVLKDFLEFVKDTVVIGHN-ITFDITILNSELQR-----L 596
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANGIEHVNAH 175
N + +D LD+ R Y S KL+ L+ E ++H
Sbjct: 597 GLEKANFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFNTETKSSH 640
Query: 176 DAKADVYAT 184
DA D+ AT
Sbjct: 641 DAMDDILAT 649
>gi|327404630|ref|YP_004345468.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
gi|327320138|gb|AEA44630.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
16823]
Length = 284
Score = 67.1 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 77/206 (37%), Gaps = 43/206 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVF 59
+T +FV+ D ET G DVA DR + A ++ + +CK + +P E+
Sbjct: 5 LTRNFVMLDLETTGLDVAKDRIIEIALIKT----TPTGE-QSEYCKRVNPTIPISKESAE 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGIT + + E + + I F + + GYN+ +FD F R
Sbjct: 60 ITGITDEMVATEPTFE-QLADEIAAFIGDAD--LGGYNSNKFDIPVLAEEFLR-----IS 111
Query: 120 WSWD-NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE------HV 172
S+ N D+ ++ K++ LA +
Sbjct: 112 HSFKINDRKFIDVQNIFH----------------------KMEQRTLAAAYQFYCKEPME 149
Query: 173 NAHDAKADVYATLALVWLIREKKPKL 198
NAH+A D TL + E+ P L
Sbjct: 150 NAHNALYDTKVTLDVFKAQLERYPDL 175
>gi|167949794|ref|ZP_02536868.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 60
Score = 67.1 bits (163), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 264 VFQDLDSVQLAKRLFTSHDEL-KGLVPVPIKEVHLNKCPILMPIDYCK 310
+LD Q+ +RLFT +L +G+ +P+K VHLNKCP+L+P +
Sbjct: 2 PLLELDDEQIHQRLFTPTADLPEGVERIPLKTVHLNKCPVLVPTNTLT 49
>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
Length = 861
Score = 67.1 bits (163), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 37/185 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-----AVFI 60
V+YD E+ G D DR Q A +R+D+ +IE E F +P + +
Sbjct: 495 VVYDVESTGTDTTEDRIVQIAAMRIDKDGNEIERFERFI---------NPGKSVGTSQLV 545
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-NFYDSYR 119
G T G + + FS N I+G+N + +D + R N +
Sbjct: 546 HGFTDAYLAEHGESP-KVVLEAFKEFSN-NRIIVGHN-VNYDISILSHELARHNLGEP-- 600
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D LD+ R Y P+ ++ KL L+ I H H+A
Sbjct: 601 ----QFKAVYDTLDIFRRFY---------PTLENH----KLGFLSKYFPINHTPTHNAMD 643
Query: 180 DVYAT 184
D+ AT
Sbjct: 644 DIIAT 648
>gi|325279480|ref|YP_004252022.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
splanchnicus DSM 20712]
gi|324311289|gb|ADY31842.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
splanchnicus DSM 20712]
Length = 190
Score = 67.1 bits (163), Expect = 6e-09, Method: Composition-based stats.
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 47/212 (22%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++ +D ET G + R Q A + D + +ES +V KP +P
Sbjct: 2 YLFFDTETTGLPKRWNAPVTDLENWPRLVQLAWIMYDDRGNMLESRDVI-VKPEGFTIP- 59
Query: 55 PEAVFITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
PEA + GIT A G +F+R+I T ++G+N I FD+ F
Sbjct: 60 PEASRVHGITTLVAREKGEPLQEVMEQFARKI-----DEATALVGHN-ISFDECIVGAEF 113
Query: 111 YR------NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R F + S D + P G S +L +L
Sbjct: 114 ERLRMMTTLFLKPKYCTMK-----------------LSTDYCKLP-GKKGFKSPRLAELH 155
Query: 165 LAN-GIEHVNAHDAKADVYATLALVWLIREKK 195
G NAH+A ADV AT W ++ +K
Sbjct: 156 QVLFGSGFDNAHNALADVEATARCFWELKNRK 187
>gi|56692916|ref|YP_164280.1| exonuclease [Pseudomonas phage F116]
gi|48527502|gb|AAT45877.1| exonuclease [Pseudomonas phage F116]
Length = 201
Score = 66.7 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 67/192 (34%), Gaps = 36/192 (18%)
Query: 7 IYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
I+D+ET G D + A + D I+ E +P + PE
Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAI-VRPNGWEI-TPEMT 62
Query: 59 FITGITPQKALRDGVVEAEFSR---RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
I GI+ ++A+ G+ EAE I+ + +NI FDD +R R +
Sbjct: 63 AIHGISHEQAMDVGISEAEALEGFLAINGRAARRAA-----HNISFDDRITRIALMR-YQ 116
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA----NGIEH 171
D + + + Y S + P KL LA A G +
Sbjct: 117 DEDAANAFKESG-----EKFCTCY-RSRAQVALPRN-------KLPTLAEAYKHFTGEDL 163
Query: 172 VNAHDAKADVYA 183
V AH A D A
Sbjct: 164 VEAHRAMPDAQA 175
>gi|254240149|ref|ZP_04933471.1| exonuclease [Pseudomonas aeruginosa 2192]
gi|126193527|gb|EAZ57590.1| exonuclease [Pseudomonas aeruginosa 2192]
Length = 201
Score = 66.7 bits (162), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 67/192 (34%), Gaps = 36/192 (18%)
Query: 7 IYDYETFGR--------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
I+D+ET G D + A + D I+ E +P + PE
Sbjct: 5 IFDFETTGIPEWKLPSEDPCQPHIVEVAALLCDAAGNTIDRFEAI-VRPNGWEI-TPEMT 62
Query: 59 FITGITPQKALRDGVVEAEFSR---RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
I GI+ ++A+ G+ EAE I+ + +NI FDD +R R +
Sbjct: 63 AIHGISHEQAMDVGISEAEALEGFLAINGRAARRAA-----HNISFDDRITRIALMR-YQ 116
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA----NGIEH 171
D + + + Y S + P KL LA A G +
Sbjct: 117 DEDAANAFKESG-----EKFCTCY-RSRAQVALPRN-------KLPTLAEAYKHFTGEDL 163
Query: 172 VNAHDAKADVYA 183
V AH A D A
Sbjct: 164 VEAHRAMPDAQA 175
>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
DSM 5476]
gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
DSM 5476]
Length = 865
Score = 66.7 bits (162), Expect = 8e-09, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 29/184 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ V++D E+ G D + D Q A VR+D + F + P ++ +
Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRID----ETGRVLRSFEQLLHPSKPVGQSEAVHH 552
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ G ++ F V ++G+N + FD + R +
Sbjct: 553 FSDALLAERGGEPP----QVLAEFCSFVRGAVVVGHN-VGFDLTILASELSRLGLPPAEY 607
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D LD+ R Y PD + KL+ L+ E ++HDA D
Sbjct: 608 E-----EYYDTLDLARRFY---PDL----------PNHKLETLSKLLDTEVKSSHDAMDD 649
Query: 181 VYAT 184
+ AT
Sbjct: 650 ILAT 653
>gi|328544128|ref|YP_004304237.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
SL003B-26A1]
gi|326413871|gb|ADZ70934.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
SL003B-26A1]
Length = 719
Score = 66.7 bits (162), Expect = 8e-09, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 67/194 (34%), Gaps = 36/194 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGIT-PQ 66
D ET G DV DR Q VR+ +I+ T VF +P PE A I G+
Sbjct: 24 DTETTGLDVRHDRIVQIGAVRMHGA--EIDETAVFEVTVDPG-IPIPEVASRIHGLADAD 80
Query: 67 KALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
A + G+ + I ++G+ +I FD R+ R+ + W
Sbjct: 81 VAGKPGLAAVMPDLVAFIGD------AVVVGH-SIHFDMAVLRHEAERHGF-----VWKE 128
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
LDV + + L LAL G+ H A D AT
Sbjct: 129 PR----ALDVALMAAGLDRELVDTS----------LDSLALGLGVTITGRHTALGDALAT 174
Query: 185 LALVWLIREKKPKL 198
+ +PKL
Sbjct: 175 ---ARVYAALQPKL 185
>gi|124485750|ref|YP_001030366.1| hypothetical protein Mlab_0928 [Methanocorpusculum labreanum Z]
gi|124363291|gb|ABN07099.1| Exonuclease, RNase T and DNA polymerase III [Methanocorpusculum
labreanum Z]
Length = 228
Score = 66.4 bits (161), Expect = 9e-09, Method: Composition-based stats.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 31/212 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR--QWEKIESTEVFFCKPADDYLPDPEAV-FITG 62
+I D ET G + +DR + A ++ D+ ++ + +D PE V +TG
Sbjct: 2 LIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDE----YISLPNDIC-YPENVQEMTG 56
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITP+ G E E + P ++ +N +FD + + + R+ R+ +
Sbjct: 57 ITPEILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRH-----RYVF 111
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV-NAHDAKADV 181
NG W ++D + P P +L D G++ V N+H A DV
Sbjct: 112 PNG---WGVIDTLTVFRDRKPQ----PH--------RLSDAISYYGLDGVKNSHRAIDDV 156
Query: 182 YATLALVWLIREKKPKLFEY--LYDYRNKNQL 211
A A+ + +++ L EY L K++L
Sbjct: 157 VALCAVFDAMCQEQNDLDEYINLIGVYGKSEL 188
>gi|257452752|ref|ZP_05618051.1| exonuclease [Fusobacterium sp. 3_1_5R]
gi|317059293|ref|ZP_07923778.1| exonuclease [Fusobacterium sp. 3_1_5R]
gi|313684969|gb|EFS21804.1| exonuclease [Fusobacterium sp. 3_1_5R]
Length = 186
Score = 66.4 bits (161), Expect = 9e-09, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 20/193 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G Q A + V+ +I+ T +C P D EA+ IT T ++
Sbjct: 7 DTETTGL-TYRSTIIQLAAI-VEID-GEIKETINLYCAPFPDSDISEEALSITKFTREEI 63
Query: 69 LRDGVVEA---EFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ + F++ + ++ N +IG+N ++FD RN YR + + S
Sbjct: 64 FQFDSPQVVCQTFTQILGKYVDKYNKNDKFIVIGHN-VKFDLDMLRNWAYRC-NERFIAS 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ + + +D L + + P ++ KL+ L A I NAH+A AD
Sbjct: 122 YIDFKNEFDTLAFTKCLKILGR----LPQTENN----KLETLCQAFQIPLENAHNALADT 173
Query: 182 YATLALVWLIREK 194
A L ++ K
Sbjct: 174 IAAKDLYHYLQNK 186
>gi|313123567|ref|YP_004033826.1| 3'-5' exonuclease with to crispr-associated protein [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312280130|gb|ADQ60849.1| 3'-5' exonuclease with to CRISPR-associated protein [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 290
Score = 66.4 bits (161), Expect = 9e-09, Method: Composition-based stats.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 31/191 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G + D+ V+ D + K D +P + V +TGIT
Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHD------GTEFYRLIKQDID-VPK-QIVELTGIT 177
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P ++GV + + F I+GYN RFD + + + +
Sbjct: 178 PAMLDKEGVPLQDVLGELTDFVGDVP--IVGYN-FRFDSAFLNREYRKCGMQELKNEIK- 233
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
DLL V++ ++ ++KLQ + GIE+ H+A +D AT
Sbjct: 234 -----DLLPVVK-------------RKEKFLDNYKLQTVLSNYGIENKVPHNAVSDARAT 275
Query: 185 LALV-WLIREK 194
L LI+ +
Sbjct: 276 KELAMKLIKNR 286
>gi|167462368|ref|ZP_02327457.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 203
Score = 65.6 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 40/202 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + ++D ET G D D+ + A +R D + ++ K + L PE V +
Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGRLDIRITKNSGTKL-TPEIVNL 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + +R GV E + F S T ++ + + +
Sbjct: 59 TGIS-ESMMRGGVPEPVAIMLLSCFMS--GTIVVAH------------------HAPF-- 95
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQ----WPSRDDGATSFKLQDLALANGIEHVNAHD 176
DL A Y F PD + S L +A GIE H
Sbjct: 96 ---------DL--AFLARYQFEPDSFVCTRALSKLVESDESASLASVAERRGIELTGHHR 144
Query: 177 AKADVYATLALVWLIREKKPKL 198
A DV AT+ + ++ + L
Sbjct: 145 AMNDVEATVKVFQQMKAEADAL 166
>gi|240143784|ref|ZP_04742385.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
gi|257204219|gb|EEV02504.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
Length = 228
Score = 65.6 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 71/205 (34%), Gaps = 35/205 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
V +D ET G D D+ + A V IE FCK + +P+ + V +T I
Sbjct: 7 IVFFDTETTGLDPEKDQIIELAAALVTE--NGIELKIDAFCKLPEGEKIPE-KIVELTHI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T G+ E R + ++ +NI+FD + +F R
Sbjct: 64 TDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVP------ 117
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-------VNAHD 176
+A + D + KL AN IEH N+H
Sbjct: 118 ------------KAPKLRALDSLTVYKDRAAYPH-KL-----ANAIEHYGLADKVQNSHR 159
Query: 177 AKADVYATLALVWLIREKKPKLFEY 201
A DV A + + E++ L +Y
Sbjct: 160 AIDDVLALYEVTKAMSEERDDLTDY 184
>gi|149196822|ref|ZP_01873875.1| exonuclease [Lentisphaera araneosa HTCC2155]
gi|149139932|gb|EDM28332.1| exonuclease [Lentisphaera araneosa HTCC2155]
Length = 261
Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 68/183 (37%), Gaps = 27/183 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V +D ET G + DR + ++V ++ + + EA ITGIT
Sbjct: 9 IVFFDLETTGLNPTEDRIIEICCIKVHPD----GKRDIKTRRVNPEKPISSEASEITGIT 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++D + ++ I++FF I GYN +RFD F R
Sbjct: 65 -DEDVKDEPTFKQMAKGIYKFF--EGCDISGYNIMRFDLRVLTEEFKRAGI-------SF 114
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
S DL+DV R + P ++ R AH A+ DV AT
Sbjct: 115 DASAHDLVDVQRIFHKKEPRTLEAALRFYCKKDL-------------EGAHAAENDVIAT 161
Query: 185 LAL 187
+ +
Sbjct: 162 IDV 164
>gi|325912570|ref|ZP_08174953.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners UPII 60-B]
gi|325477991|gb|EGC81120.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners UPII 60-B]
Length = 241
Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITSTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 162 LVTAKMLLKIIDK 174
>gi|295703510|ref|YP_003596585.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
DSM 319]
gi|294801169|gb|ADF38235.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
megaterium DSM 319]
Length = 933
Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 83/227 (36%), Gaps = 42/227 (18%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M FV+ D ET G D+ QFA V V + +E F P D P F
Sbjct: 1 MNKRFVVVDLETTGHSPKQGDKMIQFAAVIV-EDGKIVERFSSFL-NPGMDIPP-----F 53
Query: 60 ITGIT-PQKALRDGVVEAEFSR-RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
IT +T Q + G E +I + + +N + FD + + Y+ ++
Sbjct: 54 ITQLTNIQNDMVKGAPLFEEISPKIIELLDD--AYFVAHN-VAFDLTFLQEELYQCGRET 110
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
NS D + P DG +KL LA IEH N H A
Sbjct: 111 LY------NSTVD---TVELARILLPTV-------DG---YKLSQLAEYLHIEHENPHQA 151
Query: 178 KADVYATLALVWLIREKK--------PKLFEYLYDYRNKNQLRKLID 216
+D T ++ L+ EK +L Y K+++ +LI
Sbjct: 152 DSDAEVTARILLLLIEKLKKLPLTTLKQL--YALSLHFKSEIGELIQ 196
>gi|312869960|ref|ZP_07730099.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
PB013-T2-3]
gi|311094545|gb|EFQ52850.1| putative ATP-dependent DNA helicase DinG [Lactobacillus oris
PB013-T2-3]
Length = 949
Score = 64.4 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G V DR Q V V + + I E P + P AV +TGI +
Sbjct: 23 DLETTGTSVNHGDRIIQIGCVLV-QDGQVINHFETK-VNPREKI---PRAVVQLTGIQDR 77
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + E + + I+ + T + +N + FD + R Y
Sbjct: 78 DVRKAPLFE-DVAGTIYSLLT--GTTFVAHN-VNFDFPFLNAELERAGYPPLPIK----- 128
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
+D + P SF+L+DL + IEH + H A +D AT
Sbjct: 129 ----AIDTVTLSQILLPTA----------KSFRLRDLTSSLQIEHDHPHSAVSDAEATAS 174
Query: 185 --LALVWLIRE 193
+ L+ + +
Sbjct: 175 LLVDLLKRVHD 185
>gi|309805626|ref|ZP_07699668.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners LactinV 09V1-c]
gi|308165064|gb|EFO67305.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners LactinV 09V1-c]
Length = 225
Score = 64.4 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I EK
Sbjct: 162 LVTAKMLLKIIEK 174
>gi|309807500|ref|ZP_07701459.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners LactinV 01V1-a]
gi|308169250|gb|EFO71309.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners LactinV 01V1-a]
Length = 234
Score = 64.4 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 4 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 57
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 58 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 112 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 154
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 155 LVTAKMLLKIIDK 167
>gi|104773929|ref|YP_618909.1| hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423010|emb|CAI97696.1| Hypothetical protein Ldb0875 [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 290
Score = 64.4 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 31/191 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G + D+ V+ D + K D +P + V +TGIT
Sbjct: 126 FVAVDIETTGLNTETDQILSIGAVKHD------GTEFYRLIKQDID-VPK-QIVELTGIT 177
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++GV + + F N I+GYN RFD + + + +
Sbjct: 178 SEMLSKEGVPLQDALEELTDFVG--NVPIVGYN-FRFDSAFLNRDYRKCGMQELKNEIK- 233
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
DLL V++ ++ ++KLQ + GIE+ H+A +D AT
Sbjct: 234 -----DLLPVVK-------------RKEKFLDNYKLQTVLSNYGIENKVPHNAVSDARAT 275
Query: 185 LALV-WLIREK 194
L LI+ +
Sbjct: 276 KELAMKLIKNR 286
>gi|309809881|ref|ZP_07703731.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners SPIN 2503V10-D]
gi|308169833|gb|EFO71876.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners SPIN 2503V10-D]
Length = 233
Score = 64.4 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I EK
Sbjct: 162 LVTAKMLLKIIEK 174
>gi|225849433|ref|YP_002729598.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644689|gb|ACN99739.1| DNA polymerase III PolC-type (PolIII) [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 205
Score = 64.4 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/229 (21%), Positives = 80/229 (34%), Gaps = 40/229 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+I D ET G + + A +RV+ ++ KP+ ++P +TGI
Sbjct: 10 SFLIVDLETTGLNPVNSEIIEIAALRVEGGI-VVDKFHTL-VKPSIGFIPT-YITKLTGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSYRW 120
T + +E F + + FS N+ I+ +N ++ F + S I R+ +
Sbjct: 67 TNALVVDKPTIEEVFPQFLK--FS-ENSIIVAHNAQFDMSFLNSVSYQITGRSIQNPVLC 123
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ PD S L +LA I + H A D
Sbjct: 124 TQ-------------NLAKRLFPDL----------PSKSLVNLAYHFNIPYNKKHRALED 160
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGM 229
T L I +YLY N N++ L+ + N L S
Sbjct: 161 ALVTYELFKKI-------IDYLY-MFNINKVMDLVRLSNGKDLNQTSKR 201
>gi|284048335|ref|YP_003398674.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
20731]
gi|283952556|gb|ADB47359.1| DNA polymerase III, epsilon subunit [Acidaminococcus fermentans DSM
20731]
Length = 223
Score = 64.4 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 77/218 (35%), Gaps = 40/218 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPE 56
+ +V+ D ET G D D+ + + V + + P + P
Sbjct: 22 PDTYVVVDLETTGLDPERDQIIEIGALEVTAGKRGRTFSTLLQPRT----PLEGQYVSPF 77
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNF 114
+TGIT + R+ + F + +GYN + FD + + F
Sbjct: 78 ITRLTGITNEMLAAAPQP-----RQALEAFGKFLGSRVAVGYN-VGFDMGFLQQQFQDQL 131
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
Y W D+L + + ++ P D +L +LA +E+ A
Sbjct: 132 YRPLANDW------VDVLPMAQTLF---------PLWDHH----RLNNLAAWYHVENKEA 172
Query: 175 HDAKADVYATLALVWLIRE----KKPKLFEYLYDYRNK 208
H A +DV T ++E + P L ++L R K
Sbjct: 173 HRALSDVETTETCFRKLKEDAGRQYPSLEDFLEKVRQK 210
>gi|124005083|ref|ZP_01689925.1| exonuclease [Microscilla marina ATCC 23134]
gi|123989335|gb|EAY28896.1| exonuclease [Microscilla marina ATCC 23134]
Length = 245
Score = 64.4 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 41/190 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
V +D ET G D DR Q A +++ K+E + + +P PE + G+
Sbjct: 7 IVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKE-----RLINPTIPIPPEVTKVHGV 61
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDSYRWS 121
+ + ++D + ++ + +F + GYN++ FD F R +
Sbjct: 62 S-DEMVKDAPTFHQVAKSLFEFIR--GCDLAGYNHLNFDMPLLIEEFARAGVVFPEPDVQ 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI----EHVNAHDA 177
+ +DVM+ Y F P L+ A + E NAH+A
Sbjct: 119 Y---------IDVMKVYYHFHPRT-----------------LSAAYQLYCHKELENAHNA 152
Query: 178 KADVYATLAL 187
AD ATL +
Sbjct: 153 MADTQATLEI 162
>gi|239827467|ref|YP_002950091.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Geobacillus sp. WCH70]
gi|239807760|gb|ACS24825.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
WCH70]
Length = 921
Score = 64.0 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 32/198 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M + FVI D ET G DR Q G+ V + ++ FF P D +P P
Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQL-GMVVIENGKIVDRFSSFF-NPERD-IP-PFVQQ 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T IT ++ + D AE + ++ +N+ FD + + + +
Sbjct: 57 LTNIT-EQMVADAPSFAEEAAKVADMLQQSYFVA---HNVSFDLQFLQEELHMAGLPPF- 111
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+D + I +P+ + S+KL DLA I+H H A +
Sbjct: 112 --------SGPTIDTVELAR------IVFPTAE----SYKLGDLAKQLHIDHDQPHQADS 153
Query: 180 DVYAT----LALVWLIRE 193
D T +AL+ +R+
Sbjct: 154 DAEVTAKLFIALLNRLRQ 171
>gi|116493923|ref|YP_805657.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Lactobacillus casei ATCC 334]
gi|116104073|gb|ABJ69215.1| 3'-5' exonuclease and CRISPR-associated protein cas2 [Lactobacillus
casei ATCC 334]
Length = 301
Score = 64.0 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 29/191 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G D D V+ + E LP A TG++
Sbjct: 130 FVALDIETTGLDAERDAIIAIGAVK-GPSVNETEKFTTLVNPRRP--LPSTVAKL-TGLS 185
Query: 65 PQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
++ + +G+ +E + + F S+P ++GYN +RFD + S+
Sbjct: 186 AEELVANGISLSEAVQALRDFTGSLP---LVGYN-LRFDMGFLSAAGRETGLTSF----- 236
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GN +DLL +++ F + +KL + I++ H A +D A
Sbjct: 237 -GNQTFDLLPLVKKSSRFLDN-------------YKLSTVLAHYQIDNEQPHHALSDATA 282
Query: 184 TLALV-WLIRE 193
T+AL LI++
Sbjct: 283 TMALADKLIKK 293
>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 1437
Score = 64.0 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 30/193 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV +D ET G DR + + V+ Q IE + +L +T I
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVK--MQLGNVIEKFSEY---INPGFLLSEFTTKLTSI 473
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + E +R ++ N ++G+N + FD + N Y + +
Sbjct: 474 T-DAMVANSDTEENIIKRFREWSG--NAVLVGHN-VTFDVGFM-NAAYTRYNQPIITNA- 527
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++D + PD S++L +A I AH A D
Sbjct: 528 -------IIDTLPFTRWLYPD----------YKSYRLGTIAKRFNINLEQAHRAIFDAET 570
Query: 184 TLALV-WLIREKK 195
T + LI+E +
Sbjct: 571 TGHIAWRLIKEAQ 583
>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
Length = 896
Score = 64.0 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 47/226 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPE-AV 58
V++D ET G DV D + A +++ E + + K LP +P A+
Sbjct: 515 VVFDTETTGLDVFADDIIEIAAMKIKGG-EIVGEPLDLYIKTDKPILPKLGDKDNPMYAI 573
Query: 59 FITG------ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ ITPQ+AL+ F I + P I+G+N +D N R
Sbjct: 574 YHEKLSAEELITPQEALQR------FLAYIG---TRP---ILGHNA-SYDYNIIDNCLQR 620
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
D+ + + N +D L ++R SP S+KL+ L +
Sbjct: 621 YCNDTLK---AHKNPCFDSLKLIRL---LSPSL----------HSYKLESLLETFQLTGK 664
Query: 173 NAHDAKADVYATLALVWL----IREKKPKLFEYLYDYRNKNQLRKL 214
N+H A DV AT++LV L REK+P+ +L + K + L
Sbjct: 665 NSHQAIDDVGATVSLVRLCAEKAREKQPQQQSFLQHPKVKPFINTL 710
>gi|229818165|ref|ZP_04448447.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
20098]
gi|229784416|gb|EEP20530.1| hypothetical protein BIFANG_03457 [Bifidobacterium angulatum DSM
20098]
Length = 186
Score = 64.0 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 32/194 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFI 60
T+ +V+ D ET G A DR + VRV+ + + K + P P FI
Sbjct: 16 TDDYVVVDLETTGISPARDRIIEIGAVRVEH-----GTVTAEYSKLVN---PGRPVGGFI 67
Query: 61 TGIT-PQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TG+T + E +T + +N FD + + R +
Sbjct: 68 TGLTGISDEMVGNASPIEAVLPDFLAHLRPSDTIVA--HNANFDINFLYDNCMRTLGKPF 125
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+D +D +R A P +L DL GI H
Sbjct: 126 ---------SYDFIDTLRLSRALFPQE----------RQHRLVDLIQRFGIADEEEHRGL 166
Query: 179 ADVYATLALVWLIR 192
+D T+ ++
Sbjct: 167 SDALQTVECYERMK 180
>gi|281355248|ref|ZP_06241742.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
BAA-548]
gi|281318128|gb|EFB02148.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
BAA-548]
Length = 185
Score = 64.0 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 69/201 (34%), Gaps = 35/201 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I+D ET G DR + A VRVDR S F +AV + IT
Sbjct: 9 FTIFDVETTGMSPVRDRIVELAAVRVDRD----GSLSRFQSLVNPGVRIPAQAVAVHHIT 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
G F+ +T + +N RFD + + R W
Sbjct: 65 DDMVA--GAPSFARMGLDFLEFASESTLVA--HNARFDLGFLQESLARTGLP----LWKG 116
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV---NAHDAKADV 181
D L +++ + P+ S+ LQ L +E NAH A ADV
Sbjct: 117 --KTLDSLRLLKTTF---PNL----------PSYNLQSLRAYFQLETEKGMNAHRAGADV 161
Query: 182 YAT-----LALVWLIREKKPK 197
T +AL IR P+
Sbjct: 162 EWTRQVLEIALSKAIRMSAPQ 182
>gi|150398405|ref|YP_001328872.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
gi|150029920|gb|ABR62037.1| DNA polymerase III, epsilon subunit [Sinorhizobium medicae WSM419]
Length = 242
Score = 64.0 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 31/179 (17%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + G+ ++ Q+ T + P D + PEA+ + GIT
Sbjct: 4 IIFDTETTGLDNREDRVIEIGGIELENQF-PTGRTIHIYINPGDRKV-HPEALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
L+D AE ++ I FF + +N FD + F R
Sbjct: 61 DDFLKDKPSFAEIAQEIVDFFGDARWVA-----HNATFDMGFINAEFERLGLPPV----- 110
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKAD 180
+ D L + R + P+ L L GI H H A D
Sbjct: 111 GSDRVIDTLSLARRKHPMGPNS--------------LDALCRRYGIDNSHRTRHGALLD 155
>gi|304406903|ref|ZP_07388557.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
curdlanolyticus YK9]
gi|304343890|gb|EFM09730.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
curdlanolyticus YK9]
Length = 957
Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F + D ET G A D Q V +D + ++ F +PA D +P P +TGIT
Sbjct: 3 FAVLDLETTG-HQAEDEMIQIGIVMLDEELNVTDTFSSF-VRPATD-IP-PFITQLTGIT 58
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ VE + + ++ +N+ FD ++ R Y +
Sbjct: 59 NEMVADAPSVEDVLTDVVKLL----GDAVLVAHNVGFDAHFMNRALDRCGYSPFT----- 109
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
R D +D++R +Y P+ S++L ++ A GI H H A +D AT
Sbjct: 110 -GRRLDTIDLLRMLY---------PT----LPSYQLGAVSEAFGITHERKHQADSDAEAT 155
>gi|51893409|ref|YP_076100.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
14863]
gi|51857098|dbj|BAD41256.1| DNA polymerase III-like protein [Symbiobacterium thermophilum IAM
14863]
Length = 390
Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 25/185 (13%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + V+ D ET G + R Q V + Q +++ E + D + A+ +
Sbjct: 20 MRYNLVVIDTETTGLEYDQHRIIQIGVVAIKEQ-RIVKTWESKL-RLIDGEV-SAYAMQV 76
Query: 61 TGITPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ P + + R++ + F P ++G +N+ FD + + F R+
Sbjct: 77 NRLDPSDMRSEKYPHPKAVLRKLQEEFLRPG-VLLGAHNLSFDLGFLQAEFARHGLP--- 132
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W +D M A PD S L+ LA +E HDA A
Sbjct: 133 -QWQGN-----FVDSMALGRALLPDL-----------SASLESLARHFRVELTQHHDALA 175
Query: 180 DVYAT 184
D AT
Sbjct: 176 DAVAT 180
>gi|329920271|ref|ZP_08277055.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus iners SPIN 1401G]
gi|328936316|gb|EGG32764.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus iners SPIN 1401G]
Length = 933
Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I EK
Sbjct: 162 LVTAKMLLKIIEK 174
>gi|116513938|ref|YP_812844.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|116093253|gb|ABJ58406.1| 3'-5' exonuclease with to CRISPR-associated protein from COG1343
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 290
Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 33/192 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
FV D ET G + D+ V+ D F+ D +P + V +TGI
Sbjct: 126 FVAVDIETTGLNTESDQILSIGAVKHDG--------IEFYRLIKQDIDVPK-QIVELTGI 176
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + ++GV + + F N I+GYN RFD + + + +
Sbjct: 177 TSEMLSKEGVPLQDALEELTDFVG--NVPIVGYN-FRFDSVFLNRDYRKCGMQELKNEIK 233
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
DLL V++ R+ ++KLQ + GIE+ H+A +D A
Sbjct: 234 ------DLLPVVK-------------RREKFLDNYKLQTVLSNYGIENKVPHNAVSDARA 274
Query: 184 TLALV-WLIREK 194
T L LI+ +
Sbjct: 275 TKELAMKLIKNR 286
>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
Length = 896
Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 42/232 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPE 56
+++D ET G DV D + A +R+ E + + + LP +P
Sbjct: 512 EEIIVFDTETTGLDVFTDDIIEIAAMRIRGG-EIVGEPLDLYIETGKPILPKLGDKENPM 570
Query: 57 -AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
A++ + + L AE R + I+G+N +D N R
Sbjct: 571 YAIYHEKMAAGELLA----PAEALCRFLAYIGTYP--ILGHNA-SYDYNILDNCLRRYCN 623
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D +GN +D L ++R +P S+KL+ L + N+H
Sbjct: 624 D---TMQAHGNRCFDSLKLIRL---LAPSL----------HSYKLESLLETFRLTGQNSH 667
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHV 226
A DV AT++LV L EK R K + I + P +V
Sbjct: 668 QAIDDVGATVSLVRLCAEKA----------RTKQAQQLAFIRHPKVQPFANV 709
>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
Length = 1477
Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D ++ K+ + + KP +P
Sbjct: 2 YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHD-EFGKLVEHQDYLVKPEGFNIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ + A G+ AE + ++ S ++G NI FD F+R
Sbjct: 61 -DAERIHGISTELAEEQGISLAEVVEKFNEALSK-ARFVVG-QNIGFDVNIMGCEFHRLG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
D S + V+ + + ++ P G FKL +L + G+
Sbjct: 118 VD----------SPMSSMPVLDTCTEVTAELLKLPGGRGGK--FKLPNLTELHQYLFGVP 165
Query: 171 HVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FAEAHNATADVEAT 179
>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens ATCC 13124]
gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens ATCC 13124]
Length = 870
Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 39/202 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFI 60
+ +++D E+ G DV D Q A +++++ E ++ E F KP D + ++
Sbjct: 502 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPVKD------SYYV 555
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN--FYD 116
G + + R G + ++ + F ++ I+G+N +++D + RN
Sbjct: 556 HGFSDEMLQRIGEDK----EKVLKEFVEYSKDSIIVGHN-VQYDINILCSELERNNLGKP 610
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ +D LD+ R Y G ++KL++L+ +H +HD
Sbjct: 611 KFKT-------FYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHD 650
Query: 177 AKADVYATLALVWLIREKKPKL 198
A D+ AT L L+R K+
Sbjct: 651 AMDDIIATGEL--LVRAINKKI 670
>gi|312875685|ref|ZP_07735686.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
2053A-b]
gi|311088939|gb|EFQ47382.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
2053A-b]
Length = 933
Score = 63.7 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I EK
Sbjct: 162 LVTAKMLLKIIEK 174
>gi|315653552|ref|ZP_07906472.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
gi|315488914|gb|EFU78556.1| ATP-dependent DNA helicase [Lactobacillus iners ATCC 55195]
Length = 936
Score = 63.7 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 67
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 68 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 122 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 164
Query: 182 YATLALVWLIREK 194
T ++ I EK
Sbjct: 165 LVTAKMLLKIIEK 177
>gi|302191304|ref|ZP_07267558.1| Rad3-related DNA helicase [Lactobacillus iners AB-1]
Length = 933
Score = 63.7 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I EK
Sbjct: 162 LVTAKMLLKIIEK 174
>gi|259500615|ref|ZP_05743517.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
gi|259167999|gb|EEW52494.1| ATP-dependent DNA helicase [Lactobacillus iners DSM 13335]
Length = 936
Score = 63.7 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 14 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 67
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 68 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 122 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 164
Query: 182 YATLALVWLIREK 194
T ++ I EK
Sbjct: 165 LVTAKMLLKIIEK 177
>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
Length = 896
Score = 63.7 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 42/232 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------DPE 56
+++D ET G DV D + A +R+ E + + + LP +P
Sbjct: 512 EEIIVFDTETTGLDVFTDDIIEIAAMRIRGG-EIVGEPLDLYIETGKPILPKLGDKENPM 570
Query: 57 -AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
A++ + + L F I + P I+G+N +D N R
Sbjct: 571 YAIYHEKMAAGELLAPAEGLCRFLTYIG---TRP---ILGHNA-SYDYNILNNCLRRYCN 623
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D +GN +D L ++R +P S+KL+ L + N+H
Sbjct: 624 D---TMQAHGNRCFDSLKLIRL---LAPSL----------HSYKLESLLETFRLTGQNSH 667
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTPLVHV 226
A DV AT++LV L EK R K + I + P +V
Sbjct: 668 QAIDDVGATVSLVRLCAEKA----------RTKQAQQLAFIRHPKVQPFANV 709
>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 855
Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 53/210 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---EAV 58
+ V++D E+ G + D Q AG++++ + E IES + F +P ++
Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRF-------LIPKKSVGDSY 544
Query: 59 FITGITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+ G + Q +G + EF + +T I+G+N + FD +
Sbjct: 545 LVHGFSDQFLKENGENKKVVLKDFLEFIK---------DTVIVGHN-VTFDISILNSELE 594
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANG 168
R + + +D LD+ R Y S KL+ L+
Sbjct: 595 R-----LSLEKASFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFN 633
Query: 169 IEHVNAHDAKADVYAT--LALVWLIREKKP 196
E ++HDA D+ AT + + L + KP
Sbjct: 634 TETKSSHDAMDDILATKDVLMAMLKEKVKP 663
>gi|154504776|ref|ZP_02041514.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
gi|153794950|gb|EDN77370.1| hypothetical protein RUMGNA_02285 [Ruminococcus gnavus ATCC 29149]
Length = 300
Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 71/186 (38%), Gaps = 25/186 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
++YD ET G + D P + D Q + I + +P + P+A I GITP
Sbjct: 135 IVYDLETTGVNPWKDEPLSMCIM--DLQGKVIFEH---YFRP-EHTKSWPDAAAIHGITP 188
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+K + + + +I + F + +I YN I FDD + +
Sbjct: 189 EKVANE-SPMSFYRDQIQKIFDASD-ILITYNGINFDDSFLEAAGIK--LPEVMQ----- 239
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
DVMR D W G ++L D A G E AHDA DV ATL
Sbjct: 240 ------FDVMREYAWLIHD---WDEYHQGWRWWRLIDCAAYYGYEFS-AHDAAEDVKATL 289
Query: 186 ALVWLI 191
+
Sbjct: 290 YCYKKM 295
>gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 1474
Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 38/206 (18%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADD--YL 52
++I+D ET G D P Q A D +E + A D +
Sbjct: 2 YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFL---IAPDGFNI 58
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
P ++ I GI+ + A G+ E R ++ + ++G NI FD FYR
Sbjct: 59 PY-DSEKIHGISTELAQERGIPIQEALVRFNEALAKAK-FVVG-QNIGFDLNIMGCEFYR 115
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----G 168
+S + V+ + + ++ P G FKL +L + G
Sbjct: 116 YGVESPMAE----------MPVLDTCTEVTAELLKLPGGRGGR--FKLPNLTELHTYLFG 163
Query: 169 IEHVNAHDAKADVYAT----LALVWL 190
+ AH+A ADV AT L LV L
Sbjct: 164 VPFAEAHNATADVEATTRCFLELVRL 189
>gi|89894618|ref|YP_518105.1| hypothetical protein DSY1872 [Desulfitobacterium hafniense Y51]
gi|89334066|dbj|BAE83661.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 929
Score = 63.3 bits (153), Expect = 9e-08, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 36/184 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITGITPQ 66
D ET G D+ D +FA + ++ E+ E+ V + + + + +TGI+P+
Sbjct: 10 DIETTGFDIYNDEIIEFAALCIEEG-EEAEAFSVLISPRRQVPERI-----LRLTGISPE 63
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + G + A + +I F I+G+N + FD + +F N
Sbjct: 64 ELKQAGSLHA-YRDKILDLFQD--AIIVGHN-VEFDLGFLEQALTIHF----------EN 109
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATL 185
+ WD L++ P+ +KL DL + G+ AH A D A
Sbjct: 110 TLWDTLEI---ARILYPN----------MPKYKLGDLTKSLGLTPLEKAHRALFDARAAW 156
Query: 186 ALVW 189
L+
Sbjct: 157 ELLQ 160
>gi|295398912|ref|ZP_06808894.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
thermoglucosidasius C56-YS93]
gi|294978378|gb|EFG53974.1| DnaQ family exonuclease/DinG family helicase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 921
Score = 63.3 bits (153), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 32/198 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M + FVI D ET G DR Q V V+ + IE FF P D +P P
Sbjct: 1 MKDRFVIMDLETTGNVPKKGDRIIQLGMVVVENG-QIIERFSSFF-NPERD-IP-PFVQQ 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T I ++ + D V AE + ++ +N+ FD + + + + +
Sbjct: 57 LTNIN-EQMVADAPVFAEEAAKVVDMLQQSYFVA---HNVSFDLQFLQEELHMAGFPPF- 111
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+D + PD S+KL DLA I H H A +
Sbjct: 112 --------SGPTIDTVELARIVFPDA----------ESYKLADLAKLLCIAHDQPHHADS 153
Query: 180 DVYAT----LALVWLIRE 193
D T +AL+ +R+
Sbjct: 154 DAEVTAKLFIALLDRLRQ 171
>gi|312110481|ref|YP_003988797.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
Y4.1MC1]
gi|311215582|gb|ADP74186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
Y4.1MC1]
Length = 921
Score = 63.3 bits (153), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 32/198 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M + FVI D ET G DR Q V V+ + IE FF P D +P P
Sbjct: 1 MKDRFVIMDLETTGNVPKKGDRIIQLGMVVVENG-QIIERFSSFF-NPERD-IP-PFVQQ 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T I ++ + D V AE + ++ +N+ FD + + + + +
Sbjct: 57 LTNIN-EQMVADAPVFAEEAAKVVDMLQQSYFVA---HNVSFDLQFLQEELHMAGFPPF- 111
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+D + PD S+KL DLA I H H A +
Sbjct: 112 --------SGPTIDTVELARIVFPDA----------ESYKLADLAKLLCIAHDQPHHADS 153
Query: 180 DVYAT----LALVWLIRE 193
D T +AL+ +R+
Sbjct: 154 DAEVTAKLFIALLDRLRQ 171
>gi|312874151|ref|ZP_07734185.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
2052A-d]
gi|311090221|gb|EFQ48631.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
2052A-d]
Length = 933
Score = 63.3 bits (153), Expect = 9e-08, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 162 LVTAKMLLKIIDK 174
>gi|325912075|ref|ZP_08174473.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
UPII 143-D]
gi|325476025|gb|EGC79193.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus iners
UPII 143-D]
Length = 933
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 162 LVTAKMLLKIIDK 174
>gi|312872972|ref|ZP_07733032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
2062A-h1]
gi|311091494|gb|EFQ49878.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
2062A-h1]
Length = 933
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 162 LVTAKMLLKIIDK 174
>gi|312871734|ref|ZP_07731822.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
3008A-a]
gi|311092676|gb|EFQ51032.1| putative ATP-dependent DNA helicase DinG [Lactobacillus iners LEAF
3008A-a]
Length = 933
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFA-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 162 LVTAKMLLKIIDK 174
>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A2 str. Kyoto]
gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 855
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---EAV 58
+ V++D E+ G ++ D Q AG++++ + E IES + F +P ++
Sbjct: 492 NENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRF-------LIPKKSVGDSY 544
Query: 59 FITGITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+ G + Q +G + EF + +T I+G+N + FD +
Sbjct: 545 LVHGFSDQFLKENGENKKVVLKDFLEFIK---------DTVIVGHN-VTFDISILNSELE 594
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANG 168
R N + +D LD+ R Y S KL+ L+
Sbjct: 595 R-----LSLEKANFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFN 633
Query: 169 IEHVNAHDAKADVYAT--LALVWLIREKKP 196
E ++HDA D+ AT + + L + KP
Sbjct: 634 TETKSSHDAMDDILATKDVLMAMLKEKVKP 663
>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens C str. JGS1495]
gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens C str. JGS1495]
Length = 876
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 38/199 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFI 60
+ +++D E+ G DV D Q A +++++ E ++ E F KP D + ++
Sbjct: 508 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKFLKNKKPVKD------SYYV 561
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN--FYD 116
G + + R G + ++ + F ++ I+G+N +++D + RN
Sbjct: 562 HGFSDEMLQRIGEDK----EKVLKEFVEYSKDSIIVGHN-VQYDINILCSELERNNLGKP 616
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ +D LD+ R Y G ++KL++L+ +H +HD
Sbjct: 617 KFKT-------FYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHD 656
Query: 177 AKADVYATLALV-WLIREK 194
A D+ AT L+ I EK
Sbjct: 657 AMDDIIATGELLVRAINEK 675
>gi|194336729|ref|YP_002018523.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309206|gb|ACF43906.1| Exonuclease RNase T and DNA polymerase III [Pelodictyon
phaeoclathratiforme BU-1]
Length = 190
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 27/201 (13%)
Query: 5 FVIYDYETFGR-----DVALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++ +D ET G D R Q A + D + ++ S + KP +P
Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAII-KPEGFVIPS 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
AV I GI+ Q+AL +G + + ++ + + +NI FD+ + R
Sbjct: 61 -SAVQIHGISTQRALLEGKPLGQVLQSFYELVADAEVLVA--HNISFDEKIVGSELIRAG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA-LANGIEHVN 173
+ S + + P G +WP KL +L G
Sbjct: 118 MPNSLPSKRKICT---MESTTDFCAIKGPYGNKWP---------KLSELYFQLFGTVFNE 165
Query: 174 AHDAKADVYATLALVWLIREK 194
AH+A +D+ AT W ++ +
Sbjct: 166 AHNAASDIQATAKCFWELKRR 186
>gi|15618325|ref|NP_224610.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
CWL029]
gi|15835943|ref|NP_300467.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
gi|16752629|ref|NP_444893.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
gi|4376690|gb|AAD18554.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
gi|8163413|gb|AAF73657.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8978782|dbj|BAA98618.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
gi|269303286|gb|ACZ33386.1| exonuclease, DNA polymerase III, epsilon subunit family
[Chlamydophila pneumoniae LPCoLN]
Length = 237
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 58/181 (32%), Gaps = 36/181 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ YD ET G + DR + A D + + E+ P D EA I G
Sbjct: 9 LIFYDTETTGTQIERDRIIEIAAYNSVTDESFLTYVNPEI----PIPD-----EASKIHG 59
Query: 63 ITPQKALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
IT L E R+ F ++ ++ +NN FD R+ +
Sbjct: 60 ITTDAVLSAPKFPEAYEGFRK----FCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLT- 114
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D L + PD P + LQ L G AH A D
Sbjct: 115 -----NRTIDSLKWAQKY---RPDL---PKHN-------LQYLRQVYGFAENQAHRALDD 156
Query: 181 V 181
V
Sbjct: 157 V 157
>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
novyi NT]
Length = 1444
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 43/214 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
+ FV++D ET G D+ +F V++ + I+S F + +P + +T
Sbjct: 429 DTFVVFDLETTGFSSQYDKIIEFGAVKI-KNGNIIDSFSAF---VNPEIKIPY-KITELT 483
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD-SY 118
IT D V +AE ++ F T ++ +N+ FD + R +N D +
Sbjct: 484 SIT-----NDDVKDAETIDKVLPKFIKFAEGTVLVAHNS-NFDMSFIR----KNCKDLNI 533
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++ ++D + P+ +KL +A G+ N H A
Sbjct: 534 ECNYT-------VMDTIPLAKFLFPEL----------KRYKLNTIAKHLGVSLENHHRAV 576
Query: 179 ADVYAT----LALVWLIREKKPKLFEYLYDYRNK 208
D AT + L++E YL D NK
Sbjct: 577 DDAKATGDILVHCFKLLKEMN---ITYLDDLNNK 607
>gi|237732820|ref|ZP_04563301.1| DNA polymerase III subunit epsilon [Mollicutes bacterium D7]
gi|229384061|gb|EEO34152.1| DNA polymerase III subunit epsilon [Coprobacillus sp. D7]
Length = 224
Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 23/192 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---DPEAVFIT 61
+V++D ET G + DR + ++V + ++ C P P + +T
Sbjct: 41 YVVFDLETTGFNKKEDRIIEIGAIKV-KNGRVVDRFSTL-CAPIKGGKPMYISAKITEVT 98
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI L + E+E + + + +N ++FD + + R+ + +
Sbjct: 99 GIKNVDLLNQ-IPESEAVKNFMCWLGESK-ISVAHNGLKFDIPFLKEACKRS---NVEFK 153
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ + +LD M A + + + K + LA G+++ AH A D
Sbjct: 154 FTH------ILDTMLLSKALNY------VNNGNIPNNKQETLARYFGVDY-QAHRAVNDC 200
Query: 182 YATLALVWLIRE 193
A L + ++
Sbjct: 201 EALLKIFDKLKN 212
>gi|315637226|ref|ZP_07892446.1| exonuclease [Arcobacter butzleri JV22]
gi|315478498|gb|EFU69211.1| exonuclease [Arcobacter butzleri JV22]
Length = 247
Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 66/271 (24%), Positives = 101/271 (37%), Gaps = 40/271 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G DR QF + VD + K+E+ + P L EA+ + IT
Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNK-GKVEAFDELCSAPIPIKL---EAMEVHNIT 58
Query: 65 PQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P VE F +R+ + S N I +NI FD + + N Y
Sbjct: 59 PDLLENKPKAVETNFYKRLEELNSDENYLIA--HNINFDLDMIKKEGFENSYKLIDTLRC 116
Query: 124 NGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ DL + YA D ++ + GI + AHDA DV
Sbjct: 117 AKHLFSDLPYHRLQYLRYAL--DLYKFEENEASKY-----------GIT-IKAHDAIGDV 162
Query: 182 YAT-LALVWLI---REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS-N 236
L L L+ RE P L N + KL+++ TP+ + FG + N
Sbjct: 163 LVMKLFLSKLVGKCREVYPSL----------NPMEKLVEL-TTTPVFINTFKFGKYKGQN 211
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQD 267
+A + + +L DM+ D
Sbjct: 212 IEEVAKIDANYLNWMRTSMSDLDEDMKFTLD 242
>gi|294498159|ref|YP_003561859.1| DnaQ family exonuclease/DinG family helicase [Bacillus megaterium
QM B1551]
gi|294348096|gb|ADE68425.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
megaterium QM B1551]
Length = 933
Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/225 (23%), Positives = 79/225 (35%), Gaps = 38/225 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M FV+ D ET G D+ QFA V V + +E F P
Sbjct: 1 MNKRFVVVDLETTGHSPKQGDKMIQFAAVIV-EDGKIVERFSSF---LNPGMDIPPFITQ 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T I + E E S +I + + +N + FD + + Y+ ++
Sbjct: 57 LTNIQNDMVKDAPLFE-EISPKIIELLDD--AYFVAHN-VAFDLTFLQEELYQCGEETLY 112
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
NS D + P DG +KL LA IEH N H A +
Sbjct: 113 ------NSTVD---TVELARILLPTV-------DG---YKLSQLAEYLHIEHENPHQADS 153
Query: 180 DVYATLALVWLIREKK--------PKLFEYLYDYRNKNQLRKLID 216
D T ++ L+ EK +L Y K+++ +LI
Sbjct: 154 DAEVTARILLLLIEKLKKLPLTTLKQL--YALSLHFKSEIGELIQ 196
>gi|309807268|ref|ZP_07701238.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners LactinV 03V1-b]
gi|308166328|gb|EFO68537.1| exonuclease, DNA polymerase III, epsilon subunit family
[Lactobacillus iners LactinV 03V1-b]
Length = 233
Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEA-AKAQTFSFYAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFD-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 162 LVTAKMLLKIIDK 174
>gi|33241759|ref|NP_876700.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
TW-183]
gi|33236268|gb|AAP98357.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila
pneumoniae TW-183]
Length = 232
Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 58/181 (32%), Gaps = 36/181 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ YD ET G + DR + A D + + E+ P D EA I G
Sbjct: 4 LIFYDTETTGTQIERDRIIEIAAYNSVTDESFLTYVNPEI----PIPD-----EASKIHG 54
Query: 63 ITPQKALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
IT L E R+ F ++ ++ +NN FD R+ +
Sbjct: 55 ITTDAVLSAPKFPEAYEGFRK----FCGEDSILVAHNNDGFDFPLLGKECRRHSLEPLT- 109
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D L + PD P + LQ L G AH A D
Sbjct: 110 -----NRTIDSLKWAQKY---RPDL---PKHN-------LQYLRQVYGFAENQAHRALDD 151
Query: 181 V 181
V
Sbjct: 152 V 152
>gi|295395919|ref|ZP_06806104.1| 5'-3' exonuclease (including N-terminal domain of PolI)
[Brevibacterium mcbrellneri ATCC 49030]
gi|294971192|gb|EFG47082.1| 5'-3' exonuclease (including N-terminal domain of PolI)
[Brevibacterium mcbrellneri ATCC 49030]
Length = 536
Score = 62.5 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 31/194 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET GRD A + D + + ++ + +P EA + GIT +
Sbjct: 322 FDLETTGRDPHTAHIVSAALI--DMRTHETWEWLIY----PEGEIPA-EASAVHGITTEY 374
Query: 68 ALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY-RWSWDNG 125
A +G+ A+ +IHQ F+ CI+ +N Y +
Sbjct: 375 ARENGMPRAQAIAQIHQVFAERTPACIVAHN------------------APYDLTIFARE 416
Query: 126 NSRWDL-LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+++ L L I D P R T L + G+ NAHDA AD A+
Sbjct: 417 CAQYGLALPDFFVIDTLVIDKHAEPFRKGPRT---LDAVCARWGVSLDNAHDATADARAS 473
Query: 185 LALVWLIREKKPKL 198
+ I + P+L
Sbjct: 474 GLVALAIADAFPEL 487
>gi|225374652|ref|ZP_03751873.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
gi|225213511|gb|EEG95865.1| hypothetical protein ROSEINA2194_00271 [Roseburia inulinivorans DSM
16841]
Length = 228
Score = 62.1 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/254 (20%), Positives = 84/254 (33%), Gaps = 48/254 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
+V++D ET G D + + V+V F + + P P A +
Sbjct: 15 PDYVLFDLETTGTSCIYDEVIEISAVKVRS-----GKVVEEFSQLVNPKRPIPYAASMVN 69
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
I+ + E +F + + +F + ++G+N FD + R F
Sbjct: 70 HISDEMVA----NEPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLF------ 119
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D L V + + P+ W R +L DLA GI AH A D
Sbjct: 120 QQKLTNDYVDTLRVAKLCF---PE---WRHR-------RLSDLAEHYGISTRGAHRALTD 166
Query: 181 VYATLALVWLIREKKPKLFEYLYDY-----RNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
+ ++FEYL K Q ++ I + P+ +G FG
Sbjct: 167 C-----------KMNQQVFEYLAKELEKMPAAKKQSKEKICPECGLPMKKRNGRFGEFWG 215
Query: 236 NTALIAPVAWHPRY 249
P H
Sbjct: 216 CIGY--PDCRHTEN 227
>gi|224372263|ref|YP_002606635.1| exonuclease [Nautilia profundicola AmH]
gi|223589603|gb|ACM93339.1| exonuclease [Nautilia profundicola AmH]
Length = 293
Score = 62.1 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 41/226 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
VI D ET G + DR Q + + ++ +IE KP LP EA+ + I
Sbjct: 3 IVILDTETTG-NKEEDRIIQLSYLVLNENL-EIEEIHDELVKPP---LPISFEAMAVHHI 57
Query: 64 TPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T + ++ E +R+ + S N +I +N +FD +
Sbjct: 58 TNEMVEDKPLIKHTESYKRLKELNSPENLLVI--HNAKFDLDMLKK-------------- 101
Query: 123 DNGNSRWDLLDVMRAIYAFSPDG---IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ NS + L+D R + P+G +Q+ G K +D+ I+ +NAHDA
Sbjct: 102 EGFNSFFKLIDTFRVLKHLIPEGKFSLQYNRYALGLYK-KEKDICEKYNIQ-INAHDALG 159
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
DV L L LFEYL KN + +L+++ P++H
Sbjct: 160 DVIV-LGL----------LFEYLVTNFEKN-VEELVEL-TTKPVLH 192
>gi|189500655|ref|YP_001960125.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
phaeobacteroides BS1]
gi|189496096|gb|ACE04644.1| Exonuclease RNase T and DNA polymerase III [Chlorobium
phaeobacteroides BS1]
Length = 185
Score = 62.1 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 30/203 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVF 59
M+ + D ET G + A Q + + I C P D A+
Sbjct: 1 MSKKVLYIDVETTGTNPAKHGIIQIGAI---MEVSGIIAEELNLKCAPHSGADIDDHALT 57
Query: 60 ITG-----ITPQKALRDGVVEA-EFSRRIHQFFSVPNTCI-IGYNNIRFDDYYSRNIFYR 112
ITG +T + + ++ +++ +F R + + + C GYN + FD + + F
Sbjct: 58 ITGTSREELTHRMSSKEALLQFKQFLNRYVEQYDREDKCYPAGYN-VHFDLDFIQQWFKM 116
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG---ATSFKLQDLALANGI 169
+ S+ N R D L V+ G +KL+ + GI
Sbjct: 117 HGDKYGIGSYVNW-RRLDPLPVLFM------------KDFTGALHLPDYKLETVCRHYGI 163
Query: 170 EHVNAHDAKADVYATLA-LVWLI 191
AHDA +D+ AT L L+
Sbjct: 164 RLE-AHDAFSDIRATRELLTKLL 185
>gi|157737501|ref|YP_001490184.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
gi|157699355|gb|ABV67515.1| DNA polymerase III, epsilon subunit [Arcobacter butzleri RM4018]
Length = 247
Score = 62.1 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 66/271 (24%), Positives = 101/271 (37%), Gaps = 40/271 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G DR QF + VD + K+E+ + P L EA+ + IT
Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNK-GKVEAFDELCSAPIPIKL---EAMEVHNIT 58
Query: 65 PQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P VE F +R+ + S N I +NI FD + + N Y
Sbjct: 59 PDLLENKPKAVETNFYKRLEELNSDENYLIA--HNINFDLDMIKKEGFENSYKLIDTLRC 116
Query: 124 NGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ DL + YA D ++ + GI + AHDA DV
Sbjct: 117 AKHLFSDLPYHRLQYLRYAL--DLYKFEENEASKY-----------GIT-IKAHDAIGDV 162
Query: 182 YAT-LALVWLI---REKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS-N 236
L L L+ RE P L N + KL+++ TP+ + FG + N
Sbjct: 163 LVMKLFLSKLVGKCREVYPSL----------NPMEKLVEL-TTTPVFINTFKFGKYKGQN 211
Query: 237 TALIAPVAWHPRYKDSVIGCNLSGDMRVFQD 267
+A + + +L DM+ D
Sbjct: 212 IEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242
>gi|194468010|ref|ZP_03073996.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
100-23]
gi|194452863|gb|EDX41761.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
100-23]
Length = 954
Score = 62.1 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 30/181 (16%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G +V DR Q V V + E I E P + P ++ +TGI +
Sbjct: 23 DLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFETKI-NPREKI---PRSIVQLTGIEDK 77
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + E + + I+ + T + +N + FD + R Y S
Sbjct: 78 DVRKAPLFE-DIAGTIYSLLAE--TTFVAHN-VNFDFPFLNAELERAGYPSL-------- 125
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+D + P SF+L+DL + IEH + H A +D AT
Sbjct: 126 -SIPAIDTVTLSQILLPTA----------KSFRLRDLTSSLHIEHDHPHSAVSDAEATAE 174
Query: 187 L 187
L
Sbjct: 175 L 175
>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum NCTC 2916]
gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum NCTC 2916]
Length = 855
Score = 61.7 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/212 (21%), Positives = 80/212 (37%), Gaps = 57/212 (26%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----- 56
+ V++D E+ G + D Q AG++++ + E IES + F P+
Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFL---------TPKKSVGD 542
Query: 57 AVFITGITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+ + G + Q +G + EF + +T I+G+N + FD +
Sbjct: 543 SYLVHGFSDQFLKENGENKKVVLKDFLEFIK---------DTVIVGHN-VAFDISILNSE 592
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALA 166
R + + +D LD+ R Y S KL+ L+
Sbjct: 593 LER-----LSLEKASFKTYYDTLDIARRFY----------------PSLTNHKLETLSKL 631
Query: 167 NGIEHVNAHDAKADVYAT--LALVWLIREKKP 196
E ++HDA D+ AT + + L + KP
Sbjct: 632 FNTETKSSHDAMDDILATKDVLMAMLKEKVKP 663
>gi|309803980|ref|ZP_07698062.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
LactinV 11V1-d]
gi|308163899|gb|EFO66164.1| helicase, DnaQ family exonuclease/DinG family [Lactobacillus iners
LactinV 11V1-d]
Length = 933
Score = 61.7 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 70/193 (36%), Gaps = 32/193 (16%)
Query: 5 FVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
F + D ET G DR QF + D KI T F P P AV +T
Sbjct: 11 FAVVDLETTGTQIKQHDRIIQFGCAIIKD---RKITKTYSFLINPEKTI---PRAVENLT 64
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q+A + ++++I + NT + +N I FD + +
Sbjct: 65 GISNQEASKAQTFSF-YAKKIQEIL--ENTIFVAHN-INFDLPFLNYELINAGLSPFD-- 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P S+KLQD+ I+H N H A +D
Sbjct: 119 -------GKAIDTVELAQIAFPTI----------PSYKLQDITNTLHIKHANPHRADSDA 161
Query: 182 YATLALVWLIREK 194
T ++ I +K
Sbjct: 162 LVTAKMLLKIIDK 174
>gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
Length = 1462
Score = 61.7 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/213 (23%), Positives = 71/213 (33%), Gaps = 45/213 (21%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPKRWDAPLTDSDNWPRCIQIAWQLHDEMGNLIEH---------QDYLVR 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
PE A + GI+ A +G+ E + ++ T I N+ FD
Sbjct: 53 PEGFDIPYDAERVHGISTDLAREEGISLEEMLEKFNEALGK--TKFIVGQNLGFDVNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+R DS L V+ + + + P G FKL L +
Sbjct: 111 AELHRAGMDSQLLE----------LPVLDTCTETTAEMCRIPGGRGGK--FKLPTLTELH 158
Query: 168 GI----EHVNAHDAKADVYATLAL-VWLIREKK 195
AH+A ADV AT + L+R++
Sbjct: 159 EYLFDEPFGEAHNATADVEATTRCFLELVRKRS 191
>gi|115375897|ref|ZP_01463146.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
DW4/3-1]
gi|310819816|ref|YP_003952174.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
gi|115367075|gb|EAU66061.1| DNA polymerase III PolC-type, putative [Stigmatella aurantiaca
DW4/3-1]
gi|309392888|gb|ADO70347.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
Length = 219
Score = 61.7 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 60/193 (31%), Gaps = 23/193 (11%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITG 62
D ET G D + + A +RVD + + E +P PEA+ + G
Sbjct: 30 TLAFIDLETTGLDASRHEVLEVAILRVDARSLKVLAEYEAR-VQPTRLADAHPEALAVCG 88
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + RD + E + + T + G+N F F S
Sbjct: 89 YS-DEEWRDALPLREVLATVTPLLA--GTLVAGHNT----------SFDWGFLVEGYRST 135
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
+ D + + WP G S L LA G+ H A AD
Sbjct: 136 ELPLPSVD-------YHRLDTASLAWPLLATGEVESLSLNALAKHFGLHRPTPHRAMADA 188
Query: 182 YATLALVWLIREK 194
L + + +
Sbjct: 189 RCALEVARRLAVR 201
>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. ATCC 3502]
gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. Hall]
gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum A str. Hall]
Length = 855
Score = 61.7 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 51/209 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----- 56
+ V++D E+ G + D Q AG++++ + E IES + F P+
Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFL---------TPKKFVGD 542
Query: 57 AVFITGITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+ + G + Q +G + EF + +T I+G+N + FD +
Sbjct: 543 SYLVHGFSDQFLKENGENKKVVLKDFLEFIK---------DTVIVGHN-VAFDISILNSE 592
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
R + + +D LD+ R Y P+ KL+ L+
Sbjct: 593 LER-----LSLEKASFKTYYDTLDIARRFY---PNLTN----------HKLETLSKLFNT 634
Query: 170 EHVNAHDAKADVYAT--LALVWLIREKKP 196
E ++HDA D+ AT + + L + KP
Sbjct: 635 ETKSSHDAMDDILATKDVLMAMLKEKVKP 663
>gi|163782941|ref|ZP_02177936.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881621|gb|EDP75130.1| hypothetical protein HG1285_00160 [Hydrogenivirga sp. 128-5-R1-1]
Length = 215
Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 70/200 (35%), Gaps = 37/200 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
FV++D ET G D+ +R V+ + ES F KP + +V I
Sbjct: 38 TTFVVFDTETTGLDLRRAELVSIGALRVVNYSFNLSESFH-RFVKPKE---LTRVSVEIH 93
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GITP + + R+ + F V + ++G+N + FD +
Sbjct: 94 GITPHELEKKAESH----DRVLEDFMEYVRGSVLVGFN-VEFDRKIVEKYSLKVLGLPLL 148
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N R D+ + W R S K D+A GI V AH A
Sbjct: 149 ------NYRLDVFRL-------------WKKRGGREGSLK--DIAEELGIPVVGAHSALD 187
Query: 180 DVYAT----LALVWLIREKK 195
D Y T L L+ R
Sbjct: 188 DAYITALVFLKLLKRFRGAN 207
>gi|219669053|ref|YP_002459488.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
hafniense DCB-2]
gi|219539313|gb|ACL21052.1| DnaQ family exonuclease/DinG family helicase [Desulfitobacterium
hafniense DCB-2]
Length = 929
Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 36/184 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITGITPQ 66
D ET G D+ D +FA + ++ E+ E+ V + + + + +TGI+P+
Sbjct: 10 DIETTGFDIYNDEIIEFAALCIEEG-EEAEAFSVLISPRRQVPERI-----LRLTGISPE 63
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + G ++A + +I F I+G+N + FD + +F N
Sbjct: 64 ELKQAGSLQA-YRDKILDLFQD--AIIVGHN-VEFDLGFLEQALTIHF----------EN 109
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATL 185
+ WD L++ P+ +KL DL + G+ AH A D A
Sbjct: 110 TLWDTLEI---ARILYPN----------MPKYKLGDLTKSLGLTPLEKAHRALFDARAAW 156
Query: 186 ALVW 189
L+
Sbjct: 157 ELLQ 160
>gi|327183531|gb|AEA31978.1| hypothetical protein LAB52_05120 [Lactobacillus amylovorus GRL
1118]
Length = 298
Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 30/194 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA--DDYLPDPEAVFI 60
N F+ D ET G + + + ++ + E F+ + ++ +P+ + +
Sbjct: 128 NDFIAVDLETTGLNTSRSKIISIGAIK--ENLK--GEEEQFY-RLIKINEAIPE-KITEL 181
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TG+T + GV + +F I+GYN + FD+ + + +
Sbjct: 182 TGLTSKVLNERGVTLEQALNEFRKFVGSE--MIVGYN-LSFDNNFLLKAYLSIGQRALV- 237
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
NS DL+ +++ F + + L+ + GI++ N H+A +D
Sbjct: 238 -----NSMKDLMGIVKEKDIFLDN-------------YDLETVLKEYGIKNDNRHNALSD 279
Query: 181 VYATLALVWLIREK 194
AT L + +K
Sbjct: 280 ARATFKLAKELNKK 293
>gi|116514018|ref|YP_812924.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093333|gb|ABJ58486.1| Rad3-related DNA helicase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 930
Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 39/196 (19%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
F + D ET G DR QF + D + + P P A
Sbjct: 8 ESFAVVDLETTGTRKEEGDRIIQFGCAIVKD------GEVVKTYSFMMN---PHRKIPLA 58
Query: 58 VF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
V +TGI QK + D ++ +I + T + +N + FD + ++
Sbjct: 59 VTNLTGID-QKMVADQADFKHYAPKIREILQD--TVFVAHN-VNFDFPFLNYELTNAGFE 114
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ D +++ + + P+ S+KL+DL + I+H N H
Sbjct: 115 ALT------CKAVDTVELAKIAF---------PT----LPSYKLRDLTASLEIKHANPHK 155
Query: 177 AKADVYAT-LALVWLI 191
A +D Y T + L+ +I
Sbjct: 156 ADSDAYGTAVLLLKII 171
>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
Length = 1451
Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 29/182 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
+VI+D ET G D+ + A V++++ I++ E F P + I
Sbjct: 432 TYVIFDTETTGLSAQYDKVIELAAVKMEKG-NVIDTFEEF---IDPG---HPLSQTTINL 484
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + G E R+ + F + I+G+N FD + + R+ + + W
Sbjct: 485 TSITDDMVRGSKSEEEVFRLFKEFCK-DCIIVGHNA-TFDVDFMNTGYERHNMEMIQEPW 542
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D + P+ F+L LA I+ + H A D
Sbjct: 543 ---------IDTLPLARYLYPE----------MKGFRLNTLAKKLNIKLEHHHRAIYDAE 583
Query: 183 AT 184
AT
Sbjct: 584 AT 585
>gi|148544145|ref|YP_001271515.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri
DSM 20016]
gi|184153518|ref|YP_001841859.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
gi|227364574|ref|ZP_03848635.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
reuteri MM2-3]
gi|325682311|ref|ZP_08161828.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
gi|148531179|gb|ABQ83178.1| DnaQ family exonuclease/DinG family helicase, putative
[Lactobacillus reuteri DSM 20016]
gi|183224862|dbj|BAG25379.1| ATP-dependent helicase [Lactobacillus reuteri JCM 1112]
gi|227070411|gb|EEI08773.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
reuteri MM2-3]
gi|324978150|gb|EGC15100.1| ATP-dependent DNA helicase DinG [Lactobacillus reuteri MM4-1A]
Length = 954
Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 31/190 (16%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G +V DR Q V V + E I E P + P ++ +TGI +
Sbjct: 23 DLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFETKI-NPREKI---PRSIVQLTGIEDK 77
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + E + + I+ + T + +N + FD + R Y S
Sbjct: 78 DVRKAPLFE-DIAGTIYSLLAE--TTFVAHN-VNFDFPFLNAELERAGYPSL-------- 125
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+D + P SF+L+DL + IEH + H A +D AT
Sbjct: 126 -SIPAIDTVTLSQILLPTA----------KSFRLRDLTSSLHIEHDHPHSAVSDAEATAD 174
Query: 187 LV-WLIREKK 195
L+ L++ +
Sbjct: 175 LLNDLLKRVQ 184
>gi|221195007|ref|ZP_03568063.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
rimae ATCC 49626]
gi|221184910|gb|EEE17301.1| putative exonuclease, RNase T and DNA polymerase III [Atopobium
rimae ATCC 49626]
Length = 251
Score = 61.4 bits (148), Expect = 4e-07, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 70/187 (37%), Gaps = 28/187 (14%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ D ET G D D Q + + D + I E C P P+ A I
Sbjct: 20 AEKILCIDTETTGLDPRKDEIIQLSMI--DGHGKSI--FESLICPPTRKRWPN--AQEIN 73
Query: 62 GITPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GITP+ + G E E + ++ + + + I+GYN + FD +D
Sbjct: 74 GITPK--MVKGKPELEEVADQVQEAINAAD-LIVGYN-LPFDISMMEAE----GFDFSDK 125
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+DL++ ++ W S D KL A GI+ AHDA D
Sbjct: 126 EQ------YDLMEDYAQVFGR------WSSAKDDYLWTKLTTAAKHYGIK-FAAHDAGED 172
Query: 181 VYATLAL 187
AT+ L
Sbjct: 173 ARATIKL 179
>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
Length = 870
Score = 61.4 bits (148), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 42/201 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
+ +++D E+ G DV D Q A +++++ E ++ E F L + ++V
Sbjct: 502 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKF--------LKNKKSVKDSY 553
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN--F 114
++ G + + R G E E ++ + F ++ I+G+N +++D + RN
Sbjct: 554 YVHGFSDEMLQRIGE-EKE---KVLKEFVEYSKDSIIVGHN-VQYDINILCSELERNNLG 608
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
++ +D LD+ R Y G ++KL++L+ +H +
Sbjct: 609 KPKFKT-------FYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPS 648
Query: 175 HDAKADVYATLALV-WLIREK 194
HDA D+ AT L+ I EK
Sbjct: 649 HDAMDDIIATGELLVRAINEK 669
>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius
CECT 5713]
Length = 1444
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 29/182 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
+VI+D ET G D+ + A V++++ I++ E F P + I
Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKMEKG-NVIDTFEEF---IDPG---HPLSQTTINL 477
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + G E R+ + F + I+G+N FD + + R+ + + W
Sbjct: 478 TSITDDMVRGSKSEEEVFRLFKEFCK-DCIIVGHNA-TFDVDFMNTGYERHNMEMIQEPW 535
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D + P+ F+L LA I+ + H A D
Sbjct: 536 ---------IDTLPLARYLYPE----------MKGFRLNTLAKKLNIKLEHHHRAIYDAE 576
Query: 183 AT 184
AT
Sbjct: 577 AT 578
>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 1444
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 29/182 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
+VI+D ET G D+ + A V++++ I++ E F P + I
Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKMEKG-NVIDTFEEF---IDPG---HPLSQTTINL 477
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + G E R+ + F + I+G+N FD + + R+ + + W
Sbjct: 478 TSITDDMVRGSKSEEEVFRLFKEFCK-DCIIVGHNA-TFDVDFMNTGYERHNMEMIQEPW 535
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D + P+ F+L LA I+ + H A D
Sbjct: 536 ---------IDTLPLARYLYPE----------MKGFRLNTLAKKLNIKLEHHHRAIYDAE 576
Query: 183 AT 184
AT
Sbjct: 577 AT 578
>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
Length = 1444
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 29/182 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
+VI+D ET G D+ + A V++++ I++ E F P + I
Sbjct: 425 TYVIFDTETTGLSAQYDKVIELAAVKMEKG-NVIDTFEEF---IDPG---HPLSQTTINL 477
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + G E R+ + F + I+G+N FD + + R+ + + W
Sbjct: 478 TSITDDMVRGSKSEEEVFRLFKEFCK-DCIIVGHNA-TFDVDFMNTGYERHNMEMIQEPW 535
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D + P+ F+L LA I+ + H A D
Sbjct: 536 ---------IDTLPLARYLYPE----------MKGFRLNTLAKKLNIKLEHHHRAIYDAE 576
Query: 183 AT 184
AT
Sbjct: 577 AT 578
>gi|227894158|ref|ZP_04011963.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
gi|227864030|gb|EEJ71451.1| DNA polymerase III [Lactobacillus ultunensis DSM 16047]
Length = 318
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+++ + D ET G DR + V+V + ++ P ++ +P A
Sbjct: 31 SNYTMLDIETTGLSPYRDRITELGAVKVRNN-QIVDQYTNLVKFPKNNKVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ + +G+ + + +F IIGYN + FD + + +
Sbjct: 87 NGITEEQIVNEGIPAEQAIKEFREFIGDDP--IIGYN-VNFDLNFL-YDLSQKYNLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + RA Y P +L D GI V H AD
Sbjct: 142 ----NNDYVDVLRLARAYY---------PRERHN----RLIDCMQRAGIAQVEQHHGLAD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|153872366|ref|ZP_02001282.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
gi|152071167|gb|EDN68717.1| Exodeoxyribonuclease I [Beggiatoa sp. PS]
Length = 178
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 3/120 (2%)
Query: 322 KRCLENLTLLRQQTNLRDRFKAIYNKPYTS--SSQDVDSQLY-DGFFADVDRQIMDRILR 378
EN L+ T + + + + D+++ LY + F + + +
Sbjct: 41 ALVEENKNWLQSHTEIFRKIIQYHQEFRYPKIPDLDIEAALYQNDFLSASELAKCRQFHA 100
Query: 379 TAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKN 438
+ F D L +L R RN+P L +D+ ++ ++ + + Y +
Sbjct: 101 ATLPDKIEMVTQFEDIDLRKLASRLLCRNYPDNLPPMLTRDFEDYVWRVNPENEEDAYFD 160
>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum Ba4 str. 657]
gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum Ba4 str. 657]
Length = 855
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 49/195 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----- 56
+ V++D E+ G + D Q AG++++ + E IES + F +P+
Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINNKGEAIESFQRFL---------NPKKSVGD 542
Query: 57 AVFITGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ + G + Q +G + +F + I T I+G+N + FD + R
Sbjct: 543 SYLVHGFSDQFLKENGENKKVVLKDFLKFIKD------TVIVGHN-VTFDISILNSELER 595
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANGI 169
+ + +D LD+ R Y S KL+ L+
Sbjct: 596 -----LSLEKASFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFNT 634
Query: 170 EHVNAHDAKADVYAT 184
E ++HDA D+ AT
Sbjct: 635 ETKSSHDAMDDILAT 649
>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens B str. ATCC 3626]
gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens B str. ATCC 3626]
Length = 870
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 38/199 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFI 60
+ +++D E+ G DV D Q A ++++++ E ++ E F KP D + ++
Sbjct: 502 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVKD------SYYV 555
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN--FYD 116
G + + R G + ++ + F ++ I+G+N +++D + RN
Sbjct: 556 HGFSDEMLQRIGEDK----EKVLKEFVEYSKDSIIVGHN-VQYDINILCSELERNNLGKP 610
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ +D LD+ R Y G ++KL++L+ +H +HD
Sbjct: 611 KFKT-------FYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHD 650
Query: 177 AKADVYATLALV-WLIREK 194
A D+ AT L+ I EK
Sbjct: 651 AMDDIIATGELLVRAINEK 669
>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens D str. JGS1721]
gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens D str. JGS1721]
Length = 876
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 38/199 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFI 60
+ +++D E+ G DV D Q A ++++++ E ++ E F KP D + ++
Sbjct: 508 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVKD------SYYV 561
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN--FYD 116
G + + R G + ++ + F ++ I+G+N +++D + RN
Sbjct: 562 HGFSDEMLQRIGEDK----EKVLKEFVEYSKDSIIVGHN-VQYDINILCSELERNNLGKP 616
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ +D LD+ R Y G ++KL++L+ +H +HD
Sbjct: 617 KFKT-------FYDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHD 656
Query: 177 AKADVYATLALV-WLIREK 194
A D+ AT L+ I EK
Sbjct: 657 AMDDIIATGELLVRAINEK 675
>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
Length = 855
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 49/195 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----- 56
+ V++D E+ G + D Q AG++++ + E IES + F +P+
Sbjct: 492 NENVVVFDVESTGINTTEDEIVQIAGIKINSKGEAIESFQRFL---------NPKKSVGD 542
Query: 57 AVFITGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ + G + Q +G + +F + I T I+G+N + FD + R
Sbjct: 543 SYLVHGFSDQFLKENGENKKVVLKDFLKFIKD------TVIVGHN-VTFDISILNSELER 595
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANGI 169
+ + +D LD+ R Y S KL+ L+
Sbjct: 596 -----LSLEKASFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFNT 634
Query: 170 EHVNAHDAKADVYAT 184
E ++HDA D+ AT
Sbjct: 635 ETKSSHDAMDDILAT 649
>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
Length = 872
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 39/202 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
++ +++D E+ G DV D Q A +++++ E I+S E F L + ++V
Sbjct: 495 DNIIVFDVESTGTDVTEDEIIQIAAIKINKYGEVIDSFEKF--------LKNKKSVESSF 546
Query: 60 -ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ G + + G + +++ + F I+G+N +++D + YRN D
Sbjct: 547 KVHGFSDEFLNEKGEDK----KKVLKEFIDFSKGAVIVGHN-VQYDINILNSELYRNNLD 601
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +D LD+ R Y P+ +KL+ L+ ++ +HD
Sbjct: 602 -----GTKFKAFYDTLDIYRRFYTSLPN-------------YKLETLSKIFETKNKPSHD 643
Query: 177 AKADVYATLALVWLIREKKPKL 198
A D+ AT L L+R L
Sbjct: 644 AMDDILATSDL--LVRAINENL 663
>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum B1 str. Okra]
gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum B1 str. Okra]
Length = 855
Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---EAV 58
+ V++D E+ G ++ D Q AG++++ + E IES + F +P ++
Sbjct: 492 NENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRF-------LIPKKSVGDSY 544
Query: 59 FITGITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+ G + Q +G + EF + +T I+G+N + FD +
Sbjct: 545 LVHGFSDQFLKENGENKKVVLKDFLEFIK---------DTVIVGHN-VTFDISILNSELE 594
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANG 168
R + + +D LD+ R Y S KL+ L+
Sbjct: 595 R-----LSLEKASFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFN 633
Query: 169 IEHVNAHDAKADVYAT--LALVWLIREKKP 196
E ++HDA D+ AT + + L + KP
Sbjct: 634 TETKSSHDAMDDILATKDVLMAMLKEKVKP 663
>gi|256831880|ref|YP_003160607.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
DSM 20603]
gi|256685411|gb|ACV08304.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
DSM 20603]
Length = 238
Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 66/196 (33%), Gaps = 23/196 (11%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D A DR A V + +++ + P D EA I GIT +
Sbjct: 11 FDTETTGVDTAHDRVVTAALVLRTGEVTTVDTWLIDPGVPIPD-----EAARIHGITTEY 65
Query: 68 ALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A+ G + + RI S ++ +N FD R+ +
Sbjct: 66 AVEHGANPVDALSVIADRIVDHMSQ-GWALVAFNA-TFDVCIVEAELARHGLPTLAQRLG 123
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVY 182
P + KL +L G+E H A ADV
Sbjct: 124 GP-----------VAPVIDPLVLDRAVDRYRRGQRKLANLCSEYGVEDTGTLHTADADVV 172
Query: 183 ATLALVWLIREKKPKL 198
ATL ++ + + P+L
Sbjct: 173 ATLDVLERMVGRHPRL 188
>gi|212551002|ref|YP_002309319.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549240|dbj|BAG83908.1| DNA polymerase III epsilon subunit [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 258
Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/213 (21%), Positives = 75/213 (35%), Gaps = 34/213 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
V +D ET G ++ DR + + ++V + E+ + + +P P EA I GI
Sbjct: 9 IVFFDLETTGTNIISDRIVEISYLKVMPN----DEKEIKTRRINPE-IPIPKEASDIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + + ++ + + GYN+ RFD F R D W+
Sbjct: 64 TNEDV--KNALPFKAIAKLLAS-QIEGCDLAGYNSNRFDIPILAEEFLRAGID-VDWTKQ 119
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+DV + P + L L + NAH A D A
Sbjct: 120 K------FVDVQTIFHKKEPRTL-------------LAALKFYCNRDLENAHSAAEDAKA 160
Query: 184 TLALVWLIREKKPKL-----FEYLYDYRNKNQL 211
T ++ +K P L F Y NK +
Sbjct: 161 TYEVLKAQLDKYPDLQNDIIFLSNYSSFNKKNV 193
>gi|325686250|gb|EGD28293.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 930
Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 41/197 (20%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
F + D ET G DR QF + D + + P P A
Sbjct: 8 ESFAVVDLETTGTRKEEGDRIIQFGCAIVKD------GEVVKTYSFMMN---PHRKIPLA 58
Query: 58 VFITGIT-PQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+T +T + + G + ++ +I + T + +N + FD + +
Sbjct: 59 --VTNLTGIDQKMVAGQADFKHYAPKIREILQD--TVFVAHN-VNFDFPFLNYELTNAGF 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ D +++ + + P+ S+KL+DL + I+H N H
Sbjct: 114 EALT------CKAVDTVELAKIAF---------PT----LPSYKLRDLTASLEIKHANPH 154
Query: 176 DAKADVYAT-LALVWLI 191
A +D Y T + L+ +I
Sbjct: 155 KADSDAYGTAVLLLKII 171
>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum F str. Langeland]
gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
botulinum F str. Langeland]
Length = 855
Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---EAV 58
+ V++D E+ G ++ D Q AG++++ + E IES + F +P ++
Sbjct: 492 NENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRF-------LIPKKSVGDSY 544
Query: 59 FITGITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+ G + Q +G + EF + +T I+G+N + FD +
Sbjct: 545 LVHGFSDQFLKENGENKKVVLKDFLEFIK---------DTVIVGHN-VTFDISILNSELE 594
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANG 168
R + + +D LD+ R Y S KL+ L+
Sbjct: 595 R-----LSLEKASFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFN 633
Query: 169 IEHVNAHDAKADVYAT--LALVWLIREKKP 196
E ++HDA D+ AT + + L + KP
Sbjct: 634 TETKSSHDAMDDILATKDVLMAMLKEKVKP 663
>gi|315038988|ref|YP_004032556.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
gi|325957414|ref|YP_004292826.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
gi|312277121|gb|ADQ59761.1| DNA polymerase III [Lactobacillus amylovorus GRL 1112]
gi|325333979|gb|ADZ07887.1| DNA polymerase III [Lactobacillus acidophilus 30SC]
gi|327184122|gb|AEA32569.1| DNA polymerase III [Lactobacillus amylovorus GRL 1118]
Length = 318
Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+++ + D ET G DR + V+V R + ++ P ++ +P A
Sbjct: 31 SNYTMLDIETTGLSPYRDRITELGAVKV-RNGQIVDQYTNLIKFPKNNKVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ + +G+ + + +F IIGYN + FD + + +
Sbjct: 87 NGITEEQIVNEGIPAEQAIKEFREFIDD--DIIIGYN-VNFDLNFL-YDLSQKYKLPIL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + RA Y P +L D GI V H AD
Sbjct: 142 ----NNDYVDVLRLARAYY---------PRERHN----RLIDCMQRAGIAQVEEHHGLAD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|295835840|ref|ZP_06822773.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
gi|197698852|gb|EDY45785.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
Length = 239
Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 18/194 (9%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A +R+D ++ EA I GI +
Sbjct: 11 FDLETTGTDVEHDRVVTAAVIRLDASGAVAQTRTWL---LDPGIEIPAEATAIHGIPTAR 67
Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
A +G I + + T ++ N R+D R+ +
Sbjct: 68 ARAEGAPARGAVAEITEALAAGLRAGTPLV-VMNARYDLSLLDRECRRHGVPALA-ELLG 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
G + ++ +A S L L G+ +AHDA++D A
Sbjct: 126 GEPAPVVDPLVLDKHADRYR----------RGSRVLAALCEHYGVRLDSAHDARSDALAA 175
Query: 185 LALVWLIREKKPKL 198
L + + P+L
Sbjct: 176 TLLARSLGARHPRL 189
>gi|300812428|ref|ZP_07092858.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496595|gb|EFK31687.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 930
Score = 60.6 bits (146), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 41/196 (20%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV 58
F + D ET G DR QF + D + + P P A
Sbjct: 9 SFAVVDLETTGTRKEEGDRIIQFGCAIVKD------GEVVKTYSFMMN---PHRKIPLA- 58
Query: 59 FITGIT-PQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+T +T + + G + ++ +I + T + +N + FD + ++
Sbjct: 59 -VTNLTGIDQKMVAGQADFKHYAPKIREILQD--TVFVAHN-VNFDFPFLNYELTNAGFE 114
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ D +++ + + P+ S+KL+DL + I+H N H
Sbjct: 115 ALT------CKAVDTVELAKIAF---------PT----LPSYKLRDLTASLEIKHANPHK 155
Query: 177 AKADVYAT-LALVWLI 191
A +D Y T + L+ +I
Sbjct: 156 ADSDAYGTAVLLLKII 171
>gi|166032846|ref|ZP_02235675.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
27755]
gi|166027203|gb|EDR45960.1| hypothetical protein DORFOR_02562 [Dorea formicigenerans ATCC
27755]
Length = 232
Score = 60.6 bits (146), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 38/207 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +V +D ET G + + ++V + ++ + F +P +P P +
Sbjct: 1 MLKSYVAFDIETTGLSPEHNEIIEIGALKVREG-KVVDRF-IRFIEPEAG-IP-PMITQL 56
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT G EF F +T IG+N ++FD F +
Sbjct: 57 TGITNDMVEGAGNCGEVLPEFL-----EFCERDTL-IGHN-VQFD-----FSFVKTKAKE 104
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+++D+ D L + + ++A P S KL L IE+V AH A
Sbjct: 105 LGYTYDH--MGIDTLKIAKVVHADLP-------------SRKLGALCEYYHIENVAAHRA 149
Query: 178 KADVYATLA----LVWLIREKKPKLFE 200
D AT + EK+PK+F+
Sbjct: 150 YHDALATAKLYQSMAHFYEEKEPKVFK 176
>gi|318076131|ref|ZP_07983463.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
Length = 384
Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 61/195 (31%), Gaps = 20/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A +R+D + T + EA I GI +
Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSS-GTVAHTRTWL--LDPGVEIPAEATAIHGIPTAR 67
Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR-WSWD 123
A DG I + + T ++ N R+D R+ +
Sbjct: 68 ARADGAPARGAVAEITEALAAELRAGTPLV-VMNARYDLSLLDRECRRHGVPALAELLGA 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D ++ +A S L L G+ AHDA++D A
Sbjct: 127 EPAPVID--PLVLDKHADRYR----------RGSRVLAALCAHYGVRLDTAHDARSDALA 174
Query: 184 TLALVWLIREKKPKL 198
L + P L
Sbjct: 175 ATLLARSLGAHHPTL 189
>gi|218513681|ref|ZP_03510521.1| DNA polymerase III subunit epsilon [Rhizobium etli 8C-3]
Length = 229
Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D +DR + G+ + + +T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINPGDQKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ L+D AE + I FF +N FD + F R
Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWIA---HNATFDMGFINAEFARIGLPPILPE---- 113
Query: 126 NSRWDLLDVMRAIYAFSPDGI 146
D L + R + P+ +
Sbjct: 114 -RVVDTLSMARRKHPMGPNSL 133
>gi|15835150|ref|NP_296909.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270285322|ref|ZP_06194716.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270289339|ref|ZP_06195641.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
gi|301336719|ref|ZP_07224921.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
gi|8163241|gb|AAF73567.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
Nigg]
Length = 232
Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 60/189 (31%), Gaps = 44/189 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ YD ET G + DR + A ++ + + E +P P EA
Sbjct: 2 PDLIFYDTETTGTQIDKDRIVEIAAYNGTTGESFQTLVNPE----------IPIPAEATK 51
Query: 60 ITGITPQK-ALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I GIT + A EA +FS F + ++ +NN FD R+
Sbjct: 52 IHGITTSEVANAPKFPEAYQQFSD-----FCGTDNILVAHNNNAFDYPLLLRECRRHGLP 106
Query: 117 -SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR-DDGATSFKLQDLALANGIEHVNA 174
+ D ++W + LQ L G E NA
Sbjct: 107 EPQLRTI---------------------DSLKWAKKYRTDLPQHSLQYLRQVYGFEENNA 145
Query: 175 HDAKADVYA 183
H A DV
Sbjct: 146 HRALDDVIT 154
>gi|116249771|ref|YP_765609.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254419|emb|CAK05493.1| putative DNA polymerase subunit [Rhizobium leguminosarum bv. viciae
3841]
Length = 240
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/180 (22%), Positives = 58/180 (32%), Gaps = 33/180 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQW---EKIESTEVFFCKPADDYLPDPEAVFITG 62
+I+D ET G D DR + G+ + + I D P+A+ + G
Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFIN-----PGDQKVHPDALAVHG 58
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + L+D AE + +I FF +N FD + F R
Sbjct: 59 IT-DEFLKDKQPFAEVAEQILTFFGDAKWIA---HNATFDMGFINAEFARIGLPPILPE- 113
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKAD 180
D L + R + P+ L L GI H H A D
Sbjct: 114 ----RVLDTLSMARRKHPMGPNS--------------LDALCRRYGIDNSHRTKHGALLD 155
>gi|328948895|ref|YP_004366232.1| DNA polymerase III subunit epsilon [Treponema succinifaciens DSM
2489]
gi|328449219|gb|AEB14935.1| DNA polymerase III, epsilon subunit [Treponema succinifaciens DSM
2489]
Length = 216
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 67/192 (34%), Gaps = 24/192 (12%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
FV +D ET G + + V+ + I KP + LP FI
Sbjct: 20 KTFVAFDTETTGLKAEKEFIIEIGAVKFNCD-GIIGEPFDILIKPPIE-LPQ----FIKD 73
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T IT K + E + F T ++ +N +FD + + R +
Sbjct: 74 LTHIT-DKMISCCPCAKEAVPQFLNFVGGKETVLVAHNA-QFDLGFINSELKRFSHPELP 131
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N D L+ R Y PD I+ + +KLQ LA GIE AH A
Sbjct: 132 ------NVCIDTLNASRWAY---PDFIK----EQEKGQYKLQSLAKRFGIEAKAAHRAND 178
Query: 180 DVYATLALVWLI 191
D + + I
Sbjct: 179 DARLCMEIFKRI 190
>gi|239631428|ref|ZP_04674459.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239525893|gb|EEQ64894.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 931
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 39/194 (20%)
Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV-F 59
F + D ET G DR QF + + + PD P A+
Sbjct: 10 FAVVDLETTGTSVKDGDRMIQFGC-----ALMQHGKIIQTISQLVN---PDRSVPVAIQR 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TG+ P + + E E ++ +HQ + T + +N + FD + F R +
Sbjct: 62 LTGLDPNRLVAAPYFE-EIAKTLHQLLTD--TVFVAHN-VNFDYPFLNAEFERVGLPKLQ 117
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D + P+ +SF+L DL IEH N H A +
Sbjct: 118 LA---------AIDTVELAQILLPEI----------SSFRLPDLTSYLQIEHDNPHQADS 158
Query: 180 DVYATLALVWLIRE 193
D +T L+R+
Sbjct: 159 DAIST---AKLLRQ 169
>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
13]
Length = 870
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 36/198 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFI 60
+ +++D E+ G DV D Q A ++++++ E ++ E F KP D + ++
Sbjct: 502 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVKD------SYYV 555
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYR-NFYDS 117
G + + R G + ++ + F ++ I+G+N +++D + R N
Sbjct: 556 HGFSDEMLQRIGEDK----EKVLKEFVEYSKDSIIVGHN-VQYDINILCSELERSNLGKP 610
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ +D LD+ R Y G ++KL++L+ +H +HDA
Sbjct: 611 KFKTF------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSHDA 651
Query: 178 KADVYATLALV-WLIREK 194
D+ AT L+ I EK
Sbjct: 652 MDDIIATGELLVRAINEK 669
>gi|227535024|ref|ZP_03965073.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227187339|gb|EEI67406.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 931
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 39/194 (20%)
Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV-F 59
F + D ET G DR QF + + + PD P A+
Sbjct: 10 FAVVDLETTGTSVKDGDRMIQFGC-----ALMQHGKIIQTISQLVN---PDRSVPVAIQR 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TG+ P + + E E ++ +HQ + T + +N + FD + F R +
Sbjct: 62 LTGLDPNRLVAAPYFE-EIAKTLHQLLTD--TVFVAHN-VNFDYPFLNAEFERVGLPKLQ 117
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D + P+ +SF+L DL IEH N H A +
Sbjct: 118 LA---------AIDTVELAQILLPEI----------SSFRLPDLTSYLQIEHDNPHQADS 158
Query: 180 DVYATLALVWLIRE 193
D +T L+R+
Sbjct: 159 DAIST---AKLLRQ 169
>gi|116494972|ref|YP_806706.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
gi|116105122|gb|ABJ70264.1| Rad3-related DNA helicase [Lactobacillus casei ATCC 334]
Length = 928
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 39/194 (20%)
Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV-F 59
F + D ET G DR QF + + + PD P A+
Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGC-----ALMQHGKIIQTISQLVN---PDRSVPVAIQR 58
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TG+ P + + E E ++ +HQ + T + +N + FD + F R +
Sbjct: 59 LTGLDPNRLVAAPYFE-EIAKTLHQLLTD--TVFVAHN-VNFDYPFLNAEFERVGLPKLQ 114
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D + P+ +SF+L DL IEH N H A +
Sbjct: 115 LA---------AIDTVELAQILLPEI----------SSFRLPDLTSYLQIEHDNPHQADS 155
Query: 180 DVYATLALVWLIRE 193
D +T L+R+
Sbjct: 156 DAIST---AKLLRQ 166
>gi|15963758|ref|NP_384111.1| DNA polymerase III subunit epsilon [Sinorhizobium meliloti 1021]
gi|307302561|ref|ZP_07582318.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
gi|307316108|ref|ZP_07595552.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
gi|15072933|emb|CAC41392.1| Probable DNA polymerase III, epsilon chain [Sinorhizobium meliloti
1021]
gi|306897948|gb|EFN28690.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti AK83]
gi|306903231|gb|EFN33821.1| DNA polymerase III, epsilon subunit [Sinorhizobium meliloti BL225C]
Length = 242
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 15/143 (10%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + G+ ++ Q+ T + P + + PEA+ + GIT
Sbjct: 4 IIFDTETTGLDNREDRVIEIGGIELENQF-PTGRTIHIYINPGERKV-HPEALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L+D A+ ++ I FF + +N FD + F R
Sbjct: 61 DEFLKDKPPFADVAQEIVDFFGDARWVA-----HNATFDIGFINAEFERLGLPPI----- 110
Query: 124 NGNSRWDLLDVMRAIYAFSPDGI 146
+ D L + R + P+ +
Sbjct: 111 GSDRVIDTLALARRKHPMGPNSL 133
>gi|301066539|ref|YP_003788562.1| Rad3-like DNA helicase [Lactobacillus casei str. Zhang]
gi|300438946|gb|ADK18712.1| Rad3-related DNA helicase [Lactobacillus casei str. Zhang]
Length = 931
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 39/194 (20%)
Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV-F 59
F + D ET G DR QF + + + PD P A+
Sbjct: 10 FAVVDLETTGTSVKDGDRMIQFGC-----ALMQHGKIIQTISQLVN---PDRSVPVAIQR 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TG+ P + + E E ++ +HQ + T + +N + FD + F R +
Sbjct: 62 LTGLDPNRLVAAPYFE-EIAKTLHQLLTD--TVFVAHN-VNFDYPFLNAEFERVGLPKLQ 117
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D + P+ +SF+L DL IEH N H A +
Sbjct: 118 LA---------AIDTVELAQILLPEI----------SSFRLPDLTSYLQIEHDNPHQADS 158
Query: 180 DVYATLALVWLIRE 193
D +T L+R+
Sbjct: 159 DAIST---AKLLRQ 169
>gi|191638483|ref|YP_001987649.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
gi|190712785|emb|CAQ66791.1| ATP-dependent helicase DinG [Lactobacillus casei BL23]
gi|327382518|gb|AEA53994.1| ATP-dependent helicase [Lactobacillus casei LC2W]
gi|327385715|gb|AEA57189.1| ATP-dependent helicase [Lactobacillus casei BD-II]
Length = 928
Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 39/194 (20%)
Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV-F 59
F + D ET G DR QF + + + PD P A+
Sbjct: 7 FAVVDLETTGTSVKDGDRMIQFGC-----ALMQHGKIIQTISQLVN---PDRSVPVAIQR 58
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TG+ P + + E E ++ +HQ + T + +N + FD + F R +
Sbjct: 59 LTGLDPNRLVAAPYFE-EIAKTLHQLLTD--TVFVAHN-VNFDYPFLNAEFERVGLPKLQ 114
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D + P+ +SF+L DL IEH N H A +
Sbjct: 115 LA---------AIDTVELAQILLPEI----------SSFRLPDLTSYLQIEHDNPHQADS 155
Query: 180 DVYATLALVWLIRE 193
D +T L+R+
Sbjct: 156 DAIST---AKLLRQ 166
>gi|327191192|gb|EGE58235.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CNPAF512]
Length = 241
Score = 60.2 bits (145), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D +DR + G+ + + +T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINPGDQKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ L+D AE + I FF +N FD + F R
Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWIA---HNATFDMGFINAEFARIGLPPILPE---- 113
Query: 126 NSRWDLLDVMRAIYAFSPDGI 146
D L + R + P+ +
Sbjct: 114 -RVVDTLSMARRKHPMGPNSL 133
>gi|190889645|ref|YP_001976187.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
gi|190694924|gb|ACE89009.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CIAT 652]
Length = 241
Score = 60.2 bits (145), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D +DR + G+ + + +T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINPGDQKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ L+D AE + I FF +N FD + F R
Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWIA---HNATFDMGFINAEFARIGLPPILPE---- 113
Query: 126 NSRWDLLDVMRAIYAFSPDGI 146
D L + R + P+ +
Sbjct: 114 -RVVDTLSMARRKHPMGPNSL 133
>gi|167041229|gb|ABZ05986.1| putative exonuclease [uncultured marine microorganism
HF4000_001N02]
Length = 299
Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 58/194 (29%), Gaps = 30/194 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G D DR Q+A + D S +P A I GI+ +
Sbjct: 42 FDLETTGLDARKDRIVQYALIGSDVD----GSHINLASLVDPRRGIPT-AASRIHGISEE 96
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-NFYDSYRWSWDNG 125
G E I + I+G+N FD + R +
Sbjct: 97 DVRGVGSFETH-VGAISELIED--AVIVGHNISNFDWRFLELECMRAGVETPIPRA---- 149
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
++D G + L L I AH A AD A+L
Sbjct: 150 -----IVDTYSLARKLR---------IPGRRT--LGVLCARYDISIGRAHSADADAGASL 193
Query: 186 ALVWLIREKKPKLF 199
L+W + P F
Sbjct: 194 LLLWSMMHSHPAEF 207
>gi|154492230|ref|ZP_02031856.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
43184]
gi|154087455|gb|EDN86500.1| hypothetical protein PARMER_01864 [Parabacteroides merdae ATCC
43184]
Length = 256
Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 39/204 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G ++ DR + + V+V E + + PE+ I
Sbjct: 5 LKNPLVFFDLETTGINIVKDRIVEISFVKVYPN----GKEESKTRRINPEMPIPPESTAI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT + ++D E ++ + + GYN+ RFD F R D
Sbjct: 61 HGIT-DEDVKDCPTFKEIAKSLAAQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVD---- 113
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI------EHVNA 174
N D+ + K++ LA NA
Sbjct: 114 IDLNKRKFVDVQTIFH----------------------KMEQRTLAAAYKFYCDKSLENA 151
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A+AD AT ++ ++ P+L
Sbjct: 152 HTAEADTMATYEVLKAQLDRYPEL 175
>gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
gi|89518317|gb|EAS20973.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
Length = 1450
Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats.
Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 31/206 (15%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D R Q A D IE + KP +P
Sbjct: 2 YLIFDTETTGLPKRWDAPYTDVDNWPRVIQIAWQLHDEMGNLIEHKDYL-VKPDGFDIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ A + GV E + S ++G N++FD + F R
Sbjct: 61 -DAERIHGISTALADQQGVPLEEMLSEFNIALSKAK-FVVG-QNLKFDLNVTGAEFERTQ 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+ + V+ + Q P G FKL L +
Sbjct: 118 IANDLQE----------IPVLDTCTEHTAQLCQIPGGRGGK--FKLPTLTELHQFLFNQP 165
Query: 171 HVNAHDAKADVYATLAL-VWLIREKK 195
AH+A ADV AT + LIR+++
Sbjct: 166 FGEAHNATADVEATTRCFLELIRKQQ 191
>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
Length = 1435
Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats.
Identities = 46/231 (19%), Positives = 82/231 (35%), Gaps = 41/231 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+ +V++D ET G + + A V+V + E I+ F P ++
Sbjct: 418 DTYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFTSFA---NPH---HPLSITTIE 470
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT VE E R+ + + I+ +N FD + F +
Sbjct: 471 LTGITDDMLKDAPDVE-EVLRQFYDWMGDS---ILVAHNASFDIGFLNVGFTKLGL---- 522
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
G ++D + P+ + +L L IE H A
Sbjct: 523 -----GKVTNPVIDTLELARFLYPEL----------KNHRLNTLCKKFDIELTQHHRAIY 567
Query: 180 DVYAT-LALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
D AT L+ L+++ + + L+ + R+K ++ Q P HV+
Sbjct: 568 DAEATGYLLMRLLKDAQERGILYHDELNERSKEEVS----YQRSRPF-HVT 613
>gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
Length = 1460
Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats.
Identities = 54/213 (25%), Positives = 72/213 (33%), Gaps = 45/213 (21%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPKRWDAPISDTDNWPRCIQIAWQLHDELGNLIEH---------QDYLVQ 52
Query: 55 P-------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
P +A I GI+ + A G+ E + + S T I N+ FD
Sbjct: 53 PDGFNIPYDAEKIHGISTELAAEQGISLQEVLEKFNIALSK--TKFIVGQNVGFDVNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
FYR + L V+ + Q P G FKL L +
Sbjct: 111 AEFYRENVANKLQE----------LPVLDTCTEDTAQLCQIPGGRGGK--FKLPTLTELH 158
Query: 168 ----GIEHVNAHDAKADVYATLAL-VWLIREKK 195
G+ AH+A ADV AT + LIR K+
Sbjct: 159 QYLFGVGFGEAHNATADVEATTRCFLELIRRKE 191
>gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
bacterium D16]
gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
bacterium D16]
Length = 236
Score = 59.8 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 43/221 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAVFI 60
V++D ET G D D+ + A +RV+R + F P + LP+ V +
Sbjct: 14 LVVFDTETSGLDFDNDQIIELAALRVERTATGGLRIAGKMDTFIKLPEGETLPE-NIVSL 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT ++ +GV A+ + +I + T +I +N +FD + R +
Sbjct: 73 TGITDERLQTEGVQPAKAASQIAKLMQNGPTLMIAHNA-QFDACFLRGLL---------R 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-------VN 173
G W D + KL AN I N
Sbjct: 123 GQKVGRIDW-------------LDSLTVYKDRRAYPH-KL-----ANAIIAYDLTGKVQN 163
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEY--LYDYRNKNQLR 212
+H A DV A ++ + +++ L Y L+ Y K +
Sbjct: 164 SHRAIDDVLALFEVLKAMDDEREDLGSYVNLFGYNPKYGVS 204
>gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
spiritivorum ATCC 33861]
Length = 1474
Score = 59.8 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 38/206 (18%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADD--YL 52
++I+D ET G D P Q A D +E + A D +
Sbjct: 2 YIIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDDMGNMVEHADFL---IAPDGFNI 58
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
P ++ I GI+ + A G+ E R ++ + ++G NI FD FYR
Sbjct: 59 PY-DSEKIHGISTELAQERGIPIQEALVRFNEALAKAK-FVVG-QNIGFDLNIMGCEFYR 115
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----G 168
+ S + V+ + + ++ P G +KL +L + G
Sbjct: 116 YGVE----------SPMAGMPVLDTCTEVTAELLKLPGGRGGR--YKLPNLTELHTYLFG 163
Query: 169 IEHVNAHDAKADVYAT----LALVWL 190
+ AH+A ADV AT L LV L
Sbjct: 164 VPFAEAHNATADVEATTRCFLELVRL 189
>gi|302387397|ref|YP_003823219.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
WM1]
gi|302198025|gb|ADL05596.1| DNA polymerase III, epsilon subunit [Clostridium saccharolyticum
WM1]
Length = 222
Score = 59.8 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 77/243 (31%), Gaps = 55/243 (22%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPE 56
++V++D ET G A D + + ++V + + + +P
Sbjct: 15 AENYVVFDLETTGISPAEDSILEISAIKVKGHEPVAELNTLVNPGTH--------IPA-G 65
Query: 57 AVFITGITPQKA-LRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
A I GIT G+ E +F I ++G+N FD + YR
Sbjct: 66 ATRINGITDDMVKAAPGLKEVLPDFLSFIEGE------ILVGHNIQSFDLLF----LYRA 115
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + N D +D + P G +L D++ I
Sbjct: 116 AQELFGKEVPN-----DYVDTLFMAKTTLPQL--------GRH--RLTDISAYFHINTEG 160
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
AH A +D K +E + +K + I Q + L SG FG
Sbjct: 161 AHRALSDCVM-----------NQKCYEQMGKLVHKEEAE--ICPQCGSVLKRRSGKFGEF 207
Query: 234 RSN 236
Sbjct: 208 YGC 210
>gi|31747869|gb|AAN10194.1| DNA polymerase III epsilon subunit [Candidatus Fritschea bemisiae]
Length = 249
Score = 59.8 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/220 (20%), Positives = 77/220 (35%), Gaps = 35/220 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE-KIESTEVFFCKPADDYLPDPEAVFITGI 63
FV +D E+ G D DR + A ++ + I+S E + L E I I
Sbjct: 9 FVCFDCESTGLDPEKDRIIEIAAIK--FSFNAIIDSIEDL---INPETLIPQETTRIHHI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + ++ E + F + ++G+ I FD R S +
Sbjct: 64 T-DEMVQKSPKINEVIQSYLDFIGE--SIVVGHG-IPFDLALLEAEAKRAGVPSRLLNQ- 118
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D L + R + + L+ L I+ +NAH A +DV
Sbjct: 119 ---RYLDTLRLARLY--------------GESPTNSLESLRKHFNIQGINAHRAMSDVLV 161
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
+ + + + F + + K L K I ++ M PL
Sbjct: 162 NIDVFKYLSQG----FNTVEELFKK--LEKPIALRAM-PL 194
>gi|223937241|ref|ZP_03629147.1| DNA-directed DNA polymerase [bacterium Ellin514]
gi|223894026|gb|EEF60481.1| DNA-directed DNA polymerase [bacterium Ellin514]
Length = 199
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/209 (26%), Positives = 78/209 (37%), Gaps = 35/209 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +VI+D ET G D Q A VR+ + S++ FF
Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVRMSNG--VVCSSDSFFSYVNPGRSISSFITSY 58
Query: 61 TGITPQ---KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT Q A R G V +FSR ++ T I +N RFD + RN
Sbjct: 59 TGITNQDVGDAPRVGTVLKDFSR-----YAGKATLIA-HNGHRFDMKFLHAGCSRNALP- 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D + + R ++ P G G S L L ++N V HDA
Sbjct: 112 -----TRAVNYHDSIYLSRLVWGKCPGG-------HGLDSV-LNRLQISNH--GVRRHDA 156
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYR 206
+ DV L+ E K++ +L R
Sbjct: 157 RGDVE-------LLAEAVEKMW-HLLRER 177
>gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489]
gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489]
Length = 1479
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/206 (24%), Positives = 75/206 (36%), Gaps = 31/206 (15%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D I + + KP +P
Sbjct: 2 YLIFDTETTGLPKRWDAPYTDTDNWPRCIQIAWQLHDDMGNVI-EHQDYLVKPDGFNIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ A +DGV AE + + T + N+ FD F+R
Sbjct: 61 -DAEKIHGISTALAEQDGVPLAEVLEKFNTALEK--TKFVVGQNVGFDLNIMGAEFHRLQ 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
++ L V+ + Q P G FKL L + G
Sbjct: 118 VENQLQE----------LPVLDTCTEHTASLCQIPGGRGGK--FKLPTLTELHQFLFGEP 165
Query: 171 HVNAHDAKADVYATLAL-VWLIREKK 195
AH+A ADV AT + LIR+++
Sbjct: 166 FGEAHNATADVEATTRCFLELIRKQQ 191
>gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
Length = 1512
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 87/236 (36%), Gaps = 57/236 (24%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPRSWSAPITDTDNWPRCIQIAWQLHDEMGNLIEH---------QDYLVK 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
PE A I GI+ + AL G++ +E + + S T I N+ FD
Sbjct: 53 PEGFNIPYDAERIHGISTELALEQGILLSEVLEKFNIALSK--TKFIVGQNVGFDVNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F+R ++ + S+ +LD + A + ++ P G FKL L +
Sbjct: 111 CEFHR-------LNFGSDLSKMPVLDTCTEVTA---NLLKLPGGRGGR--FKLPTLTELH 158
Query: 168 ----GIEHVNAHDAKADVYAT----LALVWL-IREKK-----PKLFEYLYDYRNKN 209
AH+A ADV AT L L+ I K+ P EY +R KN
Sbjct: 159 QYLFNQPFAEAHNATADVEATTRCFLELIKREIFTKEELDVTP---EYFRSFREKN 211
>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens NCTC 8239]
gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens NCTC 8239]
Length = 870
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 36/198 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFI 60
+ +++D E+ G DV D Q A ++++++ E ++ E F KP D + ++
Sbjct: 502 ENIIVFDVESTGVDVIEDEIIQIAAIKLNKKGEVVDKFEKFLKNKKPVKD------SYYV 555
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYR-NFYDS 117
G + + + G + ++ + F + I+G+N +++D + R N
Sbjct: 556 HGFSDEMLQKIGEDK----EKVLKEFVEYSKGSIIVGHN-VQYDINILCSELERSNLGKP 610
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ +D LD+ R Y G ++KL++L+ +H +HDA
Sbjct: 611 KFKTF------YDTLDIYRRFY-------------PGNINYKLENLSNVYDTKHKPSHDA 651
Query: 178 KADVYATLALV-WLIREK 194
D+ AT L+ I EK
Sbjct: 652 MDDIIATGELLVRAINEK 669
>gi|115379647|ref|ZP_01466730.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
gi|310819920|ref|YP_003952278.1| exonuclease [Stigmatella aurantiaca DW4/3-1]
gi|115363357|gb|EAU62509.1| DNA polymerase III epsilon subunit [Stigmatella aurantiaca DW4/3-1]
gi|309392992|gb|ADO70451.1| Exonuclease [Stigmatella aurantiaca DW4/3-1]
Length = 219
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 58/193 (30%), Gaps = 23/193 (11%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITG 62
D ET G D + + A +RVD + + E +P PEA+ + G
Sbjct: 30 TLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEAR-VQPTRLADAHPEALAVCG 88
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + RD + E + + T + G+N F F
Sbjct: 89 YS-DEEWRDALSLEEVLATVTPLLA--GTLVAGHNT----------SFDWGFLVEGYRRT 135
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
D + + WP G S L LA GI H A AD
Sbjct: 136 ALTLPSVD-------YHRLDTASLAWPLLATGEVESLSLNALARHFGIHRPTPHRAMADA 188
Query: 182 YATLALVWLIREK 194
L + + +
Sbjct: 189 RCALEVARRLAVR 201
>gi|323489712|ref|ZP_08094939.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
gi|323396843|gb|EGA89662.1| ATP-dependent helicase dinG [Planococcus donghaensis MPA1U2]
Length = 920
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 34/187 (18%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
T +V+ D ET G A DR Q A V ++ +I T F P +P +FI
Sbjct: 3 TQKYVVVDIETTGHSPAKGDRIIQLAMVTIENG--EITDTYTEFINPGR-TIP----LFI 55
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T IT E +++ +++ + +N FD + + R+
Sbjct: 56 QDLTNITDADVAEAKAFE-HYAQTVYEKMQD--AIFVAHN-TNFDLPFLQAELKRSGLP- 110
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
W +D + + P SFKLQD+ GI +AH A
Sbjct: 111 ---KWQGLT-----MDTVELVRLMYPTAF----------SFKLQDITSELGIPLESAHRA 152
Query: 178 KADVYAT 184
D AT
Sbjct: 153 DDDAMAT 159
>gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
Length = 1510
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 44/201 (21%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D + IE DYL
Sbjct: 2 YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDEMGQLIEH---------QDYLVK 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
PE A I GI+ + A DG+ AE + + S T I N+ FD
Sbjct: 53 PEGFNIPYDAERIHGISTELAEADGITLAEVLEKFNIALSK--TKFIVGQNLGFDVNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F+R +S S + V+ + +Q P G FKL L +
Sbjct: 111 AEFHRMGVESQMAS----------MPVLDTCTEVTASLLQLPGGRGGK--FKLPTLTELH 158
Query: 168 GIEHVN----AHDAKADVYAT 184
AH+A ADV AT
Sbjct: 159 SYLFDQPFAEAHNATADVEAT 179
>gi|4336678|gb|AAD17890.1| exonuclease I [Bradyrhizobium japonicum]
Length = 61
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R+ ++ Y +Y S ++ N R D L ++ A A SP + P ++G +F+LQ LA
Sbjct: 1 MLRHALFQCLYPAYLTS-NHRNCRADALSLVMAADAVSPAQLVVPVSEEGRRTFRLQQLA 59
Query: 165 L 165
Sbjct: 60 A 60
>gi|108760097|ref|YP_630122.1| exonuclease [Myxococcus xanthus DK 1622]
gi|108463977|gb|ABF89162.1| exonuclease [Myxococcus xanthus DK 1622]
Length = 219
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 59/193 (30%), Gaps = 23/193 (11%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITG 62
D ET G D + + A +RVD + + E KP PEA+ + G
Sbjct: 30 TLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEAR-VKPTRLADAHPEALAVCG 88
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + RD + E + + T + G+N F F
Sbjct: 89 YS-DEEWRDALPLQEVLATVTPLLA--GTLVAGHNT----------SFDWGFLVESYRRS 135
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
+ D + + WP G S L LA G+ H A AD
Sbjct: 136 ELALPSVD-------YHRLDTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRAMADA 188
Query: 182 YATLALVWLIREK 194
L + + +
Sbjct: 189 RCALEVARCLAVR 201
>gi|41152197|ref|NP_957038.1| oligoribonuclease, mitochondrial [Danio rerio]
gi|37590357|gb|AAH59540.1| Small fragment nuclease [Danio rerio]
Length = 199
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD--DYLPD-------- 54
V D E G D+ D+ + A + D I + +P D D + D
Sbjct: 10 VWVDLEMTGLDIEKDQIIEMACIVTDSDLNVIAEGPNLIINQPDDLLDGMSDWCKEHHGK 69
Query: 55 ---PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF I Q + P C + N++ D +
Sbjct: 70 SGLTQAVRDSHITLQQA------EYEFLSFIRQH-TPPGVCPLAGNSVHADKKFL 117
>gi|227510342|ref|ZP_03940391.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227189994|gb|EEI70061.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 945
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV 58
+ + D ET G D+++D R QF+ V + +E+ D P PE +
Sbjct: 5 TTYAVVDIETTGTDMSVDNRIIQFSCTLVAHG-KIVETYVS-------DINPQREVPERI 56
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGITP++ L+ + S ++++ S T + +N + FD + F R Y
Sbjct: 57 IQLTGITPER-LKKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYPE 112
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P +S++LQDL+ I H + H A
Sbjct: 113 LDIE---------AIDTVTLSQILLPTL----------SSYRLQDLSAYFNIIHNHPHTA 153
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
+D AT L+ ++ + L + L ++I I PL
Sbjct: 154 DSDALATAKLLLILLRQVKML--------PRRTLEQIIQINPSLPL 191
>gi|323467153|gb|ADX70840.1| DNA polymerase III [Lactobacillus helveticus H10]
Length = 317
Score = 59.4 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 29/187 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+++ + D ET G DR + GV+V R + ++ P ++ +P A
Sbjct: 31 SNYTMLDIETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ +G+ + + F +T IIGYN + FD + + +
Sbjct: 87 NGITEEQLTNEGIPAEQAIKEFR-EFIGDDT-IIGYN-VNFDLNFL-YDLSQKYNLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + + Y +L D GI V H AD
Sbjct: 142 ----NNDYVDVLRLAKVYY--------------PRQHNRLIDCMQRAGIAQVEQHHGLAD 183
Query: 181 VYATLAL 187
T+ +
Sbjct: 184 SLDTIKV 190
>gi|149195052|ref|ZP_01872144.1| Exonuclease [Caminibacter mediatlanticus TB-2]
gi|149134765|gb|EDM23249.1| Exonuclease [Caminibacter mediatlanticus TB-2]
Length = 293
Score = 59.0 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 41/231 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGITPQK 67
D ET G + DR Q + + ++ +IE KP +P EA+ + IT +
Sbjct: 7 DTETTG-NKQEDRICQLSYLVLNEDL-EIEEIHNELVKPP---IPISYEAMAVHHITNEM 61
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
++ S + + + P I+ +N FD R + ++ +
Sbjct: 62 VEDKPQIKFTNSYKRLKELNSPENIIV-IHNSEFDLEMLR----KEGFNPF--------- 107
Query: 128 RWDLLDVMRAIYAFSPDG---IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+ L+D R + PDG +Q+ G K +D+ I +NAHDA DV
Sbjct: 108 -FKLIDTFRVLKHILPDGKFGLQYNRYALGLYK-KEKDICKKYNIT-INAHDALGDVVVL 164
Query: 185 LALVWLIRE-------------KKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
L I + +KP L++ Y K + K++D+ P
Sbjct: 165 YLLFEYILKNHNLTYEELIELTQKPILYDKFYQ--GKYKFEKIVDVIVKDP 213
>gi|212638970|ref|YP_002315490.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Anoxybacillus flavithermus WK1]
gi|212560450|gb|ACJ33505.1| DNA polymerase III, epsilon subunit and Rad3-related DNA helicase
[Anoxybacillus flavithermus WK1]
Length = 880
Score = 59.0 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 30/186 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M + FV+ D ET G DR Q V ++ K++ F +P D +P +F
Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGD--KVKKRFSTFVQPERD-IP----LF 53
Query: 60 ITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I +T A+ + + + +N ++FD + + F R+
Sbjct: 54 IQQLTGIDHAMVHDAPPFQHIAAMLVE-QWEGAYFVAHN-VQFDWAFLQEEFIRSGIQPP 111
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
LLD + P +S+KL LA A H H A
Sbjct: 112 TCR---------LLDTVELARFLMPT----------QSSYKLNHLAEALSFAHDRPHQAD 152
Query: 179 ADVYAT 184
D AT
Sbjct: 153 YDAEAT 158
>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
Length = 1479
Score = 59.0 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 75/213 (35%), Gaps = 45/213 (21%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPKRWDVPFTDTDNWPRCIQIAWQLHDDMGNLIEH---------QDYLVQ 52
Query: 55 P-------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
P +A I GI+ A + GV A + ++ + T + N+ FD
Sbjct: 53 PDGFNIPYDAEQIHGISTALAEQKGVPLAVVLEKFNEAMAK--TKFVVGQNVGFDLNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F+R ++ L V+ + Q P G FKL L +
Sbjct: 111 AEFHRMGVENPLQE----------LPVLDTCTEHTATLCQIPGGRGGK--FKLPTLTELH 158
Query: 168 ----GIEHVNAHDAKADVYATLAL-VWLIREKK 195
G+ AH+A ADV AT + L+R+++
Sbjct: 159 HYLFGVGFGEAHNATADVEATTRCFLELVRKQQ 191
>gi|319651314|ref|ZP_08005444.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
gi|317397094|gb|EFV77802.1| DnaQ family exonuclease/DinG family helicase [Bacillus sp.
2_A_57_CT2]
Length = 933
Score = 59.0 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 28/187 (14%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M N +V+ D ET G D+ QFA V ++ KI P P E +
Sbjct: 1 MGNKYVVVDLETTGNAPKKGDKIIQFAAVVIENG--KITEEYSSLVNPEQSIPPFIEEL- 57
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TG++ + + + + +E + ++ + +N + FD + + Y+ +
Sbjct: 58 -TGLS-DEMVENAPLFSEIAPKVLTLL--EGAYFVAHNVL-FDLSFLQEELIEAGYNGF- 111
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+LD + P SFKL DLAL G+ H H A +
Sbjct: 112 --------YGPVLDTVEMARILFPTA----------DSFKLSDLALREGLNHERPHQADS 153
Query: 180 DVYATLA 186
D Y T
Sbjct: 154 DAYVTAE 160
>gi|209551510|ref|YP_002283427.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537266|gb|ACI57201.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 245
Score = 59.0 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/177 (22%), Positives = 59/177 (33%), Gaps = 27/177 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + G+ + + + + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNVIHIYINPGDQKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ L+D AE + I FF +N FD + R
Sbjct: 61 DEFLKDKKPFAEVAEEILTFFGDAKWIA---HNATFDMGFINAELARIGLPPILPE---- 113
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKAD 180
D L + R + P+ L L GI H H A D
Sbjct: 114 -RVLDTLSMARRKHPMGPNS--------------LDALCRRYGIDNSHRTKHGALLD 155
>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 1437
Score = 59.0 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 34/195 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV +D ET G DR + + V+ Q IE + + P + F T +
Sbjct: 419 FVAFDLETTGLSAVTDRIIELSAVK--MQLGNVIEKFSEY---INPGF---PLSEFTTKL 470
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + + E +R ++ N ++G+N + FD + N Y + +
Sbjct: 471 TSITDAMVANSDTEENIIKRFREWSG--NAVLVGHN-VTFDVGFM-NAAYTRYNQPIITN 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D + PD S++L +A I AH A D
Sbjct: 527 A--------IIDTLPFTRWLYPD----------YKSYRLGTIAKRFNINLEQAHRAIFDA 568
Query: 182 YATLALV-WLIREKK 195
T + LI+E
Sbjct: 569 ETTGHIAWRLIKEAH 583
>gi|104774002|ref|YP_618982.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423083|emb|CAI97804.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|325125707|gb|ADY85037.1| ATP-dependent DNA helicase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 930
Score = 59.0 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 41/197 (20%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
F + D ET G DR QF + D + + P P
Sbjct: 8 ESFAVVDLETTGTRKEEGDRIIQFGCAIVKD------GEVVKTYSFMMN---PHRKIP-- 56
Query: 58 VFITGIT-PQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ +T +T + + G + ++ +I + T + +N + FD + +
Sbjct: 57 LSVTNLTGIDQKMVAGQADFKHYAPKIREILQD--TVFVAHN-VNFDFPFLNYELTNAGF 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ D +++ + + P+ S+KL+DL + I+H N H
Sbjct: 114 EALT------CKAVDTVELAKIAF---------PT----LPSYKLRDLTASLEIKHANPH 154
Query: 176 DAKADVYAT-LALVWLI 191
A +D Y T + L+ +I
Sbjct: 155 KADSDAYGTAVLLLKII 171
>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum
Rt17-B1]
Length = 1390
Score = 59.0 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 47/232 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V+ D ET G + D + V+ R + I+ F +P + +++ ITGI
Sbjct: 382 TYVVLDLETTGLNPRSDEIMEIGAVKT-RDGKVIDEFHTF-VRPNK---LNKKSLNITGI 436
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN---FYDSYRW 120
T + L+D + ++ +F I+ +N FD + +NI ++ F Y
Sbjct: 437 T-EDMLKDAPDIMQVLPKLLEFIKDS---ILVAHNADFDMTFLKNILSKSGIEFNPPY-- 490
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D +R A + I+ SF L L G+ H A D
Sbjct: 491 -----------IDTLRLSQALLRNKIK---------SFSLDKLVDHFGLGAFQHHRALDD 530
Query: 181 VYATLALV-WLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV----HVS 227
T+ + LI K K +L KL ++N+ PLV HV+
Sbjct: 531 ARVTVNVFWKLIELAKKKSITTF------EKLNKL--VENINPLVKHPQHVT 574
>gi|15604982|ref|NP_219766.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/UW-3/CX]
gi|76788983|ref|YP_328069.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
gi|166154472|ref|YP_001654590.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
gi|166155347|ref|YP_001653602.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802684|ref|YP_002887878.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/Jali20/OT]
gi|237804606|ref|YP_002888760.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311062|ref|ZP_05353632.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
gi|255317363|ref|ZP_05358609.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
gi|255348621|ref|ZP_05380628.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
gi|255503161|ref|ZP_05381551.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
gi|255506839|ref|ZP_05382478.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
gi|301335732|ref|ZP_07223976.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
gi|3328673|gb|AAC67854.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
gi|76167513|gb|AAX50521.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
gi|165930460|emb|CAP03953.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
gi|165931335|emb|CAP06907.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231272906|emb|CAX09817.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273918|emb|CAX10710.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/Jali20/OT]
gi|289525300|emb|CBJ14776.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
gi|296434850|gb|ADH17028.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|296435777|gb|ADH17951.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|296436702|gb|ADH18872.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|296437637|gb|ADH19798.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|296438570|gb|ADH20723.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|297140136|gb|ADH96894.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
gi|297748391|gb|ADI50937.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-EC]
gi|297749271|gb|ADI51949.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis D-LC]
Length = 232
Score = 59.0 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 57/186 (30%), Gaps = 38/186 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ YD ET G + DR + A ++ + + E +P P EA
Sbjct: 2 PALIFYDTETTGTQIDKDRIVELAAYNGTTSESFQTLVNPE----------IPIPAEATK 51
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY-DSY 118
I GIT + + + I F + ++ +NN FD R+ +
Sbjct: 52 IHGITTAEVADAPRFPEAYQKFI--EFCGTDNILVAHNNNAFDYPLLVRECRRHGLSEPQ 109
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR-DDGATSFKLQDLALANGIEHVNAHDA 177
+ D ++W + LQ L G E AH A
Sbjct: 110 LRTI---------------------DSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHRA 148
Query: 178 KADVYA 183
DV
Sbjct: 149 LDDVIT 154
>gi|227544617|ref|ZP_03974666.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
reuteri CF48-3A]
gi|300910253|ref|ZP_07127713.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
reuteri SD2112]
gi|227185400|gb|EEI65471.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
reuteri CF48-3A]
gi|300892901|gb|EFK86261.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
reuteri SD2112]
Length = 954
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 31/190 (16%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G +V DR Q V V + E + E P + P ++ +TGI +
Sbjct: 23 DLETTGTNVNHGDRIIQIGCVLV-QDGEIMNHFETKI-NPREKI---PRSIVQLTGIEDK 77
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + E + + I+ + T + +N + FD + R Y S
Sbjct: 78 DVRKAPLFE-DIAGTIYSLLAE--TTFVAHN-VNFDFPFLNAELERAGYPSL-------- 125
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+D + P SF+L+DL + IEH + H A +D AT
Sbjct: 126 -SIPAIDTVTLSQILLPTA----------KSFRLRDLTSSLHIEHDHPHSAVSDAEATAD 174
Query: 187 LV-WLIREKK 195
L+ L++ +
Sbjct: 175 LLNDLLKRVQ 184
>gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
Length = 1493
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D ++ + + KP +P
Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHD-DMGRLIEHQDYLVKPDGFNIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A + GI+ + AL G+ E + + I+G NI FD F+R
Sbjct: 61 -DAERVHGISTELALEQGIDLVEVLEKFNIALDKAK-FIVG-QNIGFDINIMGCEFHRMG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+ + D + A + +Q P G FKL +L + G+
Sbjct: 118 I----ATTMGEKAVLDTCTEVTA------NLLQLPGGRGGK--FKLPNLTELHAYLFGVP 165
Query: 171 HVNAHDAKADVYATLAL-VWLIRE 193
AH+A ADV AT + LI++
Sbjct: 166 FAEAHNATADVEATTRCFLELIKK 189
>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata
HTCC2501]
Length = 1453
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/207 (23%), Positives = 72/207 (34%), Gaps = 33/207 (15%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D PA Q A D + +E + +P +P
Sbjct: 2 YLIFDTETTGLPKRWDAPASDTDNWPRCIQIAWQLHDGEGRLVEQYDAL-VRPDGFNIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ A +G+ E S T + N+ FD FYR
Sbjct: 61 -DAEQIHGISTDLAREEGLPLEEVLEAFRGALSR--TQFLVGQNVGFDINVMGAEFYRVA 117
Query: 115 -YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GI 169
D V+ + + Q P G FKL L + G
Sbjct: 118 DEDPLEK-----------FPVLDTCTESTAELCQLPGGRGGK--FKLPTLTELHLHLFGE 164
Query: 170 EHVNAHDAKADVYATLAL-VWLIREKK 195
AH+A ADV AT + L+R ++
Sbjct: 165 PFEEAHNATADVEATARCFLELLRRRQ 191
>gi|199598401|ref|ZP_03211820.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
gi|258508490|ref|YP_003171241.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus GG]
gi|199590720|gb|EDY98807.1| Rad3-related DNA helicase [Lactobacillus rhamnosus HN001]
gi|257148417|emb|CAR87390.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
rhamnosus GG]
gi|259649800|dbj|BAI41962.1| DNA helicase [Lactobacillus rhamnosus GG]
Length = 933
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 30/194 (15%)
Query: 3 NHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FI 60
F + D ET G DR QF V + I + D P+ + +
Sbjct: 5 TTFAVVDLETTGTSVKDGDRMIQFGCALVRHG-KII---QTISQMINPDR-SVPQTIQRL 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+P++ + + E + +HQ + T + +N + FD + F R +
Sbjct: 60 TGISPERLVAAPYFD-EVAPALHQVLTK--TVFVAHN-VNFDYPFLNAEFERIGLPKLQL 115
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + P+ +SF+L DL I+H N H A +D
Sbjct: 116 E---------AIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQADSD 156
Query: 181 VYATLALVWLIREK 194
+T L+ ++ +
Sbjct: 157 ATSTAKLLLQLKAR 170
>gi|15639630|ref|NP_219080.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025868|ref|YP_001933640.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|6014996|sp|O83649|DPO3E_TREPA RecName: Full=DNA polymerase III subunit epsilon
gi|3322942|gb|AAC65617.1| DNA polymerase III, subunit epsilon (dnaQ) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018443|gb|ACD71061.1| DNA polymerase III, subunit epsilon [Treponema pallidum subsp.
pallidum SS14]
gi|291060013|gb|ADD72748.1| DNA polymerase III subunit epsilon [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 215
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 69/215 (32%), Gaps = 31/215 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F +D ET G DR + V DR+ I D P+ I IT
Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFDRK-GIIARFSTL---IFPDRAIPPDVSKINHIT 70
Query: 65 PQKA-LRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ E ++FSR I T ++ +N FD +
Sbjct: 71 DDMLVNKPRFCEIVSDFSRFI------KGTVLVAHNA-NFDVEFLNAELSLCKKQPLSHK 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D A P G ++LQ+LAL G+ AH A+ D
Sbjct: 124 ---------VVDTYAMAQAVFPGL--------GRHQYRLQNLALQFGLTVHAAHRAEDDA 166
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
+ L + K + ++ ++KLI
Sbjct: 167 RVCMELFTTMIAHHAKQNGHCVNHAQSPTIKKLIQ 201
>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum C str. Eklund]
gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum C str. Eklund]
Length = 1441
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 40/199 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
+ FV++D ET G D+ +F V++ + I+S F + +P IT
Sbjct: 426 DTFVVFDLETTGFSSQYDKIIEFGAVKI-KNGNIIDSFSAF---VNPEMKIPY----RIT 477
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD-SY 118
+T + V +AE ++ F +T ++ +N+ FD + R +N D +
Sbjct: 478 ELT--SITNEDVKDAETIDKVLPKFMKFAEDTVLVAHNS-NFDMSFIR----KNCNDLNI 530
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++ ++D + P+ +KL +A G+ N H A
Sbjct: 531 ECNYT-------VMDTIPLAKFLFPEL----------KRYKLNTIAKHLGVSLENHHRAV 573
Query: 179 ADVYAT----LALVWLIRE 193
D AT + L++E
Sbjct: 574 DDAKATGDILVHCFKLLKE 592
>gi|257439307|ref|ZP_05615062.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
A2-165]
gi|257198182|gb|EEU96466.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
A2-165]
Length = 244
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAVFIT 61
V +D ET G + + + A +RV++ +S +VF P + +P + V +T
Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT ++ +G+ EAE + R + S ++ +N +FD ++ + R
Sbjct: 74 GITDEQLENEGITEAEAAARFTELISG-GRVLLVAHNAQFDLLFTAEMLRR--------- 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALANGIEHVNAHDAKA 179
+GN + L A D + KL + L + N+H A
Sbjct: 124 --HGNGGPEALKA-----ADYLDSLTVYKDRRAYPH-KLANAILTYKLEGKVQNSHRAID 175
Query: 180 DVYATLALVWLIREKKPKLFEYL 202
DV A + + ++ L Y+
Sbjct: 176 DVAALFEVCKAMDAERSDLLNYV 198
>gi|260102980|ref|ZP_05753217.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
gi|260083211|gb|EEW67331.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
gi|328464560|gb|EGF35931.1| DNA polymerase III [Lactobacillus helveticus MTCC 5463]
Length = 317
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 29/187 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+++ + D ET G DR + GV+V R + ++ P ++ +P A
Sbjct: 31 SNYTMLDVETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ +G+ + + F +T IIGYN + FD + + +
Sbjct: 87 NGITEEQLTNEGIPAEQAIKEFR-EFIGDDT-IIGYN-VNFDLNFL-YDLSQKYNLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + R Y +L D GI V H AD
Sbjct: 142 ----NNDYVDVLRLARVYY--------------PRQHNRLIDCMQRAGIAQVEQHHGLAD 183
Query: 181 VYATLAL 187
T+ +
Sbjct: 184 SLDTIKV 190
>gi|256847331|ref|ZP_05552777.1| helicase [Lactobacillus coleohominis 101-4-CHN]
gi|256715995|gb|EEU30970.1| helicase [Lactobacillus coleohominis 101-4-CHN]
Length = 950
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 30/183 (16%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G V DR Q V + + + I E + + P +V +TGIT +
Sbjct: 20 DLETTGTSVKSGDRIIQVGLVMI-QDGKIINQFET---RINP-LMKIPRSVQQLTGITDK 74
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ ++E + + + S T + +N + FD + + R D R S
Sbjct: 75 DVSKAPLLE-DIAPTLESLLS--GTIFVAHN-VNFDFPFINHELTRVGRDPLRIS----- 125
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+D + P S++L+DL IEH + H A +D AT
Sbjct: 126 ----AIDTVTLSQILMPTA----------KSYRLRDLTSYLHIEHDHPHSAVSDAEATGV 171
Query: 187 LVW 189
L+
Sbjct: 172 LLK 174
>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens E str. JGS1987]
gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens E str. JGS1987]
Length = 876
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 87/200 (43%), Gaps = 40/200 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
+ +++D E+ G DV D Q A +++++ E ++ E F L + ++V
Sbjct: 508 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKNGEVVDKFEKF--------LKNKKSVKDSY 559
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYR-NFY 115
++ G + + R G + ++ + F ++ I+G+N +++D + R N
Sbjct: 560 YVHGFSDEMLQRIGEDK----EKVLKEFVEYSKDSIIVGHN-VQYDINILCSELERSNLG 614
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ +D LD+ R Y G ++KL++L+ +H +H
Sbjct: 615 KPKFKTF------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSH 655
Query: 176 DAKADVYATLALV-WLIREK 194
DA D+ AT L+ I EK
Sbjct: 656 DAMDDIIATGELLVRAINEK 675
>gi|229552292|ref|ZP_04441017.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
rhamnosus LMS2-1]
gi|258539701|ref|YP_003174200.1| DNA polymerase III Rad3-related DNA helicase [Lactobacillus
rhamnosus Lc 705]
gi|229314364|gb|EEN80337.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
rhamnosus LMS2-1]
gi|257151377|emb|CAR90349.1| DNA polymerase III, Rad3-related DNA helicase [Lactobacillus
rhamnosus Lc 705]
Length = 933
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 30/194 (15%)
Query: 3 NHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FI 60
F + D ET G DR QF V + I + D P+ + +
Sbjct: 5 TTFAVVDLETTGTSVKDGDRMIQFGCALVRHG-KII---QTISQMINPDR-SVPQTIQRL 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+P++ + + E + +HQ + T + +N + FD + F R +
Sbjct: 60 TGISPERLVAAPYFD-EVAPALHQVLTK--TVFVAHN-VNFDYPFLNAEFERIGLPKLQL 115
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + P+ +SF+L DL I+H N H A +D
Sbjct: 116 E---------AIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQADSD 156
Query: 181 VYATLALVWLIREK 194
+T L+ ++ +
Sbjct: 157 ATSTAKLLLQLKAR 170
>gi|295398569|ref|ZP_06808601.1| possible DNA-directed DNA polymerase III epsilon subunit
[Aerococcus viridans ATCC 11563]
gi|294973170|gb|EFG48965.1| possible DNA-directed DNA polymerase III epsilon subunit
[Aerococcus viridans ATCC 11563]
Length = 957
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 99/269 (36%), Gaps = 64/269 (23%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---P- 55
+T + + D ET G DR Q GV + + ++ A D P+ P
Sbjct: 4 VTTTYAVLDLETTGSTYDNGDRIIQI-GVAFVQNGQVVDQF-------ATDIFPNQEIPR 55
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
E +TGIT ++ + E I + + NT I+ +N I FD + F + Y
Sbjct: 56 EITKLTGITNEQV--KRAPKFEAVAEIL-WQKLSNTVIVAHN-IGFDYKFLDKSFQAHGY 111
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ D +D + + P S+KL + LA+GI+ NAH
Sbjct: 112 PAMTH---------DRVDTVEMVRTLFPTA----------DSYKLGEFCLAHGIQLENAH 152
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV----SGMF- 230
A D AT ++ + +EK + L+ + P +H +G +
Sbjct: 153 TAIDDAVATAHILIMCQEKVATMPVELFA--------------QLQPFLHYFIGQTGDYM 198
Query: 231 --------GASRSNTALIAPVAWHPRYKD 251
GA R IAP +P+ +
Sbjct: 199 ALWFKDHKGAKRPCEY-IAPFVLNPKSAN 226
>gi|58337906|ref|YP_194491.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
gi|227902927|ref|ZP_04020732.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
gi|58255223|gb|AAV43460.1| DNA polymerase III [Lactobacillus acidophilus NCFM]
gi|227869343|gb|EEJ76764.1| DNA polymerase III [Lactobacillus acidophilus ATCC 4796]
Length = 318
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+++ + D ET G DR + V+V R + ++ P ++ +P A
Sbjct: 31 SNYTMLDIETTGLSPYRDRITELGAVKV-RNGQIVDQYTNLVKFPKNNKVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ + +G+ + +F I GYN I FD + + F
Sbjct: 87 NGITEEQIINEGIPAEQAITEFREFIGD--DVIAGYN-INFDLNFL-YDLSQKFKLPIL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + RA Y P +L D GI V H AD
Sbjct: 142 ----NNDYVDVLRLARAYY---------PRERHN----RLIDCMQRAGIAKVEQHHGLAD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|293380779|ref|ZP_06626825.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Lactobacillus crispatus 214-1]
gi|290922665|gb|EFD99621.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Lactobacillus crispatus 214-1]
Length = 318
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
++ + D ET G DR + GV+V R + ++ ++ +P A
Sbjct: 31 TNYTMLDIETTGLYPYRDRIIELGGVKV-RNGQIVDQYTNLVKFSKNNSVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ +++G+ + R +F IIGYN + FD + + +
Sbjct: 87 NGITEEQIVKEGIPAEQAIREFREFIGD--DVIIGYN-VNFDLNFL-YDLSQKYGLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + R Y P L + A GI V AH D
Sbjct: 142 ----DNDYVDVLRLARTYY---------PRERHNR---LLDCMQRA-GIAQVEAHHGLQD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|227513350|ref|ZP_03943399.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
gi|227083223|gb|EEI18535.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
buchneri ATCC 11577]
Length = 945
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV 58
+ + D ET G D+++D R QF+ V + +E+ D P PE +
Sbjct: 5 TTYAVVDIETTGTDMSVDNRIIQFSCTLVAHG-KIVETYVS-------DINPQREVPERI 56
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGITP++ L+ + S ++++ S T + +N + FD + F R Y
Sbjct: 57 IQLTGITPER-LKKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYPE 112
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P +S++LQDL+ I H + H A
Sbjct: 113 LDIE---------AIDTVTLSQILLPTL----------SSYRLQDLSTYFNIIHNHPHTA 153
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
+D AT L+ ++ + L + L ++I I PL
Sbjct: 154 DSDALATAKLLLILLRQVKML--------PRRTLEQIIQINPSLPL 191
>gi|227524493|ref|ZP_03954542.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
gi|227088363|gb|EEI23675.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
hilgardii ATCC 8290]
Length = 945
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV 58
+ + D ET G D+++D R QF+ V + +E+ D P PE +
Sbjct: 5 TTYAVVDIETTGTDMSVDNRIIQFSCTLVAHG-KIVETYVS-------DINPQREVPERI 56
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGITP++ L+ + S ++++ S T + +N + FD + F R Y
Sbjct: 57 IQLTGITPER-LKKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYPE 112
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P +S++LQDL+ I H + H A
Sbjct: 113 LDIE---------AIDTVTLSQILLPTL----------SSYRLQDLSTYFNIIHNHPHTA 153
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
+D AT L+ ++ + L + L ++I I PL
Sbjct: 154 DSDALATAKLLLILLRQVKML--------PRRTLEQIIQINPSLPL 191
>gi|313123658|ref|YP_004033917.1| ATP-dependent DNA helicase ding [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280221|gb|ADQ60940.1| ATP-dependent DNA helicase DinG [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 929
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 41/197 (20%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
F + D ET G DR QF + D + + P P A
Sbjct: 7 ESFAVVDLETTGTRKEEGDRIIQFGCAIVKD------GEVVKTYSFMMN---PHRKIPLA 57
Query: 58 VFITGIT-PQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+T +T + + G + ++ +I + + +N + FD + +
Sbjct: 58 --VTNLTGIDQKMVAGQADFKHYAPKIREILQDK--VFVAHN-VNFDFPFLNYELTNAGF 112
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ D +++ + + P+ S+KL+DL + I+H N H
Sbjct: 113 EALT------CKAVDTVELAKIAF---------PT----LPSYKLRDLTASLEIKHANPH 153
Query: 176 DAKADVYAT-LALVWLI 191
A +D Y T + L+ +I
Sbjct: 154 KADSDAYGTAVLLLKII 170
>gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium
psychrophilum JIP02/86]
gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits
[Flavobacterium psychrophilum JIP02/86]
Length = 1508
Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 69/203 (33%), Gaps = 48/203 (23%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPRSWSAPITDTNNWPRCIQIAWQLHDEMGNLIEH---------QDYLIK 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
PE A I GI+ + A+ GV E + + S T I N+ FD
Sbjct: 53 PEGFNIPYDAERIHGISTELAIEQGVSLQEVLEQFNIALSK--TKFIVGQNVGFDVNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
FYR N D+ + V+ + ++ P G FKL L
Sbjct: 111 CEFYR------------ANISSDMVKMPVLDTCTEVTASLLKLPGGRGGR--FKLPTLTE 156
Query: 166 AN----GIEHVNAHDAKADVYAT 184
+ I AH+A ADV AT
Sbjct: 157 LHQYLFQIPFSEAHNATADVEAT 179
>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
genitalium G37]
gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
Mycoplasma genitalium JCVI-1.0]
Length = 1451
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 70/420 (16%), Positives = 144/420 (34%), Gaps = 70/420 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAVFIT 61
FVI+D ET G D +F+ R + +I+ + F KP + IT
Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSA-RKIKNNSEIDHQQFFLKIDKPIPKTI-----TEIT 468
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + L G+ + + +I + ++ +N I FD + + F +
Sbjct: 469 KIT-DEMLEGGIDQQQGLEKIRNYLDD--CVMVAHNGINFDLPFLQTQFEKYNIKPL--- 522
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS--FKLQDLALANGIEHVNAHDAKA 179
N L+D + +A +P + S KL+ + H A+
Sbjct: 523 -TNP-----LIDTLCLSWALNP---LFSSHTLSNICSKLKLE-------FDDERLHRAEY 566
Query: 180 DVYATLALVWLIREKKPKL-FEYLY----DYRNKNQLRKLIDIQNMTPLVHVSGMFGASR 234
D A + + +++ ++ L + K Q+ + + T +V+V G
Sbjct: 567 DTEALKKVFFYFKKQLKEMGINTLTEIDQNLNKKCQIDLMKRVFTNTAIVYVKNQRGFQN 626
Query: 235 SNTALIAPVAWHPRYKDSVIGCNLSG-DMRVFQDLDSVQ---LAKRLFTSHDELKGLVPV 290
L + H + V+ +L+ + VQ L +EL+
Sbjct: 627 LYEMLSIALTDHNANRPLVLASSLAKFRKSFLLTENPVQGDIFKAALTKPINELEKA--- 683
Query: 291 PIKEVHLNKCPILM---PIDYCKKEHFERWGIDHKRCLENLTL-LRQQTNLRDRFKAIYN 346
+ K ++ P Y + R G+ + + + L ++ T L+ + A+ +
Sbjct: 684 ------IEKVDFVLISQPNAYL--GYTLREGLKKELINDAIKLVIKTATKLK-KLVAVAS 734
Query: 347 KPYTSSSQDVD--SQL---------YDGFFADVDRQIM--DRILRTAPEQLSTLNLPFSD 393
Y + + + + F + +++ + L T E L ++ D
Sbjct: 735 DAYFIHPWENEYYKAIVCAKGLGGKWHRHFNNKEKEQTVPEVFLHTTDEMLKRMSFLGED 794
>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
ochracea F0287]
gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
ochracea F0287]
Length = 1485
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 73/194 (37%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D R Q A D +W + + F KP +P
Sbjct: 2 YLIFDTETTGLPRRWDAPLSDSDNWPRAVQIAWQLHD-EWGALIEHQDFLIKPDGFDVPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A + GI+ Q A G+ AE + ++ S ++G NI FD FYR
Sbjct: 61 -DAEKVHGISTQLAEAQGMPIAEVFKAFNEALSKAQ-YVVG-QNIGFDINIMGAEFYRYG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+S + V+ + + Q G +KL L + GI
Sbjct: 118 VESPLTQ----------MPVIDTCTEATANLCQIAGGKGGR--YKLPTLTELHSFLFGIP 165
Query: 171 HVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FAEAHNATADVEAT 179
>gi|256825435|ref|YP_003149395.1| hypothetical protein Ksed_16150 [Kytococcus sedentarius DSM 20547]
gi|256688828|gb|ACV06630.1| exonuclease, DNA polymerase III, epsilon subunit family [Kytococcus
sedentarius DSM 20547]
Length = 584
Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D ET G A +F V+V E + + +PA P + +TGI
Sbjct: 26 TFVVFDLETTGTSSADSEITEFGAVKVRGG-EVVGEFQTL-VRPAAGIPPYIQ--VLTGI 81
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T +E + + F ++ +N RFD + R R
Sbjct: 82 TTAMVSAAPSIE----QVLPNFLEFVGDAVLVAHNARFDTAFVRRACERTGRP------A 131
Query: 124 NGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
GN +LD + P+ + KL LA E +H A D
Sbjct: 132 PGNP---VLDTVHLARQLLPRPEV----------PNHKLSTLAAYFRAETTPSHRALDDA 178
Query: 182 YATLAL 187
AT+ +
Sbjct: 179 RATVDV 184
>gi|318060902|ref|ZP_07979623.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
Length = 239
Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 61/195 (31%), Gaps = 20/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A +R+D + T + EA I GI +
Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSS-GTVAHTRTWL--LDPGVEIPAEATAIHGIPTAR 67
Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR-WSWD 123
A DG I + + T ++ N R+D R+ +
Sbjct: 68 ARADGAPARGAVAEITEALAAELRAGTPLV-VMNARYDLSLLDRECRRHGVPALAELLGA 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D ++ +A S L L G+ AHDA++D A
Sbjct: 127 EPAPVID--PLVLDKHADRYR----------RGSRVLAALCAHYGVRLDTAHDARSDALA 174
Query: 184 TLALVWLIREKKPKL 198
L + P L
Sbjct: 175 ATLLARSLGAHHPTL 189
>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
Length = 1435
Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 65/181 (35%), Gaps = 27/181 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + A V++ R E I++ E F Y +TGI
Sbjct: 419 TYVVFDVETTGLSSVYDRIIELAAVKM-RNGEVIDTFEAF---INPGYHLSAMITELTGI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T L D EAE R FS +T ++ +N FD + + R
Sbjct: 475 T-DAMLADAPPEAEVMAR-FAEFSK-DTILVAHNA-SFDMGFLNKTYARLGM-PVPDQ-- 527
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++D + +PD S +L LA G+ H A D
Sbjct: 528 ------PVIDTLELSRLVNPD----------MRSHRLNVLAKHYGVTLEQHHRAVYDSET 571
Query: 184 T 184
T
Sbjct: 572 T 572
>gi|150007345|ref|YP_001302088.1| DNA polymerase III subunit epsilon [Parabacteroides distasonis ATCC
8503]
gi|255014024|ref|ZP_05286150.1| DNA polymerase III epsilon chain [Bacteroides sp. 2_1_7]
gi|256839636|ref|ZP_05545145.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
gi|262382080|ref|ZP_06075218.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
gi|298375333|ref|ZP_06985290.1| exonuclease [Bacteroides sp. 3_1_19]
gi|301310653|ref|ZP_07216592.1| exonuclease [Bacteroides sp. 20_3]
gi|149935769|gb|ABR42466.1| DNA polymerase III epsilon chain [Parabacteroides distasonis ATCC
8503]
gi|256738566|gb|EEU51891.1| DNA polymerase subunit III epsilon [Parabacteroides sp. D13]
gi|262297257|gb|EEY85187.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_33B]
gi|298267833|gb|EFI09489.1| exonuclease [Bacteroides sp. 3_1_19]
gi|300832227|gb|EFK62858.1| exonuclease [Bacteroides sp. 20_3]
Length = 256
Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 39/202 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N V +D ET G ++ DR + + V+V E + PE+ I G
Sbjct: 7 NPLVFFDLETTGINIVKDRIVEISYVKVFPN----GKEETKTRRINPGMPIPPESTAIHG 62
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + ++D E ++ + + GYN+ RFD F R D
Sbjct: 63 IT-DEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPMLAEEFLRAGVD----ID 115
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALANGI----EHVNAHD 176
N D+ + K++ L+ A NAH
Sbjct: 116 LNRRKFIDVQTIFH----------------------KMEQRTLSAAYKFYCNKSLENAHT 153
Query: 177 AKADVYATLALVWLIREKKPKL 198
A+AD AT ++ ++ P L
Sbjct: 154 AEADTLATYEVLKAQLDRYPDL 175
>gi|260801297|ref|XP_002595532.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
gi|229280779|gb|EEN51544.1| hypothetical protein BRAFLDRAFT_244216 [Branchiostoma floridae]
Length = 208
Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 47/217 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQF-----AGVRVDRQW-------------EKIESTEVFF 44
FV +D ET G D+P Q A VR D+ ++ V
Sbjct: 1 QTFVFFDLETTGL----DQPRQITEISLAAVRRDQLLTGTTVPPGGATIPRVMDKFTV-- 54
Query: 45 C-KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRF 101
C +P D P+A IT +T Q + V + + + + + P C++ +N RF
Sbjct: 55 CVRPRRDI--HPKAAEITNLTNQTLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGNRF 112
Query: 102 DDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
D + + + D + ++ +YA SF L
Sbjct: 113 DFPILKAELGESETVDL---FPQDVLCVDTMVAIKDLYA------------GQFKSFSLP 157
Query: 162 DLALANGIEH---VNAHDAKADVYATLALVWLIREKK 195
+ E AH A+ DV + +V + K+
Sbjct: 158 KIHETLFGEAPPPEVAHTAEGDVITMVKIVKKLGAKE 194
>gi|86355674|ref|YP_467566.1| DNA polymerase III subunit epsilon [Rhizobium etli CFN 42]
gi|86279776|gb|ABC88839.1| DNA polymerase III, epsilon chain protein [Rhizobium etli CFN 42]
Length = 240
Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 62/177 (35%), Gaps = 27/177 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + G+ + + +T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNTLHIYINPGDQKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ L+D A + I FF I +N FD + F R
Sbjct: 61 DEFLKDKKPFAAVADEILAFFGD-GKWIA--HNATFDMGFINAEFARIGLPPIL-----P 112
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKAD 180
+ D L + R + P+ L L GI H H A D
Sbjct: 113 DKVIDTLSMARRKHPMGPNS--------------LDALCRRYGIDNSHRTKHGALLD 155
>gi|89898431|ref|YP_515541.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
gi|89331803|dbj|BAE81396.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
Length = 228
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 57/180 (31%), Gaps = 30/180 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
+ YD ET G + DR + A + + V + P +P P EA I GI
Sbjct: 4 LIFYDTETTGTQIDKDRIIEIAAFN-----NVTKESFVTYVNPK---IPIPEEASKIHGI 55
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + + F ++ +NN FD R+ +
Sbjct: 56 TTSTVASAPDFPEAYKQ--FRDFCGNEAVLVAHNNDGFDFPLLEKECRRHSLEPLTLRT- 112
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D ++ + PD P + LQ L G AH A DV
Sbjct: 113 --------IDSLKWAQKYRPDL---PKHN-------LQYLRQVYGFAENQAHRALDDVIT 154
>gi|194333877|ref|YP_002015737.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
aestuarii DSM 271]
gi|194311695|gb|ACF46090.1| Exonuclease RNase T and DNA polymerase III [Prosthecochloris
aestuarii DSM 271]
Length = 189
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 24/194 (12%)
Query: 9 DYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + A Q + VD + C P + P+A+ I+G +
Sbjct: 11 DVETTGTNPAKHGIIQIGAIIEVDG---VVVEECNLKCAPHEGAEISPDALAISGTERSE 67
Query: 68 ALRDGVVEAEF-------SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ SR I Q+ GYN I FD + + ++R+ D Y
Sbjct: 68 LESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYN-IHFDLNFIQ-AWFRHHGDKYGI 125
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
D L ++ I P ++L+ + GI ++AHDA +D
Sbjct: 126 GSFINWRMLDPLPLLFIKDFTR--QITLPD-------YRLETVCRHFGI-ALHAHDAMSD 175
Query: 181 VYATLA-LVWLIRE 193
+ AT L+ L+ +
Sbjct: 176 IRATRELLLKLLYQ 189
>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 1412
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 41/231 (17%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+ F+++D ET G + D + ++ + +I T F KP + ++
Sbjct: 399 SATFIVFDLETTGLNPKEDEIIEIGAIK--MKGNEILETFSSFVKPQKEL----SSLITS 452
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT G +++ F+ ++ +N FD + RN +
Sbjct: 453 LTGITEDMLSGAGT-----IKQVLPEFTKFAEGGILVAHNA-SFDYGFIRNSVKKY---- 502
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ W+ +D + + S+ L ++ + H + H A
Sbjct: 503 FGGDWEMPC-----IDTLALAKSLYRA-----------KSYSLDNVVKRLKLGHFDHHRA 546
Query: 178 KADVYATLALVWL-IREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
D T ++ +++ K + E + + +LRK ++ ++ P VH+S
Sbjct: 547 YEDAKVTAEVLKKFLQQAKKRGVEKVNEL---EKLRKNQNLDSLKP-VHIS 593
>gi|218660611|ref|ZP_03516541.1| DNA polymerase III subunit epsilon [Rhizobium etli IE4771]
Length = 238
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D +DR + G+ + + +T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINPGDQKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ L+D AE + I FF +N FD + F R
Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWIA---HNATFDMGFINAEFARIGLPPIL 111
>gi|257458230|ref|ZP_05623380.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
gi|257444340|gb|EEV19433.1| DNA polymerase III subunit epsilon [Treponema vincentii ATCC 35580]
Length = 216
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/225 (23%), Positives = 80/225 (35%), Gaps = 36/225 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFI 60
T F+ +D ET G D A R + V+ DR + + +P P EA +
Sbjct: 13 TAAFIAFDTETTGLDPAAGRIVEIGAVKFDR-----RGIAARYNVLINPEIPMPEEAGKV 67
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT + ++ A F FF T ++ +N FD Y R
Sbjct: 68 NGITDEMLKDKPLIAAVFP----DFFDFIGTGVLVAHNAPFDINYINAELKRIGKSPL-- 121
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
GN D F+ + G +S+ LQDLA+ GI + AH A+ D
Sbjct: 122 ----GNKVVD-------TRIFAKEVFP------GLSSYALQDLAVQFGITALEAHRAEDD 164
Query: 181 VYATLALVWLIREK----KPKLFEYLYDYRNKNQLRKLIDIQNMT 221
+ L I + P+L E R + L+ +
Sbjct: 165 ARVCMELFDKILNRFLKNNPELVE---KIRAETDAASLLAPEEEQ 206
>gi|187478996|ref|YP_787020.1| exonuclease [Bordetella avium 197N]
gi|115423582|emb|CAJ50118.1| putative exonuclease [Bordetella avium 197N]
Length = 193
Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 66/180 (36%), Gaps = 31/180 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA--DDYLPDPEAVFI 60
+ FV+ D ET G +FA VRVD + + + + + +P A +
Sbjct: 26 SAFVVADLETTGLSAHACEILEFAAVRVDTEGQIASE----YSQLVRINGRVPSFIA-RL 80
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ Q+ +RDG E R F T + ++N FD + R R
Sbjct: 81 TGISQQEVIRDGKPIDEAFRAFCDFV---GTAPVFFHNASFDTRFLRATASRCGQA---- 133
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+DN ++ A A WP S KL LA G H A AD
Sbjct: 134 -FDNDTHC----TLLLARRA-------WPE----LRSHKLGMLAEHLG-AATPTHRALAD 176
>gi|329942731|ref|ZP_08291510.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287328|ref|YP_004422229.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|313847912|emb|CBY16907.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci RD1]
gi|325506611|gb|ADZ18249.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328814991|gb|EGF84980.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914571|gb|AEB55404.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
Length = 228
Score = 57.9 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 41/189 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDP-EA 57
MT + YD ET G + DR + A + + V + P +P P EA
Sbjct: 1 MT-TLIFYDTETTGTQIDKDRIIEIAAYNHKTKESF-------VTYVNPE---IPIPEEA 49
Query: 58 VFITGITPQKALRDG-VVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
I GIT + EA F F ++ +NN FD R+
Sbjct: 50 SKIHGITTSTVISAPKFPEAYKHFCD-----FCGNEAVLVAHNNDSFDFPLLEKECRRHA 104
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+D ++ + PD P + LQ L G A
Sbjct: 105 LPPLSLKT---------IDSLKWAQKYRPDL---PKHN-------LQYLRQVYGFAENQA 145
Query: 175 HDAKADVYA 183
H A DV
Sbjct: 146 HRALDDVIT 154
>gi|167949791|ref|ZP_02536865.1| exonuclease I [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 44
Score = 57.9 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 41 EVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74
V + +P+DD LP PEA +TGI+PQ A GV
Sbjct: 1 MVIYSRPSDDMLPQPEACMVTGISPQLAYAKGVP 34
>gi|169839866|ref|ZP_02873054.1| hypothetical protein cdivTM_22527 [candidate division TM7
single-cell isolate TM7a]
Length = 50
Score = 57.9 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYD--YRNK 208
+ N +EH AHDA +DV A +A+ LI + +LF YL R K
Sbjct: 1 RIIKINNLEHTKAHDALSDVEALIAVTKLIAKTNNRLFNYLLKCAIRKK 49
>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
Length = 1436
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 41/231 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+ +V++D ET G + + A V+V + E I+ F P ++
Sbjct: 419 DTYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFTSFA---NPH---HPLSMTTIE 471
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT VE E R+ + + ++ +N FD + F +
Sbjct: 472 LTGITDDMLKDAPDVE-EVLRQFYDWIGDS---VLVAHNASFDIGFLNVGFAKIGL---- 523
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
G ++D + PD + +L L IE H A
Sbjct: 524 -----GKVTNPVIDTLELARFLYPDL----------KNHRLNTLCKKFDIELTQHHRAIY 568
Query: 180 DVYAT-LALVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
D AT L+ ++++ + + L+ + R+K ++ Q P HV+
Sbjct: 569 DAEATGYLLMRMLKDAQERGILYHDELNKRSKEEVS----YQRSRPF-HVT 614
>gi|241206948|ref|YP_002978044.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860838|gb|ACS58505.1| DNA polymerase III, epsilon subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 240
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 56/180 (31%), Gaps = 33/180 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQW---EKIESTEVFFCKPADDYLPDPEAVFITG 62
+I+D ET G D DR + G+ + + I D P+A+ + G
Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHFPTGNTIHIFIN-----PGDQKVHPDALAVHG 58
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + L+D E + +I FF +N FD + R
Sbjct: 59 IT-DEFLKDKQPFGEVAEQILTFFGDAKWIA---HNATFDMGFINAELARIGLPPILPE- 113
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKAD 180
D L + R + P+ L L GI H H A D
Sbjct: 114 ----RVLDTLSMARRKHPMGPNS--------------LDALCRRYGIDNSHRTKHGALLD 155
>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type)
[Anoxybacillus flavithermus WK1]
Length = 1430
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 33/199 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + FV++D ET G D + A V+V + E I+ E F + + +
Sbjct: 411 MDDTFVVFDVETTGLSAVYDTIIELAAVKV-KNGEIIDRFESFA---NPHHPLSATTIEL 466
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T IT VE + + F + C++ +N FD + F +
Sbjct: 467 TKITDDMLKDAPDVE-----EVLEKFYHWIDDCVLVAHNATFDIGFLNAGFKKI------ 515
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ G ++D + P+ + +L L IE H A
Sbjct: 516 ---NRGKVTNPVIDTLELARYLYPEL----------KNHRLNTLCKKFNIELTQHHRAIY 562
Query: 180 DVYAT----LALVWLIREK 194
D AT + L+ + EK
Sbjct: 563 DAEATGYLLIHLLKELDEK 581
>gi|260587155|ref|ZP_05853068.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
gi|260542350|gb|EEX22919.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
Length = 244
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAVFIT 61
V +D ET G + + + A +RV++ +S +VF P + +P + V +T
Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT ++ +G+ EAE + R + ++ +N +FD ++ + R
Sbjct: 74 GITDEQLENEGITEAEAAARFTELIGG-GRVLLVAHNAQFDLLFTAEMLRR--------- 123
Query: 122 WDNGNS------RWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNA 174
+GN D LD + +P + A ++KL+D + N+
Sbjct: 124 --HGNGGPEALKAADYLDSLTVYKDRR----AYPHKLANAILTYKLED-------KVQNS 170
Query: 175 HDAKADVYATLALVWLIREKKPKLFEYL 202
H A DV A + + ++ L Y+
Sbjct: 171 HRAIDDVAALFEVCKAMDAERSDLLSYV 198
>gi|222084205|ref|YP_002542731.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
gi|221721653|gb|ACM24809.1| DNA polymerase III, epsilon subunit [Agrobacterium radiobacter K84]
Length = 236
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + G+ + + T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNKADRIIEIGGIELFNHF-PTGKTLHLYINPGDRKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
++L+D A+ + I FF +N FD + F R
Sbjct: 61 DESLKDKPPFADVADEILAFFEGAKWIA---HNATFDMGFVNAEFNRLGRPPIL 111
>gi|283798273|ref|ZP_06347426.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
gi|291074053|gb|EFE11417.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
Length = 244
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDPEAVFIT 61
V +D ET G + + + A +RV++ +S +VF P + +P + V +T
Sbjct: 15 VFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-KIVELT 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--NFYDSYR 119
GIT ++ +G+ E E + R + ++ +N +FD ++ + R N
Sbjct: 74 GITDEQLENEGITETEAAARFTELIGG-GRVLLVAHNAQFDLLFTAEMLRRHGNGGPEVL 132
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178
D LD + +P + A ++KL+D + N+H A
Sbjct: 133 -------KAADYLDSLTVYKDRR----AYPHKLANAILTYKLED-------KVQNSHRAI 174
Query: 179 ADVYATLALVWLIREKKPKLFEYL 202
DV A + + ++ L Y+
Sbjct: 175 DDVAALFEVCKAMDAERSDLLSYV 198
>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
7271]
gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM
7271]
Length = 1485
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D R Q A D +W + + F KP +P
Sbjct: 2 YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHD-EWGALIEHQDFLIKPDGFDVPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A + GI+ Q A G+ AE + ++ S ++G NI FD FYR
Sbjct: 61 -DAEKVHGISTQLAEAQGLPIAEVFKAFNEALSKAQ-YVVG-QNIGFDINIMGAEFYRYG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+S + V+ + + Q G +KL L + G+
Sbjct: 118 VESPLTQ----------MPVIDTCTEATANLCQIAGGKGGR--YKLPTLTELHSFLFGVP 165
Query: 171 HVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FAEAHNATADVEAT 179
>gi|218261817|ref|ZP_03476532.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
DSM 18315]
gi|218223763|gb|EEC96413.1| hypothetical protein PRABACTJOHN_02203 [Parabacteroides johnsonii
DSM 18315]
Length = 256
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 39/204 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G ++ DR + + V+V E + + PE+ I
Sbjct: 5 LKNPLVFFDLETTGINIVKDRIVEISFVKVYPN----GKEESKTRRINPEMPIPPESTAI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT + ++D E ++ + + GYN+ RFD F R D
Sbjct: 61 HGIT-DEDVKDCPTFKEIAKSLATQI--EGCDLAGYNSNRFDIPLLAEEFLRAGVD---- 113
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALANGI----EHVNA 174
N D+ + K++ L+ A NA
Sbjct: 114 IDLNRRKFIDVQTIFH----------------------KMEQRTLSAAYKFYCDKSLENA 151
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A+AD AT ++ ++ P+L
Sbjct: 152 HTAEADTMATYEVLKAQLDRYPEL 175
>gi|295693537|ref|YP_003602147.1| DNA polymerase iii [Lactobacillus crispatus ST1]
gi|295031643|emb|CBL51122.1| DNA polymerase III [Lactobacillus crispatus ST1]
Length = 318
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
++ + D ET G DR + GV+V R + ++ ++ +P A
Sbjct: 31 TNYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ +++G+ + R +F IIGYN + FD + + +
Sbjct: 87 NGITEEQIVKEGIPAEQAIREFREFIGD--DVIIGYN-VNFDLNFL-YDLSQKYGLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + R Y P L + A GI V AH D
Sbjct: 142 ----DNDYVDVLRLARTYY---------PRERHNR---LLDCMQRA-GIAQVEAHHGLQD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|257068061|ref|YP_003154316.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Brachybacterium faecium DSM 4810]
gi|256558879|gb|ACU84726.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Brachybacterium faecium DSM 4810]
Length = 238
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G +VA DR A V + T + + +P+P A + GI+ +
Sbjct: 16 FDTETTGTNVARDRIVTVALVHSVGPGRE-GETVATWLIDPEMEIPEP-AQRVHGISTEH 73
Query: 68 ALRDGVVEAEF----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A G+ AE + I + + + NI FD N R +
Sbjct: 74 ARAHGMKAAEALDEVAALIAEALAKEVPLVA--FNISFDLAILENELTRLGLPTLA---- 127
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH-VNAHDAKADVY 182
D+ V+ A+ G + L D+ G+E H A DV
Sbjct: 128 -QRLGHDIAPVIDALVIDR----GVDRYRKGKRT--LTDVLAHYGLEQDGRLHTADVDVS 180
Query: 183 ATLALVWLIREKKPKL 198
ATL ++ I K PK+
Sbjct: 181 ATLDVLRAITLKYPKI 196
>gi|81428523|ref|YP_395523.1| ATP-dependent helicase [Lactobacillus sakei subsp. sakei 23K]
gi|78610165|emb|CAI55214.1| Putative ATP-dependent helicase, DinG family [Lactobacillus sakei
subsp. sakei 23K]
Length = 944
Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 63/192 (32%), Gaps = 33/192 (17%)
Query: 9 DYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-TGITPQ 66
D ET G + DR QF V KI T P D P + T IT
Sbjct: 11 DLETTGTNIKDGDRIIQFGCALVQNG--KIIQTISQDVNPLRDV---PTKIQHLTHITAD 65
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + E + + + + S T + +N I FD + R +
Sbjct: 66 QLELAPIFE-DLAPTLVEILS--GTVFVAHN-INFDLPFLNGELTRVGLQPLDLAG---- 117
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+D + P+ S++LQDL IEH N H A +D T
Sbjct: 118 -----IDTVELAQIILPEA----------PSYRLQDLTQLLEIEHDNPHQADSDALVT-- 160
Query: 187 LVWLIREKKPKL 198
L + +L
Sbjct: 161 -AKLFLKLSARL 171
>gi|291529581|emb|CBK95167.1| DNA polymerase III, alpha subunit (gram-positive type) [Eubacterium
rectale M104/1]
Length = 345
Score = 57.5 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 64/191 (33%), Gaps = 39/191 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVR---VDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
V+YD ET G R F+ +R + ++I+ +F +
Sbjct: 17 IVVYDLETTGFKSKNTRILSFSAIRYQVSEHGMDEIDRRNMF---LNPMMTIPAYITAVN 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD----YYSRNIFYRNFYDS 117
IT +K D E E I + + + GYNN FDD +R I + +
Sbjct: 74 HITNEKV-ADCPTEYEAGAEILSYLNSADFVS-GYNNANFDDGLVNEMARRIGFGKWIPK 131
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--- 174
+DVM A +FKL LA H +A
Sbjct: 132 NE------------IDVMILAKAV--------LTKQDVPNFKLGTLAE---YFHADAGLE 168
Query: 175 -HDAKADVYAT 184
H++ DV AT
Sbjct: 169 FHNSIDDVIAT 179
>gi|62185003|ref|YP_219788.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
gi|62148070|emb|CAH63824.1| DNA polymerase III, epsilon chain [Chlamydophila abortus S26/3]
Length = 228
Score = 57.5 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 61/187 (32%), Gaps = 37/187 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
MT + YD ET G + DR + A + + V + P +P P EA
Sbjct: 1 MT-TLIFYDTETTGTQIDKDRIIEIAAYN-----HITKESFVTYVNPE---IPIPEEASK 51
Query: 60 ITGITPQKALRDG-VVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I GIT + EA F F + ++ +NN FD R+ +
Sbjct: 52 IHGITTSTVISAPKFPEAYKHFC-----EFCGNDAVLVAHNNDSFDFPLMEKECRRHALE 106
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D ++ + PD P + LQ L G AH
Sbjct: 107 PLSLKT---------IDSLKWAQKYRPDL---PKHN-------LQYLRQVYGFAENQAHR 147
Query: 177 AKADVYA 183
A DV
Sbjct: 148 ALDDVIT 154
>gi|325291458|ref|YP_004277322.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
gi|325059311|gb|ADY63002.1| DNA polymerase III epsilon chain [Agrobacterium sp. H13-3]
Length = 233
Score = 57.5 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 31/179 (17%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G + LDR + G+ ++ + T + P +D P+A+ + GIT
Sbjct: 4 IIFDTETTGLESKLDRVIEIGGIELNNHF-PTGRTLHIYINP-EDRKVHPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
L+D AE I +FF + +N FD + F R
Sbjct: 61 DDFLKDKPKFAEVVDEIREFFEGARWVA-----HNATFDMGFINAEFARLGIAPVSSELV 115
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKAD 180
D L + R + P+ L L GI H H A D
Sbjct: 116 T-----DTLSLARRKHPMGPNS--------------LDALCRRYGIDNSHRTKHGALLD 155
>gi|227529135|ref|ZP_03959184.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
vaginalis ATCC 49540]
gi|227350979|gb|EEJ41270.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
vaginalis ATCC 49540]
Length = 960
Score = 57.5 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
D ET G V DR Q V V + E I E K +P +TGI
Sbjct: 29 DLETTGTSVNHGDRIIQVGCVLV-QDGEIINHFET---KINPRVAVPR-HITQLTGIKNN 83
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ E + + ++ S T + +N + FD + R Y S
Sbjct: 84 DVRNAPLFE-DIAGTLYSLLS--GTIFVAHN-VNFDFPFLNAELERAGYPSL-------- 131
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
+D + P S++L+DL + IEH + H A +D AT
Sbjct: 132 -SIKAIDTVTLSQILMPTV----------KSYRLRDLTSSLSIEHDHPHSAVSDAEATAH 180
Query: 185 --LALVWLIRE 193
+ L+ +RE
Sbjct: 181 LLVDLMKQLRE 191
>gi|302522606|ref|ZP_07274948.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
gi|302431501|gb|EFL03317.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
Length = 239
Score = 57.1 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 64/195 (32%), Gaps = 20/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D+ DR A +R+D + T + EA I GI +
Sbjct: 11 FDLETTGTDIEQDRIVTAAVIRLDAS-GAVAHTRTWL--LDPGVEIPAEATAIHGIPTAR 67
Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
A DG I + + T ++ N R+D R+ +
Sbjct: 68 ARADGAPARGAVAEITEALAAELRAGTPLV-VMNARYDLSLLDRECRRHGVPALA--EML 124
Query: 125 GNSRWDLLD-VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
G ++D ++ +A S L L G+ AHDA++D A
Sbjct: 125 GTEPAPVIDPLVLDKHADRYR----------RGSRVLAALCAHYGVRLDTAHDARSDALA 174
Query: 184 TLALVWLIREKKPKL 198
L + P L
Sbjct: 175 ATLLARSLGAHHPTL 189
>gi|259502638|ref|ZP_05745540.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169453|gb|EEW53948.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 224
Score = 57.1 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/199 (22%), Positives = 74/199 (37%), Gaps = 42/199 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--------CKPADDYLPD 54
+ FV D ET G + + V+ T F+ K A D
Sbjct: 53 SDFVSLDLETSGLNPTTAQIISIGAVK-----RIAGHTTTFYRLVKLQSGKKLAGDI--- 104
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+TG+ Q+ +GV E + Q F+ I+GYN + FD+ + + R
Sbjct: 105 ---ARLTGLNSQQLATEGVAVKEALIDL-QSFAKKLP-IVGYN-LLFDERFLQTAVIRAG 158
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ N D+L ++ + F + + L + GI++ A
Sbjct: 159 IVQF------NNKMVDVLPYVKTVDKFCDN-------------YHLATILTRYGIKNEQA 199
Query: 175 HDAKADVYATLALV-WLIR 192
H++ AD AT+ LV LI+
Sbjct: 200 HNSLADATATMKLVDKLIK 218
>gi|332298225|ref|YP_004440147.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
12168]
gi|332181328|gb|AEE17016.1| DNA polymerase III, epsilon subunit [Treponema brennaborense DSM
12168]
Length = 186
Score = 57.1 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 37/188 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITG 62
F +D ET G +R + +R D+ I ++ KP P A I
Sbjct: 23 FTAFDTETTGLKPEYERLIEIGAIRFDKN-GIIARYDILINPGKPIP-----PGASAINN 76
Query: 63 ITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
IT ++E+ +F + V + N FD + R+ ++ +
Sbjct: 77 ITDDMVRNCPLIESVLPDFLTFVRDSVLVAH-------NAGFDLSFVNKELERSGFNPLK 129
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N+ D + + P + KLQ LA GI+ NAH A+
Sbjct: 130 ------NNAAD---TVHLARSRFPQL----------PNHKLQSLAAYFGIDVRNAHRAED 170
Query: 180 DVYATLAL 187
D + +
Sbjct: 171 DARVCMEV 178
>gi|298485963|ref|ZP_07004037.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159440|gb|EFI00487.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 244
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 45/215 (20%), Positives = 73/215 (33%), Gaps = 34/215 (15%)
Query: 1 MTNHFVIYDYETFGR----DVALD--RP--AQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M+ YD ET G D + D +P + Q E ++S E KP +
Sbjct: 40 MSQLIAFYDTETTGLPRFKDPSDDPRQPHLVDICILLYTPQGELVDSFEAMI-KPEGWTI 98
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
PD A I GIT + AL G+ E E + + + +N+ FDD R R
Sbjct: 99 PDEVA-AIHGITTEMALEQGIPELEALGGFLRVYEQAGLRVA--HNVSFDDRIMRIAIKR 155
Query: 113 NFYDSYRWSWD---NGNSRWDLLDVMR--------AIYAFSPDGIQWPSRDDGATSFKLQ 161
+ + N + ++++ A P + P+ + F +
Sbjct: 156 FIGEQAANEFKAMPNYCTCQSSKNIVKCPPTAKMIAAGFGRPGMYKVPTVAEALRHFTGE 215
Query: 162 DLALANGIEHVNAHDAKADVYATLALVWLIREKKP 196
+L V H A+ D A + P
Sbjct: 216 EL--------VGGHRARPDTEA---CARIYFAMNP 239
>gi|319956599|ref|YP_004167862.1| exonuclease rnase t and DNA polymerase iii [Nitratifractor
salsuginis DSM 16511]
gi|319419003|gb|ADV46113.1| Exonuclease RNase T and DNA polymerase III [Nitratifractor
salsuginis DSM 16511]
Length = 294
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 65/276 (23%), Positives = 92/276 (33%), Gaps = 46/276 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D A DR Q A + +D E +E C P + D A I ITP+
Sbjct: 7 DTETTGTD-AEDRICQLAYLVLDESGEVVEHYNEL-CTPPLEIKYDAMA--IHHITPEML 62
Query: 69 LRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E E RR+ + S N +I N FD + N
Sbjct: 63 EGKPACTETEGFRRLRELNSPENLLVI--QNAPFDLAMLEKEGFEN-------------- 106
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD------LALANGIEHVNAHDAKADV 181
R L+D R + F PD P + L L G E V AHDA DV
Sbjct: 107 RMRLIDTFRLVRKFMPDS---PQHGQQYLRYALGLYREEPALIEKLG-EEVRAHDALGDV 162
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIA 241
++ L+EYL ++ ++ ++ L+ M G R
Sbjct: 163 IV-------LKH----LYEYLLR---EHSAEEMAELCEGPILLEQMPM-GRHRGKRIEEV 207
Query: 242 PVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277
+ V +L D+R + Q R+
Sbjct: 208 ALQHRNDLLYMVENFDLDQDVRYSFEYWLEQTKDRV 243
>gi|295397429|ref|ZP_06807516.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
gi|294974330|gb|EFG50070.1| DNA polymerase III [Aerococcus viridans ATCC 11563]
Length = 314
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 56/255 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-----DRQWEKIESTEVFFCKPADDYLPDPEAVF 59
+V+ D ET G + D + + +R+ DR + + +P ++
Sbjct: 25 YVMIDIETTGLKPSNDEILELSAIRIRDHQMDRTFSTLVQPN----RPISGFI-----TN 75
Query: 60 ITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ + +E EF I + I+GYN + FD + + +
Sbjct: 76 LTGISNHMVMTAPPIEQAIPEFLDFIQED------IILGYN-VNFDLSFIYDTAVNLYNF 128
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N D+L + R + KL +A GI + AH
Sbjct: 129 PV------RNDYLDVLTIAR-------------KLVTETPNHKLGTMAQFYGISYEGAHR 169
Query: 177 AKADVYATLALVWLIREKKPKLF--------EYLYDYRNKN-QLRKL----IDIQNMTPL 223
D Y T+ + + + +++ ++ K ++ L D M PL
Sbjct: 170 GLTDCYITVEVYNQLFNQAKQVYQSEQDFKNDFYRRAYPKQIKVEDLKAETSDFNPMHPL 229
Query: 224 VHVSGMFGASRSNTA 238
+ + +F N +
Sbjct: 230 FNKTIVFSGDLDNMS 244
>gi|261369077|ref|ZP_05981960.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
variabile DSM 15176]
gi|282568762|gb|EFB74297.1| putative DNA polymerase III, epsilon subunit [Subdoligranulum
variabile DSM 15176]
Length = 318
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 37/203 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITGITPQ 66
D ET G D D Q + D ++ + KP +D+ PEA + IT +
Sbjct: 123 DIETTGLDFNQDEILQV-SIL-DIDTGEVL--LDSYVKPYFTEDW---PEARRVNHITKE 175
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ E R++Q + T I+GYN FD+ F Y S+++
Sbjct: 176 MVCNAPYI-YELLPRLNQVLAQVKT-IVGYNFTGFDN---------GFLTRYGASFNDET 224
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-----EHVNAHDAKADV 181
DL ++ AIY P D FK ++L+ AH++ AD
Sbjct: 225 IVEDLSNIFAAIYGEFS-----PKHGD----FKFKNLSTCADYFGYDWGEETAHNSLADC 275
Query: 182 YATLALVWLIREKKPKLFEYLYD 204
AT + ++ + ++++ LY
Sbjct: 276 RAT---AFCYKKTQEEMYQELYQ 295
>gi|256844192|ref|ZP_05549679.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
gi|256614097|gb|EEU19299.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN]
Length = 318
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
++ + D ET G DR + GV+V R + ++ ++ +P A
Sbjct: 31 TNYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT + +++G+ + R +F IIGYN + FD + + +
Sbjct: 87 NGITEAQIVKEGIPAEQAIREFREFIGD--DVIIGYN-VNFDLNFL-YDLSQKYGLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + R Y P L + A GI V AH D
Sbjct: 142 ----DNDYVDVLRLARTYY---------PRERHNR---LLDCMQRA-GIAQVEAHHGLQD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|261417986|ref|YP_003251668.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Geobacillus sp. Y412MC61]
gi|319767201|ref|YP_004132702.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
Y412MC52]
gi|261374443|gb|ACX77186.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
Y412MC61]
gi|317112067|gb|ADU94559.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
Y412MC52]
Length = 909
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 38/199 (19%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M FVI D ET G DR Q V+ +E FF + P +F
Sbjct: 1 MATRFVIIDLETTGNGPKKGDRIIQLGMAVVEDGL-IVERFASFF---NPE---QPIPLF 53
Query: 60 I---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I T I ++ + + A+ + I + +N + FD + + R +
Sbjct: 54 IQQLTNIN-EQMVEGAPLFADKAGEIAALMH--GAYFVAHN-VDFDLPFLQAELERAGWP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +D + I P+ + S+KL DLA G+ H H
Sbjct: 110 PFA---------GPTIDTVELAR------IVLPTAE----SYKLGDLARQLGLRHDRPHQ 150
Query: 177 AKADVYAT----LALVWLI 191
A +D T +AL+ +
Sbjct: 151 ADSDAEVTAKLFIALLKRL 169
>gi|161507964|ref|YP_001577928.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
gi|160348953|gb|ABX27627.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
Length = 317
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 29/187 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+++ + D ET G DR + GV+V R + ++ P ++ +P A
Sbjct: 31 SNYTMLDVETTGLSPFRDRITELGGVKV-RNGQIVDQYTNLVKFPKNNKVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ +G+ + + F +T IIGYN + FD + + +
Sbjct: 87 NGITEEQITNEGIPAEQAIKEFR-EFIGDDT-IIGYN-VNFDLNFL-YDLSQKYNLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + R Y +L D GI V H AD
Sbjct: 142 ----NNDYVDVLRLARVYY--------------PRQHNRLIDCMQRAGIAQVEQHHGLAD 183
Query: 181 VYATLAL 187
T+ +
Sbjct: 184 SLDTIKV 190
>gi|227877650|ref|ZP_03995697.1| DNA polymerase [Lactobacillus crispatus JV-V01]
gi|256850746|ref|ZP_05556169.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
gi|227862746|gb|EEJ70218.1| DNA polymerase [Lactobacillus crispatus JV-V01]
gi|256712459|gb|EEU27457.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
Length = 318
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
++ + D ET G DR + GV+V R + ++ ++ +P A
Sbjct: 31 TNYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT + +++G+ + R +F IIGYN + FD + + +
Sbjct: 87 NGITEAQIVKEGIPAEQAIREFREFIGD--DVIIGYN-VNFDLNFL-YDLSQKYGLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + R Y P L + A GI V AH D
Sbjct: 142 ----DNDYVDVLRLARTYY---------PRERHNR---LLDCMQRA-GIAQVEAHHGLQD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|89099885|ref|ZP_01172757.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
gi|89085443|gb|EAR64572.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
Length = 934
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 71/196 (36%), Gaps = 37/196 (18%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAV 58
M+N +V+ D ET G D+ QFA V ++ + I+ +P A
Sbjct: 1 MSNKYVVVDLETTGNSAKKGDKIIQFAAVVMEGG-KIIDQYSSL---LNPGKEIP---AF 53
Query: 59 F--ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TG+ + D V AE + ++ + + +N + FD + + +
Sbjct: 54 IEELTGLN-DSMVSDAPVFAEIAPKVMELLED--AYFVAHNVL-FDLSFLQEELLDAGFP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ ++D + P S+KL DL+ GI H H
Sbjct: 110 GF---------YGPVIDTVELARTVLPCS----------DSYKLSDLSAKEGIMHDRPHQ 150
Query: 177 AKADVYATLALVWLIR 192
A +D YAT L+
Sbjct: 151 ADSDAYAT---AKLLH 163
>gi|319938082|ref|ZP_08012482.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
gi|319806988|gb|EFW03627.1| hypothetical protein HMPREF9488_03318 [Coprobacillus sp. 29_1]
Length = 221
Score = 57.1 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 27/193 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++++YD ET G D + + V+ ++S C V ITGI
Sbjct: 39 NYIMYDLETTGL-TNKDHIIEIGAIYVEDNT-IVDSFSAL-C--NPGIFITQRIVEITGI 93
Query: 64 TPQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYR-NFYDSYRWS 121
T K L D E + ++ ++ S + +G N FD+ + R + S
Sbjct: 94 T-NKMLSDKPPEYDVVKQFVEWCNSKETSLAVGQNINSFDNRMLKVATKRFKLNFPFERS 152
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKAD 180
LD ++ I ++ G S + DL GIE+V AH A D
Sbjct: 153 ----------LDTLKMA-------INMKLKEKGLVASNQQSDLGKLYGIEYV-AHRAIND 194
Query: 181 VYATLALVWLIRE 193
V A + +++
Sbjct: 195 VEALYQIFEHLKK 207
>gi|307328999|ref|ZP_07608167.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
gi|306885361|gb|EFN16379.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
Length = 240
Score = 57.1 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 47/213 (22%), Positives = 72/213 (33%), Gaps = 33/213 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G D R A V V R E I E AD +P P AV + GIT +
Sbjct: 11 FDLETTGTDPRTSRIVTAAVVEV-RDGEPIGRREW----LADPQVPIPDGAVAVHGITNE 65
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR--WS 121
+A +G E + + ++ YN FD R+
Sbjct: 66 RAAAEGRSAREVVEEVAEVLVAHWRAGAPVVAYNA-AFDLSLLAAELGRHGLRPLSERLE 124
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
D + RA+ + G + L+ + G+ H AHDA AD
Sbjct: 125 GAETGPVVDPYTIDRAVDRYR----------KGKRT--LEAVCGEYGVVHDRAHDAGADA 172
Query: 182 YATLALVWLIREKKP-----KLFEYLYDYRNKN 209
A + + + E+ +L++ K
Sbjct: 173 LAAVRVACALAERHREVAGLELWD----LHRKQ 201
>gi|298244280|ref|ZP_06968086.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
44963]
gi|297551761|gb|EFH85626.1| DNA polymerase III, epsilon subunit [Ktedonobacter racemifer DSM
44963]
Length = 684
Score = 57.1 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 48/211 (22%), Positives = 77/211 (36%), Gaps = 35/211 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G DR + AGVR+ R E +++ + + +P P V TGI+
Sbjct: 101 FVVVDTETTGLRPGPDRVIEVAGVRM-RNGEILDTFQSLV--HPERRIP-PFIVRFTGIS 156
Query: 65 PQKAL---RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
P+ + + +F R I ++G+N + FD + + + +
Sbjct: 157 PEMLADAPKARDIMPDFLRFIE------GATLVGHN-LSFDVNFLTHE-AQLLGLPFPVE 208
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
LD + P G FKL +A I+ N H A D
Sbjct: 209 G---------LDTILLSRRLLP----------GLKRFKLDMVAQYLQIQTHNRHRALGDA 249
Query: 182 YATLAL-VWLIREKKPKLFEYLYDYRNKNQL 211
T + L+ K + L R + QL
Sbjct: 250 QVTADVFARLLERAKIQEIHTLGHLRLRQQL 280
>gi|167753685|ref|ZP_02425812.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
gi|167658310|gb|EDS02440.1| hypothetical protein ALIPUT_01966 [Alistipes putredinis DSM 17216]
Length = 257
Score = 57.1 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 64/194 (32%), Gaps = 45/194 (23%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
+ +D ET G D+A DR + + V+V V + +P P EA I GI
Sbjct: 9 IIFFDLETTGIDIARDRIVEISMVKVMPD----GEEIVRTRRINPG-MPIPAEATAIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + + +I + + G+N+ RFD F R D
Sbjct: 64 TDEDVKDCPLFP-----QIAKSLAQFIEGCDFGGFNSNRFDLPMLVEEFMRAGVDVDFRK 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN------GIEHVNAH 175
+DV + K++ L G + +AH
Sbjct: 119 RK-------FIDVQNIFH-------------------KMEQRTLVAAYKFYCGKDLADAH 152
Query: 176 DAKADVYATLALVW 189
A+AD AT ++
Sbjct: 153 SAEADTLATYEVLK 166
>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens CPE str. F4969]
gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
perfringens CPE str. F4969]
Length = 876
Score = 57.1 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 40/200 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
+ +++D E+ G DV D Q A ++++++ E ++ E F L + ++V
Sbjct: 508 ENIIVFDVESTGVDVTEDEIIQIAAIKLNKKGEVVDKFEKF--------LKNKKSVKDSY 559
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYR-NFY 115
++ G + + R G + ++ + F ++ I+G+N +++D + R N
Sbjct: 560 YVHGFSDEMLQRIGEDK----EKVLKEFVEYSKDSIIVGHN-VQYDINILCSELERSNLG 614
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ +D LD+ R Y G ++KL++L+ +H +H
Sbjct: 615 KPKFKTF------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKPSH 655
Query: 176 DAKADVYATLALV-WLIREK 194
DA D+ AT L+ I EK
Sbjct: 656 DAMDDIIATGELLVRAINEK 675
>gi|169841869|ref|ZP_02874978.1| exonuclease I [candidate division TM7 single-cell isolate TM7a]
Length = 53
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 96 YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLD 133
YNNIRFDD + R + +RNFYD Y WS+ + SRWD+LD
Sbjct: 1 YNNIRFDDEFIRALLWRNFYDPYEWSYKDNRSRWDMLD 38
>gi|329942403|ref|ZP_08291213.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|332287044|ref|YP_004421945.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|313847640|emb|CBY16628.1| putative DNA polymerase III epsilon chain [Chlamydophila psittaci
RD1]
gi|325507354|gb|ADZ18992.1| DNA polymerase III subunit epsilon [Chlamydophila psittaci 6BC]
gi|328815313|gb|EGF85301.1| exonuclease, DNA polymerase III, epsilon subunit family domain
protein [Chlamydophila psittaci Cal10]
gi|328914277|gb|AEB55110.1| DNA polymerase III, epsilon chain [Chlamydophila psittaci 6BC]
Length = 249
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 89/264 (33%), Gaps = 50/264 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D E G DV DR +FA +R I+S E D + E+ I I+
Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAIRFTFD-RVIDSMETL---INPDRVISAESQRIHHIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
L+D AE +I F I+G+ ++ FD ++
Sbjct: 65 -DAMLKDQPRIAEVFPKIKS-FLKEGDYIVGH-SVGFDLQVL--------SQEAERIGES 113
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S++ ++D +R Y SP+ L+ LA+ + + H A DV
Sbjct: 114 FLSKYYVIDTLRLAKEYGDSPNN-------------SLEALAVHFNVPYDGNHRAMKDVE 160
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
+++ + +R QL++++ P+ G + P
Sbjct: 161 INISIFK----------HFCKRFRTIEQLKQMLS----KPIKMKYMPLGKHKGRCFSEIP 206
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQ 266
+++ + D +
Sbjct: 207 LSYLQ------WASKMDFDPDLLF 224
>gi|228474048|ref|ZP_04058789.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
gi|228274562|gb|EEK13403.1| exonuclease [Capnocytophaga gingivalis ATCC 33624]
Length = 257
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+T +D ET G DV+ DR + + ++V ++ + P +P P A
Sbjct: 5 LTRPICFFDLETTGTDVSRDRIVEISILKVWPNGN--RESKTYLVNPT---IPIPPASTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI+ + + E +++IH + + GYN+ RFD R D
Sbjct: 60 IHGIS-DERVAQAPTFKELAKQIHAMIKDSD--LAGYNSDRFDIPLLAEELLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----EHV 172
+DL + + D T F K++ L+ A E
Sbjct: 114 ---------FDLKNRVTV---------------DVQTIFHKMEQRTLSAAYKFYCKKELD 149
Query: 173 NAHDAKADVYATLALVW 189
NAH A AD AT ++
Sbjct: 150 NAHTAAADTEATYEILK 166
>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
Length = 1438
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +V++D ET G + +F ++ I+ + FF KP P IT
Sbjct: 402 SQTYVVFDLETTGLSPRFNEIIEFGASIIENG--IIKESHQFFIKPTKPIPPS--ITEIT 457
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + +G + E R+I+ +N +FD + F + D
Sbjct: 458 KIT-DNTVANGYSQEEGVRKIYDILKNRICVA---HNAKFDINVCKENFLKYGLD----- 508
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179
NS+ +D + D A S++L+ +A + + AH A
Sbjct: 509 ----NSKIIGIDSLAIARFL----------IDEAKSYRLEIVAKKFNVYYARNEAHRADY 554
Query: 180 DVYA-----TLALVWLIREKK 195
D L ++ L REK
Sbjct: 555 DANVLANVWILMILKLAREKN 575
>gi|62184729|ref|YP_219514.1| DNA polymerase III subunit epsilon [Chlamydophila abortus S26/3]
gi|62147796|emb|CAH63542.1| putative DNA polymerase III epsilon chain [Chlamydophila abortus
S26/3]
Length = 249
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 50/264 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D E G DV DR +FA +R I+S E D + E+ I I+
Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAIRFTFD-SVIDSMETL---INPDRVISAESQRIHHIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
L+D AE +I F I+G+ ++ FD +
Sbjct: 65 -DAMLKDQPRIAEVFPKIKS-FLKEGDYIVGH-SVGFDLQVL--------SQEAERIGET 113
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S++ ++D +R Y SP+ L+ LA+ + + H A DV
Sbjct: 114 FLSKYYIIDTLRLAKEYGDSPNN-------------SLEALAVHFNVPYDGNHRAMKDVE 160
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
+++ + +R QL++++ P+ G + P
Sbjct: 161 INISIFK----------HFCKRFRTIEQLKQMLS----KPIKMKYMPLGKHKGRCFSEIP 206
Query: 243 VAWHPRYKDSVIGCNLSGDMRVFQ 266
+++ + D +
Sbjct: 207 LSYLQ------WASKMDFDPDLLF 224
>gi|325953822|ref|YP_004237482.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
gi|323436440|gb|ADX66904.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
Length = 253
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 45/196 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T + +D ET G ++A DR + A V+ E+ + + PE I
Sbjct: 3 LTKNICFFDLETTGTNIAKDRIVEIAIVKAYTN----GEKEIKTWRVNPEMPIPPETSLI 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI + ++D E + +I + + + G+N+ RFD F RN D
Sbjct: 59 HGIY-DEDVKDAPTFREIAPQIVELIKDSD--LAGFNSNRFDIPLLAEEFLRNGID---- 111
Query: 121 SWDNGNSRWDL-----LDVMRAIYAFSP----DGIQWPSRDDGATSFKLQDLALANGIEH 171
+DL +DV + P ++ D L+
Sbjct: 112 --------FDLEKHRPIDVQVIFHKMEPRNLAAAYKFYCDKD------LE---------- 147
Query: 172 VNAHDAKADVYATLAL 187
NAH A+AD AT +
Sbjct: 148 -NAHSAEADTLATYEV 162
>gi|225175900|ref|ZP_03729892.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
alkaliphilus AHT 1]
gi|225168488|gb|EEG77290.1| Exonuclease RNase T and DNA polymerase III [Dethiobacter
alkaliphilus AHT 1]
Length = 198
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 60/186 (32%), Gaps = 36/186 (19%)
Query: 7 IYDYETFGRDVALDRPAQFA----GVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFIT 61
D ET G + + A R D +I + + +P P A +
Sbjct: 14 FVDVETTGLSPRKEEIVELAICLFAYRRDSG--EITRIVDRYVGQREPGVPVSPGAARVH 71
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
G+ + + RI + +N FD + +F
Sbjct: 72 GLRMADLRGKQLD----TARIEAILHSAEFIVA--HNASFDRGFVARLF------PVS-- 117
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
G +W S GI W + G S LQ+L A+ I+ AH A+ DV
Sbjct: 118 ---GRKQW----------LCSMSGIDW--KGKGFPSRGLQNLLRAHRIDAGRAHRAEDDV 162
Query: 182 YATLAL 187
ATL L
Sbjct: 163 LATLKL 168
>gi|331701432|ref|YP_004398391.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
gi|329128775|gb|AEB73328.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
buchneri NRRL B-30929]
Length = 945
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 39/194 (20%)
Query: 3 NHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---- 57
F + D ET G D++ D R QF+ V + I++ D P E
Sbjct: 5 TTFAVVDIETTGTDISADNRTIQFSCCLVSNN-KIIKTFVT-------DINPQREVPNRI 56
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
V +TGIT + L+ + + +++ + NT + +N + FD + + F R Y
Sbjct: 57 VQLTGIT-NERLQKAKTFDQVAAQLYSLLN--NTVFVAHN-VNFDFPFLNSEFQRVGYPE 112
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ +D + P +S++LQDL+ IEH + H A
Sbjct: 113 LQIE---------AIDTVTLSQILLPTL----------SSYRLQDLSSYFNIEHDHPHTA 153
Query: 178 KADVYATLALVWLI 191
+D AT L+
Sbjct: 154 DSDALAT---AKLL 164
>gi|304440352|ref|ZP_07400241.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371104|gb|EFM24721.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Peptoniphilus duerdenii ATCC BAA-1640]
Length = 296
Score = 56.7 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 34/195 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
FV D ET G D ++ + ++ D ++ KI + K + + +
Sbjct: 127 KTFVFLDIETDGLDEKTNKIIEIGAIKSDSKEEFHKIVKIDT---KLPKNII------EL 177
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT K L G E + + +F + + ++GY I+FD + N D
Sbjct: 178 TGIT-DKELESGENIKEILKELKEFIGLED--LVGYG-IKFDIKFINRKLKLNGLDVLT- 232
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N WDL+D ++ +F + +KL+ + GI+ H A D
Sbjct: 233 -----NKTWDLMDFVKREKSFLEN-------------YKLETVLKEYGIDKKVPHRALED 274
Query: 181 VYATLALVWLIREKK 195
L +++ +
Sbjct: 275 SKLIYELSEKVQKFQ 289
>gi|33596994|ref|NP_884637.1| putative exonuclease [Bordetella parapertussis 12822]
gi|33566445|emb|CAE37698.1| putative exonuclease [Bordetella parapertussis]
Length = 247
Score = 56.7 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G VA +FA VRV +IE + D +P P +TGIT
Sbjct: 80 FVVADLETTGLSVATCEILEFAAVRV-SACGQIEREFTQVVR-TDGRVP-PFISRLTGIT 136
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ RDGV + F ++N FD + + R +
Sbjct: 137 QAEVERDGVPVRQAFGDFLD-FIEGGPLF--FHNASFDRRFLQAAADRTGLP---FEAQT 190
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+M A A WP S KL LA G H A ADV T
Sbjct: 191 HC------TLMLARQA-------WPE----LPSHKLNVLARHLGASEPT-HRALADVRTT 232
>gi|310828723|ref|YP_003961080.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
gi|308740457|gb|ADO38117.1| DNA polymerase III subunit epsilon [Eubacterium limosum KIST612]
Length = 461
Score = 56.7 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 37/192 (19%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++V+ D ET G D + + + ++ D I+S + F KP + +P + I
Sbjct: 143 PKNYVMVDVETTGLDPSNNEIIEIGALKITDG--NVIDSFKTF-VKPINS-IPS-KITSI 197
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGIT + + F + I+GYN + FD + + +Y+NF
Sbjct: 198 TGITNNMVADAPS-----IKTVLMEFKSFLSDNYIVGYNVL-FDIKFLHDSYYKNF---- 247
Query: 119 RWSWDNGNSRW---DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
GN W D +DV+R A + KL + I+ H
Sbjct: 248 ------GNCDWLSHDYIDVLRFCR----------KYFKSAPNHKLTTMIDYLNIDVKEHH 291
Query: 176 DAKADVYATLAL 187
A AD YATL
Sbjct: 292 RALADCYATLEC 303
>gi|302554712|ref|ZP_07307054.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
gi|302472330|gb|EFL35423.1| DNA polymerase III [Streptomyces viridochromogenes DSM 40736]
Length = 623
Score = 56.7 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 33/189 (17%)
Query: 6 VIYDY-----ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+D+ ET G DR A + +D + + DP V I
Sbjct: 28 YFHDWALVDVETSGLRPGRDRVLSLAILTLDARGNQTGEFATL---LNPGC--DPGPVHI 82
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G+TP + E E + ++ S ++ +N +FD + + F ++
Sbjct: 83 HGLTPARLAGAPTFE-EIAPQVGALLS--GRVLVAHNA-QFDYDFLAHEF------AHVR 132
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
SW + R L + R + + +PD KL LA G+ AHDA+ D
Sbjct: 133 SWVPVSRRLCTLALNRLVGSATPD-------------LKLGTLAAHYGVRQERAHDAQDD 179
Query: 181 VYATLALVW 189
V ++
Sbjct: 180 VRVLSGILR 188
>gi|325285402|ref|YP_004261192.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
7489]
gi|324320856|gb|ADY28321.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga lytica DSM
7489]
Length = 258
Score = 56.7 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 41/205 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +D ET G +VA DR + + ++V + ++ + P +PD E V +
Sbjct: 5 LTRPICFFDLETTGINVAKDRVVEISILKVYPNGN--KESKTWLVNPEMH-IPD-EVVAV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-YNNIRFDDYYSRNIFYRNFYDSYR 119
GI+ E F++ + +++ C +G YN+ RFD R D
Sbjct: 61 HGIS----NEKVANEPTFAQLSKEIYAMIKDCDLGGYNSDRFDIPLLAEEMLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN------GIEHVN 173
+D+ + + D FK++ L E N
Sbjct: 114 ---------FDMKNTVSV--------------DVQTIFFKMEKRTLEAAYKFYCNKELTN 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A AD AT ++ ++ P+L
Sbjct: 151 AHSAAADTNATFEVLKSQLDRYPEL 175
>gi|262047863|ref|ZP_06020812.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
gi|312976690|ref|ZP_07788439.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
gi|260571856|gb|EEX28428.1| DNA polymerase [Lactobacillus crispatus MV-3A-US]
gi|310896018|gb|EFQ45083.1| DNA polymerase III [Lactobacillus crispatus CTV-05]
Length = 318
Score = 56.7 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 28/187 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
++ + D ET G DR + GV+V R + ++ ++ +P A
Sbjct: 31 TNYTMLDIETTGLYPYRDRITELGGVKV-RNGQIVDQYTNLVKFSKNNSVP---AFITKL 86
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT ++ ++G+ + R +F IIGYN + FD + + +
Sbjct: 87 NGITEEQIGKEGIPAEQAIREFREFIGD--DVIIGYN-VNFDLNFL-YDLSQKYGLPVL- 141
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + R Y P L + A GI V AH D
Sbjct: 142 ----DNDYVDVLRLARTYY---------PRERHNR---LLDCMQRA-GIAQVEAHHGLQD 184
Query: 181 VYATLAL 187
T+ +
Sbjct: 185 SLDTIKV 191
>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
Length = 1441
Score = 56.7 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 45/220 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ F+I+D ET G D + +++ I+S + +P+ + V +TG
Sbjct: 424 DEFIIFDIETTGLSSKNDEITEIGAIKIKNN-RIIDSFSTLIN--PERSIPE-KIVELTG 479
Query: 63 ITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I+ +E +F I C + +N FD F R+ + Y
Sbjct: 480 ISDDMVKDQPTIEVVLPQFLDFI-------GDCPVVAHNSDFD-----TGFIRDKAERYE 527
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
S+DN +D ++ A PD + +L +A I N H A
Sbjct: 528 LSFDNI-----AIDTLKLARALLPDLKK----------HRLNVIAKELNISLENHHRAVD 572
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
D AT + F + NK +R L DI +
Sbjct: 573 DAKATAEI-----------FIKFVEMMNKKDIRTLKDIND 601
>gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
23-P]
gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
23-P]
Length = 1445
Score = 56.7 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 69/198 (34%), Gaps = 38/198 (19%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D+ I F KP +P
Sbjct: 2 YLIFDTETTGLPKTWNAPITNTENWPRCVQIAWQLHDKMGNII-EHNDFLIKPDGYNIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ + A G+ AE ++ S T I+G N+ FD FYR
Sbjct: 61 -DAERIHGISTELAEEQGISLAEGLLLFNEVLSK-TTFIVG-QNLNFDLNIMGCEFYRLG 117
Query: 115 ----YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--- 167
+LD A Q P G FKL L +
Sbjct: 118 VEDKMTPLP-----------ILDTCTEKTAL---MCQIPGGRGGK--FKLPTLTELHQHL 161
Query: 168 -GIEHVNAHDAKADVYAT 184
G +AH+A ADV AT
Sbjct: 162 FGAGFGDAHNATADVEAT 179
>gi|15887364|ref|NP_353045.1| DNA polymerase III subunit epsilon [Agrobacterium tumefaciens str.
C58]
gi|15154863|gb|AAK85830.1| DNA polymerase III, epsilon chain [Agrobacterium tumefaciens str.
C58]
Length = 232
Score = 56.7 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G + LDR + G+ + + T + P +D P+A+ + GIT
Sbjct: 4 IIFDTETTGLESKLDRVIEIGGIELINHF-PTGRTLHLYISP-EDRKVHPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ L+D AE +I +FF + +N FD + F R +
Sbjct: 61 DEFLKDKPKFAEVIDQIREFFDGARWVA-----HNATFDMGFINAEFARLGIEPVSAE 113
>gi|308174031|ref|YP_003920736.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
DSM 7]
gi|307606895|emb|CBI43266.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
DSM 7]
gi|328552843|gb|AEB23335.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus amyloliquefaciens TA208]
gi|328912360|gb|AEB63956.1| damage inducible ATP-dependent helicase [Bacillus amyloliquefaciens
LL3]
Length = 928
Score = 56.7 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 62/186 (33%), Gaps = 38/186 (20%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G D+ Q A V ++ +I + P D P E + TGI
Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNQDIPPFIEQL--TGI 61
Query: 64 TPQKALRDGVVEAEF-----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ G+VE E + I + +N I FD + R+ Y+
Sbjct: 62 S------TGMVENELPFEAVAEEIFHLLD--GAYFVAHN-IHFDLGFVRHELSEAGYELT 112
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+LD + P G +KL +L I H H A
Sbjct: 113 DCE---------VLDTVELSRIVFP----------GFEGYKLGELCAELNIVHDRPHRAD 153
Query: 179 ADVYAT 184
+D T
Sbjct: 154 SDAEVT 159
>gi|33600836|ref|NP_888396.1| putative exonuclease [Bordetella bronchiseptica RB50]
gi|33568436|emb|CAE32348.1| putative exonuclease [Bordetella bronchiseptica RB50]
Length = 247
Score = 56.7 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G VA +FA VRV +IE + D +P P +TGIT
Sbjct: 80 FVVADLETTGLSVATCEILEFAAVRV-SACGQIEREFTQVVR-TDGRVP-PFISRLTGIT 136
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ RDGV + F ++N FD + + R +
Sbjct: 137 QAEVERDGVPVRQAFGDFLD-FIEGGPLF--FHNASFDRRFLQAAADRTGLP---FEAQT 190
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+M A A WP S KL LA G H A ADV T
Sbjct: 191 HC------TLMLARQA-------WPE----LPSHKLNVLARHLGASEPT-HRALADVRTT 232
>gi|237756693|ref|ZP_04585197.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691145|gb|EEP60249.1| DNA polymerase III PolC-type [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 205
Score = 56.3 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 40/221 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F + D ET G + + A ++V+ I KP+ ++P+ +TGI
Sbjct: 10 TFTVVDLETTGLNPKTSEIIEIAAIKVEG--NVITEKFHTLVKPSIGFIPE-HITKLTGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSYRW 120
T + +E F H N+ II +N +I F + S + + +
Sbjct: 67 TNPLVIDKPKIEQVFP---HFLEFTKNSIIIAHNAKFDISFLNEASFQLTGKLIQNPVIC 123
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ + PD S L +LA I + H A AD
Sbjct: 124 T-------------LVLANRLFPDL----------KSKSLTNLAYHFNIPYHRKHRALAD 160
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
T L F N++ LI + N
Sbjct: 161 AEVTYELFKK--------FVEYLQNYKVNKVIDLIRLSNGK 193
>gi|288556130|ref|YP_003428065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus pseudofirmus OF4]
gi|288547290|gb|ADC51173.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus pseudofirmus OF4]
Length = 940
Score = 56.3 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 46/227 (20%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M + F++ D ET G VA DR Q V ++ E IE F + P
Sbjct: 1 MNDRFIVVDVETTGHSVAKGDRIIQIGAVVIENG-EIIERFASF---VNPEVEIPPFIEE 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY--NNIRFDDYYSRNIFYRNFYDS 117
+TGI Q + E + + F +G+ +N+ FD + +N F
Sbjct: 57 LTGIN-QAMVEHAPTFKELAVELLPLFE-----NVGFVAHNVPFDLSFLKNQF------E 104
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D +++ R + P + S+KL LA + G+ H H A
Sbjct: 105 LIGEKFPKMKCYDTVELSR---------MLLPKEE----SYKLGHLAFSLGLSHDRPHQA 151
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
+D T + F YL NK + L+ ++ + P+V
Sbjct: 152 DSDAEVTAEI-----------FLYLL---NKLKGLPLLTLEQLIPIV 184
>gi|83590002|ref|YP_430011.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
39073]
gi|83572916|gb|ABC19468.1| DNA polymerase III, epsilon subunit [Moorella thermoacetica ATCC
39073]
Length = 921
Score = 56.3 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 40/206 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+ +V+ D ET G D A DR + A VR++ + P P A+
Sbjct: 2 LPQTYVVLDVETTGLDPARDRIIEIAAVRLEGG-NITRQFQTL---VNPGR-PIPPAIER 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI+ +R+ E + F +G+N FD + ++
Sbjct: 57 LTGIS-DAMVREAPPLPEVLPGLLDLFRD--AIPVGHNG-TFDLAFLNQALGHGWHSP-- 110
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
LLD + P + S +L ++ +E H A
Sbjct: 111 -----------LLDTLALSRILFP-CL---------ASHRLDYMSKYLTLEATGHHRALD 149
Query: 180 DVYATLALVWLIREKKPKLFEYLYDY 205
DV T L+ L++ +
Sbjct: 150 DVLTT---ARLLEN----LWQATLEL 168
>gi|313205456|ref|YP_004044113.1| exonuclease RNAse t and DNA polymerase iii [Paludibacter
propionicigenes WB4]
gi|312444772|gb|ADQ81128.1| Exonuclease RNase T and DNA polymerase III [Paludibacter
propionicigenes WB4]
Length = 189
Score = 56.3 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 31/193 (16%)
Query: 5 FVIYDYETFGR-----DVALD-----RPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYL 52
++ +D ET G D R Q A + D KI + KP +
Sbjct: 2 YLFFDTETTGLPRDWKAPVSDLNNWPRLVQLAYLFFDSNGNKIAGGDFII---KPEGFTI 58
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
P EA I GIT ++A ++G + R Q ++ +N + FD+ F R
Sbjct: 59 PT-EASRIHGITTERANQEGKP-IQTVLRDFQSMINEAQYLVAHN-MSFDEKIVGAEFLR 115
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPS-RDDGATSFKLQDLALANGIEH 171
N + + P G +WP + FK
Sbjct: 116 NNMPDSIAPKRKICT---MQSTTNFCAINGPYGYKWPKLSELHYKLFKTDF--------- 163
Query: 172 VNAHDAKADVYAT 184
AH+A AD++AT
Sbjct: 164 EEAHNAAADIHAT 176
>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
Length = 1448
Score = 56.3 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 29/182 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G ++ + A V++ + EKI E F P + +
Sbjct: 427 TYVVFDTETTGLSAQYNKVIELAAVKM-KDGEKIGEFEEF---IDPG---HPLSQTTINL 479
Query: 64 TPQ-KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T A+ G E ++ + F I+G+N FD + + R+ + W
Sbjct: 480 THITDAMVRGSKTEEEVFKLFREFCK-GCIIVGHNA-TFDVDFMNTGYLRHGMPEIKEPW 537
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + R +Y+ F L LA ++ + H A D
Sbjct: 538 ------VDTLPLARILYS-------------DMKRFTLDTLAKRLKVDLEHHHRAIYDAE 578
Query: 183 AT 184
AT
Sbjct: 579 AT 580
>gi|218461621|ref|ZP_03501712.1| DNA polymerase III subunit epsilon [Rhizobium etli Kim 5]
Length = 115
Score = 56.3 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D +DR + G+ + + +T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINPGDQKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ L+D AE + I FF +N FD + F R
Sbjct: 61 DEFLKDKKAFAEVAEEILAFFGDAKWIA---HNATFDMGFINAEFARIGLPPIL 111
>gi|163757474|ref|ZP_02164563.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
gi|162284976|gb|EDQ35258.1| DNA polymerase III subunit epsilon [Hoeflea phototrophica DFL-43]
Length = 233
Score = 56.3 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 61/179 (34%), Gaps = 27/179 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G D +DR + V ++ Q+ + F P + P+A+ + GIT
Sbjct: 4 IVFDTETTGLDNKVDRIIEIGCVELENQF-PTGRSLHLFINPDGRAV-HPDALAVHGITD 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
Q V A+ + I FF + +N FD + F R +
Sbjct: 62 QFLADKPVF-ADLADEIAAFFDGAHYVA---HNANFDMGFLNAEFDRIGLPPV-----DP 112
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVY 182
D L + R + P+ L L GI H H A D
Sbjct: 113 GLVIDTLALARRRHPMGPNS--------------LDALCRRYGIDNAHRTKHGALLDAE 157
>gi|150007459|ref|YP_001302202.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
8503]
gi|298375435|ref|ZP_06985392.1| exonuclease [Bacteroides sp. 3_1_19]
gi|301310540|ref|ZP_07216479.1| exonuclease [Bacteroides sp. 20_3]
gi|149935883|gb|ABR42580.1| hypothetical protein BDI_0810 [Parabacteroides distasonis ATCC
8503]
gi|298267935|gb|EFI09591.1| exonuclease [Bacteroides sp. 3_1_19]
gi|300832114|gb|EFK62745.1| exonuclease [Bacteroides sp. 20_3]
Length = 192
Score = 56.3 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAG-VRVD------RQWEKIESTEVFFCKPADDYLPDPEA 57
+ +D ET G + Q +G + +D + + C+ + EA
Sbjct: 3 LLFFDLETTGIKYWRNGVHQISGEIVIDGVTKESFNFNVCPHPQ---CEIEE------EA 53
Query: 58 VFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+ I ++ ++ E S+ + +F ++GYNN FD+++ +
Sbjct: 54 LRICNVSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAF 112
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F +N D+Y +SW NS D++ V+ + + T FK + +A A GI
Sbjct: 113 FVQNG-DNYFYSWFWVNSI-DVM-VLSTQHLMR--------KRHEMTDFKQETVARALGI 161
Query: 170 EHVNA--HDAKADVYATLALVWLIRE 193
+ +A HDA D+ T + I
Sbjct: 162 QIDSAKLHDASYDIQLTKEIYNRISS 187
>gi|320332661|ref|YP_004169372.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
maricopensis DSM 21211]
gi|319753950|gb|ADV65707.1| Exonuclease RNase T and DNA polymerase III [Deinococcus
maricopensis DSM 21211]
Length = 183
Score = 56.3 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 63/194 (32%), Gaps = 23/194 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ D ET G D A+ P G+ + +I + D Y DPEA+ + GI
Sbjct: 6 IIFLDTETGGMDPAV-HPLLTVGLVTLQD-GEITRPLHLRVR-HDTYTVDPEAMRVNGID 62
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ AE + I + + ++G +N FD F R +
Sbjct: 63 LLTHHDEAHPPAEVAAAIRAYAAEVGRVMLGGHNFAFD-----LGFLRTLLPDRSRVFR- 116
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
D A + + L LA GIE+ AHDA D T
Sbjct: 117 -CGHVD--TKTTAQFLIHAGILP------KKVGTALDQLAKHFGIEY-QAHDALEDARTT 166
Query: 185 L----ALVWLIREK 194
+ L+R
Sbjct: 167 AIVYNEFLKLVRAA 180
>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
Length = 1433
Score = 56.3 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 40/222 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+V++D ET G D +F ++ + I++ FF KP + + IT
Sbjct: 397 NETYVVFDLETTGLSPIFDDIIEFGAQKI-LNGKVIDT-LQFFVKPNKEI--SEKITLIT 452
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI Q + + E E ++I +F +T + +N FD NF +
Sbjct: 453 GIKNQDV-ENAISEKEALKKILEFMGD-HTVVA--HNATFD---------MNFINEKIEK 499
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKA 179
++ S ++D + P+ + F L++LA +GI AH A
Sbjct: 500 YNFQESNLQIIDTLVVSKIIEPEAKK----------FSLENLASRSGIIYNSTEAHRADY 549
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
D L ++ + ++ DI N
Sbjct: 550 DADV---LAK--------VWNLYIQKLSDMNVKYFDDIYNFK 580
>gi|237785374|ref|YP_002906079.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758286|gb|ACR17536.1| hypothetical protein ckrop_0779 [Corynebacterium kroppenstedtii DSM
44385]
Length = 555
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 40/190 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA---DDYLPDPEAV 58
F+ +D ET + A QF GV V + ++ + + C+P D+ P A
Sbjct: 220 PPSFIAFDVET--ANEANGSICQF-GVVVYHEGKE-AESHTWLCQPPSAWPDFTPATTA- 274
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I GITP K + ++ N I+ +N +FD R D+
Sbjct: 275 -IHGITPDKVANEPSCHDRL-EQLAALLRKENLPIVAHNA-KFDMVALR--------DAA 323
Query: 119 RWSWDNGNSRWDLLDVMRAI-----YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
R + D+ + A A P+ ++KL +A + G E +
Sbjct: 324 RAE------KVDIPHITFACTYLLARALHPEL----------PNYKLTTVAQSAGSEAFH 367
Query: 174 AHDAKADVYA 183
HDA AD A
Sbjct: 368 HHDALADARA 377
>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
33624]
gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
33624]
Length = 1484
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 67/194 (34%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGR----------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G R Q A D + + + F P +P
Sbjct: 2 YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDEK-GALLEHKDFLIIPDGYTIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ + A GV + + S I+G NI FD + FYR
Sbjct: 61 -DAERIHGISTELATEQGVSIHKVFEEFEKALSKTQ-YIVG-QNIGFDIHIMGAEFYRYG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173
+ D L ++ + + + P G FK +L +
Sbjct: 118 VSTVL----------DKLPILDTCSELTAELCKIPGGRAGK--FKYPNLTELHEFLFGTP 165
Query: 174 ---AHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FAEAHNATADVEAT 179
>gi|89898728|ref|YP_515838.1| DNA polymerase III subunit epsilon [Chlamydophila felis Fe/C-56]
gi|89332100|dbj|BAE81693.1| DNA polymerase III epsilon chain [Chlamydophila felis Fe/C-56]
Length = 249
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 30/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D E G DV DR +FA R I+S E D + E+ I I+
Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETL---INPDRVISAESQRIHRIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
L+D +E +I Q F I+G+ ++ FD +
Sbjct: 65 -DAMLKDQPRISEVFPKI-QAFLKEGDYIVGH-SVGFDLQVL--------TQEAERIGET 113
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S++ ++D +R Y SP+ L+ LA+ + + H A DV
Sbjct: 114 FLSKYCIIDTLRLAKEYGDSPNN-------------SLEALAVHFNVPYDGNHRAMKDVE 160
Query: 183 ATLALVWLIREK 194
+ + ++
Sbjct: 161 ININIFKHFCKR 172
>gi|15614254|ref|NP_242557.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus halodurans C-125]
gi|10174308|dbj|BAB05410.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
Length = 942
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 68/190 (35%), Gaps = 38/190 (20%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKP--ADDYLPDP 55
M N FV+ D ET G+ VA DR + V IE E FC + +P P
Sbjct: 1 MNNRFVVIDIETTGQSVAQGDRIIEIGAV-------VIEDEEAVESFCTLVNPERSIP-P 52
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNF 114
+TGI+ + G F + I + S+ + +N + FD + + +
Sbjct: 53 FIEELTGIS--DEMVKGAP--TFHQCIPELMSMLEGGVFVAHN-VHFDLSFLQKLLEHEG 107
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
Y ++D + P S+KL L G+EH N
Sbjct: 108 YGPLL---------VPIIDTVELSRILLPTE----------ESYKLSALTEQLGLEHENP 148
Query: 175 HDAKADVYAT 184
H A +D T
Sbjct: 149 HRADSDAKVT 158
>gi|45358454|ref|NP_988011.1| exonuclease [Methanococcus maripaludis S2]
gi|44921212|emb|CAF30447.1| Exonuclease [Methanococcus maripaludis S2]
Length = 191
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 16/182 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V D ET G + AQ + + D + ++ D A + G+T
Sbjct: 2 YVFLDTETTGLHPG--QIAQLSYLVTDEDLNLKKVFNQYYS--VDHM--SRSAAKVHGLT 55
Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ L +G+ + + + IIG+N I FD + + F R
Sbjct: 56 VEILDELSNGMTFEDTVDEVRDDLED--SVIIGHN-ISFDIRFLKAEFER--LGPEYVPK 110
Query: 123 DNGNSRWDLLDVMRA---IYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D + + + + P ++ + + L+ A G V HDA+
Sbjct: 111 DKFCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPNEGLEFTKKAYGCSDVGFHDARY 170
Query: 180 DV 181
D
Sbjct: 171 DT 172
>gi|316985472|gb|EFV64419.1| exonuclease family protein [Neisseria meningitidis H44/76]
gi|325139523|gb|EGC62063.1| oligoribonuclease [Neisseria meningitidis CU385]
gi|325143758|gb|EGC66075.1| oligoribonuclease [Neisseria meningitidis M01-240013]
Length = 203
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +DD L D
Sbjct: 21 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTAT 80
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 81 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 111
>gi|297529654|ref|YP_003670929.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
C56-T3]
gi|297252906|gb|ADI26352.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
C56-T3]
Length = 909
Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 38/199 (19%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M FVI D ET G DR Q V+ +E FF + P +F
Sbjct: 1 MATRFVIIDLETTGNGPKKGDRIIQLGMAVVEDGL-IVERFASFF---NPE---QPIPLF 53
Query: 60 I---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I T I ++ + + A+ + I + +N + FD + + R +
Sbjct: 54 IQQLTNIN-EQMVEGAPLFADKAGEIAALMH--GAYFVAHN-VDFDLPFLQAELERAGWP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +D + I P+ + S+KL DLA G+ H H
Sbjct: 110 PFA---------GPTIDTVELAR------IVLPTAE----SYKLGDLARQLGLHHDRPHQ 150
Query: 177 AKADVYAT----LALVWLI 191
A +D T +AL+ +
Sbjct: 151 ADSDAEVTAKLFIALLKRL 169
>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
Length = 1365
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 67/206 (32%), Gaps = 54/206 (26%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEA 57
FV++D ET G DR + RV+ + ++ + E+ PE
Sbjct: 347 ESFVVFDLETTGLSRYKDRITEIGACRVEGGKITEIYNELVNPEMVI----------PEK 396
Query: 58 VF-ITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+ ITGIT + +E F F ++ ++G N FD + R +R
Sbjct: 397 IIEITGITNEMVKDCPTIEEVLPGFLD-----FCK-DSILVG-QNTDFDVGFVRENCHRM 449
Query: 114 FYD--SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
D LD + A D F L +A I
Sbjct: 450 GLDFNPIY------------LDTLPMARALFSD----------MKKFSLDKIARKLEIPA 487
Query: 172 VNAHDAKADVYAT----LALVWLIRE 193
N H A D AT + + +I E
Sbjct: 488 FNHHRASDDARATAQIFIKMFKMIME 513
>gi|227823864|ref|YP_002827837.1| DNA polymerase III subunit epsilon [Sinorhizobium fredii NGR234]
gi|227342866|gb|ACP27084.1| DNA polymerase III, epsilon subunit [Sinorhizobium fredii NGR234]
Length = 232
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + GV ++ Q+ T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDSREDRVIEIGGVELENQF-PTGRTIHIYINPGDRKV-HPDALAVHGIT- 60
Query: 66 QKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
L+D A+ I FF + +N FD + F R
Sbjct: 61 DDFLKDKPSFADVVEEIVDFFGDARWVA-----HNATFDIGFINAEFDRLGLPPV 110
>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
Length = 1433
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D E ++ + +T + +N FD + F + D
Sbjct: 472 IT-DDMLTDAPEVGEVFKKFQAWMGD-HTLVA--HNASFDMGFLNVGFKKCGLD------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + PD + +L L IE H A D
Sbjct: 522 KPKNP---VIDTLELARFLFPD----------MKNHRLNTLCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT L +++E K FEY
Sbjct: 569 ATGYLLAKMLKEVIEKGFEY 588
>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
Length = 906
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 65/183 (35%), Gaps = 19/183 (10%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
I+D ET G DV D Q A V+V S + +D +P+ +
Sbjct: 504 NETITIFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDHEIPEMLGDIVN 562
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I ++ + + E +R + T ++G+N +D + N R
Sbjct: 563 PIIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNA-DYDIHILANNLQREMP-----E 614
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N D D + I P G +KL+ L +E N+H A ADV
Sbjct: 615 TALPNELSDYFDSLHLIRLLRP----------GLRQYKLKYLLEVLHLEGENSHLADADV 664
Query: 182 YAT 184
AT
Sbjct: 665 NAT 667
>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 1415
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 34/217 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAV-FI 60
N +V++D ET G D+ + V+ VD I F + + + PE V +
Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKIVDG---IITE---RFSQLINPQMLIPEKVQEL 452
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T IT + +E E + + + F ++ +N +FD + R +F N D
Sbjct: 453 TRITNALVENEPTIE-EVAPKFYDFIKDS---VLVAHNAKFDTAFIRRVFKENDLDFI-- 506
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D L RA +D F L L G+ V AH A D
Sbjct: 507 -----NPILDTLSFARAT-----------VKDTKK--FNLATLCKKFGVSLVGAHRAVND 548
Query: 181 VYATLAL-VWLIREK-KPKLFEYLYDYRNKNQLRKLI 215
AT L + LI + PK ++ K+Q+ I
Sbjct: 549 AEATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEI 585
>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus lacrimalis 315-B]
gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus lacrimalis 315-B]
Length = 1415
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 82/217 (37%), Gaps = 34/217 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAV-FI 60
N +V++D ET G D+ + V+ VD I F + + + PE V +
Sbjct: 399 NTYVVFDIETTGLSPIRDKITEIGAVKIVDG---IITE---RFSQLINPQMLIPEKVQEL 452
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T IT + +E E + + + F ++ +N +FD + R +F N D
Sbjct: 453 TRITNALVENEPTIE-EVAPKFYDFIKDS---VLVAHNAKFDTAFIRRVFKENDLDFI-- 506
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D L RA +D F L L G+ V AH A D
Sbjct: 507 -----NPILDTLSFARAT-----------VKDTKK--FNLATLCKKFGVSLVGAHRAVND 548
Query: 181 VYATLAL-VWLIREK-KPKLFEYLYDYRNKNQLRKLI 215
AT L + LI + PK ++ K+Q+ I
Sbjct: 549 AEATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEI 585
>gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823]
gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823]
Length = 1463
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 69/200 (34%), Gaps = 42/200 (21%)
Query: 5 FVIYDYETFGRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
F+I+D ET G R Q A D IE+ + +P +P
Sbjct: 2 FLIFDTETTGL-PRDWNAPLTDLDNWPRAIQIAWQLHDELGNLIEAKDYLI-RPDGFDIP 59
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-----DYYSRN 108
+A I GI+ + AL G + ++ + ++G NI FD + R
Sbjct: 60 Y-DAERIHGISTELALEQGQDLEDVIAEFNEVL-RKSQFVVG-QNIGFDLNIMGAEFLRT 116
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN- 167
N +D L V+ + + + P G FKL L +
Sbjct: 117 QVATNMHD---------------LPVLDTCTEVTANLCKIPGGRGGK--FKLPTLTELHS 159
Query: 168 ---GIEHVNAHDAKADVYAT 184
+ AH+A ADV AT
Sbjct: 160 FLFNVPFGEAHNATADVEAT 179
>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom
phytoplasma]
Length = 1492
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 48/237 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+++V+ D ET G DR A V++ + + IE + P D +T
Sbjct: 402 NHNYVVLDIETTGFSKTRDRIISIAAVKI-QNGKIIEYFDELI-NPGKDIKISNLIQRLT 459
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRNIF-----Y 111
I+ + L + I F PN ++ +N FD + + F Y
Sbjct: 460 NISDEILLNKPH-----IKEILSKFLDFIRDCPNCVLVAHNA-SFDIEFLQETFKNIGLY 513
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
++D + + +++ S + SFK++ +
Sbjct: 514 WPLLP--------------VIDTLTLAQKYFNKILKYFSLEKIVKSFKIKLDSE------ 553
Query: 172 VNAHDAKADVYAT--LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
H+A D AT + L L + + K+F + L+ +DI+ P HV
Sbjct: 554 GQYHNALFDARATALIFLEMLEQLEAQKIFNFY-------DLQGSLDIKFERPY-HV 602
>gi|15677698|ref|NP_274859.1| oligoribonuclease [Neisseria meningitidis MC58]
gi|11133786|sp|Q9JXW1|ORN_NEIMB RecName: Full=Oligoribonuclease
gi|7227120|gb|AAF42197.1| oligoribonuclease [Neisseria meningitidis MC58]
gi|325133508|gb|EGC56171.1| oligoribonuclease [Neisseria meningitidis M13399]
gi|325200921|gb|ADY96376.1| oligoribonuclease [Neisseria meningitidis H44/76]
gi|325206775|gb|ADZ02228.1| oligoribonuclease [Neisseria meningitidis M04-240196]
Length = 187
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +DD L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily
[Capnocytophaga sputigena Capno]
gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily
[Capnocytophaga sputigena Capno]
Length = 1485
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D R Q A D +W + + F KP +P
Sbjct: 2 YLIFDTETTGLPRRWDAPLTDSDNWPRAVQIAWQLHD-EWGALIEHQDFLIKPDGFDVPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A + GI+ Q A GV AE + ++ S ++G NI FD F+R
Sbjct: 61 -DAEKVHGISTQLAETQGVPIAEVFKAFNEALSKAK-YVVG-QNIGFDINIMGAEFHRYG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+S + V+ + + Q G +KL L + G+
Sbjct: 118 VESPLTQ----------MPVIDTCTETTANLCQIAGGKGGR--YKLPTLTELHSFLFGVP 165
Query: 171 HVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FAEAHNATADVEAT 179
>gi|193212627|ref|YP_001998580.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
gi|193086104|gb|ACF11380.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
8327]
Length = 232
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 74/210 (35%), Gaps = 28/210 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVIYD ET G D DR V + I+ + F + + +AV + G+
Sbjct: 45 FVIYDTETTGFDFRHDRIISIGAVGTKGE--VIDIADSFEVLLRQEVCSERDAVTVHGLL 102
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
++ + G+ E+E R + N I+ ++ FD + R F
Sbjct: 103 -KRDIDSGLEESEAVCRFLDYLG--NAVIVAHHA-DFDIAMINQVLSRRFGMRLF----- 153
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N D A +A + + + ++L +L GI + H A D Y T
Sbjct: 154 -NEALD-----TASFAKRLEKGPYYNLAHKGGEYRLDNLCARYGIRLYDRHTAPGDAYLT 207
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
+LF+ L K + L
Sbjct: 208 -----------AQLFQRLLALGRKAGIDTL 226
>gi|188995649|ref|YP_001929901.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
ATCC 33277]
gi|188595329|dbj|BAG34304.1| putative DNA polymerase III epsilon chain [Porphyromonas gingivalis
ATCC 33277]
Length = 259
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 31/191 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N + +D ET G D+ DR + + ++V S E + + PE+ I
Sbjct: 5 LKNPLIFFDLETTGVDLVRDRIVEISILKVMPD----GSEECKTRRINPERSIPPESTAI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + ++D R + + + + G+N+ RFD F R D
Sbjct: 61 HGIT-DEDVKDCPP----FRSVAKSLAQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDID 115
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
L+DV + P ++ +R + NAH A+
Sbjct: 116 LRHRK-------LIDVQTIFHKMEPRTLEAATRFYCNRTL-------------ENAHSAE 155
Query: 179 ADVYATLALVW 189
AD AT +
Sbjct: 156 ADTRATYDVFK 166
>gi|150402066|ref|YP_001329360.1| exonuclease RNase T and DNA polymerase III [Methanococcus
maripaludis C7]
gi|150033096|gb|ABR65209.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
maripaludis C7]
Length = 190
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 16/182 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V D ET G + AQ + + D + ++ + D + A I G+T
Sbjct: 2 YVFLDTETTGLHPG--QIAQLSYLVTDEDLNLKKVFNQYY---SVDRM-SRSAAKIHGLT 55
Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ L +G+ + + + IIG+N I FD + + F R
Sbjct: 56 MEILDELSNGMTFEDTVDEVRDDLED--SIIIGHN-ISFDIRFLKTEFER--LGPEYVPK 110
Query: 123 DNGNSRWDLLDVMRA---IYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D + + + + P ++ + L+ A G V HDA+
Sbjct: 111 DKFCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKEAYGCSDVGFHDARY 170
Query: 180 DV 181
D
Sbjct: 171 DT 172
>gi|301166002|emb|CBW25576.1| putative DNA polymerase III PolC-type alpha subunit [Bacteriovorax
marinus SJ]
Length = 295
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/302 (16%), Positives = 100/302 (33%), Gaps = 59/302 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRV----DRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G +D+ + + ++V + ++++ ++ K D I GIT
Sbjct: 24 DLETTGLSPLIDKVIELSAIKVTPYGEEVFDELIDPKIEIPKFTID---------IHGIT 74
Query: 65 PQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
++ EF I + + +N +FD + ++
Sbjct: 75 NDMVQGKRTLDKVLPEFINFI-------GSLPLVAHNAKFDLGFIVFGMHQIGLP--LHE 125
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
S + YA G+T+FKL L I N H A D
Sbjct: 126 SHVYCSC------KFSRYALR-----------GSTNFKLSTLTTELEIPLENHHRALDDA 168
Query: 182 YATLAL----VWLIREKKPKLFE----YLYDYRNKN-------QLRKLIDIQNMTPLVHV 226
A L + + + ++ K+ + +K +L+ L D ++ +
Sbjct: 169 IACLKVYERGLRVFKKPDRKILNEGHLFKLKDFDKQDDFEIPKKLKPLQDKVKDQEMIEI 228
Query: 227 SGMFGASRSNTALIAPVAWHP-RYKDSVIGCNLSGDMRVFQDL-DSVQLAKRLFTSHDEL 284
G+ ++ I P+++ P + + L DM L +L + +EL
Sbjct: 229 KYRGGSLKNQFRPIRPISFLPMPQGNMLYAHCLVSDMYKSFSLKKIAELRELSDEQKNEL 288
Query: 285 KG 286
K
Sbjct: 289 KA 290
>gi|116333503|ref|YP_795030.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
gi|116098850|gb|ABJ63999.1| Rad3-related DNA helicase [Lactobacillus brevis ATCC 367]
Length = 948
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/223 (23%), Positives = 83/223 (37%), Gaps = 50/223 (22%)
Query: 9 DYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEAV-FITGI 63
D ET G DR Q V V + I E D P P A+ +TGI
Sbjct: 11 DIETTGTSVTDGDRIIQIGCVFVQHN-QVINHFET-------DVNPLKEIPAAISRLTGI 62
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T ++ + + + + ++ + NT + +N + FD + R Y + +
Sbjct: 63 TNKRVRHAPLFD-DVAGTLYSLLT--NTVFVAHN-VNFDLPFINAELERVGYPALPIA-- 116
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D + P TSF+L+DL+ IEH N H A +D A
Sbjct: 117 -------AVDTVSLSQILLPTA----------TSFRLRDLSRLFNIEHDNPHSADSDASA 159
Query: 184 TLALVWLIREKKPKLFEYLY-DYRNKN--QLRKLIDIQNMTPL 223
T LF +L+ R L+++ID+Q PL
Sbjct: 160 TAE-----------LFIFLFRRLRALPMVTLQRMIDLQADLPL 191
>gi|52080748|ref|YP_079539.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus licheniformis ATCC 14580]
gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus licheniformis ATCC 14580]
gi|319645294|ref|ZP_07999527.1| DinG protein [Bacillus sp. BT1B_CT2]
gi|52003959|gb|AAU23901.1| ATP-dependent helicase [Bacillus licheniformis ATCC 14580]
gi|52348621|gb|AAU41255.1| DinG [Bacillus licheniformis ATCC 14580]
gi|317393103|gb|EFV73897.1| DinG protein [Bacillus sp. BT1B_CT2]
Length = 930
Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 33/188 (17%)
Query: 1 MTNH-FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M N +V+ D ET G DR Q A V ++ +I + P P P A
Sbjct: 1 MNNQRYVVIDVETTGNSPKKGDRIIQIAAVVIENG--QITERFSKYVNPNQ---PIP-AF 54
Query: 59 F--ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ + + + + I + +C I +N I FD + ++ +
Sbjct: 55 IEQLTGISNEMVENE-EPFSAIAEDIFELLHD--SCFIAHN-IHFDLAFVKHELQLAGFG 110
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S +LD + P G +KL +L+ I H N H
Sbjct: 111 EIECS---------VLDTVELSRIVFP----------GFDGYKLTELSEELQIRHENPHR 151
Query: 177 AKADVYAT 184
A +D T
Sbjct: 152 ADSDAEVT 159
>gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
Length = 1476
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D I + + KP +P
Sbjct: 2 YLIFDTETTGLPRNWNAPITDTDNWPRCIQIAWQLHDELGNMI-EHQDYLVKPDGFNIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ + A G+ AE + + S ++G NI FD YR
Sbjct: 61 -DAERIHGISTELATEQGIELAEVLEKFNIALSKAK-FVVG-QNIGFDVNIMGCELYRLG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+S + V+ + + ++ P G FKL +L + G
Sbjct: 118 VESPMAQ----------MPVLDTCTEITAELLKLPGGRGGK--FKLPNLTELHQYLFGEP 165
Query: 171 HVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FAEAHNATADVEAT 179
>gi|116696325|ref|YP_841901.1| putative exonuclease [Ralstonia eutropha H16]
gi|113530824|emb|CAJ97171.1| putative exonuclease [Ralstonia eutropha H16]
Length = 220
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 30/191 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+ FV++D ET G D + +RV+R ++ +V KP+ P+ +
Sbjct: 48 LPERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVL-VKPSRKV---PKKITE 103
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGITP+ +GV E + + F+ N+R + +D
Sbjct: 104 LTGITPEMIEAEGVS-LESAVQDFAKFA---------GNLRLVS-------FNAEFDMAF 146
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
S G S + + A WP S++L ++A ++ + H A
Sbjct: 147 ISKAAGKSSITFANPV--SCALKMSRRAWPD----RKSYRLAEIAKDGNLDTSDMHRALG 200
Query: 180 DVY--ATLALV 188
D A +
Sbjct: 201 DCQRAAIVYCA 211
>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
15053]
gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM
15053]
Length = 1487
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 65/188 (34%), Gaps = 30/188 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+ + FV++D ET G D+ + V+V+ E F D +P P +
Sbjct: 444 LDDTFVVFDLETTGFSSIKDKIIEIGAVKVEGG-RITEKFSTFV----DPKIPIPFRITQ 498
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGIT Q + E E + F+ + +N FD +
Sbjct: 499 LTGITDQMVMD--APEIEAALPAFLEFAGDAALVA--HNAGFDVGFI------------- 541
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D D+ A+ + I P+ FKL +A A I N H A
Sbjct: 542 ---DQNCRYMDITPDFTAVDTVAMSRILLPTLSK----FKLNVVAKALNISLENHHRAVD 594
Query: 180 DVYATLAL 187
D AT +
Sbjct: 595 DAGATAEI 602
>gi|167464941|ref|ZP_02330030.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 89
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + ++D ET G D D+ + +R D + +V K +
Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEITAIRTDL-IREYGRLDVRITKNSG----------- 48
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP 89
T +TP+ G+ E+ I + ++P
Sbjct: 49 TKLTPEIINLTGINESMMRGGIPEELAIP 77
>gi|169827550|ref|YP_001697708.1| ATP-dependent helicase dinG [Lysinibacillus sphaericus C3-41]
gi|168992038|gb|ACA39578.1| Probable ATP-dependent helicase dinG [Lysinibacillus sphaericus
C3-41]
Length = 923
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 70/192 (36%), Gaps = 34/192 (17%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + I D ET G A DR Q A + + + W +IE T F P +P FI
Sbjct: 4 SQKYAIVDLETTGHSPANGDRMIQIA-IVIMKDW-EIERTYTKFINPGK-AIP----TFI 56
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T IT + +D E + I++ + C+ +N FD + + F R
Sbjct: 57 QDLTHITNEDV-KDSYPFEEHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP- 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
W +D + P + FKL DLA IE NAH A
Sbjct: 112 ---KWQGKK-----MDTVELAKILFPMSLG----------FKLGDLAADLNIELANAHRA 153
Query: 178 KADVYATLALVW 189
D AT L
Sbjct: 154 DDDARATAELFK 165
>gi|269977856|ref|ZP_06184812.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
gi|306818377|ref|ZP_07452103.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307701469|ref|ZP_07638488.1| exonuclease [Mobiluncus mulieris FB024-16]
gi|269933936|gb|EEZ90514.1| DNA polymerase III subunit epsilon [Mobiluncus mulieris 28-1]
gi|304648886|gb|EFM46185.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307613379|gb|EFN92629.1| exonuclease [Mobiluncus mulieris FB024-16]
Length = 258
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 31/189 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVR----VDRQWEKIESTEVFFCKPADDYLPDP-EAVFITG 62
+D ET G V DR A + +R D + + + +P P +A + G
Sbjct: 37 FDTETTGVWVRRDRIATASLIRRVGGEDTAYNWVINPG----------VPMPVKASEVNG 86
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T + + G A I + ++G+N + FD R +
Sbjct: 87 LTDEYLEKHGEQPAVALAEIASELAAAMSSGVPVVGFN-VAFDFEILEAELAR-YELPTL 144
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
+ G R P + KL + A G++ A H A
Sbjct: 145 RARLGG----------RIAPVIDPLVLDRTLDRYRRGKRKLATVCEAYGLDGNRAFHQAD 194
Query: 179 ADVYATLAL 187
+DV ATL L
Sbjct: 195 SDVTATLDL 203
>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 7 str. ATCC 27819]
gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 7 str. ATCC 27819]
Length = 1442
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 32/194 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T Q+ + D + E +I + F+ N ++ +N I FD + + + +
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLK-- 517
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179
N D L ++RAI + S +L + +++ + AH A
Sbjct: 518 ----NPSIDTLMILRAI--------------NPFKSHRLGAICKKYEVDYNDEVAHRADY 559
Query: 180 DVYATLALVWLIRE 193
D + +++
Sbjct: 560 DAMVLADVFKIMKN 573
>gi|269796146|ref|YP_003315601.1| DNA polymerase III subunit epsilon-like 3'-5' exonuclease
[Sanguibacter keddieii DSM 10542]
gi|269098331|gb|ACZ22767.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Sanguibacter keddieii DSM 10542]
Length = 241
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 23/196 (11%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV+ DR A VR + +TEV PEA I GIT +
Sbjct: 11 FDTETTGVDVSEDRIVSAALVR-----RHVGTTEVRTWLLDPGVPIPPEASSIHGITTEV 65
Query: 68 ALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY-RWSWD 123
A +G A I + + ++ +N FD + R + +
Sbjct: 66 ARAEGQDPAGALDEIAKEIAAALSEGIPVVAFNA-TFDLCILQAELRRYGLQTLEERTGA 124
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKADVY 182
D L + RA+ + G KL DL GIE H A DV
Sbjct: 125 EVAPVIDPLVLDRAVDRYRR----------GKR--KLVDLCGVYGIEGDGELHTADVDVL 172
Query: 183 ATLALVWLIREKKPKL 198
ATL ++ + + P++
Sbjct: 173 ATLDVLGAMVTQYPEI 188
>gi|297620852|ref|YP_003708989.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
86-1044]
gi|297376153|gb|ADI37983.1| DNA polymerase III, epsilon chain [Waddlia chondrophila WSU
86-1044]
Length = 231
Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 66/186 (35%), Gaps = 38/186 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR----QWEKIESTEVFFCKPADDYLPDP- 55
M + YD ET G DR + A D E++ + +P P
Sbjct: 1 MPARPIFYDTETTGIKAEHDRIVEIAAY--DPISGCSLEELVNPG----------IPIPK 48
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
EA + IT ++D E ++ F + +I +NN FD ++ R+ F R+
Sbjct: 49 EASKVHHIT-DDMVKDAPTFKEVGQK-FIEFCSGDVILIAHNNDNFDVHFLRHEFKRHAL 106
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ W D ++ + PD P LQ L IE NAH
Sbjct: 107 EMPE---------WRFFDTLKWARRYRPDL---PRHA-------LQFLREIYSIEANNAH 147
Query: 176 DAKADV 181
A DV
Sbjct: 148 RALDDV 153
>gi|255505426|ref|ZP_05346027.3| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
gi|255267960|gb|EET61165.1| helicase, RecD/TraA family [Bryantella formatexigens DSM 14469]
Length = 1010
Score = 55.2 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G D + + V+V+ + P A + GIT
Sbjct: 25 YVVFDLETTGISSKYDEVIEISAVKVEAG-QVTGEFSTL---VNPGRKIPPAASRVNGIT 80
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
K + + FS + FF+ ++G+N FD + YR+ +R D
Sbjct: 81 -DKMVAGALP---FSEVLGDFFAFAGDFVLVGHNINSFDMKF----LYRDAKKYFRKVPD 132
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N D +D + A P+ + +L DLA GI AH A D +
Sbjct: 133 N-----DYVDTLLLARAALPEL----------SHHRLVDLAEHYGISAKGAHRALNDCH 176
>gi|56420711|ref|YP_148029.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Geobacillus kaustophilus HTA426]
gi|56380553|dbj|BAD76461.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
Length = 909
Score = 55.2 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/199 (21%), Positives = 70/199 (35%), Gaps = 38/199 (19%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M FVI D ET G DR Q V+ +E FF + P +F
Sbjct: 1 MATRFVIIDLETTGNGPKKGDRIIQLGMAVVEDGL-IVERFASFF---NPE---QPIPLF 53
Query: 60 I---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I T I ++ + + A+ + I + +N + FD + + R +
Sbjct: 54 IQQLTNIN-EEMVEGAPLFADKAGEIAALMH--GAYFVAHN-VDFDLPFLQAELERAGWP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +D + I P+ + S+KL DLA G+ H H
Sbjct: 110 PF---------SGPTIDTVELAR------IVLPTAE----SYKLGDLARQLGLHHNRPHQ 150
Query: 177 AKADVYAT----LALVWLI 191
A +D T +AL+ +
Sbjct: 151 ADSDAEVTAKLFIALLKRL 169
>gi|227875110|ref|ZP_03993255.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
gi|227844388|gb|EEJ54552.1| DNA polymerase III epsilon subunit [Mobiluncus mulieris ATCC 35243]
Length = 258
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 31/189 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVR----VDRQWEKIESTEVFFCKPADDYLPDP-EAVFITG 62
+D ET G V DR A + +R D + + + +P P +A + G
Sbjct: 37 FDTETTGVWVRRDRIATASLIRRVGGEDTAYNWVINPG----------VPMPVKASEVNG 86
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T + + G A I + ++G+N + FD R +
Sbjct: 87 LTDEYLEKHGEQPAVALAEIASELAAAMSSGVPVVGFN-VAFDFEILEAELAR-YELPTL 144
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAK 178
+ G R P + KL + A G++ A H A
Sbjct: 145 RARLGG----------RIAPVIDPLVLDRTLDRYRRGKRKLATVCEAYGLDGNRAFHQAD 194
Query: 179 ADVYATLAL 187
+DV ATL L
Sbjct: 195 SDVTATLDL 203
>gi|330444392|ref|YP_004377378.1| DNA polymerase III subunit epsilon [Chlamydophila pecorum E58]
gi|328807502|gb|AEB41675.1| DNA polymerase III epsilon chain [Chlamydophila pecorum E58]
Length = 232
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 59/184 (32%), Gaps = 38/184 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPE-AVFIT 61
+ YD ET G + DR + A + V + P +P PE + I
Sbjct: 4 LIFYDTETTGTQIDKDRVIEIAAYNSSTKESF-------VTYVNPE---IPVPEDSSKIH 53
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT A+ + + F + ++ +NN FD + R +
Sbjct: 54 GIT--TAMVSSAPTFPEAYHNFKQFCGSASILVAHNNDNFDLPLLQKECQRYSLEPL--- 108
Query: 122 WDNGNSRWDLLDVMRAIYA--FSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+L + +A + PD P + LQ L G AH A
Sbjct: 109 --------NLRTIDSLKWAKKYRPDL---PKHN-------LQYLRQVYGFAENQAHRALD 150
Query: 180 DVYA 183
DV
Sbjct: 151 DVIT 154
>gi|256839708|ref|ZP_05545217.1| exonuclease [Parabacteroides sp. D13]
gi|256738638|gb|EEU51963.1| exonuclease [Parabacteroides sp. D13]
Length = 192
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAG-VRVD------RQWEKIESTEVFFCKPADDYLPDPEA 57
+ +D ET G + Q +G + +D + + C+ + EA
Sbjct: 3 LLFFDLETTGIKYWRNGVHQISGEIVIDGVTKESFNFNVCPHPQ---CEIEE------EA 53
Query: 58 VFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+ I ++ ++ E S+ + +F ++GYNN FD+++ +
Sbjct: 54 LRICNVSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAF 112
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F +N D+Y +SW NS D++ V+ + + T FK + +A A GI
Sbjct: 113 FVQNG-DNYFYSWFWVNSI-DVM-VLSTQHLMR--------KRHEMTDFKQETVARALGI 161
Query: 170 EHVNA--HDAKADVYATLALVWLIRE 193
+ +A HDA D+ T + I
Sbjct: 162 QIDSAKLHDASYDIQLTKKIYNRISS 187
>gi|34497823|ref|NP_902038.1| oligoribonuclease [Chromobacterium violaceum ATCC 12472]
gi|41017434|sp|Q7NVH5|ORN_CHRVO RecName: Full=Oligoribonuclease
gi|34103679|gb|AAQ60040.1| oligoribonuclease protein [Chromobacterium violaceum ATCC 12472]
Length = 181
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
TN+ + D E G + DR + A + D + + V + P+A+
Sbjct: 5 TNNLIWLDMEMTGLNPDQDRIIEVAMIVTDSNLNVLAESPVL-------VIHQPDAILDG 57
Query: 60 -------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYS 106
G + +K V EAE + + +F T + G N I D
Sbjct: 58 MDDWNKNTHGKSGLIEKVKNSTVSEAEAEQLLLEFMMQHVPERATPMCG-NTIHQD---- 112
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
F + + N D+ + + P+ A
Sbjct: 113 -RRFMARWMPKLEAYFHYRN--LDVSTLKELCKRWRPEI--------------------A 149
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
G+ H+A AD+ ++ + RE
Sbjct: 150 KGVVKRGKHEALADILESIEEMRYYRE 176
>gi|29839853|ref|NP_828959.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
gi|29834200|gb|AAP04837.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
Length = 249
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 40/213 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D E G DV DR +FA +R + I+S E D + E+ I I+
Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAMRFTFD-KVIDSMETL---INPDRVISAESQRIHRIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
L+D AE +I F I+G+ ++ FD ++
Sbjct: 65 -DAMLKDQPRIAEVFPKIKS-FLKEGDYIVGH-SVGFDLQVL--------TQEAERIGES 113
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S++ ++D +R Y SP+ L+ LA+ + + H A DV
Sbjct: 114 FLSKYYIIDTLRLAKEYGDSPNN-------------SLEALAVHFNVPYDGNHRAMKDVE 160
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLI 215
+ + + +R QL++++
Sbjct: 161 ININIFK----------HFCKRFRTIEQLKQML 183
>gi|313884171|ref|ZP_07817937.1| exonuclease, DNA polymerase III, epsilon subunit family
[Eremococcus coleocola ACS-139-V-Col8]
gi|312620618|gb|EFR32041.1| exonuclease, DNA polymerase III, epsilon subunit family
[Eremococcus coleocola ACS-139-V-Col8]
Length = 849
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/213 (23%), Positives = 77/213 (36%), Gaps = 45/213 (21%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV--FFCKPADDYLPDPEA 57
MT I D ET G ++ DR Q A + IE +V + + +P P
Sbjct: 1 MTTPIAIVDIETTGPNLDQGDRIIQIAAL-------IIEEGQVTKEYDMLINPNMPIPSH 53
Query: 58 V-FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR---N 113
+ +TGI+ ++ + + ++ H CI +NI FD + + F+ +
Sbjct: 54 ISKLTGISNEQVQKAPHL-SQVIDLWHYRLKD---CIFVAHNINFDLRFLKQCFHHFGLD 109
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
F LD ++ F P I F L DL+ +
Sbjct: 110 FNPP-------------ALDTVKLAKIFMPQAIG----------FNLTDLSQEMNLFFDQ 146
Query: 174 AHDAKADVYATLAL----VWLIREKKPKLFEYL 202
AH A AD T L LI + + K +YL
Sbjct: 147 AHQALADAKITAYLLDWIAQLIIQAEAKSLDYL 179
>gi|82548268|gb|ABB82959.1| putative DNA polymerase type III, exonuclease domain [uncultured
organism HF70_19B12]
Length = 270
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 62/190 (32%), Gaps = 29/190 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
+D ET G + DR Q+A + D + E+ PEA + GI+ +
Sbjct: 12 FDTETTGLNPRKDRILQYAFIGRDVDGSSVCQVELI----DPGIKI-PEASMNVHGISNE 66
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
G S I + I+G+N FD + F R
Sbjct: 67 DVTGRGSFGMH-SNDIAELID--GAIIVGHNINAFDWRFIEFEFMRVGEAVP-------- 115
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-L 185
S + L+D + G + L L GI AH A AD AT +
Sbjct: 116 SPYALVDTLELARGLR---------IPGRHT--LGHLCKRYGIGLDRAHSADADAAATLI 164
Query: 186 ALVWLIREKK 195
L +I +
Sbjct: 165 LLWKMIEGNQ 174
>gi|333023692|ref|ZP_08451756.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
gi|332743544|gb|EGJ73985.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
Length = 239
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/195 (20%), Positives = 60/195 (30%), Gaps = 20/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A +R+D + T + EA I GI +
Sbjct: 11 FDLETTGTDVEQDRIVTAAVIRLDSS-GAVAHTRTWL--LDPGVEIPAEATAIHGIPTAR 67
Query: 68 ALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR-WSWD 123
A DG I + + T ++ N R+D R+ +
Sbjct: 68 ARADGAPARGAVAEITEALAAELRVGTPLV-VMNARYDLSLLDRECRRHGVPALAELLGA 126
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D ++ +A S L L + AHDA++D A
Sbjct: 127 EPAPVID--PLVLDKHADRYR----------RGSRVLAALCAHYDVRLDTAHDARSDALA 174
Query: 184 TLALVWLIREKKPKL 198
L + P L
Sbjct: 175 ATLLARSLGAHHPSL 189
>gi|326790794|ref|YP_004308615.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
5427]
gi|326541558|gb|ADZ83417.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
5427]
Length = 237
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/213 (21%), Positives = 69/213 (32%), Gaps = 55/213 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEA 57
N +V+ D ET G + V ++ + ++ DY+
Sbjct: 2 NKYVVVDIETTGAHPVQSEIIEIGAVYIEEGQVKKIFNELVRPTQIIS----DYIIS--- 54
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR-------NIF 110
ITGIT + +E R I VP +IG+N I FD + F
Sbjct: 55 --ITGITNEMVADAPPIEEVMPRFIDFCEDVP---LIGHNIILFDYRMLKTKATALGFTF 109
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+ D+ ++ + S KL DL I
Sbjct: 110 EKMGVDTL------------VISRKMLAHL---------------PSRKLGDLCEHYAIS 142
Query: 171 HVNAHDAKADVYATLALVWLIR----EKKPKLF 199
NAH A D +AT L +R +K+ KLF
Sbjct: 143 LENAHRAYHDAFATYELFEKLRNEFEKKEAKLF 175
>gi|126651265|ref|ZP_01723475.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. B14905]
gi|126592103|gb|EAZ86169.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. B14905]
Length = 914
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 67/185 (36%), Gaps = 34/185 (18%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI---TGIT 64
D ET G A DR Q A + + + W +IE T F P +P FI T IT
Sbjct: 2 DLETTGHSPANGDRMIQIA-IVIMKDW-EIERTYTKFINPGK-AIPS----FIQDLTHIT 54
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +D E + I++ + C+ +N FD + + F R W
Sbjct: 55 NEDV-KDSYPFEEHADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP----KWQG 106
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + P + FKL DLA IE NAH A D AT
Sbjct: 107 KK-----MDTVELAKILFPMSLG----------FKLGDLAADLNIELANAHRADDDARAT 151
Query: 185 LALVW 189
L
Sbjct: 152 AELFK 156
>gi|227485452|ref|ZP_03915768.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Anaerococcus lactolyticus ATCC 51172]
gi|227236582|gb|EEI86597.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Anaerococcus lactolyticus ATCC 51172]
Length = 295
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 40/197 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFI 60
T ++I D ET G D DR + ++ I + D + I
Sbjct: 126 TKAYIIIDLETTGLDPINDRIIEIGAIK-------IGKENKEYSSIIWQDIKLSEKISNI 178
Query: 61 TGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
TGI+ + ++ G E EF I + ++GYN I FD + R
Sbjct: 179 TGIS-DEDIKKGKDEKNAINEFIDFIGEDT------LVGYN-INFDIKFINESLKRQEKP 230
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N +D++ ++ F + +KL+ + GI H
Sbjct: 231 KIK------NMTYDVMQYVKNDKLFLKN-------------YKLETVIKEYGINKNVPHR 271
Query: 177 AKADVYATLAL-VWLIR 192
A DV L L +
Sbjct: 272 ALEDVKIIQKLIAKLNK 288
>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 12 str. ATCC 33696]
gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 4 str. ATCC 27816]
gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 12 str. ATCC 33696]
gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 4 str. ATCC 27816]
Length = 1442
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T Q+ + D + E +I + F+ N ++ +N I FD + + +
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL 516
>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 11 str. ATCC 33695]
gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 11 str. ATCC 33695]
Length = 1442
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T Q+ + D + E +I + F+ N ++ +N I FD + + +
Sbjct: 462 TNISQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPL 516
>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
Length = 1435
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 31/197 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G D + A V++ + I+ E F + + +TG
Sbjct: 419 ETFVVFDLETTGLSAVYDTIIELAAVKIKGG-QIIDKFESFA---NPHHELSSTTIDLTG 474
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF-YDSYRWS 121
IT + E E I ++ I+ +N FD + + Y+ + D+ +
Sbjct: 475 ITDD--MVKNAPEVE--EVIRKYHEWAGDHIMVAHNASFDMGFL-YVCYKKYGIDTVHAT 529
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D + P+ + +L LA GIE H A D
Sbjct: 530 ----------IDTLELARMLHPEL----------KNHRLNTLAKKFGIELTQHHRAIYDT 569
Query: 182 YAT-LALVWLIREKKPK 197
AT L L++E K
Sbjct: 570 EATSYLLTHLLKEADQK 586
>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 2 str. ATCC 27814]
gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 2 str. ATCC 27814]
Length = 1442
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T Q+ + D + E +I + F+ N ++ +N I FD + + +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE 517
>gi|29840147|ref|NP_829253.1| DNA polymerase III subunit epsilon [Chlamydophila caviae GPIC]
gi|29834495|gb|AAP05131.1| DNA polymerase III, epsilon chain [Chlamydophila caviae GPIC]
Length = 228
Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 59/183 (32%), Gaps = 36/183 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
+ YD ET G + DR + A + + V + P +P P EA I GI
Sbjct: 4 LIFYDTETTGTQIDKDRIIEIAAYN-----NVTKQSFVTYVNPE---IPIPEEASKIHGI 55
Query: 64 TPQK-ALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T + EA +F F ++ +NN FD R+ +
Sbjct: 56 TTSTVSSAPKFPEAYKQFCD-----FCGNEAILVAHNNDSFDFPLLEKECRRHSLEPLSL 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D ++ + PD P + LQ L G AH A D
Sbjct: 111 RT---------IDSLKWAQKYRPDL---PKHN-------LQYLRQVYGFAENQAHRALDD 151
Query: 181 VYA 183
V
Sbjct: 152 VIT 154
>gi|229366424|gb|ACQ58192.1| Oligoribonuclease, mitochondrial precursor [Anoplopoma fimbria]
Length = 266
Score = 54.4 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP-------ADDYL 52
M+ V D E G D+ D+ + A + D + + +P ++
Sbjct: 70 MSQRMVWVDLEMTGLDIEKDQIIEMACIITDSNLNILAEGPNLIINQPNELLEGMSEWCK 129
Query: 53 PD------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT ++A E EF + Q + P C + N++ D +
Sbjct: 130 EHHGKSGLTQAVQDSKITLEQA------EYEFLSFVRQH-TPPGQCPLAGNSVHADKRFL 182
>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str.
ATCC 33699]
gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 10 str. ATCC 33699]
Length = 1442
Score = 54.4 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T Q+ + D + E +I + F+ N ++ +N I FD + + +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE 517
>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 9 str. ATCC 33175]
gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 9 str. ATCC 33175]
Length = 1442
Score = 54.4 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T Q+ + D + E +I + F+ N ++ +N I FD + + +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE 517
>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 13 str. ATCC 33698]
gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 13 str. ATCC 33698]
Length = 1442
Score = 54.4 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T Q+ + D + E +I + F+ N ++ +N I FD + + +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFA--NHILVAHNGISFDINFINQRLLKWGLEPLE 517
>gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL
B-59395]
Length = 623
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/227 (20%), Positives = 71/227 (31%), Gaps = 50/227 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV+ D ET G DR + V++ E + P+ V +TG
Sbjct: 57 TTFVVVDLETTGGSADDDRITEIGAVKIRGG-EVLGEFATL---VDPGRAIPPQIVALTG 112
Query: 63 ITPQKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT +E AEF+R T ++ +N RFD + R R
Sbjct: 113 ITTAMLYDAPRIEEVLPAFAEFAR---------GTVLVAHNA-RFDMGFLRKSAARMRLP 162
Query: 117 -SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ S L V+ A S A + KL LA + H
Sbjct: 163 WPFSTS---------LCTVVMARRILSRQ---------EAPTVKLSALAELFQVSVRPTH 204
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
A D AT+ +F L + ++ + D+ P
Sbjct: 205 RALDDARATVE-----------VFHRLLERVGNQGVQTVGDLTAYLP 240
>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
ALC-1]
gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium
ALC-1]
Length = 1128
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 52/213 (24%), Positives = 71/213 (33%), Gaps = 45/213 (21%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G D P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIEH---------QDYLVK 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
PE A I GI+ + A GV +E + + S T + N++FD
Sbjct: 53 PEGFNIPYDAEKIHGISTELAQEQGVSLSEVLEKFNTALSK--TKFVVGQNVKFDLNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F R + L V+ + Q P G FKL L +
Sbjct: 111 AEFVREDVANPLQE----------LPVLDTCTEHTASLCQIPGGRYGK--FKLPTLTELH 158
Query: 168 GIEHVN----AHDAKADVYATLAL-VWLIREKK 195
AH+A ADV AT LIR+++
Sbjct: 159 QFLFNTPFGEAHNATADVEATTRCFFELIRKQQ 191
>gi|261400541|ref|ZP_05986666.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
gi|269209608|gb|EEZ76063.1| oligoribonuclease [Neisseria lactamica ATCC 23970]
Length = 187
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +DD L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDDVLNKMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESLHTEAEVEQKLLDFMSEW 95
>gi|325478691|gb|EGC81802.1| CRISPR-associated endoribonuclease Cas2 [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 292
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 40/201 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFIT 61
+V+ D ET G D + + V + Q E ++ E K +++ + +T
Sbjct: 125 YVVVDIETSGLDYEKHKIIEIGAVLTNSQGEVLDKFESLIRQEIKLSNEII------KLT 178
Query: 62 GITPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
GIT + G V+E +F I P ++GYN FD + +N
Sbjct: 179 GITDNDLINGGDEKKVLE-DFVCFIKNH---P---LVGYN-FNFDMKFLNYNLEKNSLKE 230
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
N+ +DL Y ++KL+ + GI+ H A
Sbjct: 231 IT------NTTYDLKT-----YVKREKMF--------LKNYKLETVLKEYGIKKKVDHRA 271
Query: 178 KADVYATLALVWLIREKKPKL 198
AD T+ L + E KL
Sbjct: 272 LADALVTVNLASQVNEFLKKL 292
>gi|254524227|ref|ZP_05136282.1| exonuclease [Stenotrophomonas sp. SKA14]
gi|219721818|gb|EED40343.1| exonuclease [Stenotrophomonas sp. SKA14]
Length = 188
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 5 FVIYDYETFGRDVALDRPA---------QFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
YD ET G A P+ Q A V+ K+ S+ KP +P+
Sbjct: 4 IFFYDTETTGL-PAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTIPE- 61
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
E I GIT ++A + G+ E+ + + + + + IG+ FD R R
Sbjct: 62 EVTRIHGITNEQAEQCGLDESLVTELVLDMWRLSD-VRIGH-VESFDARILRIALKRYAT 119
Query: 116 DSYRWSWDNG 125
W G
Sbjct: 120 AQVADEWKAG 129
>gi|299538599|ref|ZP_07051882.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
gi|298726186|gb|EFI66778.1| ATP-dependent helicase dinG [Lysinibacillus fusiformis ZC1]
Length = 923
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 69/192 (35%), Gaps = 34/192 (17%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + I D ET G A DR Q A + + + W +IE T F P +P FI
Sbjct: 4 SQKYAIVDLETTGHSPANGDRMIQIA-IVIMKDW-EIERTYTKFINPGK-AIP----TFI 56
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T IT + EA + I++ + C+ +N FD + + F R
Sbjct: 57 QDLTHITNEDVKDAFPFEAH-ADYIYELLAD---CVFVAHNADFDLSFLQAEFKRAGLP- 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
W +D + P + FKL DLA IE NAH A
Sbjct: 112 ---KWQGKK-----MDTVELAKILFPMSLG----------FKLGDLAADLNIELANAHRA 153
Query: 178 KADVYATLALVW 189
D AT L
Sbjct: 154 DDDARATAELFK 165
>gi|46445870|ref|YP_007235.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399511|emb|CAF22960.1| putative DNA polymerase III epsilon chain [Candidatus
Protochlamydia amoebophila UWE25]
Length = 249
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 51/277 (18%), Positives = 89/277 (32%), Gaps = 53/277 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPE-AVF 59
N F+ D ET G D DR + A + D + ++ES C P PE ++
Sbjct: 7 NKFICIDCETTGLDPQQDRIIEVAVMCFDGNQVYAQMESLINPEC-------PIPETSIA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I IT Q ++D +I + S IIG+ + FD R+
Sbjct: 60 IHHIT-QDMVKDKPTINHVLPQILELISD--HIIIGHG-VGFDIEILAVAAERHGIPCKI 115
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N D L + R + L+ L I AH A +
Sbjct: 116 R----KNRFLDTLRMARLY--------------GESPVNSLEYLRKHFNIPLEGAHRAMS 157
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV + + ++ +L ++ + P++ + G +
Sbjct: 158 DVIVNKEVFKHLSKRY-------------RTTEQLFEVLS-KPILMNTMPLGKHKGRLLK 203
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKR 276
P+ + CN D + + + +L +R
Sbjct: 204 EIPLQYLQ------WVCNKDFDQDLLFSVRT-ELKRR 233
>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
leachii PG50]
gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
leachii PG50]
Length = 1480
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 54/228 (23%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------ 59
V +D ET G LD +F + + ++ E ++ D L P+A
Sbjct: 434 VFFDLETTGLSPELDEIIEFGAI--EYNFKTGERKKI-------DILIKPKAKLKDFTKK 484
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T I + +E F ++I+Q I+ +N FD F +
Sbjct: 485 LTNINEEMLENKPGIEVAF-KQINQIIKD---AILVAHNANFD-----YTFLSH------ 529
Query: 120 WSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NAH 175
WS G + + ++D + P+ S +L LA I + AH
Sbjct: 530 WSQKLGYGKLENTIIDTLTISRIIYPEL----------KSHRLGSLAKRVNISYDPSVAH 579
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
D ++ + ++ + + R K ++ D + PL
Sbjct: 580 RGDYD-------ADILADIYERMLD---ETRKKTKITIDSDWDKINPL 617
>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
LAA1]
gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
LAA1]
Length = 1440
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 43/226 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G + D + A V+V + +++ + DP+ V +TGIT
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAG-QIVDTYATL---IDPERALDPKIVELTGIT 482
Query: 65 PQK-ALRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ A + + EA +F+R ++ +N FD + R D
Sbjct: 483 NEMVAGQPKLKEALDGFRQFAR---------GAVLVAHNA-EFDVGFLNQCAERLGLDP- 531
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W+ ++D + P G ++KL+ L ++ VN H A
Sbjct: 532 ---WEEP-----VIDTLALARVLYP----------GEKNYKLKTLTQKFSVDLVNHHRAL 573
Query: 179 ADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
AD AT + V ++++ K + L D N LR IDI + P
Sbjct: 574 ADSEATAKVFVHMLKDAKARGIHNLLDM---NHLRGQIDISRVRPF 616
>gi|217974867|ref|YP_002359618.1| oligoribonuclease [Shewanella baltica OS223]
gi|217500002|gb|ACK48195.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
OS223]
Length = 181
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 50/211 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N+ + D E G + +DR + A + D++ I V +DD L A
Sbjct: 6 NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVL----AAMDDW 61
Query: 60 ---ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS-R 107
G + + EA+ + F C N+I D + R
Sbjct: 62 NQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCG---NSIGQDRRFLNR 118
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+ R D + + D+ + + +SP+ +
Sbjct: 119 YM--RELEDYFHY------RNVDVSTIKELVKRWSPETMV-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G + N H A D+ ++A + R K K+
Sbjct: 151 GFKKQNTHQALQDIQESIAELQYYRSKVFKI 181
>gi|119387281|ref|YP_918315.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
PD1222]
gi|119377856|gb|ABL72619.1| DNA polymerase III, epsilon subunit [Paracoccus denitrificans
PD1222]
Length = 659
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 65/197 (32%), Gaps = 42/197 (21%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
V++D ET G D DR Q AG+R +++ + +P P +
Sbjct: 454 VVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPG----RPIP-----PASTA 504
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GIT A+ G + + F+ +T ++ +N FD F R
Sbjct: 505 VHGIT--DAMVAGAPDMTAALTAFHHFA-EDTVLVAHNA-PFD-----MGFLRRAVPETG 555
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDA 177
+DN +LD + W + L L GI H A
Sbjct: 556 AHFDNQ-----VLDTVLLSAML------WGQSAPHS----LDALTERLGIVIPPEARHTA 600
Query: 178 KADVYATLA-LVWLIRE 193
D AT + LI
Sbjct: 601 MGDARATAEAYLRLIAA 617
>gi|229496202|ref|ZP_04389922.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
gi|229316780|gb|EEN82693.1| exonuclease [Porphyromonas endodontalis ATCC 35406]
Length = 258
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 51/205 (24%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
V +D E+ G DR + + ++V EV + + +P+ E+ + GI
Sbjct: 9 LVFFDIESTGLSPEKDRIVEISLIKVYPD----GHEEVRTRRLNPECHIPE-ESTAVHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFD-----DYYSRN----IFYR 112
T D V + R++ + + + I GYN+ RFD + + R F R
Sbjct: 64 T-----DDDVRDCPTFRQVAKSLASMIQGCDIAGYNSNRFDVPLLGEEFLRADVEVDFSR 118
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + R + A Y F D +DL
Sbjct: 119 CRFIDVQTIFHKMERR-----TLEAAYKFYCD----------------KDLTE------- 150
Query: 173 NAHDAKADVYATLALVWLIREKKPK 197
AH A+AD ATL ++ ++ P+
Sbjct: 151 -AHSAEADTRATLEVLKAQLDRYPE 174
>gi|311030323|ref|ZP_07708413.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus sp. m3-13]
Length = 844
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 42/227 (18%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M FV+ D ET G D+ Q V + E +E F P
Sbjct: 1 MKQRFVVLDLETTGNTPKKNDKIIQVGAVLI-EDGEIVERFASF---VNPQCTIPPFIEQ 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T I Q + A+ + + + + +N+ FD + ++ + + ++
Sbjct: 57 LTNIN-QDMVGRAPTFAQIAPMLCEMLKGSSLVA---HNVPFDLSFLQHELKTSGHPTFS 112
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
GN+ D + P S+KL DL++ + H N H A +
Sbjct: 113 -----GNT----FDTVELARILLPT----------QKSYKLTDLSIFYELNHDNPHRADS 153
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
D AT + K + I I+ + +H
Sbjct: 154 DAEATAII--------------FLKLLEKIKTLPSITIKQLHTFLHT 186
>gi|290962326|ref|YP_003493508.1| DNA polymerase III subunit epsilon [Streptomyces scabiei 87.22]
gi|260651852|emb|CBG74981.1| putative DNA polymerase III, epsilon chain (EC 2.7.7.7)
[Streptomyces scabiei 87.22]
Length = 613
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 28/181 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR + + +D Q + D DP V + G+T +
Sbjct: 23 DVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTL---LNPDC--DPGPVHVHGLTADRL 77
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
E E + ++ S ++ +N +FD + + F + SW
Sbjct: 78 AGAPAFE-EIAPQVGALLSSR---VLVAHNAQFDYDFLAHEFAQ------VRSWA----- 122
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
V R + + + + P+ D KL LA G+ AHDA+ DV ++
Sbjct: 123 ----PVSRRLCTLALNRLVGPATPD----LKLGTLAAHYGVRQEKAHDAQDDVRVLSGIL 174
Query: 189 W 189
Sbjct: 175 R 175
>gi|91093385|ref|XP_971552.1| PREDICTED: similar to AGAP012804-PA [Tribolium castaneum]
gi|270015360|gb|EFA11808.1| hypothetical protein TcasGA2_TC008587 [Tribolium castaneum]
Length = 211
Score = 54.4 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 47/207 (22%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD--- 54
V D E G DVA D+ + A + D I + K +
Sbjct: 37 VWVDMEMTGLDVATDKIMEVACIITDGDLNIIAEGPDLIIHHPQNILDKMNEWCKTHHSK 96
Query: 55 ---PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
EA + I+ ++A + ++ + + + G N++ D + R
Sbjct: 97 SGLSEACLKSKISVEEAQDK------LMDFVAEYVTEKVSPLAG-NSVYMDRLFLRK--- 146
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
Y + + D+ V ++PD + + +F
Sbjct: 147 ---YMPRLHEYLHY-RIIDVSTVKELCRRWNPDVYK----EAPKKAF------------- 185
Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198
+H A +D+ ++ + + + K+
Sbjct: 186 --SHRALSDIKESIEELKYYKSRFFKI 210
>gi|262382001|ref|ZP_06075139.1| exonuclease [Bacteroides sp. 2_1_33B]
gi|262297178|gb|EEY85108.1| exonuclease [Bacteroides sp. 2_1_33B]
Length = 192
Score = 54.0 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 38/206 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAG-VRVD------RQWEKIESTEVFFCKPADDYLPDPEA 57
+ +D ET G + Q +G + +D + + C+ + EA
Sbjct: 3 LLFFDLETTGIKYWRNGVHQISGEIVIDGVTKESFNFNVCPHPQ---CEIEE------EA 53
Query: 58 VFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+ I ++ ++ E S+ + +F ++GYNN FD+++ +
Sbjct: 54 LRICNVSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAF 112
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F +N D Y +SW NS D++ V+ + + T FK + +A A GI
Sbjct: 113 FVQNG-DHYFYSWFWVNSI-DVM-VLSTQHLMR--------KRHEMTDFKQETVARALGI 161
Query: 170 EHVNA--HDAKADVYATLALVWLIRE 193
+ +A HDA D+ T + I
Sbjct: 162 QIDSAKLHDASYDIQLTKEIYNRISS 187
>gi|296133462|ref|YP_003640709.1| DnaQ family exonuclease/DinG family helicase [Thermincola sp. JR]
gi|296032040|gb|ADG82808.1| DnaQ family exonuclease/DinG family helicase [Thermincola potens
JR]
Length = 994
Score = 54.0 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 53/193 (27%)
Query: 1 MT-NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV- 58
M+ N FV D ET G + A + A VR + +E+ + KP P +
Sbjct: 1 MSKNTFVAVDIETTGLNPADSEIIEVAAVRF-AEGRVLETFQSL-VKPEKKI---PLKIQ 55
Query: 59 FITGIT-------PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+TGI P A G++ AEF +H + IIG+N I FD F
Sbjct: 56 QLTGINESMVADAPACAEVTGML-AEF---VHD------SIIIGHN-IGFD-----LNFL 99
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA----- 166
++++ + + +D L + R + WP ++L +L A
Sbjct: 100 QHYHPVFIRA-----RYYDTLPLAR---------LVWPKA----HGYRLANLVEALKIQL 141
Query: 167 NGIEHVNAHDAKA 179
NG H HDA A
Sbjct: 142 NGSPHRAFHDALA 154
>gi|297690289|ref|XP_002822552.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 1 [Pongo
abelii]
gi|332208258|ref|XP_003253217.1| PREDICTED: oligoribonuclease, mitochondrial-like [Nomascus
leucogenys]
Length = 237
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 151
>gi|296216233|ref|XP_002754546.1| PREDICTED: oligoribonuclease, mitochondrial-like [Callithrix
jacchus]
Length = 237
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|291383854|ref|XP_002708465.1| PREDICTED: small fragment nuclease [Oryctolagus cuniculus]
Length = 237
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|119587653|gb|EAW67249.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
[Homo sapiens]
Length = 179
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 151
>gi|302563935|ref|NP_001180742.1| oligoribonuclease, mitochondrial [Macaca mulatta]
gi|90080269|dbj|BAE89616.1| unnamed protein product [Macaca fascicularis]
Length = 237
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 151
>gi|224496106|ref|NP_056338.2| oligoribonuclease, mitochondrial precursor [Homo sapiens]
gi|55637001|ref|XP_508768.1| PREDICTED: oligoribonuclease, mitochondrial isoform 2 [Pan
troglodytes]
gi|116242694|sp|Q9Y3B8|ORN_HUMAN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
exonuclease 2 homolog; AltName: Full=Small fragment
nuclease; Flags: Precursor
gi|62897961|dbj|BAD96920.1| small fragment nuclease variant [Homo sapiens]
gi|79158846|gb|AAI07888.1| REXO2 protein [Homo sapiens]
gi|85397890|gb|AAI05025.1| Small fragment nuclease [Homo sapiens]
gi|85397892|gb|AAI05027.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
gi|119587654|gb|EAW67250.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|189065256|dbj|BAG34979.1| unnamed protein product [Homo sapiens]
gi|219520365|gb|AAI43702.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Homo sapiens]
Length = 237
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 151
>gi|5817183|emb|CAB53690.1| hypothetical protein [Homo sapiens]
gi|49065426|emb|CAG38531.1| DKFZP566E144 [Homo sapiens]
gi|117646830|emb|CAL37530.1| hypothetical protein [synthetic construct]
gi|208965440|dbj|BAG72734.1| REX2, RNA exonuclease 2 homolog [synthetic construct]
Length = 237
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGRSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 151
>gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922]
gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922]
Length = 1463
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D + + + KP +P
Sbjct: 2 YLIFDTETTGLPKDWNAPITDSDNWPRCIQIAWQLHDELGNLV-EHQDYLVKPDGFDIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
++ I GI+ A GV E + + + T I N+ FD FYR
Sbjct: 61 -DSERIHGISTALATEQGVPLEEVLDKFQKALAK--TKFIVGQNLGFDINIMAAEFYRKG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI----E 170
++ + D L V+ + + ++ P G +KL L +
Sbjct: 118 VEN----------KLDQLPVLDTCTETTAELLKLPGGRGGR--YKLPTLTELHEFLFQVP 165
Query: 171 HVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FSEAHNATADVEAT 179
>gi|33593048|ref|NP_880692.1| putative exonuclease [Bordetella pertussis Tohama I]
gi|33563423|emb|CAE42302.1| putative exonuclease [Bordetella pertussis Tohama I]
gi|332382461|gb|AEE67308.1| putative exonuclease [Bordetella pertussis CS]
Length = 224
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G VA +FA VRV +IE + L P +TGIT
Sbjct: 57 FVVADLETTGLSVATCEILEFAAVRV-SACGQIEREFTQVVRTDGRVL--PFISRLTGIT 113
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ RDGV + F ++N FD + + R +
Sbjct: 114 QAEVERDGVPVRQAFGDFLD-FIEGGPLF--FHNASFDRRFLQAAADRTGLP---FEAQT 167
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+M A A WP S KL LA G H A ADV T
Sbjct: 168 HC------TLMLARQA-------WPE----LPSHKLNVLARHLGASEPT-HRALADVRTT 209
>gi|266619696|ref|ZP_06112631.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
gi|288868749|gb|EFD01048.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
Length = 264
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 54/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFIT 61
+++V++D ET G D + + ++V F + + P P A +
Sbjct: 56 DNYVVFDLETTGISAVKDDIIEISALKVKNH-----EQVETFSRLVNPRRPIPAGATKVN 110
Query: 62 GITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFD--------DYYSRNIF 110
GIT + + +E EF I +IG+N FD D R
Sbjct: 111 GITDEMVQSEPGLEFILPEFLDFIDGE------ILIGHNIQSFDLLFLNRAADEVCRKAV 164
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
D +D + A P G + +L DLA I
Sbjct: 165 LN-----------------DFIDTLFMARALLP----------GLSRHRLTDLADYFKIS 197
Query: 171 HVNAHDAKADVYA--TL--ALVWLIREK 194
AH A D + L+++
Sbjct: 198 SEGAHRAFNDCVMNQICYEHMGKLLKDA 225
>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum B str. Eklund 17B]
Length = 1452
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 68/190 (35%), Gaps = 40/190 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + FV++D ET G D+ + V++ E I+ F P D +P
Sbjct: 435 LDDTFVVFDLETTGFSPVNDKIIEIGAVKIKSG-EIIDEFSCF-VNPQRD-IPY------ 485
Query: 61 TGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT Q D V +A+ I F +T I+ +N FD + +
Sbjct: 486 -KIT-QLTSIDNNMVKDADVIENILPKFMEFCEDTVIVAHNA-AFDTGFIKKNC------ 536
Query: 117 SYRWSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ N R+D +LD + P+ + KL +A GI N
Sbjct: 537 ------RDLNIRFDIPILDTVTLCRFLYPELKKV----------KLNIVAKFLGISLENH 580
Query: 175 HDAKADVYAT 184
H A D AT
Sbjct: 581 HRAVDDAKAT 590
>gi|256828365|ref|YP_003157093.1| DNA polymerase III subunit epsilon [Desulfomicrobium baculatum DSM
4028]
gi|256577541|gb|ACU88677.1| DNA polymerase III, epsilon subunit [Desulfomicrobium baculatum DSM
4028]
Length = 244
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 66/208 (31%), Gaps = 34/208 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
D E G + VRV R + + +P+ +P P+ + I ITP+
Sbjct: 50 DTELTGLSARREEIVSIGAVRV-RGLAIVPGESFSVLVRPS---IPLPKTSTLIHRITPE 105
Query: 67 -KALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A + E E F T I+G++ + D + +N
Sbjct: 106 AIAQAPPLAEVLPELI-----EFCK-GTLIVGHH-VGLDMSFLNRACRKNHGQPLA---- 154
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA---TSFKLQDLALANGIEHVNAHDAKAD 180
N D + + PS + S+ L DLA + AH+A D
Sbjct: 155 --NPCLDTMRMAMLWREKR-----TPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGD 207
Query: 181 VYAT----LALVWLIREKKPKLFEYLYD 204
T + L I +P L+
Sbjct: 208 ALQTAYLFIYLAKKIAGNRPLTLRELFR 235
>gi|134046188|ref|YP_001097673.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
maripaludis C5]
gi|132663813|gb|ABO35459.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
maripaludis C5]
Length = 189
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 20/182 (10%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V D ET G + + AQ + + D I+ E + K +P+A + G++
Sbjct: 3 VFLDTETTGLEPG--QIAQISYIISDDDLN-IQKAENIYFKVKS---MEPKAQSVHGLSI 56
Query: 66 QKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+K L +G A+ S +I + I+ +N+ FD + + F R + +
Sbjct: 57 EKLESLSEGKSFADHSTQILDDINQK---ILICHNVPFDYKFLNSEFVRCGIEYDPKKFC 113
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGI--EHVNAHDAK 178
N +L + P G +WP + D + K + L A + HD++
Sbjct: 114 TMNHYTNLCGIPNPY---RP-GYKWPRLEETLDFLSIEKSEVLKNALNLFGNTTGFHDSR 169
Query: 179 AD 180
D
Sbjct: 170 FD 171
>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 1403
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 70/211 (33%), Gaps = 40/211 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
FV++D E+ G A D + V++ ++ F P P PE V +T I
Sbjct: 393 FVVFDIESTGLSPASDMITEIGAVKI-EDGVIVDRF-SRFVNPMR---PIPEKVVELTRI 447
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + E + F T + +N FD + R +
Sbjct: 448 TNEMVANE--PPIEVVIKDFVEFIGDATLVA--HNAEFDTAFIRRDMDKVGL-------- 495
Query: 124 NGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D LD + A D F L + G+ AH A D
Sbjct: 496 ----KFDFPVLDTLYLSRAILNDL----------KRFNLSAICKKLGVNLEGAHRAVNDA 541
Query: 182 YAT----LALVWLIREKKPKLFEYLYDYRNK 208
AT + ++ L PK FE + +K
Sbjct: 542 EATAEAFIKMMKL--GGSPKSFEEINKLFDK 570
>gi|206890301|ref|YP_002247886.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742239|gb|ACI21296.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 230
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 73/199 (36%), Gaps = 41/199 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-------EA 57
FV+ D E G + D ++ + I+ ++F+ P E+
Sbjct: 24 FVVVDTELTGLNEFRDNIIAIGAIK--MKGRTIKIGDIFY------RTVSPSTKKFRKES 75
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYN---NIRFDDYYSRNIFYR 112
+ I ITP + + +E I + F N ++G+ ++ F RN R
Sbjct: 76 IMIHEITPSELEKCPQIEP-----ILREFIKFSKNCLVVGHCVDIDLTFLKKEIRNNL-R 129
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
++ + + ++ + + + PS S L+D+AL+ IE
Sbjct: 130 EIFEPFS-----------IDTLLIYKWLIKKEIL--PSDFSNKNS--LEDIALSLDIEPK 174
Query: 173 NAHDAKADVYATLALVWLI 191
HDA +D + T + +
Sbjct: 175 ELHDALSDAFITAQIFQRL 193
>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
16795]
gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM
16795]
Length = 1432
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 69/224 (30%), Gaps = 49/224 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++ FV++D ET G D+ + V+V + +E ++ P D + +
Sbjct: 414 LSQTFVVFDLETTGFSNKNDKITEIGAVKV-KNFEIVDRFNELI-NPEKDI--SYKVQEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFY 115
TGIT +E I F +G + N FD +
Sbjct: 470 TGITNDLIKDKPTIE-----EILPKFME----FVGDSVLVAHNAEFDIGFINQKC----- 515
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ N + +D + P FKL +L G+ N H
Sbjct: 516 KEMNIEFKNKS-----VDTLMLARILLPHL----------KRFKLNNLTKELGVPLHNHH 560
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
A D AT + F D K +KL D+
Sbjct: 561 RAVDDAAATAQI-----------FIKFLDMLQKKGAKKLSDVNE 593
>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
Length = 893
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 51/202 (25%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V++D ET G DV D + A +R+ + + + +
Sbjct: 513 VVFDTETTGLDVYEDDIIEIAAIRL-HNGKPVGEPLDLY-------------IETNR--- 555
Query: 66 QKALRDGVVEAEFSRRIHQFFS-----VPNTCI------------IGYNNIRFDDYYSRN 108
+ G E H+ + PN +G+N + +D +
Sbjct: 556 PILEKLGENENPLYPIYHEKLAKGELLQPNEAFQLFWNYVGDATLLGHN-VMYDRNILHH 614
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
R+ D ++ N +D L +MR P+ S+KL+ L
Sbjct: 615 NLLRHAQD---CMENHANPVFDSLKIMRL---LQPNL----------PSYKLETLLERFQ 658
Query: 169 IEHVNAHDAKADVYATLALVWL 190
+ N+H A DV AT++LV L
Sbjct: 659 LVGENSHKAIDDVAATISLVAL 680
>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 1440
Score = 54.0 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 43/226 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G + D + A V+V + +++ + DP+ V +TGIT
Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKVKAG-QIVDTYATL---IDPERSLDPKIVELTGIT 482
Query: 65 PQK-ALRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ A + + EA +F+R ++ +N FD + R D
Sbjct: 483 NEMVAGQPKLREALDGFRQFAR---------GAVLVAHNA-EFDVGFLNQCAERLGLDP- 531
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W+ ++D + P G ++KL+ L ++ VN H A
Sbjct: 532 ---WEQP-----VIDTLALARVLYP----------GEKNYKLKTLTQKFSVDLVNHHRAL 573
Query: 179 ADVYATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
AD AT + V ++++ K + L D N LR IDI + P
Sbjct: 574 ADSEATAKVFVHMLKDAKARGIHNLLDM---NHLRGQIDISRVRPF 616
>gi|227494840|ref|ZP_03925156.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
15436]
gi|226831292|gb|EEH63675.1| DNA polymerase III subunit epsilon [Actinomyces coleocanis DSM
15436]
Length = 232
Score = 54.0 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 25/202 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITG 62
+ + +D ET G D A DR A V E +E + F +P A+ + G
Sbjct: 7 NLLGFDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLF---NPGVEIPQ-SAIDVHG 61
Query: 63 ITPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
IT ++A +G+ + + ++ + S ++G+N ++FD N R +
Sbjct: 62 ITNERAQAEGLDPRVGLEQLAAKLVSYLS-EGAPLVGFN-VQFDVTLLENELRRYGLPTV 119
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHD 176
G + ++ + +W G KL DL GI H
Sbjct: 120 A-ERLGGRFAPIVDPLV-----LDRELDRW---RKGKR--KLVDLLEVYGIAVDPDELHQ 168
Query: 177 AKADVYATLALVWLIREKKPKL 198
+ DV TL+L+ + K P+L
Sbjct: 169 SDVDVSMTLSLLQAMVRKYPQL 190
>gi|30248106|ref|NP_840176.1| oligoribonuclease [Nitrosomonas europaea ATCC 19718]
gi|37999372|sp|Q82Y15|ORN_NITEU RecName: Full=Oligoribonuclease
gi|30179991|emb|CAD83986.1| Exonuclease [Nitrosomonas europaea ATCC 19718]
Length = 181
Score = 54.0 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/199 (20%), Positives = 65/199 (32%), Gaps = 34/199 (17%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
+N+ + D E G + DR + A V D Q + V DD L D
Sbjct: 5 SNNLIWIDMEMTGLNPGTDRIIEVALVVTDAQLNTLAEAPVLVVHQPDDILNGMDKWNQS 64
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQ--FFSVP-NTCIIGYNNIRFDDYYSRNIFYRNF 114
G + K + EAE R+ VP T + N+I D R R+
Sbjct: 65 THGKSGLIDKVKTSILSEAEVESRMLAFLELHVPAGTSPMCGNSICQD----RRFLARSM 120
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
S+ + + D+ + + P+ Q G
Sbjct: 121 --PKLESYFHYRN-LDVSTLKELAKRWKPEITQ--------------------GFNKQGK 157
Query: 175 HDAKADVYATLALVWLIRE 193
H+A AD+Y ++ + R+
Sbjct: 158 HEALADIYDSIEELKYYRQ 176
>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC
3773]
Length = 1437
Score = 54.0 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 30/193 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV +D ET G D+ + + V+ Q ++ + + +T I
Sbjct: 419 FVAFDLETTGLSAVTDKIIELSAVK--MQLGNVVDQFSEY---INPGFPLSEFTTELTSI 473
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + E++ +R + +IG+N + FD + N Y +
Sbjct: 474 T-DSMVANADPESDVIQRFRDWVGD--AVLIGHN-VTFDIGFM-NAAYARYQKPAI---- 524
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GN D L R +Y PD S++L +A I AH A D
Sbjct: 525 -GNPVIDTLPFTRWLY---PD----------YKSYRLGTIAKRFNINLEQAHRAIFDSET 570
Query: 184 TLALV-WLIREKK 195
T + L++E K
Sbjct: 571 TGHIAWRLMKEAK 583
>gi|326444059|ref|ZP_08218793.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
Length = 285
Score = 53.6 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 30/198 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGITPQ 66
+D ET G D R A V A +A I GIT +
Sbjct: 56 FDLETTGTDPREARIVTAAVVEARA-----GEPVRRRTWLADPGVRIPAQASAIHGITSE 110
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFD-----DYYSRNIFYRNFYDSY 118
+A +G E + + ++ YN FD R
Sbjct: 111 RAAAEGRPAREVADEVAAELCGYWARGVPVVAYNA-AFDLSLLAAEIRRYGL------PS 163
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
G ++D A G + L+ ++ G+ +AHDA
Sbjct: 164 LSDRLGGRPTGPVIDPYTIDRAVD-------RYRKGKRT--LEAVSAEYGVPLEDAHDAT 214
Query: 179 ADVYATLALVWLIREKKP 196
AD A + + + + P
Sbjct: 215 ADALAAVRVAGALALRHP 232
>gi|163857665|ref|YP_001631963.1| putative exonuclease [Bordetella petrii DSM 12804]
gi|163261393|emb|CAP43695.1| putative exonuclease [Bordetella petrii]
Length = 177
Score = 53.6 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 65/188 (34%), Gaps = 35/188 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F + D ET G A +FA V V IE + +P P +TGIT
Sbjct: 8 FAVADLETTGLSTASCEILEFAAVHVGPD-GAIEREFSQVVR-TRGTVP-PFITRLTGIT 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ G+ AE F + + ++N FD + + +
Sbjct: 65 QAEVDGHGIPVAEAFSAFLAFLADAP---VFFHNASFDCRFLQAAAEHTGL-PFA----- 115
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA----HDAKAD 180
N+ L + R WP S KLQ LA HV A H A AD
Sbjct: 116 -NATHCTLQLARQA---------WPE----LPSHKLQVLA-----RHVGAADPTHRALAD 156
Query: 181 VYATLALV 188
V +T+A+
Sbjct: 157 VRSTVAVA 164
>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
14863]
gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
14863]
Length = 1475
Score = 53.6 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 33/220 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G D + VR E ++S + F +P +P PE +T IT
Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGG-EIVDSFQSF-VRPTK-PVP-PEVQKLTNIT 509
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P +G EA + + FF I+ +N +FD + R +R Y + N
Sbjct: 510 PDML--EGAPEA--AEALRAFFQFVGDAIVVAHNAQFDYSFLRY--HRQKY--LGEEFAN 561
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY-A 183
+LD + A P S L L + V+ H A AD A
Sbjct: 562 P-----VLDTLTLARAVLPH----------MRSHSLAALTKELQVPLVDHHRADADAKTA 606
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
+ L+ L+ E + + N+L K I+++ + P
Sbjct: 607 AMVLMKLLERA-----EGVETVADLNRLTKGINVEQLRPY 641
>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
12042]
gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
12042]
Length = 1451
Score = 53.6 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 47/229 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI---T 61
+V+YD ET G + D +F V ++R +I+ T+ F KP P P FI T
Sbjct: 399 YVVYDLETTGLSCSFDHIIEFGAVVIERG--EIKETKQLFVKP-----PVPINAFISEKT 451
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + AE ++ + F ++ +N FD + R
Sbjct: 452 NITNEDV-AQAKPFAEVAQELVDFIGDK---VLVAHNATFDYNFLNEELKRIGMAPLT-- 505
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDA-- 177
N D LD+ RA+++ S++L ++A I + AH A
Sbjct: 506 ----NPVVDTLDLARALHSDRR-------------SYRLGNIARHYRITYDEEVAHRADY 548
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
ADV A++ ++ +I+E R + L ++Q+ V V
Sbjct: 549 DADVLASVFML-MIKEC---------KDRGAQTVADLQNLQDKKAFVKV 587
>gi|282890349|ref|ZP_06298877.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499731|gb|EFB42022.1| hypothetical protein pah_c016o062 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 249
Score = 53.6 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 29/206 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
FV D ET G DV DR + A R + +E E + P PE+ I
Sbjct: 8 TFVCIDCETTGLDVHADRIIEVAVARFTFD-QILEQFESL---INPEC-PIPESSIQIHH 62
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + D + +I +T I+G+ + FD R
Sbjct: 63 IT-AEMVADKPPITQVIPQILDAV-RSHT-IVGHGVL-FDIELIAVAAERAGIPCSIRQ- 117
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N D L + R + L+ L + I+ AH A +DV
Sbjct: 118 ---NPYLDTLRLARLY--------------GESPINSLEQLRMHFNIQFEGAHRAMSDVL 160
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNK 208
+ + + ++ K + L+ +K
Sbjct: 161 VNIEVFKHLAKRY-KTTDNLFQILSK 185
>gi|302541826|ref|ZP_07294168.1| putative DNA polymerase III epsilon subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302459444|gb|EFL22537.1| putative DNA polymerase III epsilon subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 239
Score = 53.6 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/211 (21%), Positives = 71/211 (33%), Gaps = 30/211 (14%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G D R A V V E I E A +P P +AV + GIT +
Sbjct: 11 FDLETTGTDPRTARIVTAAVVEVRGG-EPIGRHEW----LAAPEVPIPDDAVAVHGITNE 65
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+A G E + I ++ YN FD R+ S
Sbjct: 66 RAAA-GRPIREVADEIADVLVAHWRAGAPVVAYNA-AFDLSLLAAELDRHGLRSLG-ERL 122
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
G ++D A G + L+ + G+ H AH+A AD A
Sbjct: 123 GGAPTGPVVDPYTIDRAVD-------RYRKGKRT--LEAVCGEYGVAHERAHEAGADALA 173
Query: 184 TLALVWLIREKKP-----KLFEYLYDYRNKN 209
+ + + E+ +L++ +K
Sbjct: 174 AVRVACALAERHREVAGLELWD----LHHKQ 200
>gi|59800509|ref|YP_207221.1| oligoribonuclease [Neisseria gonorrhoeae FA 1090]
gi|194097641|ref|YP_002000679.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
gi|239998172|ref|ZP_04718096.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
gi|240013354|ref|ZP_04720267.1| oligoribonuclease [Neisseria gonorrhoeae DGI18]
gi|240015799|ref|ZP_04722339.1| oligoribonuclease [Neisseria gonorrhoeae FA6140]
gi|240079936|ref|ZP_04724479.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
gi|240112143|ref|ZP_04726633.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
gi|240114889|ref|ZP_04728951.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
gi|240117093|ref|ZP_04731155.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
gi|240120427|ref|ZP_04733389.1| oligoribonuclease [Neisseria gonorrhoeae PID24-1]
gi|240122729|ref|ZP_04735685.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
gi|240124920|ref|ZP_04737806.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
gi|240127431|ref|ZP_04740092.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
gi|254492949|ref|ZP_05106120.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
gi|260441295|ref|ZP_05795111.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
gi|268594024|ref|ZP_06128191.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
gi|268596076|ref|ZP_06130243.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
gi|268598201|ref|ZP_06132368.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
gi|268600546|ref|ZP_06134713.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
gi|268602779|ref|ZP_06136946.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
gi|268681328|ref|ZP_06148190.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
gi|268683499|ref|ZP_06150361.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
gi|268685805|ref|ZP_06152667.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
gi|291044651|ref|ZP_06570360.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
gi|293397760|ref|ZP_06641966.1| oligoribonuclease [Neisseria gonorrhoeae F62]
gi|81311266|sp|Q5FAH8|ORN_NEIG1 RecName: Full=Oligoribonuclease
gi|59717404|gb|AAW88809.1| putative oligo ribonuclease [Neisseria gonorrhoeae FA 1090]
gi|193932931|gb|ACF28755.1| oligoribonuclease [Neisseria gonorrhoeae NCCP11945]
gi|226511989|gb|EEH61334.1| oligoribonuclease [Neisseria gonorrhoeae 1291]
gi|268547413|gb|EEZ42831.1| oligoribonuclease [Neisseria gonorrhoeae 35/02]
gi|268549864|gb|EEZ44883.1| oligoribonuclease [Neisseria gonorrhoeae FA19]
gi|268582332|gb|EEZ47008.1| oligoribonuclease [Neisseria gonorrhoeae MS11]
gi|268584677|gb|EEZ49353.1| oligoribonuclease [Neisseria gonorrhoeae PID18]
gi|268586910|gb|EEZ51586.1| oligoribonuclease [Neisseria gonorrhoeae PID1]
gi|268621612|gb|EEZ54012.1| oligoribonuclease [Neisseria gonorrhoeae PID332]
gi|268623783|gb|EEZ56183.1| oligoribonuclease [Neisseria gonorrhoeae SK-92-679]
gi|268626089|gb|EEZ58489.1| oligoribonuclease [Neisseria gonorrhoeae SK-93-1035]
gi|291011545|gb|EFE03541.1| oligoribonuclease [Neisseria gonorrhoeae DGI2]
gi|291611706|gb|EFF40775.1| oligoribonuclease [Neisseria gonorrhoeae F62]
gi|317163462|gb|ADV07003.1| oligoribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
Length = 187
Score = 53.6 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +DD L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDDLLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|332877643|ref|ZP_08445386.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332684392|gb|EGJ57246.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 258
Score = 53.6 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
++ +D ET G D+ DR + + ++V + ++ + P +P P A
Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGN--KESKTWLVNPT---IPIPAMASA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GIT +K + + E +++IH + + GYN+ RFD R D
Sbjct: 60 VHGITDEKVANEPTFK-ELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAGVD--- 113
Query: 120 WSWDNGNS-RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHV 172
+D GN D+ + K++ L+ A G + +
Sbjct: 114 --FDLGNRVTVDIQTIFH----------------------KMEQRTLSAAYKFYCGKDLL 149
Query: 173 NAHDAKADVYATLALVW 189
AH A AD AT ++
Sbjct: 150 EAHTAAADTNATYEILK 166
>gi|94676725|ref|YP_589014.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|172046199|sp|Q1LSQ0|ORN_BAUCH RecName: Full=Oligoribonuclease
gi|94219875|gb|ABF14034.1| oligoribonuclease [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 184
Score = 53.6 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 34/191 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
++ + D E G + DR + A + D I V +++ L + + I
Sbjct: 5 HNLIWIDLEMTGLNPEQDRILEIATLITDANLNIIAEGPVLAIHQSEEQLKLMNTWNIRI 64
Query: 61 T--GITPQKALRDGVVEAEFSRRIHQFFSVPNTCI---IGYNNIRFDDYYSRNIFYRNFY 115
+K + + E + + F I N+I D R YR
Sbjct: 65 HTANGLIEKVRKSTLNEETAAAQTIAFLQEWVPAGKSPICGNSISQD----RRFLYRYM- 119
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
S+ + D+ + + P + GI+ N+H
Sbjct: 120 -PILESYFHY-RCLDVSTLQELARRWKPKIMA--------------------GIKKKNSH 157
Query: 176 DAKADVYATLA 186
A D+ ++A
Sbjct: 158 KALDDIRESVA 168
>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
Length = 1459
Score = 53.6 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V +D ET G +F V +++ + + FF KP +TGI
Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLK-VGEVTQFFIKPQAKI--GAFTTELTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
T Q +G+ + +RI+ +N +FD + + F N
Sbjct: 481 TQQMLDSEGLSIKDGLQRIYDCLDGKVAIA---HNAKFDFNFLKEQFRLNNVP 530
>gi|86137282|ref|ZP_01055859.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Roseobacter sp. MED193]
gi|85825617|gb|EAQ45815.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Roseobacter sp. MED193]
Length = 484
Score = 53.6 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 47/210 (22%), Positives = 65/210 (30%), Gaps = 43/210 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEA-VFI 60
F ++D ET G D Q VRV P P PEA +
Sbjct: 277 FAVFDTETTGLLPHKDDIVQIGAVRV---LNGRLIEGEELNTLVDPGR---PIPEASTRV 330
Query: 61 TGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
G++ A+ G + AE + H F+ + +N FD + R +
Sbjct: 331 HGVS--TAMVQGAPDIAEAAAEFH-LFATDAVIVA--HNAPFDMAFLRRHAKASGLA--- 382
Query: 120 WSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--H 175
WD +LD + G P L L I A H
Sbjct: 383 ---------WDHPILDTVLLSAVLF--GASVPHT--------LDALCERLDITIPPALRH 423
Query: 176 DAKADVYAT-LALVWLIREKKPKLFEYLYD 204
A D AT ALV +I + + F L
Sbjct: 424 TALGDAQATACALVQMIPMLQARGFNSLLQ 453
>gi|307327637|ref|ZP_07606822.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
gi|306886749|gb|EFN17750.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
Length = 254
Score = 53.6 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 70/194 (36%), Gaps = 22/194 (11%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D+ DR A V ++ + + EA I GI+ ++
Sbjct: 11 FDLETTGIDIESDRIVTAALVFLEPDGRVSDERTWM---LDPGVVIPEEAAAIHGISTEQ 67
Query: 68 ALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A + GV AE S + Q V +I N R+D R+
Sbjct: 68 ARKHGVPAGPAVAEISTAVAQLLRVGTPLVI--MNARYDLSLLDRECRRHQVAPLSARQ- 124
Query: 124 NGNSRWDLLD-VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
G ++D ++ +A G + LQ L G+ +AHDA++D
Sbjct: 125 -GARLHPVIDPLVLDKHADRY--------RKGRRT--LQALCAHYGVPLDSAHDARSDAV 173
Query: 183 ATLALVWLIREKKP 196
A + I E+ P
Sbjct: 174 AAARVARRIGEEHP 187
>gi|227497246|ref|ZP_03927486.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
15434]
gi|226833294|gb|EEH65677.1| DNA polymerase III subunit epsilon [Actinomyces urogenitalis DSM
15434]
Length = 249
Score = 53.6 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 17/199 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
F+ +D ET G D + DR A V + + + AD +P P A + GI
Sbjct: 17 FLGFDTETTGVDPSQDRLVTAALVMRGPRHGEGTRRQEVVTWLADPGVPIPPGASAVHGI 76
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ ++A +G + + Q + T ++ +N FD + R+ +
Sbjct: 77 STERAQAEGRPAPQVLEEVAQRLAQAMGAGTPVVAFNA-SFDLTLMEHELARHGLATL-R 134
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKA 179
G P + +L + G++ A H A+
Sbjct: 135 ERLGG----------PLAPVLDPLVLDRAVDRFRKGKRRLDAMCQVYGVQVDEALHTAEV 184
Query: 180 DVYATLALVWLIREKKPKL 198
DV ATL ++ + P+L
Sbjct: 185 DVAATLDVLEALAHAYPEL 203
>gi|4929697|gb|AAD34109.1|AF151872_1 CGI-114 protein [Homo sapiens]
Length = 205
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 7 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 67 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 119
>gi|62901864|gb|AAY18883.1| CGI-114 [synthetic construct]
Length = 229
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 31 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 90
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 91 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 143
>gi|325661635|ref|ZP_08150259.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472162|gb|EGC75376.1| hypothetical protein HMPREF0490_00993 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 238
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 44/209 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +V +D ET G D + V+V + + F KPA++ P I
Sbjct: 1 MIKTYVAFDLETTGLSEERDSIIEIGAVKV-TDGKVTDRFMEFL-KPAEEI--SPMITQI 56
Query: 61 TGITPQK-ALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT + A E +F + ++G+N I FD F + +
Sbjct: 57 TGITNEMVAHARNTKEVIDDFMGFCGEE------VLLGHN-ILFD-----YKFMKRYACK 104
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y+ S++ D L + R ++ S L+ L + I++ AH A
Sbjct: 105 YQHSFE--RRGIDTLKIARKVH-------------KDLESRSLEALCVHYQIKNDAAHRA 149
Query: 178 KADVYATLALVWLIR-------EKKPKLF 199
D AT L EK+P LF
Sbjct: 150 YHDALAT---AKLYHCLGHYFEEKEPNLF 175
>gi|150398789|ref|YP_001322556.1| exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
SB]
gi|150011492|gb|ABR53944.1| Exonuclease RNase T and DNA polymerase III [Methanococcus vannielii
SB]
Length = 189
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V D ET G + AQ + + D + ++ ++ + A I G+T
Sbjct: 2 YVFLDTETTGLHPG--QIAQLSYLVTDEELNIKKAFNQYYS--VEHM--SRSAARIHGLT 55
Query: 65 PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSR 107
Q L + F I + S + IIG+N I FD + +
Sbjct: 56 -QDILEELSSGLVFEDTIKEVLSDLKYSVIIGHN-ISFDIRFLK 97
>gi|300173471|ref|YP_003772637.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
gi|299887850|emb|CBL91818.1| ATP-dependent helicase DinG [Leuconostoc gasicomitatum LMG 18811]
Length = 801
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 68/206 (33%), Gaps = 43/206 (20%)
Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQW----EKIESTEVFFCKPADDYLPDPE 56
FV+ D ET G+ V R Q + + ++ E F L D
Sbjct: 4 NETFVVVDLETTGQSVTKGGRIIQIG-----MTFIKQRQIVDHFESF---VNPGQLIDRN 55
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+T I + E E + + + NT II +N + FD Y + F R +
Sbjct: 56 IQQLTHIAQKDVKNAPYFE-ELAPMLQNLLN--NTIIIAHN-VNFDYPYLNDEFRRTGFP 111
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S +D ++ P ++L DL I NAH
Sbjct: 112 ELTSS---------AIDTVQLAQILLPTA----------PGYRLVDLTTYLDITLNNAHR 152
Query: 177 AKADVYATLALVWLIREKKPKLFEYL 202
A AD +AT L KL++
Sbjct: 153 ANADAHAT---ARLFL----KLWQRA 171
>gi|89891036|ref|ZP_01202544.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
bacterium BBFL7]
gi|89516680|gb|EAS19339.1| putative DNA polymerase III, epsilon subunit [Flavobacteria
bacterium BBFL7]
Length = 255
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 47/204 (23%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
+D ET G +++ DR + A +V + + + + +P P A + GI
Sbjct: 9 ICFFDLETTGVNISKDRIVEIAIHKVLPD----GTEKTYTYRVNP-TVPIPAATTAVHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T ++D E + IH + + G+N+ RFD R D ++
Sbjct: 64 T-DDMVKDEPTFKELAHEIHNIIKDSD--LAGFNSNRFDIPLLAEEMLRAGVD-----FE 115
Query: 124 NGNSRW-DLLDVM--------RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
GN D+ ++ A Y F D +DL NA
Sbjct: 116 MGNRNAIDVQNIFHKMEQRTLVAAYKFYCD----------------KDLT--------NA 151
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A+AD AT ++ ++ P L
Sbjct: 152 HSAEADTIATYEVLKGQLDRYPDL 175
>gi|332291494|ref|YP_004430103.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
4H-3-7-5]
gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus
4H-3-7-5]
Length = 1463
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 51/205 (24%), Positives = 75/205 (36%), Gaps = 31/205 (15%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + R Q A D IE + KP +P
Sbjct: 2 YLIFDTETTGLPKNWNAPLTDSDNWPRAIQIAWQLHDEMGNVIEHQDYLI-KPDGFDIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ A RDG+ +E + + S ++G N+ FD F+R
Sbjct: 61 -DAERIHGISTALAERDGIELSEVLSKFNIALSKSK-YVVG-QNVGFDTNIMGAEFHRLN 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+ L V+ + Q P G FKL L + G
Sbjct: 118 IGNDLQE----------LPVLDTCTEKTATLCQLPGGRGGK--FKLPTLTELHKHLFGEG 165
Query: 171 HVNAHDAKADVYATLAL-VWLIREK 194
AH+A ADV AT + LIR++
Sbjct: 166 FGEAHNATADVEATTRCFLELIRQR 190
>gi|213965283|ref|ZP_03393480.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
gi|213952135|gb|EEB63520.1| DNA polymerase III, epsilon subunit [Corynebacterium amycolatum
SK46]
Length = 529
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 56/282 (19%), Positives = 90/282 (31%), Gaps = 58/282 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAV 58
FV+ D ET G D + ++ + I + F + D
Sbjct: 20 NTTFVVVDLETTGLKAKNDHIIEIGAIKTRGG-KTIGTFSSFIDPGMEIPDHITS----- 73
Query: 59 FITGIT---PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+TGIT + A + G V +F F+ + + +N +FD + R
Sbjct: 74 -LTGITTADVETAPQLGTVITQFL-----EFARGSVWVA--HNAKFDIGFLRQACTDLGL 125
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D W + S D L + R + SFKL LA G + AH
Sbjct: 126 D-----WPSP-SVVDTLTLARRV-----------LDRSQVGSFKLSQLARYVGSPNRPAH 168
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRS 235
A D AT+ ++ + E+ + ++Q + LVH S
Sbjct: 169 RALDDAIATVDVLHYLMER-----------------LAVYEVQTASELVHYSPTVAPEVR 211
Query: 236 NTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRL 277
+A A H V D ++ L +RL
Sbjct: 212 AKRHLADGAPHTP---GVYVFRSRND-DPLYIGTALDLRRRL 249
>gi|261879422|ref|ZP_06005849.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
bergensis DSM 17361]
gi|270333990|gb|EFA44776.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
bergensis DSM 17361]
Length = 287
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +I+D ET G D+A DR Q + ++VD Q + + F P + +P P +
Sbjct: 5 LTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNE--ERKSLFVNP-EKPIP-PFVQEL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SYR 119
T IT ++D + ++ + + F+ G+N+ RFD F R D ++
Sbjct: 61 THIT-DDMVKDAPTFKQIAKSLQETFA--GCDFAGFNSNRFDVPMLAEEFLRAGVDFDFQ 117
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD-DGATSFKLQDLALANGIEHVNAHDAK 178
L+D + P + R G K++D AH A
Sbjct: 118 R-----CR---LIDAQNIFHKMEPRNLAAAYRFYTGN---KMED--------DFQAHRAD 158
Query: 179 ADVYAT 184
D AT
Sbjct: 159 EDTEAT 164
>gi|154487101|ref|ZP_02028508.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
L2-32]
gi|154084964|gb|EDN84009.1| hypothetical protein BIFADO_00941 [Bifidobacterium adolescentis
L2-32]
Length = 256
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 65/188 (34%), Gaps = 34/188 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
M +++ D ET G + DR + +RV + + + P PE +
Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRVRN-----GRPVKRYSQLINPQRPLPEEITR 136
Query: 60 ITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ G+T V+ +F R I N +IG+N FD + R
Sbjct: 137 LNGLTDADLRNQPTVDQVLPDFIRFIG------NDTLIGHNINEFDAAFLLANTTRLGMR 190
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
GN D L + RA+Y P+ P +L D+ GI +H
Sbjct: 191 HI------GNKTIDTLPLDRALY---PEE---PKH-------RLVDIIRRFGIAQTESHR 231
Query: 177 AKADVYAT 184
A D T
Sbjct: 232 AADDALQT 239
>gi|295693033|ref|YP_003601643.1| ATP-dependent DNA helicase ding [Lactobacillus crispatus ST1]
gi|295031139|emb|CBL50618.1| ATP-dependent DNA helicase DinG [Lactobacillus crispatus ST1]
Length = 926
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
+ F + D ET G QF + + + +++ + + P P++
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCAII--KNLKVVKT----YSFLIN---PHREIPQS 58
Query: 58 VF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
V +TGI Q + + ++ +I + NT + +N + FD + ++ Y+
Sbjct: 59 VVNLTGIHDQDVAKQRDFDY-YAPKITKILQ--NTVFVAHN-VDFDLPFLNYELVQHGYE 114
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N D +++ + + P+ S+KL DL GI+H++ H
Sbjct: 115 ALT------NKAIDTVELAKIAF---------PT----FPSYKLSDLTTQLGIKHLDPHK 155
Query: 177 AKADVYATLALVWLIREK 194
A +D Y T L+ I K
Sbjct: 156 ADSDAYGTAVLLLEIFNK 173
>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
Length = 1358
Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 50/203 (24%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G DR + +V D + +I + V + L + ITG
Sbjct: 341 SFVVFDLETTGLSRYRDRITEIGACKVIDGKICEIYNELV-----NPEMLIPEKITEITG 395
Query: 63 ITPQKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT Q +E EF + + ++G N FD + R R D
Sbjct: 396 ITNQMVESCPKIEEVLPGFLEFCQ---------GSILVG-QNTDFDVGFVRENCTRLGLD 445
Query: 117 --SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
D L + RA++A F L +A I N
Sbjct: 446 FNPL---------YLDTLPMARALFA-------------DMKKFSLDKIARKLEIPAFNH 483
Query: 175 HDAKADVYAT----LALVWLIRE 193
H A D AT + + +I +
Sbjct: 484 HRASDDARATAQIFIKMFKMIMK 506
>gi|323144851|ref|ZP_08079420.1| conserved domain protein [Succinatimonas hippei YIT 12066]
gi|322415376|gb|EFY06141.1| conserved domain protein [Succinatimonas hippei YIT 12066]
Length = 410
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 29 RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV 88
R D + E+ CK + LP P ++ + LRDG+ E++F + F
Sbjct: 33 RTDANLNPLSEYEILRCKLPYNALPSPAYLYTLDLNVD-LLRDGICESKFINCLKSHFDN 91
Query: 89 PNTCIIGYN 97
N ++ ++
Sbjct: 92 KNLTVVTFS 100
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 20/169 (11%)
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTN--LRDRFKAIYNKPYTSSSQDVDSQ 359
++ P+ + ++ + L++L+ + + + Y + + D
Sbjct: 259 MIAPLSILTPDRLQKLHFNLSNT---LSILKSSSEDLIFNTDTLPYKDKFFMNLNAADMA 315
Query: 360 LYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQD 419
Y+ D + + T + LS F YR NF TL+++E
Sbjct: 316 FYES-IGKKDPHSLYPNMETDSQVLSNH------------LFLYRCENFQGTLTDQELNK 362
Query: 420 WLEHRKKMLTRSRIEEYKNKLQSLSGE-YKGDEGKEGLINALYEYLQWV 467
+ E+ K R + + + + L+ + DE I + + + +
Sbjct: 363 YYEYCVKK-MRKDLPVFLKEAKILANNLEENDEAGLKRIRNIIRFAEEL 410
>gi|256843260|ref|ZP_05548748.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
crispatus 125-2-CHN]
gi|256614680|gb|EEU19881.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
crispatus 125-2-CHN]
Length = 926
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
+ F + D ET G QF + + + +++ + + P P++
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCAII--KNLKVVKT----YSFLIN---PHREIPQS 58
Query: 58 VF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
V +TGI Q + + ++ +I + NT + +N + FD + ++ Y+
Sbjct: 59 VVNLTGIHDQDVAKQRDFDY-YAPKITKILQ--NTVFVAHN-VDFDLPFLNYELVQHGYE 114
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N D +++ + + P+ S+KL DL GI+H++ H
Sbjct: 115 ALT------NKAIDTVELAKIAF---------PT----FPSYKLSDLTTQLGIKHLDPHK 155
Query: 177 AKADVYATLALVWLIREK 194
A +D Y T L+ I K
Sbjct: 156 ADSDAYGTAVLLLEIFNK 173
>gi|134045738|ref|YP_001097224.1| exonuclease, RNase T and DNA polymerase III [Methanococcus
maripaludis C5]
gi|132663363|gb|ABO35009.1| Exonuclease, RNase T and DNA polymerase III [Methanococcus
maripaludis C5]
Length = 191
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 16/182 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V D ET G + AQ + + D + ++ D A + G+T
Sbjct: 2 YVFLDTETTGLHPG--QIAQLSYLVTDEDLNLKKVFNQYY--LVDHM--SRSAAKVHGLT 55
Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
L +G+ + + + IIG+N I FD + + F R
Sbjct: 56 MDILDELSNGMTFEDTVDEVRDDLED--SVIIGHN-ISFDIRFLKAEFER--LGPEYIPK 110
Query: 123 DNGNSRWDLLDVMRA---IYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D + + + + P ++ + L+ G V HDA+
Sbjct: 111 DKFCTMFHFTPICKLPGQKRYKRPKLVELMEFLEQCPHEGLEFTKKTYGCSDVGFHDARY 170
Query: 180 DV 181
D
Sbjct: 171 DT 172
>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 5 str. ATCC 27817]
gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 8 str. ATCC 27618]
gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 5 str. ATCC 27817]
gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
urealyticum serovar 8 str. ATCC 27618]
Length = 1442
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 32/194 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T Q+ + D + E +I + F N ++ +N I FD + +
Sbjct: 462 TNINQEMVNDAIDEKTALLKIKEIFD--NHILVAHNGISFDINFINQRLLKWGLKPL--- 516
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179
N + +D + A +P S +L + +++ + AH A
Sbjct: 517 -KNPS-----IDTLMISRAINP-----------FKSHRLGAICKKYEVDYNDEVAHRADY 559
Query: 180 DVYATLALVWLIRE 193
D + +++
Sbjct: 560 DAMVLADVFKIMKN 573
>gi|126172800|ref|YP_001048949.1| oligoribonuclease [Shewanella baltica OS155]
gi|153002280|ref|YP_001367961.1| oligoribonuclease [Shewanella baltica OS185]
gi|160877004|ref|YP_001556320.1| oligoribonuclease [Shewanella baltica OS195]
gi|304410908|ref|ZP_07392525.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
OS183]
gi|307304921|ref|ZP_07584671.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
BA175]
gi|166216585|sp|A3D017|ORN_SHEB5 RecName: Full=Oligoribonuclease
gi|166216586|sp|A6WSV9|ORN_SHEB8 RecName: Full=Oligoribonuclease
gi|125996005|gb|ABN60080.1| Exonuclease, RNase T and DNA polymerase III [Shewanella baltica
OS155]
gi|151366898|gb|ABS09898.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
OS185]
gi|160862526|gb|ABX51060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
OS195]
gi|304350805|gb|EFM15206.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
OS183]
gi|306912323|gb|EFN42747.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
BA175]
gi|315269207|gb|ADT96060.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
OS678]
Length = 181
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 50/211 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N+ + D E G + +DR + A + D++ I V +DD L A
Sbjct: 6 NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVL----AAMDDW 61
Query: 60 ---ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS-R 107
G + + EA+ + F C N+I D + R
Sbjct: 62 NQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCG---NSIGQDRRFLNR 118
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+ R D + + D+ + + +SP+ +
Sbjct: 119 YM--RELEDYFHY------RNVDVSTIKELVKRWSPETMA-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G + N H A D+ ++A + R K K+
Sbjct: 151 GFKKQNTHQALQDIQESIAELQYYRSKVFKI 181
>gi|293380924|ref|ZP_06626958.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus crispatus 214-1]
gi|290922499|gb|EFD99467.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus crispatus 214-1]
Length = 926
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
+ F + D ET G QF + + + +++ + + P P++
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCAII--KNLKVVKT----YSFLIN---PHREIPQS 58
Query: 58 VF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
V +TGI Q + + ++ +I + NT + +N + FD + ++ Y+
Sbjct: 59 VVNLTGIHDQDVAKQRDFDY-YAPKITKILQ--NTVFVAHN-VDFDLPFLNYELVQHGYE 114
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N D +++ + + P+ S+KL DL GI+H++ H
Sbjct: 115 ALT------NKAIDTVELAKIAF---------PT----FPSYKLSDLTTQLGIKHLDPHK 155
Query: 177 AKADVYATLALVWLIREK 194
A +D Y T L+ I K
Sbjct: 156 ADSDAYGTAVLLLEIFNK 173
>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 1452
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 36/188 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + FV++D ET G D+ + V++ E I+ F P D +P
Sbjct: 435 LDDTFVVFDLETTGFSPINDKIIEIGAVKIKSG-EIIDKFSCF-VNPKRD-IPY------ 485
Query: 61 TGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT Q D V +A+ I F T ++ +N FD + + R+
Sbjct: 486 -KIT-QLTSIDNNMVKDADVIENILPKFMEFCEGTVVVAHNA-AFDTGFIKKNC-RDL-- 539
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N N +LD + P+ + KL +A GI N H
Sbjct: 540 -------NINFDLPILDTVTLCRFLYPELKKV----------KLNIVAKFLGISLENHHR 582
Query: 177 AKADVYAT 184
A D AT
Sbjct: 583 AVDDAKAT 590
>gi|227878664|ref|ZP_03996579.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
gi|256850383|ref|ZP_05555811.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
gi|262046469|ref|ZP_06019431.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
crispatus MV-3A-US]
gi|227861728|gb|EEJ69332.1| ATP-dependent DNA helicase [Lactobacillus crispatus JV-V01]
gi|256712780|gb|EEU27773.1| ATP-dependent DNA helicase [Lactobacillus crispatus MV-1A-US]
gi|260573340|gb|EEX29898.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
crispatus MV-3A-US]
Length = 926
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
+ F + D ET G QF + + + +++ + + P P++
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCAII--KNLKVVKT----YSFLIN---PHREIPQS 58
Query: 58 VF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
V +TGI Q + + ++ +I + NT + +N + FD + ++ Y+
Sbjct: 59 VVNLTGIHDQDVAKQRDFDY-YAPKITKILQ--NTVFVAHN-VDFDLPFLNYELVQHGYE 114
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N D +++ + + P+ S+KL DL GI+H++ H
Sbjct: 115 ALT------NKAIDTVELAKIAF---------PT----FPSYKLSDLTTQLGIKHLDPHK 155
Query: 177 AKADVYATLALVWLIREK 194
A +D Y T L+ I K
Sbjct: 156 ADSDAYGTAVLLLEIFNK 173
>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum E3 str. Alaska E43]
Length = 1452
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 36/188 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + FV++D ET G D+ + V++ E I+ F P D +P
Sbjct: 435 LDDTFVVFDLETTGFSPINDKIIEIGAVKIKSG-EIIDKFSCF-VNPKRD-IPY------ 485
Query: 61 TGITPQKALRDG--VVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT Q D V +A+ I F T ++ +N FD + + R+
Sbjct: 486 -KIT-QLTSIDNNMVKDADVIENILPKFMEFCEGTVVVAHNA-AFDTGFIKKNC-RDL-- 539
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N N +LD + P+ + KL +A GI N H
Sbjct: 540 -------NINFDLPILDTVTLCRFLYPELKKV----------KLNIVAKFLGISLENHHR 582
Query: 177 AKADVYAT 184
A D AT
Sbjct: 583 AVDDAKAT 590
>gi|288932698|ref|YP_003436758.1| DNA polymerase III subunit epsilon [Ferroglobus placidus DSM 10642]
gi|288894946|gb|ADC66483.1| DNA polymerase III, epsilon subunit [Ferroglobus placidus DSM
10642]
Length = 200
Score = 53.3 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 42/228 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
F + D ET G +V D A + +D + + KP + ++V GI
Sbjct: 6 FAVVDVETTGLNVKKDEIISIAIIPMD-GLKILFSEAYYRILKPRRFKI---DSVKYHGI 61
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TP + + + E I + + I+GY +I D + + F
Sbjct: 62 TP-RMVEEAPTFCEVKEEILEKLNE--RIIVGY-SINLDIEFLKKSF-------KECEVV 110
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D+ DV + + D ++ + L+DLA G++ H A +D Y
Sbjct: 111 FECKYVDIADVEKLVGRLFGDYMKDVT---------LEDLAKKYGVDVAYRHSALSDAYI 161
Query: 184 T-----LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM--TPLV 224
T + L+ L++ Y R + + I ++ PL+
Sbjct: 162 TAQIFQMQLLRLLK----------YGLRKFEDVLRAIKKEDFYDKPLM 199
>gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
18811]
gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
gasicomitatum LMG 18811]
Length = 1437
Score = 53.3 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 34/195 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V +D ET G D+ + + V+ Q IE + + P + F T +
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVK--MQLGNVIEKFSEY---INPGF---PLSDFTTKL 470
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + E +R Q+ +IG+N + FD + + R +S
Sbjct: 471 TSITDTMVAHTDTEENIIKRFRQWVGE--AVLIGHN-VTFDIGFMNAAYARYSQESIT-- 525
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N D L R +Y PD S++L +A I AH A D
Sbjct: 526 ----NPVIDTLPFTRWLY---PD----------YKSYRLGTIAKRFNINLEQAHRAIFDA 568
Query: 182 YATLALV-WLIREKK 195
T + LI+E
Sbjct: 569 ETTGHIAWRLIKEAN 583
>gi|170728503|ref|YP_001762529.1| oligoribonuclease [Shewanella woodyi ATCC 51908]
gi|169813850|gb|ACA88434.1| Exonuclease RNase T and DNA polymerase III [Shewanella woodyi ATCC
51908]
Length = 181
Score = 53.3 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 48/211 (22%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
N+ + D E G + +DR + A + D++ I V +D+ L A
Sbjct: 5 ANNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAEGPVIAIHQSDEQL----AKMDD 60
Query: 60 ----ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSR 107
G + + EA+ +F S C N++ D +
Sbjct: 61 WNKKHHGESGLVDRVRSSQYSEAQAVAMTIEFLSQHVTKGSSPMCG---NSVGQDRRFM- 116
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
Y + + + N D+ V + + P+ + N
Sbjct: 117 -TLYMRELEDFFH-YRN----IDVSTVKELVRRWDPEVM--------------------N 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G + H A D+ ++A + R K K+
Sbjct: 151 GFSKLGTHKALIDIQESIAELQYYRAKVFKI 181
>gi|302773125|ref|XP_002969980.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
gi|300162491|gb|EFJ29104.1| hypothetical protein SELMODRAFT_440920 [Selaginella moellendorffii]
Length = 1208
Score = 53.3 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/189 (22%), Positives = 57/189 (30%), Gaps = 34/189 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITG 62
+++D ET G A DR +FA R +P +TG
Sbjct: 176 TIIVFDLETTGFRAAGDRIIEFAA----RDLAG-GDRSTISALVNPGRTVPYLI-TAVTG 229
Query: 63 ITPQKALRD--------GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
IT Q + G +F + ++ +N RFD + F
Sbjct: 230 ITNQMVNKPHVPSWKEVGPSIIQFVESRRK--GDEPVILVAHNGKRFDVPFLLKEFQSCG 287
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIY-AFSPDGIQWPSRDDGATSFKLQDLALANGI-EHV 172
W W LD M A G W S KL L A G+
Sbjct: 288 IQVPEW--------WLFLDSMPLAREAKKKFGYNW-------RSLKLSVLHEAYGLHSTE 332
Query: 173 NAHDAKADV 181
AH A ADV
Sbjct: 333 RAHRAMADV 341
>gi|228471317|ref|ZP_04056120.1| exonuclease [Porphyromonas uenonis 60-3]
gi|228306894|gb|EEK16002.1| exonuclease [Porphyromonas uenonis 60-3]
Length = 255
Score = 53.3 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 31/191 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
V +D E G D+ DR + + V + + +P P E+ I GI
Sbjct: 9 LVFFDIEATGLDITNDRIIE----LTILKLMPDGERIVRTRRFNPE-MPIPAESTAIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + GYN+ RFD F R + +
Sbjct: 64 TDDDVRD--CPPFRACAKSLAELID-GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLAMQ 120
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +DV + P + +GA F EH+ AH A+AD A
Sbjct: 121 H-------IDVQTIFHKMEPRTL------EGAVRFYCHR-------EHIGAHGAEADTIA 160
Query: 184 TLA--LVWLIR 192
TL + L +
Sbjct: 161 TLDVLMAQLDK 171
>gi|317407747|gb|EFV87675.1| exonuclease [Achromobacter xylosoxidans C54]
Length = 183
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 60/185 (32%), Gaps = 31/185 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
FV+ D ET G A +FA VRV + E + + +P P +TG
Sbjct: 17 FVVADLETTGLSTASCEILEFAAVRVGAD----GAAEREYAQVVRTRATVP-PFITRLTG 71
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + R GV + F + ++N FD + +
Sbjct: 72 ITEAEVERQGVPVGQAFAAFLDFVEDLP---VFFHNASFDRRFLDAAALQTGLP------ 122
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ A + WP S KL LA G H A ADV
Sbjct: 123 --------FANATHCTLALARRA--WPE----LPSHKLDVLARHVGASEPT-HRALADVR 167
Query: 183 ATLAL 187
T+A+
Sbjct: 168 TTVAV 172
>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 864
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 31/194 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE--VFFCKPADDYLPDPEAVFI 60
N V++D ET G D D + A ++ + ++ + KP E+ +
Sbjct: 498 NKLVVFDVETTGLDTTKDEIIELAALKAGKD-GVVDEFHEYLRNSKPVG------ESFQV 550
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI+ Q L G + F ++G+N + +D N +
Sbjct: 551 HGISDQVLLEQGKPPEKSLASFTNFIDD--CDLVGHN-VNYDITMVENQCKKLLNQDLEL 607
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D +D+ R + P + + L+ L I H A D
Sbjct: 608 HG------YDTVDISRRYF---------PRLEK----YNLESLCEDLQISSKPTHRAMDD 648
Query: 181 VYATLALVWLIREK 194
V AT L+ ++ EK
Sbjct: 649 VEATFELLQILLEK 662
>gi|291513942|emb|CBK63152.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Alistipes shahii WAL 8301]
Length = 255
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
+ +D ET G D A DR + + V+V E+I T + +P+ EA I GI
Sbjct: 9 IIFFDLETTGVDTARDRIVEISMVKVMPDGEEITKTR----RLNPGMHIPE-EASAIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
T R + F G+N+ RFD F R D
Sbjct: 64 TDDDVRD--CPTFAQVARSLEQFIR-GCDFGGFNSNRFDLPVLVEEFLRAGVD 113
>gi|262275580|ref|ZP_06053389.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
gi|262219388|gb|EEY70704.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
Length = 239
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 33/198 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D+ET G D D+ V +I +++ + P E+ I +
Sbjct: 57 DFETSGLDPEQDKVLSMGWV-------EIRQSQIRLSSARHILVNQPVLNGYESARIHHL 109
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P+ GV E ++ I+ + ++ + +R + + W
Sbjct: 110 RPETLRNCGVSEHHAFSQLFDVM--KGKVIVAHGSVIEKRFLARYLTLHYGQINLPLVW- 166
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D L + + W +L + A+G+ AH+A D A
Sbjct: 167 -----LDTLKIEQYREQLRQVCRDW----------RLSSVRAAHGLPDYQAHNALNDAIA 211
Query: 184 TLALVWLIREKKPKLFEY 201
T L + +LF++
Sbjct: 212 T---AELYLAQVHRLFDH 226
>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
parvum serovar 1 str. ATCC 27813]
gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
parvum serovar 1 str. ATCC 27813]
Length = 1442
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I FF KP + + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFFVKPIQEINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T Q+ + + + E +I + F N ++ +N I FD + + +
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL 516
>gi|154505436|ref|ZP_02042174.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
gi|153794279|gb|EDN76699.1| hypothetical protein RUMGNA_02959 [Ruminococcus gnavus ATCC 29149]
Length = 219
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 36/198 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ ++D ET G +D + + V+V ++ T P +P +A + G
Sbjct: 13 PDYTVFDLETTGISANMDDIIEISAVKVKGG--IVQDTFSTLVNPGRH-IPA-QATKVNG 68
Query: 63 ITPQKALRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
IT Q + EF R + + ++G+N FD + YR + ++
Sbjct: 69 ITDQMVSEAPLIREAMTEFLRFVGED------ILVGHNIQSFDMKFI----YREVEELFQ 118
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N D +D + P+ +L DLA GI AH A
Sbjct: 119 ETVSN-----DFIDTLYMARKCLPEL----------KHHRLTDLAEHFGISSKGAHRALN 163
Query: 180 DVYATL----ALVWLIRE 193
D + L ++
Sbjct: 164 DCVMNQKCFEEMAKLQKK 181
>gi|295425759|ref|ZP_06818444.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
gi|295064567|gb|EFG55490.1| DNA polymerase III [Lactobacillus amylolyticus DSM 11664]
Length = 318
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 15/133 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI--TGITPQ 66
D ET G DR + ++V R E ++ + +P A GIT +
Sbjct: 37 DIETTGLSPYRDRVIELGAIKV-RNGEIVDEYSHLVAYDKSNCVP---AFITKLNGITEE 92
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
K + +G+ AE QF IIGYN + FD + + ++ N
Sbjct: 93 KIINEGIPVAEAIHDFRQFIGD--DVIIGYN-VNFDLNFI-YDLAKKYHLPEL-----NN 143
Query: 127 SRWDLLDVMRAIY 139
+ D+L + RA Y
Sbjct: 144 NYVDVLRLARAYY 156
>gi|188997343|ref|YP_001931594.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932410|gb|ACD67040.1| DNA polymerase III, epsilon subunit [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 205
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/221 (19%), Positives = 72/221 (32%), Gaps = 40/221 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F + D ET G + + A ++V+ I KP+ ++P+ +TGI
Sbjct: 10 TFTVVDLETTGLNPKTSEIIEIAAIKVEGS--VITEKFHTLVKPSIGFIPE-HITKLTGI 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSYRW 120
T + +E F H N+ II +N +I F + S + + +
Sbjct: 67 TNPLVIDKPKIEQVFP---HFLEFTKNSIIIAHNAKFDISFLNEASLQLTGKLIQNPVIC 123
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ + PD S L +LA I + H A AD
Sbjct: 124 T-------------LVLANRLFPDL----------KSKSLTNLAYHFNIPYHRKHRALAD 160
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
T L K +Y +++ LI + N
Sbjct: 161 AEVTYELFK-------KFVDY-LQNYKVDKVIDLIRLSNGK 193
>gi|229825431|ref|ZP_04451500.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
49176]
gi|229789994|gb|EEP26108.1| hypothetical protein GCWU000182_00790 [Abiotrophia defectiva ATCC
49176]
Length = 223
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 38/186 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ + ++D ET G D+ + + ++V R + + +P A + G
Sbjct: 15 SDYTVFDLETTGVSPQTDKVIEISAIKV-RNGQTVGEFSSLVNPMRG--IPY-GATRVNG 70
Query: 63 ITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IFYRNFYD 116
IT + V E +F + ++G+N FD + F+R F
Sbjct: 71 ITDEMVADKPVFEKVLGDFLDFVEDD------ILVGHNIHDFDMKFIHRDCEAFFRMFL- 123
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
GN D L + R P +L DLAL I AH
Sbjct: 124 --------GNDYIDTLPIARKC---------LPQ----LGHHRLTDLALYYKISINGAHR 162
Query: 177 AKADVY 182
A D
Sbjct: 163 ALNDCR 168
>gi|326335188|ref|ZP_08201385.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325692718|gb|EGD34660.1| exonuclease [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 273
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
+T +D ET G DV+ DR + + ++V ++ + P +P P A
Sbjct: 21 LTRPICFFDLETTGTDVSKDRIVEISILKVFP--NGSRESKTWLVNPT---IPIPAASTD 75
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI+ K + E +++IH + + GYN+ RFD R D
Sbjct: 76 IHGIS-DKMVAQAPTFKELAKQIHNLIKDSD--LAGYNSDRFDIPLLAEELLRAGVD--- 129
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----EHV 172
+DL + + D T F K++ L+ A
Sbjct: 130 ---------FDLKNRVTV---------------DVQTIFHKMEQRTLSAAYKFYCKKSLD 165
Query: 173 NAHDAKADVYATLALVW 189
NAH A+AD AT ++
Sbjct: 166 NAHSAQADTDATYEILK 182
>gi|189460117|ref|ZP_03008902.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
gi|189433159|gb|EDV02144.1| hypothetical protein BACCOP_00753 [Bacteroides coprocola DSM 17136]
Length = 258
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 70/205 (34%), Gaps = 41/205 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + ++ P PEA
Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNE--ESKTMRVNPEMHI---PEASTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + + D E ++ I + I G+N+ RFD F R D
Sbjct: 60 IHGI-HDEDVADCPTFKEIAKDIARDL--EGADIAGFNSNRFDVPVLVEEFLRAGIDIDL 116
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
+DV + KL+ L+ A G +
Sbjct: 117 TKRK-------FIDVQVIYH-------------------KLEQRTLSAAYKFYCGKNLED 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A+AD AT ++ + P +
Sbjct: 151 AHTAEADTRATYEVLKAQLDHYPDV 175
>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
255-15]
gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum
255-15]
Length = 1431
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 37/224 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G ++ + A V++ D I+ E F +L + +TG
Sbjct: 413 TFVVFDVETTGLSAMYNKIIELAAVKIYDGD--VIDKFEAFA---DPKHLLSATTIDLTG 467
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + E + + +F I+ +N FD + S
Sbjct: 468 ITDEMVRGKPDPE----QVVKEFMDWAGGSILVAHNASFDIGFLNATL---------RSG 514
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++ S ++D + P + +L LA IE H A D
Sbjct: 515 NHEESTLPVIDTLELARVLMPSL----------KNHRLNTLAKRFDIELTQHHRAIYDAE 564
Query: 183 AT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLI--DIQNMTPL 223
AT ++ L++ + +++ + L + + DI P
Sbjct: 565 ATGYLMLKLLQMA-----DEMFNMKTHLSLNREMGKDISRARPY 603
>gi|331084769|ref|ZP_08333857.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410863|gb|EGG90285.1| hypothetical protein HMPREF0987_00160 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 238
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 46/210 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +V +D ET G D + V+V + + F KPA++ P I
Sbjct: 1 MIKTYVAFDLETTGLSEERDSIIEIGAVKV-TDGKVTDRFMEFL-KPAEEI--SPMITQI 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI----IGYNNIRFDDYYSRNIFYRNFYD 116
TGIT + V A ++ + F C +G+N I FD F + +
Sbjct: 57 TGITNEM-----VAHARNTKAVIDDFM--GFCGEEVLLGHN-ILFD-----YKFMKRYAC 103
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
Y+ S++ D L + R ++ S L+ L I++ AH
Sbjct: 104 KYQHSFE--RRGIDTLKIARKVH-------------KDLESRSLEALCAHYQIKNDAAHR 148
Query: 177 AKADVYATLALVWLIR-------EKKPKLF 199
A D AT L EK+P LF
Sbjct: 149 AYHDALAT---AKLYHCLGHYFEEKEPNLF 175
>gi|312978151|ref|ZP_07789895.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus crispatus CTV-05]
gi|310894869|gb|EFQ43939.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus crispatus CTV-05]
Length = 926
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 40/199 (20%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PE 56
+ F + D ET G QF I++ +V + + P P+
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCA-------IIKNRKVVKTYSFLIN---PHREIPQ 57
Query: 57 AVF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+V +TGI Q + + ++ +I + NT + +N + FD + ++ Y
Sbjct: 58 SVVNLTGIHDQDVAKQRDFDY-YAPKITKILQ--NTVFVAHN-VDFDLPFLNYELVQHGY 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ N D +++ + + P+ S+KL DL GI+H++ H
Sbjct: 114 EALT------NKAIDTVELAKIAF---------PT----FPSYKLSDLTTQLGIKHLDPH 154
Query: 176 DAKADVYATLALVWLIREK 194
A +D Y T L+ I K
Sbjct: 155 KADSDAYGTAVLLLEIFNK 173
>gi|257784354|ref|YP_003179571.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
gi|257472861|gb|ACV50980.1| DNA polymerase III, epsilon subunit [Atopobium parvulum DSM 20469]
Length = 342
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 36/196 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+V+ D ET G DV + A ++V + E P + +P A I
Sbjct: 75 PESYVVVDLETTGLDVHYCEIIEIAALKV-VDGKITEEFSSLIHPPRE--IPS-GATAIN 130
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYR-NFYDSY 118
IT V A ++ F +IG+N++R+D F+R +F Y
Sbjct: 131 HIT-----NHMVKNAPTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLCDY 185
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDA 177
W +D Y + ++ +KL ++A ++ H AH A
Sbjct: 186 VW--------YD-------TYKLARQILE--------PPYKLINIAKRLNVKQHGKAHRA 222
Query: 178 KADVYATLALVWLIRE 193
AD Y T + +RE
Sbjct: 223 LADCYMTYGIYEKMRE 238
>gi|297156451|gb|ADI06163.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
Length = 254
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 58/177 (32%), Gaps = 20/177 (11%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G D R A V V E + E +PD +AV + GIT +
Sbjct: 11 FDLETTGTDPGEARIVTAAVVEVRGG-EPVGRREWLA---DPGVTIPD-DAVAVHGITTE 65
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A +G E + I ++ YN FD R+ S
Sbjct: 66 WAAAEGRPSREVADEIADVLVAHWQAGAPVVAYNA-AFDLSLLAAELRRHGLPSLG-ERL 123
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
G ++D A G + L+ + G+ H AHDA AD
Sbjct: 124 GGAETGPVVDPYTIDRAVD-------RYRKGKRT--LEAVCGEYGVVHERAHDAGAD 171
>gi|117919043|ref|YP_868235.1| oligoribonuclease [Shewanella sp. ANA-3]
gi|166216589|sp|A0KSR0|ORN_SHESA RecName: Full=Oligoribonuclease
gi|117611375|gb|ABK46829.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. ANA-3]
Length = 181
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 50/212 (23%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
N+ + D E G + +DR + A + D++ I V +DD L A
Sbjct: 5 ANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDDVL----AAMDD 60
Query: 60 ----ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS- 106
G + + + EA+ + F C N++ D +
Sbjct: 61 WNQKHHGESGLIDRVRASQMNEAQAVAQTIAFLEQYVPKGASPMCG---NSVGQDRRFLN 117
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R + R D + + D+ V + +SP+ +
Sbjct: 118 RYM--RELEDYFHY------RNLDVSTVKELVKRWSPETMA------------------- 150
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G + N H A D+ ++A + R K K+
Sbjct: 151 -GFKKQNTHQALQDIQESIAELQYYRSKVFKI 181
>gi|37528414|ref|NP_931759.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|41017433|sp|Q7MYS8|ORN_PHOLL RecName: Full=Oligoribonuclease
gi|36787852|emb|CAE16967.1| oligoribonuclease [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 181
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G D DR + A + D ++
Sbjct: 6 HNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILDE 42
>gi|149041576|gb|EDL95417.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_a
[Rattus norvegicus]
Length = 254
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTVTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|74214051|dbj|BAE29442.1| unnamed protein product [Mus musculus]
Length = 228
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 30 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 89
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 90 EHHGKSGLTKAVKESTVTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 142
>gi|74196748|dbj|BAE43110.1| unnamed protein product [Mus musculus]
Length = 237
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTVTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|74152556|dbj|BAE42568.1| unnamed protein product [Mus musculus]
Length = 224
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 26 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 85
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 86 EHHGKSGLTKAVKESTVTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 138
>gi|27229283|ref|NP_077195.2| oligoribonuclease, mitochondrial precursor [Mus musculus]
gi|78100196|sp|Q9D8S4|ORN_MOUSE RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
exonuclease 2 homolog; AltName: Full=Small fragment
nuclease; Flags: Precursor
gi|26357838|dbj|BAB25219.2| unnamed protein product [Mus musculus]
gi|148693756|gb|EDL25703.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Mus musculus]
Length = 237
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTVTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|56605730|ref|NP_001008327.1| oligoribonuclease, mitochondrial precursor [Rattus norvegicus]
gi|81910234|sp|Q5U1X1|ORN_RAT RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
exonuclease 2 homolog; AltName: Full=Small fragment
nuclease; Flags: Precursor
gi|55562847|gb|AAH86420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Rattus norvegicus]
gi|149041578|gb|EDL95419.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_c
[Rattus norvegicus]
Length = 237
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTVTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|332686697|ref|YP_004456471.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
ATCC 35311]
gi|332370706|dbj|BAK21662.1| DinG family ATP-dependent helicase YoaA [Melissococcus plutonius
ATCC 35311]
Length = 924
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 62/197 (31%), Gaps = 49/197 (24%)
Query: 9 DYETFGRDVALDRPAQFAGVR-----------VDRQWEKIESTEVFFCKPADDYLPDPEA 57
D ET G D +DR QF V D +I ++
Sbjct: 11 DLETTGVDPTVDRIIQFGCVLIENGEIVSHIGTDVNPNRIIPKQIQH------------- 57
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGI+ + + E + + I + T + +N + FD + + R
Sbjct: 58 --LTGISNARVQKAPYFE-DIAIMIFNLLTD--TIFVAHN-VHFDYRFLSHELVRCGLPP 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
D +D + F P + D ++ + H + H A
Sbjct: 112 L---------TIDAIDTVELAQIFLPTERSFRLSDLSSSLG----------LLHNHPHQA 152
Query: 178 KADVYATLALVWLIREK 194
+D T L+ +I +K
Sbjct: 153 DSDAQVTAELLLIIEQK 169
>gi|297518487|ref|ZP_06936873.1| exonuclease I [Escherichia coli OP50]
Length = 39
Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 430 RSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++ Y ++LQ L+ +Y D+ K L+ AL++Y Q ++
Sbjct: 1 PEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV 39
>gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 1485
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 34/196 (17%)
Query: 5 FVIYDYETFGR----------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD--YL 52
++I+D ET G R Q A D + + +E + D +
Sbjct: 2 YLIFDTETTGLPRNYNAPISDSENWPRAVQIAWQLHDHKGQLLEHKDFL---ITPDGFTI 58
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
P +A I GI+ + A + GV + + I+G NI FD + FYR
Sbjct: 59 PY-DAERIHGISTELATKRGVSIHHVFEEFEKALAKTQ-YIVG-QNIGFDIHIMGAEFYR 115
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
S L V+ + + + P G FK +L +
Sbjct: 116 YGVSSVLSK----------LPVLDTCTELTAELCRIPGGRAGK--FKYPNLTELHEFLFG 163
Query: 173 N----AHDAKADVYAT 184
AH+A ADV AT
Sbjct: 164 TPFAEAHNATADVEAT 179
>gi|167957555|ref|ZP_02544629.1| oligoribonuclease [candidate division TM7 single-cell isolate
TM7c]
Length = 182
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE 41
+ D E G D D+ + A + D + ++ E
Sbjct: 6 ILWVDLEMTGLDPTKDKILEVAAIATDWDFNEVGRFE 42
>gi|170017004|ref|YP_001727923.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
gi|169803861|gb|ACA82479.1| Rad3-related DNA helicase [Leuconostoc citreum KM20]
Length = 801
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 68/186 (36%), Gaps = 32/186 (17%)
Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAV 58
FV+ D ET G+ VA R Q G+ + I+ E F +P D +
Sbjct: 4 NKTFVVVDLETTGQSVAKGGRIIQI-GMTFIKNRRIIDHFESFVNPAQPIDRNIQQ---- 58
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+T I+ ++ E E + I + T II +N + FD Y + F R +
Sbjct: 59 -LTHISQKEVKNAPYFE-EIAPVIQNLLTD--TVIIAHN-VNFDYPYLNDEFARTGFPEL 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ +D ++ P ++L DL I NAH A
Sbjct: 114 TNA---------AIDTVQLAQILLPTA----------PGYRLLDLTTYLNITLNNAHRAN 154
Query: 179 ADVYAT 184
AD +AT
Sbjct: 155 ADAHAT 160
>gi|260063517|ref|YP_003196597.1| putative DNA polymerase III subunit epsilon [Robiginitalea
biformata HTCC2501]
gi|88782961|gb|EAR14135.1| putative DNA polymerase III epsilon chain [Robiginitalea biformata
HTCC2501]
Length = 258
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 45/196 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
++ +D ET G ++A DR + A ++V + ++ + P +P P EA
Sbjct: 5 LSKPICFFDLETTGTNIATDRIVELAILKVFPNGN--KESKTWLVNPG---VPIPEEASA 59
Query: 60 ITGITPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I GIT +K G E +R ++Q + G+N+ RFD R D
Sbjct: 60 IHGITDEKVA--GEPTFRELAREVYQMIQ--GCDLAGFNSNRFDIPLLAEELLRAGVD-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALAN------GIEH 171
+D+ + + D T F K++ LA G E
Sbjct: 114 ----------FDMKNAV---------------SVDVQTIFHKMEKRTLAAAYQFYCGKEL 148
Query: 172 VNAHDAKADVYATLAL 187
+AH A AD AT +
Sbjct: 149 TDAHSATADTQATYEV 164
>gi|152981086|ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille]
gi|151281163|gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille]
Length = 195
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ V D E G D DR + A V D + VF +D+ L
Sbjct: 21 NLVWVDMEMTGLDPDKDRIIEVAVVVTDANLNILGEGPVFAIHQSDEVL 69
>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
bacterium]
Length = 1428
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 45/230 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+++D ET G + D + ++ + ++ T F KP + +TGIT
Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIK--MKGSEVLGTYSTFVKPEKEL--SAMITSLTGIT 473
Query: 65 PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
D + EA + + F+ CI+ +N FD + RN ++ + W+
Sbjct: 474 -----EDMLSEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKH----FGGDWE 524
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D + + S+ L ++ + H + H A D
Sbjct: 525 MPC-----IDTLALAKSLFRS-----------KSYSLDNVVKRLKLGHFDHHRAFEDAKV 568
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKL------IDIQNMTPLVHVS 227
T ++ F L R + +L ++ ++ P H+S
Sbjct: 569 TAEVLKK--------FVQLAKKRGVQNVNELEKLRKNQNLDSLKPF-HIS 609
>gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
Length = 1478
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 69/201 (34%), Gaps = 44/201 (21%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D +E + DYL
Sbjct: 2 YLIFDTETTGLPKRWNAPITDTDNWPRCIQIAWQLHDEMGNLVE---------SQDYLVQ 52
Query: 55 P-------EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
P +A I GI+ + A ++GV AE + + S T I N+ FD
Sbjct: 53 PDGFNIPYDAEQIHGISTELAAQEGVPLAEVLEKFNVAMSK--TKFIVGQNVGFDVNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F+R ++ L V+ S Q P G FKL L +
Sbjct: 111 AEFHRMGVENPLQE----------LPVLDTCTEESALLCQIPGGRGGK--FKLPTLTELH 158
Query: 168 ----GIEHVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 159 EYLFNAPFAEAHNATADVEAT 179
>gi|158317483|ref|YP_001509991.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
gi|158112888|gb|ABW15085.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
Length = 237
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 70/195 (35%), Gaps = 31/195 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPE-AVFITGITP 65
D+ET G DV DR Q A ++V ++ C+ D + PE A I GIT
Sbjct: 12 DFETTGTDVETDRAVQVALLKVGPTGVLNQL-------CQIIDPGVDVPEAAARIHGITT 64
Query: 66 QKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
++A R+G AE R+ Q + + N FD R+
Sbjct: 65 ERARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNSSFDLTLLDRELRRH---------- 114
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDD--GATSFKLQDLALANGIEHVNAHDAKADV 181
+G S + ++ P I G + L LA + AHDA AD
Sbjct: 115 HGRSLAEADMLV-----LDPMVIDRELDPRRPGKRT--LTALATHYRVRQEGAHDALADC 167
Query: 182 YATLALVWLIREKKP 196
T + W + P
Sbjct: 168 LTTARIAWRLPRMHP 182
>gi|332520058|ref|ZP_08396522.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
Length = 1453
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/211 (23%), Positives = 72/211 (34%), Gaps = 41/211 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWE-----KIE---STEVFFCKPADDYLPDPE 56
++I+D ET G D P D +I + C ++DYL PE
Sbjct: 2 YLIFDTETTGLPKRWDAPI------TDTD-NWPRCIQIAWQLHDAMGNCIESEDYLVKPE 54
Query: 57 -------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
A I GI+ + A GV E + + + T + N++FD
Sbjct: 55 GFNIPYDAEKIHGISTELAQEQGVELIEVLEKFNIALNK--TKFVVGQNVKFDLNIMGAE 112
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-- 167
F R + L V+ + Q P G FKL L +
Sbjct: 113 FVREDIANQLQE----------LPVLDTCTEHTASLCQIPGGRGGR--FKLPTLTELHQY 160
Query: 168 --GIEHVNAHDAKADVYATLAL-VWLIREKK 195
AH+A ADV AT + LIR ++
Sbjct: 161 LFNQPFAEAHNATADVEATTRCFLELIRRQQ 191
>gi|326407322|gb|ADZ64393.1| ATP-dependent DNA helicase DinG [Lactococcus lactis subsp. lactis
CV56]
Length = 794
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/285 (19%), Positives = 101/285 (35%), Gaps = 51/285 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E + ++ Q V V+ E E F + P +TG++ ++
Sbjct: 11 DLEATDAHSSENKIIQIGIVLVEDG----EIVETFSTEVNPHEPLLPRISELTGLSDKQL 66
Query: 69 LRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E +E + ++ + + + + +N RFD F + N
Sbjct: 67 --KTAPEFSEVAAKVRELLTD--SVFVAHNA-RFDYGLLEKSFLNAGLE------FNEML 115
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYAT 184
R D +D+ R Y +F+ L+ L+ + H + H A +D YAT
Sbjct: 116 RVDTVDLARVFY----------------PTFEKYGLESLSEKLDLAHDHPHAAVSDAYAT 159
Query: 185 LALVWLIREKKPKL----FEYLYDYRN------KNQLRKLIDIQNMTP----LVHV--SG 228
L+ I K KL E L + + K L++ +D + P +VH +
Sbjct: 160 AELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATR 219
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQL 273
F AS S + + ++ + S +G + L +L
Sbjct: 220 KFRASVSKKSPLTALSANFSENISRLGLSSRSKQEKLAHLMETEL 264
>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
5427]
gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
5427]
Length = 837
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 40/202 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EA 57
N+ V+ D E+ G D Q A +R ++ ++ D L P E+
Sbjct: 474 NNIVVLDVESTGLSTIKDDVIQIAAIRYGKE-GVVDQL---------DILLKPTKSVGES 523
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
++ G + ++G+ E ++ F ++G+N + +D +++ R +
Sbjct: 524 YYVHGFSDDLLQKEGMEPKEALKQ-FVHFIQ-GAVLVGHN-VNYDLQIIKSMMSRYKLEP 580
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ + D + Y P KL+ L+ E + H+A
Sbjct: 581 I--------GEYQVYDTLDLAYKVYPKLSN----------HKLETLSKLIVTETIPTHNA 622
Query: 178 KADVYATLA----LVWLIREKK 195
D+ AT L+ I EKK
Sbjct: 623 MQDILATSEVLSHLLKHIEEKK 644
>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
743B]
gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
743B]
gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
743B]
Length = 867
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 29/192 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
++ +++D E+ G DV D Q A +R++R E I+S E F KP I G
Sbjct: 499 DNIIVFDVESTGTDVTEDEIIQIAAIRINRNGEVIDSFE-RFLKPKKSVKNSEH---IHG 554
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-NFYDSYRWS 121
+ + G + + +F N I+G+N +++D + +R N S +
Sbjct: 555 FSDEFLKEKGEDKETVIKEFLRF--SENAVIVGHN-VQYDINILSSEIHRLNLGKSKFLA 611
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ +D LD+ R Y P+ + FK +++ HDA D+
Sbjct: 612 F------YDTLDIYRRFY---PNLVNHKLNTLSDI-FKTENIPS---------HDAMDDI 652
Query: 182 YATLALVWLIRE 193
AT L LIR
Sbjct: 653 LATKDL--LIRA 662
>gi|15673814|ref|NP_267989.1| DinG [Lactococcus lactis subsp. lactis Il1403]
gi|12724861|gb|AAK05930.1|AE006413_6 ATP-dependent helicase DinG [Lactococcus lactis subsp. lactis
Il1403]
Length = 794
Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/285 (19%), Positives = 101/285 (35%), Gaps = 51/285 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E + ++ Q V V+ E E F + P +TG++ ++
Sbjct: 11 DLEATDAHSSENKIIQIGIVLVEDG----EIVETFSTEVNPHEPLLPRISELTGLSDKQL 66
Query: 69 LRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E +E + ++ + + + + +N RFD F + N
Sbjct: 67 --KTAPEFSEVAAKVRELLTD--SVFVAHNA-RFDYGLLEKSFLNAGLE------FNEML 115
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYAT 184
R D +D+ R Y +F+ L+ L+ + H + H A +D YAT
Sbjct: 116 RVDTVDLARVFY----------------PTFEKYGLESLSEKLDLAHDHPHAAVSDAYAT 159
Query: 185 LALVWLIREKKPKL----FEYLYDYRN------KNQLRKLIDIQNMTP----LVHV--SG 228
L+ I K KL E L + + K L++ +D + P +VH +
Sbjct: 160 AELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATR 219
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQL 273
F AS S + + ++ + S +G + L +L
Sbjct: 220 KFRASVSKKSPLTALSANFSENISRLGLSSRSKQEKLAHLMETEL 264
>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
Length = 1430
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 31/221 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G ++ + AGV++ + E I+ E F L + +TGI
Sbjct: 409 TYVVFDVETTGLSAVYNKIIELAGVKI-KDGEIIDRFEAF--ADPKHAL-SATTIELTGI 464
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T E I + F I+ +N FD + ++
Sbjct: 465 TDDMVQGQPDPEV-----ITKRFVDWCGDSILVAHNASFDMGFLEATLRSGGHEP----- 514
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ ++D + P + +L LA IE H A D
Sbjct: 515 ----DDYPVIDTLELARTLMPTL----------KNHRLNTLAKRFDIELTQHHRAIYDAE 560
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
AT L+ + + ++FE + D+ + P
Sbjct: 561 ATAYLLMKLLDLAKQMFE--MTTHRSLNAKVGSDVSKIRPF 599
>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
27755]
gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC
27755]
Length = 1521
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 30/185 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITG 62
+V++D ET G A D+ + V+V+ +I F P +P P + +T
Sbjct: 477 TYVVFDLETTGFSSAKDKIIEIGAVKVENG--EITDKYSTFVNPK---IPIPFRITQLTS 531
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + E E + QF ++ +N FD + + + S
Sbjct: 532 ITDEMVME--SPEIETI--LPQFLKFVGDAVLVAHNASFDVSFIEENCRQQGIEPDFTS- 586
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D + P + FKL +A A I + H A D
Sbjct: 587 ---------VDTVGLARVLLPTLSK----------FKLNVVAKALNISQEHHHRAVDDAR 627
Query: 183 ATLAL 187
T +
Sbjct: 628 VTAEI 632
>gi|313156971|gb|EFR56403.1| exonuclease [Alistipes sp. HGB5]
Length = 255
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 71/205 (34%), Gaps = 49/205 (23%)
Query: 5 FVIYDYETFGRDVALDRPAQ--FAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
+ +D ET G D A DR + A + D V K + +P+ EA I
Sbjct: 9 IIFFDLETTGVDTAKDRIVEISMAKIMPD------GEEIVKTRKLNPEMHIPE-EATAIH 61
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + ++D A+ ++ + QF G+N+ RFD F R D
Sbjct: 62 GIT-DEDVKDCPTFAQVAKSLEQFIR--GCDFGGFNSNRFDLPVLVEEFLRAGVDVDF-- 116
Query: 122 WDNGNSRWDLLDVM--------RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
D+ ++ A Y F D + +
Sbjct: 117 --KRRKFIDVQNIFHKKEQRTLVAAYKFYCDK------------------------DLDD 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A+AD AT ++ E+ P L
Sbjct: 151 AHSAEADTLATYEVLKAQLERYPDL 175
>gi|294815713|ref|ZP_06774356.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|294328312|gb|EFG09955.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
Length = 251
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 30/198 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGITPQ 66
+D ET G D R A V A +A I GIT +
Sbjct: 22 FDLETTGTDPREARIVTAAVVEARA-----GEPVRRRTWLADPGVRIPAQASAIHGITSE 76
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFD-----DYYSRNIFYRNFYDSY 118
+A +G E + + ++ YN FD R
Sbjct: 77 RAAAEGRPAREVADEVAAELCGYWARGVPVVAYNA-AFDLSLLAAEIRRYGL------PS 129
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
G ++D A G + L+ ++ G+ +AHDA
Sbjct: 130 LSDRLGGRPTGPVIDPYTIDRAVD-------RYRKGKRT--LEAVSAEYGVPLEDAHDAT 180
Query: 179 ADVYATLALVWLIREKKP 196
AD A + + + + P
Sbjct: 181 ADALAAVRVAGALALRHP 198
>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
ivanovii FSL F6-596]
gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
ivanovii FSL F6-596]
Length = 1452
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 435 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 490
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD + + +
Sbjct: 491 TDD--MVKGSDPIDVVLQRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------K 540
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 541 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 584
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 585 AEATAYLAWKLIKDAK 600
>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
Length = 1459
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V +D ET G +F V +++ + + FF KP +TGI
Sbjct: 424 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLK-VGKVTQFFIKPQAKI--GAFTTELTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
T Q +G+ + +RI+ +N +FD + + F N
Sbjct: 481 TQQMLDSEGLSIKDGLQRIYDCLDGKVAIA---HNAKFDFNFLKEQFRLNNVP 530
>gi|227548036|ref|ZP_03978085.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079890|gb|EEI17853.1| DNA polymerase III subunit epsilon [Corynebacterium lipophiloflavum
DSM 44291]
Length = 223
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 67/207 (32%), Gaps = 44/207 (21%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+D ET + R A VR+D E++ V +P+ EA + GI
Sbjct: 12 FDLETTSANPGEARIVTSALVRIDGSSVTSTEELADPGVE--------IPE-EAAAVHGI 62
Query: 64 TPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T +KA +G AE I + + T ++ N +D R +
Sbjct: 63 TTEKARAEGRPHDEVLAETVAEIRKCWEDGLTLVV--FNAPYDLTVLRRL---------- 110
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
G D F P I L L+ G+ NAH+A +
Sbjct: 111 ----TGTFTVDGP-------VFDPLVIDRAKDRYRKGKRNLGALSEIYGVRLDNAHEATS 159
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYR 206
D A I K+ +++ L
Sbjct: 160 DATA----AARIAWKQVRMWPELATMS 182
>gi|34541463|ref|NP_905942.1| exonuclease [Porphyromonas gingivalis W83]
gi|34397780|gb|AAQ66841.1| exonuclease [Porphyromonas gingivalis W83]
Length = 259
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 31/191 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N + +D ET G D+ DR + + ++V S E + + PE+ I
Sbjct: 5 LKNPLIFFDLETTGVDLVRDRIVEISILKVMPD----GSEECKTRRINPERPIPPESTAI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI + ++D R + + + + G+N+ RFD F R D
Sbjct: 61 HGIR-DEDVKDCPP----FRSVAKSLAQWIEGCDLAGFNSTRFDVPMLVEEFLRAGVDID 115
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
L+DV + P ++ +R + NAH A+
Sbjct: 116 LRHRK-------LIDVQTIFHKMEPRTLEAATRFYCNRTL-------------ENAHSAE 155
Query: 179 ADVYATLALVW 189
AD AT +
Sbjct: 156 ADTRATYDVFK 166
>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
Length = 1470
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 48/203 (23%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----AVF 59
+V++D ET G D + A V+++ + +++ E F DP A
Sbjct: 453 TYVVFDVETTGLSAVYDTIIELAAVKMENG-QVVDTFESFI---------DPGRPLSATI 502
Query: 60 I--TGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I TGIT G + E + + F ++ +N FD + + + D
Sbjct: 503 INLTGITDDML--KGSDDIE---TVLKRFKEWCGDAVLVAHNASFDMGFLNTAYSKAGID 557
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVN 173
N+ D L++ R +Y FK L L I
Sbjct: 558 ------KAENAVIDTLELARFLY----------------PHFKNHRLNTLTKKFNIVLEQ 595
Query: 174 AHDAKADVYATLALV-WLIREKK 195
H A D AT L LI++
Sbjct: 596 HHRAVFDAEATAYLAWKLIKDAN 618
>gi|51849608|dbj|BAD42331.1| DNA helicase RecG [Nannochloris bacillaris]
Length = 1341
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 72/221 (32%), Gaps = 45/221 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G D P + A + T + AD +A +TGIT
Sbjct: 137 IVFDLETTGLSKEKDHPVEIAA---EAPLS--GRTFSTLIRLADGMSISTKAEEVTGITT 191
Query: 66 QKALRDGVVE-----AEFSRRIHQFF--SVPN--TCIIGYNNIRFDDYYSRNIFYR-NFY 115
+ + A F R I + P ++G+N RFD + R +
Sbjct: 192 AQCKDPSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLLLHCAKRFDVA 251
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAF-----SPDGIQWPSRDDGATSFKLQDLALANGIE 170
+LD + A + P+ + L E
Sbjct: 252 APL---------SARILDTLSASRSLLTGSAKPEAFNL--------TTLYGHLTRK---E 291
Query: 171 HVNAHDAKADVYATLALVWLIREKK-----PKLFEYLYDYR 206
+ AH A ADV T+A++ + E P F ++ R
Sbjct: 292 AIAAHRASADVKMTVAVLHALLEHSAGMSGPDGFAKFFNRR 332
>gi|306822551|ref|ZP_07455929.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|309801474|ref|ZP_07695601.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
JCVIHMP022]
gi|304554096|gb|EFM42005.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|308221989|gb|EFO78274.1| BRCA1 C-terminal domain protein [Bifidobacterium dentium
JCVIHMP022]
Length = 328
Score = 52.5 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 34/199 (17%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + + D+ET G + A DR + V V + E + D A +I
Sbjct: 14 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGTLEDEHETLI-RVHRDI----GAQWI 68
Query: 61 TGITPQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SY 118
I+ + + E E +R + + + +N + FD + + + R D
Sbjct: 69 HHISAVELIH--APEFEGIARELRDLLA--GRVFVAHN-VAFDSKFLLSEYRRLGADIPV 123
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
NS M S I G S L D GI++ +AH A
Sbjct: 124 -------NSH-----TMLCTMKLSRSLI-------GVGS--LADCCREFGIDNEDAHSAL 162
Query: 179 ADVYATLALVWLIREKKPK 197
+D +AT L+ + + PK
Sbjct: 163 SDAHATALLLGRLMDADPK 181
>gi|152992669|ref|YP_001358390.1| exonuclease [Sulfurovum sp. NBC37-1]
gi|151424530|dbj|BAF72033.1| exonuclease [Sulfurovum sp. NBC37-1]
Length = 244
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 30/183 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G + DR Q + V ++IE + EA+ + IT
Sbjct: 4 YVLFDTETTG-NQEADRIIQIGAMIV-HSKDEIEVFDELCSTQVP---ISIEAMEVHNIT 58
Query: 65 PQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P A + E F++R+ + + N I +NI FD + N
Sbjct: 59 PDVIAGKPTYSETAFAKRVQELNTTENYLIA--HNISFDLGMLEKEGFVN---------- 106
Query: 124 NGNSRWDLLDVMRAIYAFSPDG----IQWPSRDDGATSFKLQ-DLALANGIEHVNAHDAK 178
+ L+D +R PD +Q+ G +K + A GI + AHDA
Sbjct: 107 ----HYTLIDTVRCTKHLLPDSPYHRLQYLRYSLGL--YKTEAQEAQKLGIT-IKAHDAI 159
Query: 179 ADV 181
DV
Sbjct: 160 GDV 162
>gi|260426760|ref|ZP_05780739.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
gi|260421252|gb|EEX14503.1| DNA polymerase III, epsilon subunit [Citreicella sp. SE45]
Length = 468
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 72/215 (33%), Gaps = 38/215 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPE-AVFIT 61
+ ++D ET G D Q VRV + P +P P + +
Sbjct: 275 SYTVFDTETTGLLPHKDEVVQIGAVRV-LNGRIVPGEVLDLLVDPG---IPIPASSSRVH 330
Query: 62 GITPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+T A+ G + E RR H+F + I+ +N FD F R D
Sbjct: 331 KVT--DAMVAGKPDIGEAGRRFHRF--AKGSVIVAHNA-PFD-----MAFLRRHRDRMGV 380
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAK 178
WD+ +LD + + L L G+E A H A
Sbjct: 381 EWDHP-----ILDTVLLSAVLFGAS----------ETHTLDALCQRLGVEIPQALRHTAL 425
Query: 179 ADVYAT----LALVWLIREKKPKLFEYLYDYRNKN 209
D AT + ++ ++ + + F + + K+
Sbjct: 426 GDANATAQVLVMMLPMLAARGMRTFGEVLEETRKH 460
>gi|332829625|gb|EGK02271.1| hypothetical protein HMPREF9455_01541 [Dysgonomonas gadei ATCC
BAA-286]
Length = 256
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G D DR + + ++V EV + + P A +
Sbjct: 5 LKNPLVFFDLETTGTDTVKDRIVEISYLKVYPN----GKQEVKTKRLNPEMPIPPGATAV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI+ + ++D + ++ + + G+N+ RFD F R D
Sbjct: 61 HGIS-DEDVKDCPTFKQIAKSLADQM--EGCDLAGFNSSRFDIPLLAEEFLRAGVDIDF- 116
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
S+ ++DV + ++ + F E +AH A+AD
Sbjct: 117 ------SKRKMIDVQIIFHKKEQRTLEAAYK------FYCDK-------ELTDAHSAEAD 157
Query: 181 VYATLALVWLIREKKPKL 198
AT ++ +K P L
Sbjct: 158 TLATFEVLKAQLDKYPDL 175
>gi|124002773|ref|ZP_01687625.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
gi|123992001|gb|EAY31388.1| DNA polymerase III epsilon chain [Microscilla marina ATCC 23134]
Length = 270
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 33/190 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ N V +D ET G ++A DR ++A ++ +IE K + +P P E+
Sbjct: 7 LKNPLVFFDLETTGTNIAKDRIVEWAFIKALPN-GEIEKDVK---KINPE-MPIPIESSL 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GI + V +A + I + + GYN +RFD F R D
Sbjct: 62 VHGI-----YDEHVKDAPTFKSIAKNLVKFLEGCDLAGYNIVRFDVPVLVEEFLRVGVD- 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ N + L+D + + P + + S L+D AH A
Sbjct: 116 ----FSVNNRK--LVDAQKIFFMMEPRTLTAAYKFYCNKS--LED-----------AHTA 156
Query: 178 KADVYATLAL 187
+AD ATL +
Sbjct: 157 EADTVATLEV 166
>gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a]
gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a]
Length = 580
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 65/191 (34%), Gaps = 25/191 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G A + VRV ++ + +P+ +P P ITGI
Sbjct: 20 TFVVVDLETTGTSAATSEITEIGAVRVRGG--EVLAEMSTLVRPSAG-IP-PMVSVITGI 75
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + EAE F+ ++ +N FD + R R Y W
Sbjct: 76 T-DAMVATAPAEAEVVPTFL-EFAR-GAVLVAHNA-PFDLGFLRAAAQRCGYPPPAWEH- 130
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
LD +R D A +L LA H A AD A
Sbjct: 131 --------LDTLRIARRL--------VSRDEAPDCRLASLARLFRSSTEPCHRALADARA 174
Query: 184 TLALVWLIREK 194
T+ ++ + E+
Sbjct: 175 TVDVLHGLFER 185
>gi|154686487|ref|YP_001421648.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus amyloliquefaciens FZB42]
gi|154352338|gb|ABS74417.1| DinG [Bacillus amyloliquefaciens FZB42]
Length = 928
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 62/186 (33%), Gaps = 38/186 (20%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G D+ Q A V ++ +I + P +P P +TGI
Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNQ-AIP-PFIEQLTGI 61
Query: 64 TPQKALRDGVVEAEF-----SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ G+VE E + I + +N I FD + R+ Y+
Sbjct: 62 S------SGMVENELPFEAVAEEIFHLLD--GAYFVAHN-IHFDLGFVRHELSEAGYELP 112
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+LD + P G +KL +L I H H A
Sbjct: 113 DCE---------VLDTVELSRIVFP----------GFEGYKLGELCAELNIVHDRPHRAD 153
Query: 179 ADVYAT 184
+D T
Sbjct: 154 SDAEVT 159
>gi|261343971|ref|ZP_05971616.1| ribonuclease T [Providencia rustigianii DSM 4541]
gi|282568361|gb|EFB73896.1| ribonuclease T [Providencia rustigianii DSM 4541]
Length = 214
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 60/191 (31%), Gaps = 38/191 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEK----IESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + + I+ T F +P + +P A+ TGI
Sbjct: 23 DVETGGFNPKTDGLLEIAAITLKMD-NEGWLSIDETLHFHVEPFEGANLEPAALAFTGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSV--PNT----CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + NT I+ +N FD + R+ RN
Sbjct: 82 PTNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L ++ + + DG
Sbjct: 142 PFHPFATF-----DTAALSGLVFGQTILAKACVTAGIPFDGK-----------------Q 179
Query: 174 AHDAKADVYAT 184
AH A D T
Sbjct: 180 AHGALYDTNRT 190
>gi|227514853|ref|ZP_03944902.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
fermentum ATCC 14931]
gi|227086785|gb|EEI22097.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
fermentum ATCC 14931]
Length = 946
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 59/197 (29%), Gaps = 46/197 (23%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVFITGITPQ 66
D ET G V R Q V V + + I E K +P +T +
Sbjct: 18 DLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVVP---------LTIE 64
Query: 67 KAL------RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ G E + +T + +N + FD + F R
Sbjct: 65 QLTGIKNNDVKGAPLFEDVAPTLKSLLD-DTIFVAHN-VNFDFPFLNAEFERAGEAPL-- 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + P SF+L+DL I+H H A +D
Sbjct: 121 -------TIPAIDTVTLSQILMPTA----------PSFRLRDLTSYLAIDHDQPHSAVSD 163
Query: 181 VYAT----LALVWLIRE 193
AT + L+ + +
Sbjct: 164 AVATAHLLIELLKRLAD 180
>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
parvum serovar 14 str. ATCC 33697]
gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
parvum serovar 14 str. ATCC 33697]
Length = 1442
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/308 (16%), Positives = 104/308 (33%), Gaps = 57/308 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+VI+D ET G D +F V + ++I FF KP + +T
Sbjct: 406 NATYVIFDIETTGLFPNFDEIIEFGAVIMQNN-KQIGEKIQFFVKPIQQI--NENVTNLT 462
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ Q+ + + + E +I + F ++ +N I FD + + +
Sbjct: 463 NIS-QEMVNNAIDEKTALLKIKEIFDD--HILVAHNGINFDINFINQRLLKWGLEPL--- 516
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179
N + +D + A +P S +L + +++ + AH A
Sbjct: 517 -KNPS-----IDTLMISRAINP-----------FKSHRLGAICKKYEVDYNDEIAHRADY 559
Query: 180 DVYATLALVWLIREK-------------KPKLFEYLYDYRNKNQ-----LRKLIDIQNMT 221
D + +++ KL + R+ ++ ++++M
Sbjct: 560 DAIVLTDVFKVMKNNLFNDFGITNLNEINTKLQTTMLRNRSFGNWINLYIKNQANVKDMY 619
Query: 222 PLVHVSG--MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGD---MRVFQDLDSVQLAKR 276
LV +S M+ T + KD +I N + + + ++ R
Sbjct: 620 ELVSISHTDMY-----YTRPTITTGFLANKKDKLIISNSIHESDLINALYSKNDEEIK-R 673
Query: 277 LFTSHDEL 284
L +D +
Sbjct: 674 LIQRYDFI 681
>gi|302799380|ref|XP_002981449.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
gi|300150989|gb|EFJ17637.1| hypothetical protein SELMODRAFT_420926 [Selaginella moellendorffii]
Length = 1254
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 56/189 (29%), Gaps = 34/189 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITG 62
+++D ET G A DR +FA R +P +TG
Sbjct: 176 TIIVFDLETTGFRAAGDRIIEFAA----RDLAG-GDRSTISALVNPGRTVPYLI-TAVTG 229
Query: 63 ITPQKALRD--------GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
IT Q + G +F + ++ +N RFD + F
Sbjct: 230 ITNQMVNKPHVPSWKEVGPSIIQFVESRRK--GDEPVILVAHNGKRFDVPFLLKEFQSCG 287
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPD-GIQWPSRDDGATSFKLQDLALANGI-EHV 172
W W LD M G W S KL L A G+
Sbjct: 288 IQVPEW--------WLFLDSMPLARETKKKFGYNW-------RSLKLSVLHEAYGLHSTE 332
Query: 173 NAHDAKADV 181
AH A ADV
Sbjct: 333 RAHRAMADV 341
>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
mycoides subsp. capri str. GM12]
gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
mycoides subsp. capri str. GM12]
gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
Mycoplasma mycoides JCVI-syn1.0]
Length = 1482
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 46/191 (24%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------ 59
V +D ET G LD +F + + + E ++ D L P+A
Sbjct: 436 VFFDLETTGLSPELDEIIEFGAI--EYNLKTGERKKI-------DILIKPKAKLKAFTQK 486
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T IT + +E F ++I++ I+ +N FD F + +
Sbjct: 487 LTNITEKMLEDKPSIEQAF-KQINEIIKD---AILVAHNANFD-----FTFLSYWSEKLG 537
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH-- 175
+ N+ D L + R IY PD S +L LA I + AH
Sbjct: 538 Y-GKLENTIIDTLTISRIIY---PDL----------KSHRLGSLAKRVNISYDPSIAHRG 583
Query: 176 ----DAKADVY 182
D AD+Y
Sbjct: 584 DYDADILADIY 594
>gi|119897809|ref|YP_933022.1| oligoribonuclease [Azoarcus sp. BH72]
gi|166215750|sp|A1K5N0|ORN_AZOSB RecName: Full=Oligoribonuclease
gi|119670222|emb|CAL94135.1| oligoribonuclease [Azoarcus sp. BH72]
Length = 182
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 56/210 (26%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
NH + D E G + DR + A V D Q I V + PE+V
Sbjct: 5 PNHLIWLDMEMTGLEPDRDRIIEIALVITDSQLNTIAEAPVI-------AVHQPESVLDA 57
Query: 60 -------ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDY 104
G + + V EAE R+ F C N+I D
Sbjct: 58 MDDWNKNTHGKSGLIDRVRASTVSEAEAEARMLAFLQEWVPARTSPMCG---NSICQDRR 114
Query: 105 YS-RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
+ R + +W + + D+ + + P+ +
Sbjct: 115 FLARYM-------PAFEAWFHYRN-LDVSTLKELAKRWRPEVYK---------------- 150
Query: 164 ALANGIEHVNAHDAKADVYATLALVWLIRE 193
G++ H+A AD++ ++ + R+
Sbjct: 151 ----GVDKKGKHEALADIHESIGELRHYRD 176
>gi|13097411|gb|AAH03445.1| Rexo2 protein [Mus musculus]
Length = 205
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 7 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 67 EHHGKSGLTKAVKESTVTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 119
>gi|315650299|ref|ZP_07903371.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315487410|gb|EFU77720.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 236
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 27/202 (13%)
Query: 3 NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWE--KIESTEVFFCKPADDYLPDPEAVF 59
N + +D ET G LD+ + A + +D+ +++ F LP +
Sbjct: 10 NQIIFFDTETTGFHPERLDQIIELAAISIDKTGRQQEMDEFIKLF---RVQELPQ-QITE 65
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI+ G E + ++ +N +FD + +RN
Sbjct: 66 LTGISSDTLSAQGKDEFAVLNKFIDMIQGNGKTLLIAHNAQFDLKFMAYAIHRNKNK--- 122
Query: 120 WSWD---NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
W N D L V D Q+P R + A L N ++ N+H
Sbjct: 123 -EWMQVFNDCDYLDTLTV-------YKDRRQYPHRLESAIV----QYHLINKVK--NSHR 168
Query: 177 AKADVYATLALVWLIREKKPKL 198
A D A + + + E++ L
Sbjct: 169 AIDDCRALIEVTRCMYEEREDL 190
>gi|302877146|ref|YP_003845779.1| Exonuclease RNase T and DNA polymerase III [Clostridium
cellulovorans 743B]
gi|307687841|ref|ZP_07630287.1| Exonuclease RNase T and DNA polymerase III [Clostridium
cellulovorans 743B]
gi|302580003|gb|ADL54015.1| Exonuclease RNase T and DNA polymerase III [Clostridium
cellulovorans 743B]
Length = 205
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ + +D ET G + Q + + D + +K+E FF +D P EA I
Sbjct: 2 NMIFFDTETTGLKPG--QICQLSYIKVTTDTKPQKVEGKNFFFS--VEDIEPSAEA--IH 55
Query: 62 GITPQKA--LRDGVVEAEFSRRIHQFFSVPNTC--IIGYNNIRFDDYYSRNIFYR 112
G + + L DG EFS +F + C +IGYN + FD + FYR
Sbjct: 56 GFSVEDLIELSDG---CEFSDLYEEFINDFVDCDLVIGYN-VNFDIKFLVAEFYR 106
>gi|119898701|ref|YP_933914.1| DNA polymerase III epsilon subunit-like protein [Azoarcus sp. BH72]
gi|119671114|emb|CAL95027.1| DNA polymerase III epsilon chain-like protein [Azoarcus sp. BH72]
Length = 734
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 46/199 (23%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRV-------DRQWEKIESTEVFFCKPADDYLPDP 55
+ ++D ET G + + D Q VRV +E++ C+P +
Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDP----CRPLPE----- 593
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
E+ + GIT V+EA H F + T ++ +N FD R + +
Sbjct: 594 ESARVHGITADMLAGQPVIEAVL-PSFHAFAAD--TVLVAHNA-AFD---MRFLQLKEDL 646
Query: 116 DSYRWSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
R+D +LD + P+ S +L+ +A GI V
Sbjct: 647 TGL---------RFDQPVLDTLLLSAVIHPN----------QDSHRLEAIAERLGITVVG 687
Query: 174 AHDAKADVYATLAL-VWLI 191
H A D T + + L+
Sbjct: 688 RHTALGDAMVTAEVFLKLV 706
>gi|291619097|ref|YP_003521839.1| Orn [Pantoea ananatis LMG 20103]
gi|291154127|gb|ADD78711.1| Orn [Pantoea ananatis LMG 20103]
gi|327395429|dbj|BAK12851.1| oligoribonuclease Orn [Pantoea ananatis AJ13355]
Length = 194
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 19 NNLIWIDLEMTGLDPERDRIIEIATIVTDADLNILAE 55
>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
Length = 906
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 65/183 (35%), Gaps = 19/183 (10%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
I+D ET G DV D Q A V+V S + +D +P+ +
Sbjct: 504 NETITIFDTETTGLDVFHDDILQIAAVKVRNGAVVPGSALSLHLE-SDREIPEMLGDIVN 562
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I ++ + + E +R + T ++G+N +D + N R
Sbjct: 563 PIIEERRNQTLLPRREALQRFVDY--ARGTVLLGHNA-DYDIHILANNLRREMP-----E 614
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N D D + I P G +KL+ L +E N+H A ADV
Sbjct: 615 TALPNELSDYFDSLHLIRLLRP----------GLRQYKLKYLLEVLHLEGENSHLADADV 664
Query: 182 YAT 184
AT
Sbjct: 665 NAT 667
>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
Length = 1436
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D+ + + V+++ I+ E F + + +T IT
Sbjct: 420 YVIFDVETTGLSAIYDKVIELSAVKMENG-NVIDEFEEF---IDPGFPLSETTINLTSIT 475
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +R + E E + +F+ I+G+N + FD + + R+ + N
Sbjct: 476 -NEMVRGSLSEKEVFTKFREFYED--AIIVGHN-VTFDIGFMNTGYLRHGMEEI----KN 527
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P ++L LA + + H A D T
Sbjct: 528 P-----IIDTLTLARFLYPTL----------KGYRLNTLAKKFNVALEHHHRAIYDAETT 572
Query: 185 LALVWLI 191
L +L
Sbjct: 573 GHLCYLF 579
>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
Length = 1436
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D+ + + V+++ I+ E F + + +T IT
Sbjct: 420 YVIFDVETTGLSAIYDKVIELSAVKMENG-NVIDEFEEF---IDPGFPLSETTINLTSIT 475
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +R + E E + +F+ I+G+N + FD + + R+ + N
Sbjct: 476 -NEMVRGSLSEKEVFTKFREFYED--AIIVGHN-VTFDIGFMNTGYLRHGMEEI----KN 527
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P ++L LA + + H A D T
Sbjct: 528 P-----IIDTLTLARFLYPTL----------KGYRLNTLAKKFNVALEHHHRAIYDAETT 572
Query: 185 LALVWLI 191
L +L
Sbjct: 573 GHLCYLF 579
>gi|291613511|ref|YP_003523668.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
lithotrophicus ES-1]
gi|291583623|gb|ADE11281.1| Exonuclease RNase T and DNA polymerase III [Sideroxydans
lithotrophicus ES-1]
Length = 181
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/207 (19%), Positives = 68/207 (32%), Gaps = 42/207 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---------P 53
N+ V D E G DR + A V D + + V +D L
Sbjct: 6 NNLVWIDMEMTGLLPDTDRIIEVALVVTDSELNTVAEAPVLVVHQSDSVLDGMDNWNKST 65
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFY 111
++ I + L D +VEA+ + + C N+I D R
Sbjct: 66 HGKSGLIDKVK-ASTLDDAMVEAQMLAFLQEHVPTRTSPMCG---NSICQD----RRFLA 117
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
R + + + D+ + + P+ +ANGI+
Sbjct: 118 RWM--PKLEDYFHYRN-LDVSTLKELAKRWKPE--------------------VANGIKK 154
Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198
H+A AD+Y ++A + RE KL
Sbjct: 155 HGKHEALADIYESIAEMKHYREHFIKL 181
>gi|126326996|ref|XP_001381185.1| PREDICTED: similar to CGI-114 protein [Monodelphis domestica]
Length = 333
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 25/122 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPE--- 56
M V D E G D+ D+ + A + D + + +P D L D
Sbjct: 135 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQP--DELLDSMSEW 192
Query: 57 ------------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
AV + IT Q+A E EF + Q + P C + N++ D
Sbjct: 193 CKEHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKK 245
Query: 105 YS 106
+
Sbjct: 246 FL 247
>gi|88601936|ref|YP_502114.1| exonuclease [Methanospirillum hungatei JF-1]
gi|88187398|gb|ABD40395.1| Exonuclease [Methanospirillum hungatei JF-1]
Length = 215
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 35/213 (16%)
Query: 5 FVIYDYETFGRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
++I+D E+ G R Q A + D + E + + P +P
Sbjct: 3 YLIFDTESTGL-PREEKDPFHYPEYWPRMVQLAWILTDGETIITEENYLIY--PDGFVIP 59
Query: 54 DPEAVFITGITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
++ I GIT ++A +G E FS I Q ++G+N + FD +
Sbjct: 60 S-SSMEIHGITNERAREEGKPVLEVLSVFSESIKQ-----ADVLVGHN-VSFDRSIVTSE 112
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
+ R ++ + +V + G +WPS + F ++
Sbjct: 113 YSRAKLNAPILKLPYHCTMKTSTEVCKLPAKGGRRGYKWPSLSE-LHQFLFEE------- 164
Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYL 202
+AHDA ADV A + + K LF+ L
Sbjct: 165 PFEHAHDASADVRACMRC--YLELKNRGLFQEL 195
>gi|325956898|ref|YP_004292310.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
gi|325333463|gb|ADZ07371.1| ATP-dependent DNA helicase [Lactobacillus acidophilus 30SC]
gi|327183677|gb|AEA32124.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1118]
Length = 926
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 5 FVIYDYETFGRDVALDR-PAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF 59
F + D ET G QF + + + +++ + + P P++V
Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAII--KNLKVVKT----YSFMIN---PHREIPQSVV 60
Query: 60 -ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI+ + + ++ +I + NT + +N + FD + ++ YD+
Sbjct: 61 NLTGISNGDVQKQKDFDF-YAPKIVKILQ--NTVFVAHN-VDFDLPFLNYELTQHGYDAL 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N D +++ + + P+ S+KL DL I+H+N H A
Sbjct: 117 T------NKAIDTVELAKIAF---------PT----LPSYKLSDLTAQLEIKHLNPHKAD 157
Query: 179 ADVYAT-LALVWLIRE 193
+D Y T + L+ +I++
Sbjct: 158 SDAYGTAILLIKIIKQ 173
>gi|149578823|ref|XP_001514027.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
Length = 350
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 40 MGQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAKGPNLIIKQPDELLDSMSEWCK 99
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF + Q + P C + N++ D +
Sbjct: 100 EHHGKSGLTKAVKESTITLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 152
>gi|154333792|ref|XP_001563151.1| mitochondrial DNA polymerase I protein B [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060163|emb|CAM45570.1| putative mitochondrial DNA polymerase I protein B [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1419
Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 20/190 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V +D ET G + + D + A ++ IE+ F P V I IT
Sbjct: 765 IVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRPISPRTVGIHHIT 817
Query: 65 PQKALRDGVVEAEFSRRIHQF----FSVPNT----CIIGYNNIRFDDYYSRNIFYRNFYD 116
+ V+ ++ I Q+ + N ++G+N D R +
Sbjct: 818 NEMVRDAPTVDV-VAKSIGQYLRLDMASYNPHEILVLVGHNVFSLDQPMLRRAL-ECYAP 875
Query: 117 SYRWSWDNGNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVN 173
+ LL+ R++ + + P + A+S +L L A + +
Sbjct: 876 ECQLDGVLFCDSLALLNSHRSVLRWRLRGNRANQPLMEALASSLRLSRLITALNVRPEGD 935
Query: 174 AHDAKADVYA 183
H A D A
Sbjct: 936 LHRADTDTKA 945
>gi|315038483|ref|YP_004032051.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
gi|312276616|gb|ADQ59256.1| ATP-dependent DNA helicase [Lactobacillus amylovorus GRL 1112]
Length = 926
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 39/196 (19%)
Query: 5 FVIYDYETFGRDVALDR-PAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEAVF 59
F + D ET G QF + + + +++ + + P P++V
Sbjct: 10 FAVVDLETTGTQRENGHHIIQFGCAII--KNLKVVKT----YSFMIN---PHREIPQSVV 60
Query: 60 -ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI+ + + ++ +I + NT + +N + FD + ++ YD+
Sbjct: 61 NLTGISNGDVQKQKDFDF-YAPKIVKILQ--NTVFVAHN-VDFDLPFLNYELTQHGYDAL 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N D +++ + + P+ S+KL DL I+H+N H A
Sbjct: 117 T------NKAIDTVELAKIAF---------PT----LPSYKLSDLTAQLEIKHLNPHKAD 157
Query: 179 ADVYAT-LALVWLIRE 193
+D Y T + L+ +I++
Sbjct: 158 SDAYGTAILLIKIIKQ 173
>gi|225163449|ref|ZP_03725765.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
gi|224801949|gb|EEG20229.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
Length = 197
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 71/208 (34%), Gaps = 41/208 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
+ VI+D ET G + Q A VR+ + T + +P D++ +
Sbjct: 2 NLVIFDLETTGFSPRWNDIIQIAAVRL-VDGRISDETFSTYVSPRRPVPDHI-----TEL 55
Query: 61 TGIT---PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD- 116
TGIT A F+R + V T ++ +N RFD + +
Sbjct: 56 TGITDADVADAPETSDALRAFARFVGD---VGPTTLVAHNGHRFDMRFIAESCTLHGLPM 112
Query: 117 -SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
R +D + WP+ ++ L + GI H
Sbjct: 113 RPIR-----------FIDSIWLSKKL------WPAESLHNLDVIVERLGIETGITGHRRH 155
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLY 203
DA+ADV+ L+ ++ + L+
Sbjct: 156 DARADVH-------LLANAVRRMIQNLF 176
>gi|315303836|ref|ZP_07874324.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
ivanovii FSL F6-596]
gi|313627797|gb|EFR96442.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
ivanovii FSL F6-596]
Length = 928
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + D R QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASRDDRIIQFAAC-----FVESGKRLETYATFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVRDAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMNRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ G+ H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
Length = 1449
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 85/248 (34%), Gaps = 60/248 (24%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-----VDRQWEKIESTEVFFCKPADDYLPDPEA- 57
++++D ET G D + A VR V+ +++ P +
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRMHKGNVEGSFDEFIDPG------------HPLSR 469
Query: 58 --VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGIT + +R E E R+ + FS ++ +N FD + N YR +
Sbjct: 470 TTVELTGIT-DEMVRGSKSEEE-VLRLFREFS-EGAILVAHNA-SFDMGFL-NTSYRKYG 524
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+N ++D + P+ F L L+ G+ H
Sbjct: 525 IP---EAENP-----VIDTLELARYLYPE----------FKRFGLGVLSKKFGVSLEQHH 566
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG--MFGAS 233
A D AT L + ++ + K+ + D+ HV G F A+
Sbjct: 567 RAIYDAEATGHLA----------WIFVKEAMEKHGMLLHEDLNR-----HVGGENSFKAA 611
Query: 234 RSNTALIA 241
R A I
Sbjct: 612 RPFHATIL 619
>gi|213162769|ref|ZP_03348479.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
Length = 38
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 3 NHFVIYDYETFGRDVALDRPAQF 25
+ F+ +DYETFG ALDRPAQF
Sbjct: 16 STFLFHDYETFGTHPALDRPAQF 38
>gi|315656881|ref|ZP_07909768.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492836|gb|EFU82440.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 240
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 21/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G + DR A + +R + + P A + G+T +
Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73
Query: 68 ALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+GV E I + ++G+N + FD R+
Sbjct: 74 LQANGVDPRVGLEEVAGIIEETMRRGVPVVGFN-VTFDFAILEAELARHNL-PTLRQRLE 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYA 183
G S ++D + G + L + A + + H+A+ADV A
Sbjct: 132 G-SVGPIVDPLVLDRILD-------RYRKGKRN--LASVCTAYDLPLREDFHNAQADVSA 181
Query: 184 TLALVWLIREKKPKL 198
TL L+ + E+ P+L
Sbjct: 182 TLDLLGAMSERFPEL 196
>gi|50760099|ref|XP_417900.1| PREDICTED: similar to CGI-114 protein [Gallus gallus]
Length = 233
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 21/115 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD----------- 54
V D E G DV D+ + A + D + K D+ L
Sbjct: 40 VWVDLEMTGLDVEKDQILEMACLITDSDLNVLAEGPNLIIKQPDELLDSMSEWCKEHHGK 99
Query: 55 ---PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + I+ Q+A E EF + Q + P C + N++ D +
Sbjct: 100 SGLTKAVKESKISLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 147
>gi|325926745|ref|ZP_08188053.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Xanthomonas perforans 91-118]
gi|325542826|gb|EGD14281.1| DNA polymerase III epsilon subunit-like 3'-5' exonuclease
[Xanthomonas perforans 91-118]
Length = 183
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 34/201 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPAD-DYLPDPEAV 58
++ FV D E G V VD E F+ + D DPEA+
Sbjct: 3 LSEIFVSVDIEASGPIPGEFSLLSIGAVLVD-------RPETSFYLELKPEDTRHDPEAL 55
Query: 59 FITGITPQKALRDGVVEAEFSR---RIHQFFSVPN--TCIIGYNNIRFDDYYSRNIFYR- 112
+TG ++ R+GV R + FS P+ +G N FD + F++
Sbjct: 56 AVTGFEIEELARNGVEPGAAMRKFGQWLSEFSAPSQRPVFVGLNA-AFDWSFVNYYFHKY 114
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + G + D+ + W D S +++ L +
Sbjct: 115 CGENPF------GFTALDIKAFFMGVVGSR-----W----DQTKSSQMEKLLRP---KLT 156
Query: 173 NAHDAKADVYATLALVWLIRE 193
H+A D L +++
Sbjct: 157 GTHNALEDARYQAELFRKLQK 177
>gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
Length = 1463
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 83/225 (36%), Gaps = 46/225 (20%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D + I + + KP +P
Sbjct: 2 YLIFDTETTGLPKNWNAPITDSDNWPRCIQIAWQLHDEMGQVI-EHQDYLVKPDGFDIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-N 113
+A I GI+ A +DGV +E + S ++G N+ FD F+R N
Sbjct: 61 -DAERIHGISTALAEKDGVALSEVLENFNIALSQAK-YVVG-QNVGFDTNIMGAEFHRLN 117
Query: 114 FYDSYRWSWDNGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN---- 167
GN DL L V+ + Q P G FKL L +
Sbjct: 118 I----------GN---DLQELPVLDTCTEKTATLCQLPGGRGGK--FKLPTLTELHKHLF 162
Query: 168 GIEHVNAHDAKADVYATLAL-VWLIREK---------KPKLFEYL 202
G AH+A ADV AT + LIR++ +P F+
Sbjct: 163 GEGFGEAHNATADVEATTRCFLELIRQRVYTKEELDVQPDYFDRF 207
>gi|332876762|ref|ZP_08444520.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332685321|gb|EGJ58160.1| exonuclease [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 256
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 47/196 (23%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGIT 64
V +D ET G ++ DR + ++V + ++ P PE + I GI
Sbjct: 10 VFFDLETTGINITTDRIVELCYIKVYPNGNE--ESKSMRINPEMHI---PESSSAIHGI- 63
Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ V + +++ + ++ G+N+ RFD F R D
Sbjct: 64 ----YDEDVADCPTFKQVARELANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKR 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVNAHD 176
+DV + KL+ L+ A G + NAH
Sbjct: 120 K-------FIDVQNIYH-------------------KLERRTLSAAYKFYCGKDLENAHS 153
Query: 177 AKADVYATLA--LVWL 190
A AD AT + L
Sbjct: 154 ALADTRATYEVLMAQL 169
>gi|253999147|ref|YP_003051210.1| oligoribonuclease [Methylovorus sp. SIP3-4]
gi|253985826|gb|ACT50683.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp.
SIP3-4]
Length = 182
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 63/207 (30%), Gaps = 42/207 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ + D E G DR + A V D + + V +D L D
Sbjct: 6 NNLIWLDMEMSGLLPDSDRILELAAVVTDADLNILGESPVLVVHQSDAVLDGMDAWNKGT 65
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYR 112
G + K + E S+++ +F C N+I D F
Sbjct: 66 HGKSGLIDKVKASTLDEVSASQQMIEFLKQYVPAGKSPMCG---NSICQD-----RRFMA 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDV-MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ + N LDV + A W G G +
Sbjct: 118 RYMPELESYFHYRN-----LDVSVFKELARR-----WKPSIHG-------------GFKK 154
Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198
+ H+A AD+Y ++ + RE KL
Sbjct: 155 ASKHEALADIYESIEELKYYREHFLKL 181
>gi|253991561|ref|YP_003042917.1| oligoribonuclease [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|211638439|emb|CAR67061.1| oligoribonuclease (ec 3.1.-.-) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783011|emb|CAQ86176.1| oligoribonuclease [Photorhabdus asymbiotica]
Length = 181
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G D DR + A + D +
Sbjct: 6 HNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAE 42
>gi|169347300|ref|ZP_02866238.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
gi|169293917|gb|EDS76050.1| hypothetical protein CLOSPI_00015 [Clostridium spiroforme DSM 1552]
Length = 261
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 32/187 (17%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPEA 57
M N +V+ D+ET G + D Q A V D + ++ CKP + P A
Sbjct: 1 MKNKYVVLDFETTGVNRYHNDEVVQVAIVNQDDEVLINEL-------CKPKHHF-SWPSA 52
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I GI+P ++D + + RI + F N+ I NI F+ +N D
Sbjct: 53 QRINGISP-LMVKDKLCFESYIDRIIEIFD--NSEFIVCYNIAFEQGMLKNY----GIDI 105
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ + + + + R + G +W S L A G AHDA
Sbjct: 106 SKYVFKDPMKDFAYIYGERGYH----GGYKWQS---------LSTCAKYFGYN-FAAHDA 151
Query: 178 KADVYAT 184
DV AT
Sbjct: 152 LEDVKAT 158
>gi|260663059|ref|ZP_05863952.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
fermentum 28-3-CHN]
gi|260552680|gb|EEX25680.1| DnaQ family exonuclease/DinG family helicase [Lactobacillus
fermentum 28-3-CHN]
Length = 946
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G V R Q V V + + I E K + P + +TGI
Sbjct: 18 DLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVV-PLTIEQLTGIKNN 72
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ E + + + T + +N + FD + F R
Sbjct: 73 DVKDAPLFE-DVAPTLKSLLDD--TIFVAHN-VNFDFPFLNAEFERAGEAPL-------- 120
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
+D + P SF+L+DL I+H H A +D AT
Sbjct: 121 -TIPAIDTVTLSQILMPTA----------PSFRLRDLTSYLAIDHDQPHSAVSDAVATAH 169
Query: 185 --LALVWLIRE 193
+ L+ + +
Sbjct: 170 LLIELLKRLAD 180
>gi|229084648|ref|ZP_04216916.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-44]
gi|228698671|gb|EEL51388.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-44]
Length = 930
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 29/189 (15%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQVAAVVVEDG--EILEIFSSFVNPERE-IP-PFIT 56
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI + ++ + + + I + + +N + FD + R + Y
Sbjct: 57 ELTGID-EDLVKQAPLFCDVAPMIVELLQ--GAYFVAHN-VHFDWNFLREELKQAGYGEV 112
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+D + P S+KL+DLA + +EH H A
Sbjct: 113 NCQK---------IDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHRAD 153
Query: 179 ADVYATLAL 187
+D T L
Sbjct: 154 SDALVTAEL 162
>gi|196248636|ref|ZP_03147336.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
G11MC16]
gi|196211512|gb|EDY06271.1| DnaQ family exonuclease/DinG family helicase [Geobacillus sp.
G11MC16]
Length = 911
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M FVI D ET G DR Q V D ++ FF + P +
Sbjct: 1 MAMRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGS--IVKRFASFF---NPE---QPIPL 52
Query: 59 FITGIT-PQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
FI +T + +G A+ + I + +N + FD + + R +
Sbjct: 53 FIQQLTNIDEQTVEGAPLFADKADEITAMM--EGAYFVAHN-VDFDLPFLQAELERAGWP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +D + I P+ + S+KL DLA G+ H H
Sbjct: 110 PF---------TGPTIDTVELAR------IVLPTAE----SYKLGDLAKQLGLHHDRPHQ 150
Query: 177 AKADVYATLAL 187
A +D T L
Sbjct: 151 ADSDAEVTAKL 161
>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
Length = 1437
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 69/180 (38%), Gaps = 26/180 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I+D ET G D+ Q + V++ + +++ + F + + + +TGIT
Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKM-KNGVVLDTFDQF---INPGFPLSEQTINLTGIT 465
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+++ EAE + QF++ T + G+N I+FD + + +
Sbjct: 466 -DDLVKNSKPEAEVLKMFQQFYA--GTILAGHNVIKFDYGFVNHALAVHKLPKINTL--- 519
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ G + L L+ + + H A D AT
Sbjct: 520 ------VIDTLNLARWLYPNF--------GRYT--LDFLSKKFSVNLEHHHRAIDDSTAT 563
>gi|313201249|ref|YP_004039907.1| exonuclease rnase t and DNA polymerase III [Methylovorus sp. MP688]
gi|312440565|gb|ADQ84671.1| Exonuclease RNase T and DNA polymerase III [Methylovorus sp. MP688]
Length = 182
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 63/207 (30%), Gaps = 42/207 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ + D E G DR + A V D + + V +D L D
Sbjct: 6 NNLIWLDMEMSGLLPDSDRILELAAVVTDADLNILGESPVLVVHQSDAVLDGMDAWNKGT 65
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYR 112
G + K + E S+++ +F C N+I D F
Sbjct: 66 HGKSGLIDKVKASTLDEVSASQQMIEFLKQFVPAGKSPMCG---NSICQD-----RRFMA 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDV-MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ + N LDV + A W G G +
Sbjct: 118 RYMPELESYFHYRN-----LDVSVFKELARR-----WKPSIHG-------------GFKK 154
Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198
+ H+A AD+Y ++ + RE KL
Sbjct: 155 ASKHEALADIYESIEELKYYREHFLKL 181
>gi|114332250|ref|YP_748472.1| oligoribonuclease [Nitrosomonas eutropha C91]
gi|122313081|sp|Q0ADS5|ORN_NITEC RecName: Full=Oligoribonuclease
gi|114309264|gb|ABI60507.1| Exonuclease, RNase T and DNA polymerase III [Nitrosomonas eutropha
C91]
Length = 181
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 54/209 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
+N+ + D E G + D + A V D Q + V + P++V
Sbjct: 5 SNNLIWIDMEMTGLNPNTDCIIEIALVVTDAQLNTVAEAPVL-------VISQPDSVLNG 57
Query: 60 -------ITGIT--PQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDY 104
G + K + EAE R+ F + + C N+I D
Sbjct: 58 MDKWNQSTHGKSGLIDKVKASTLSEAEAEARMLAFLAPYVPADISPMCG---NSICQD-- 112
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R R + N D+ + + P+
Sbjct: 113 --RRFLARCM-PQLEAYFHYRN--LDVSTLKELAKRWKPE-------------------- 147
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIRE 193
+A G H+A AD+Y ++ + R+
Sbjct: 148 VAQGFNKQGKHEALADIYDSIEELKHYRQ 176
>gi|296100932|ref|YP_003611078.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295055391|gb|ADF60129.1| oligoribonuclease [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 181
Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G D DR + A + D + +DD L
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQL 55
>gi|138895754|ref|YP_001126207.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Geobacillus thermodenitrificans NG80-2]
gi|134267267|gb|ABO67462.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
Length = 911
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M FVI D ET G DR Q V D ++ FF + P +
Sbjct: 1 MAMRFVIIDLETTGNVPKKGDRIIQLGMAVVEDGS--IVKRFASFF---NPE---QPIPL 52
Query: 59 FITGIT-PQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
FI +T + +G A+ + I + +N + FD + + R +
Sbjct: 53 FIQQLTNIDEQTVEGAPLFADKADEITAMM--EGAYFVAHN-VDFDLPFLQAELERAGWP 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +D + I P+ + S+KL DLA G+ H H
Sbjct: 110 PF---------TGPTIDTVELAR------IVLPTAE----SYKLGDLAKQLGLHHDRPHQ 150
Query: 177 AKADVYATLAL 187
A +D T L
Sbjct: 151 ADSDAEVTAKL 161
>gi|321311709|ref|YP_004203996.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis BSn5]
gi|320017983|gb|ADV92969.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis BSn5]
Length = 931
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 36/196 (18%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
FV+ D ET G D+ Q A V ++ +I + P +P A +T
Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNKS-IP---AFIEQLT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q + EA + + Q + +N I FD + + ++ +
Sbjct: 60 GISNQMVENEQPFEA-VAEEVFQLLD--GAYFVAHN-IHFDLGFVKYELHKAGF------ 109
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++LD + P G +KL +L+ + H H A +D
Sbjct: 110 QLPDC---EVLDTVELSRIVFP----------GFEGYKLTELSEELQLRHDQPHRADSDA 156
Query: 182 YAT----LALVWLIRE 193
T L ++ +R+
Sbjct: 157 EVTGLIFLEILEKLRQ 172
>gi|296272299|ref|YP_003654930.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
7299]
gi|296098846|gb|ADG94796.1| DNA polymerase III subunit epsilon [Arcobacter nitrofigilis DSM
7299]
Length = 209
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/185 (19%), Positives = 56/185 (30%), Gaps = 26/185 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N +V D ET G + D V + + T + KP+D+ +++ I
Sbjct: 29 NEYVCLDCETTGLNPKKDEILSIGAVIIKENKVLMSKTFNIYVKPSDNI--STQSILIHR 86
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFD-DYYSRNI-FYRNFYDSYR 119
I P E I++ + I+GY I+FD SR Y
Sbjct: 87 IRPIDLENAIDPE----EAIYELLKFIGSRVIVGY-YIKFDIAIISRYTKKYIGIKLP-- 139
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
NS ++ + D K + I + HDA
Sbjct: 140 ------NSSIEVSSMYYRTKKRRSDY--------EFVDLKFDTIMKELDIPLLGKHDALN 185
Query: 180 DVYAT 184
D T
Sbjct: 186 DAIMT 190
>gi|291484662|dbj|BAI85737.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. natto BEST195]
Length = 931
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 36/196 (18%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
FV+ D ET G D+ Q A V ++ +I + P +P A +T
Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNKS-IP---AFIEQLT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q + EA + + Q + +N I FD + + ++ +
Sbjct: 60 GISNQMVENEQPFEA-VAEEVFQLLD--GAYFVAHN-IHFDLGFVKYELHKAGF------ 109
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++LD + P G +KL +L+ + H H A +D
Sbjct: 110 QLPDC---EVLDTVELSRIVFP----------GFEGYKLTELSEELQLRHDQPHRADSDA 156
Query: 182 YAT----LALVWLIRE 193
T L ++ +R+
Sbjct: 157 EVTGLIFLEILEKLRQ 172
>gi|254392979|ref|ZP_05008143.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|197706630|gb|EDY52442.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
Length = 240
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 57/198 (28%), Gaps = 30/198 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFITGITPQ 66
+D ET G D R A V A +A I GIT +
Sbjct: 11 FDLETTGTDPREARIVTAAVVEARA-----GEPVRRRTWLADPGVRIPAQASAIHGITSE 65
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFD-----DYYSRNIFYRNFYDSY 118
+A +G E + + ++ YN FD R
Sbjct: 66 RAAAEGRPAREVADEVAAELCGYWARGVPVVAYNA-AFDLSLLAAEIRRYGL------PS 118
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
G ++D A G + L+ ++ G+ +AHDA
Sbjct: 119 LSDRLGGRPTGPVIDPYTIDRAVD-------RYRKGKRT--LEAVSAEYGVPLEDAHDAT 169
Query: 179 ADVYATLALVWLIREKKP 196
AD A + + + + P
Sbjct: 170 ADALAAVRVAGALALRHP 187
>gi|16079297|ref|NP_390121.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. subtilis str. 168]
gi|221310156|ref|ZP_03592003.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. subtilis str. 168]
gi|221314478|ref|ZP_03596283.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221319400|ref|ZP_03600694.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323676|ref|ZP_03604970.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. subtilis str. SMY]
gi|1706437|sp|P54394|DING_BACSU RecName: Full=Probable ATP-dependent helicase dinG homolog
gi|1146243|gb|AAB38451.1| 22.4% identity with Escherichia coli DNA-damage inducible protein
...; putative [Bacillus subtilis subsp. subtilis str.
168]
gi|2634658|emb|CAB14156.1| damage inducible ATP-dependent helicase [Bacillus subtilis subsp.
subtilis str. 168]
Length = 931
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 36/196 (18%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
FV+ D ET G D+ Q A V ++ +I + P +P A +T
Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNKS-IP---AFIEQLT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q + EA + + Q + +N I FD + + ++ +
Sbjct: 60 GISNQMVENEQPFEA-VAEEVFQLLD--GAYFVAHN-IHFDLGFVKYELHKAGF------ 109
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++LD + P G +KL +L+ + H H A +D
Sbjct: 110 QLPDC---EVLDTVELSRIVFP----------GFEGYKLTELSEELQLRHDQPHRADSDA 156
Query: 182 YAT----LALVWLIRE 193
T L ++ +R+
Sbjct: 157 EVTGLIFLEILEKLRQ 172
>gi|184155667|ref|YP_001844007.1| helicase [Lactobacillus fermentum IFO 3956]
gi|183227011|dbj|BAG27527.1| helicase [Lactobacillus fermentum IFO 3956]
Length = 943
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 61/191 (31%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G V R Q V V + + I E K + P + +TGI
Sbjct: 15 DLETTGTSVKTGSRIIQIGCVLV-QDGQVINEFET---KINPRTVV-PLTIEQLTGIKNN 69
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ E + + + T + +N + FD + F R
Sbjct: 70 DVKDAPLFE-DVAPTLKSLLDD--TIFVAHN-VNFDFPFLNAEFERAGEAPL-------- 117
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
+D + P SF+L+DL I+H H A +D AT
Sbjct: 118 -TIPAIDTVTLSQILMPTA----------PSFRLRDLTSYLAIDHDQPHSAVSDAVATAH 166
Query: 185 --LALVWLIRE 193
+ L+ + +
Sbjct: 167 LLIELLKRLAD 177
>gi|295098321|emb|CBK87411.1| Oligoribonuclease (3'->5' exoribonuclease) [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 181
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G D DR + A + D + +DD L
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDDQL 55
>gi|150025497|ref|YP_001296323.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
gi|149772038|emb|CAL43514.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
JIP02/86]
Length = 256
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 41/205 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+T +D ET G D+ DR + + ++ + ++ + P +P P +
Sbjct: 5 LTRPICFFDLETTGIDIGKDRIVEISVFKIFPNGN--KESKTWLVNPT---IPIPAQTTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GIT +K + E + +++ + + G+N+ RFD R D
Sbjct: 60 VHGITDEKVANEPTF-NELASQVYNMIKDSD--LAGFNSDRFDIPLLAEELLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
G D+ V K+++ L+ A G N
Sbjct: 114 -FDMKGRVSVDVQTVFH----------------------KMEERTLSAALKFYTGKSLEN 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A+AD AT ++ ++ P+L
Sbjct: 151 AHSAEADTMATYEILKAQLDRYPEL 175
>gi|332976806|gb|EGK13634.1| DNA polymerase III PolC [Desmospora sp. 8437]
Length = 1099
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 27/182 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G D + A V+V + E I+ E F +TG
Sbjct: 414 DTYVVFDVETTGLSAVHDEIIELAAVKV-KDGEIIDRFESF---INPHRKLTATITELTG 469
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + D +E R +F T ++ +N RFD + + +
Sbjct: 470 IT-DEMVVDAPELSEVLPRYLEFI--EGTVLVAHNA-RFDMGFLQAACKKTGCQPVDHP- 524
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+LD + P + +L L IE H A D
Sbjct: 525 --------VLDTLELGRFLYPRL----------KNHRLNTLCKQFDIELTQHHRAIYDAE 566
Query: 183 AT 184
AT
Sbjct: 567 AT 568
>gi|332703188|ref|ZP_08423276.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
str. Walvis Bay]
gi|332553337|gb|EGJ50381.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio africanus
str. Walvis Bay]
Length = 246
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/200 (23%), Positives = 69/200 (34%), Gaps = 33/200 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
F + D E G D D VR+ I+ ++ L P+A I I
Sbjct: 49 FTVLDTELTGMDHRRDEIVSIGAVRIRG--MAIQPGANWYAVVRPSCL--PKACTLIHRI 104
Query: 64 TPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TP + + EF+ + Q I+G++ + D + R
Sbjct: 105 TPSEVEAAPELSDVLPEFADYLGQSL------IVGHH-VGMDAAFLNRACKRILGGPMA- 156
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG---ATSFKLQDLALANGIEHVNAHDA 177
N LD MR + + +W S D S+ L DLA G+ AH+A
Sbjct: 157 ---NPC-----LDTMRLAQVYEEE--RWVSYYDRYNLRVSYNLTDLAAQYGLPSFPAHNA 206
Query: 178 KAD----VYATLALVWLIRE 193
+D Y L LV +R
Sbjct: 207 LSDAMQAAYLFLFLVRKLRS 226
>gi|332290039|ref|YP_004420891.1| oligoribonuclease [Gallibacterium anatis UMN179]
gi|330432935|gb|AEC17994.1| oligoribonuclease [Gallibacterium anatis UMN179]
Length = 182
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D DR + A + D+ + V K D L
Sbjct: 6 QNLIWIDLEMTGLDPNKDRIIEIATIVTDKNLNILAEGPVLAIKQDDKIL 55
>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
Length = 1449
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 85/248 (34%), Gaps = 60/248 (24%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-----VDRQWEKIESTEVFFCKPADDYLPDPEA- 57
++++D ET G D + A VR V+ +++ P +
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRMHKGNVEGSFDEFIDPG------------HPLSR 469
Query: 58 --VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGIT + +R E E R+ + FS ++ +N FD + N YR +
Sbjct: 470 TTVELTGIT-DEMVRGSKSEEE-VLRLFREFS-EGAILVAHNA-SFDMGFL-NTSYRKYG 524
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+N ++D + P+ F L L+ G+ H
Sbjct: 525 IP---EAENP-----VIDTLELARYLYPE----------FKRFGLGVLSKKFGVSLEQHH 566
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG--MFGAS 233
A D AT L + ++ + K+ + D+ HV G + A+
Sbjct: 567 RAIYDAEATGHLA----------WIFVKEAMEKHDMLLHEDLNR-----HVGGENSYKAA 611
Query: 234 RSNTALIA 241
R A I
Sbjct: 612 RPFHATIL 619
>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
Length = 1449
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 43/196 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-----VDRQWEKIESTEVFFCKPADDYLPDPEA- 57
++++D ET G D + A VR V+ +++ P +
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRMHKGNVEASFDEFIDPG------------HPLSR 469
Query: 58 --VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGIT + +R E E R+ + FS ++ +N FD + N YR +
Sbjct: 470 TTVELTGIT-DEMVRGSKSEEE-VLRLFREFS-EGAILVAHNA-SFDMGFL-NTSYRKYG 524
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+N ++D + P+ F L L+ G+ H
Sbjct: 525 IP---EAENP-----VIDTLELARYLYPE----------FKRFGLGVLSKKFGVSLEQHH 566
Query: 176 DAKADVYATLALVWLI 191
A D AT L W+
Sbjct: 567 RAIYDAEATGHLAWIF 582
>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
Length = 1449
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 43/196 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-----VDRQWEKIESTEVFFCKPADDYLPDPEA- 57
++++D ET G D + A VR V+ +++ P +
Sbjct: 422 TYIVFDVETTGLSAVYDTIIELAAVRMHKGNVEASFDEFIDPG------------HPLSR 469
Query: 58 --VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGIT + +R E E R+ + FS ++ +N FD + N YR +
Sbjct: 470 TTVELTGIT-DEMVRGSKSEEE-VLRLFREFS-EGAILVAHNA-SFDMGFL-NTSYRKYG 524
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+N ++D + P+ F L L+ G+ H
Sbjct: 525 IP---EAENP-----VIDTLELARYLYPE----------FKRFGLGVLSKKFGVSLEQHH 566
Query: 176 DAKADVYATLALVWLI 191
A D AT L W+
Sbjct: 567 RAIYDAEATGHLAWIF 582
>gi|24372183|ref|NP_716225.1| oligoribonuclease [Shewanella oneidensis MR-1]
gi|29611787|sp|Q8EJ78|ORN_SHEON RecName: Full=Oligoribonuclease
gi|24346089|gb|AAN53670.1|AE015506_5 oligoribonuclease [Shewanella oneidensis MR-1]
Length = 181
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 50/212 (23%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
N+ + D E G + +DR + A + D++ I V +D+ L A
Sbjct: 5 ANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVL----AAMDD 60
Query: 60 ----ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS- 106
G + ++ V EAE + F + C N++ D +
Sbjct: 61 WNQKHHGESGLIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMCG---NSVGQDRRFLN 117
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R + R D + + D+ V + +SP+ +
Sbjct: 118 RYM--RELEDYFHY------RNLDVSTVKELVKRWSPETMA------------------- 150
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G + N H A D+ ++A + R K K+
Sbjct: 151 -GFKKQNTHQALQDIQESIAELQYYRSKVFKI 181
>gi|322514990|ref|ZP_08068002.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
gi|322119043|gb|EFX91207.1| oligoribonuclease [Actinobacillus ureae ATCC 25976]
Length = 183
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + + D E G D +R + A + D+ + V DD L
Sbjct: 6 SQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLTVHQPDDLL 56
>gi|289435248|ref|YP_003465120.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171492|emb|CBH28036.1| ATP-dependent helicase DinG [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 928
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYATFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKDAPLFE-DVAPIIAGLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ G+ H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHQADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|167032729|ref|YP_001667960.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
GB-1]
gi|166859217|gb|ABY97624.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
GB-1]
Length = 203
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 1 MTNHFVIYDYETFG--------RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M+ ++D ET G + + E ++S E +P +
Sbjct: 1 MSELICVFDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAM-VRPDGWSI 59
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY-NNIRFDDYYSRNIFY 111
P+ AV I GIT + AL G+ E + I F ++ N + +N+ FDD R
Sbjct: 60 PNEVAV-IHGITNELALEHGIPE---ALAIEGFLNIWNQAGLRVAHNVSFDDRIMRIALK 115
Query: 112 R 112
R
Sbjct: 116 R 116
>gi|88858891|ref|ZP_01133532.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
gi|88819117|gb|EAR28931.1| oligoribonuclease [Pseudoalteromonas tunicata D2]
Length = 181
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/207 (14%), Positives = 64/207 (30%), Gaps = 42/207 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
++ + D E G + D+ + A + D + V +D+ L + +
Sbjct: 6 SNLIWLDLEMTGLEPKTDKILEIATIVTDCDLNILAEGPVIAVHQSDELLDGMDEWCVKQ 65
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFY 111
+G+T + + E + + F C N+I D F
Sbjct: 66 HGGSGLT-ARCRQSSFTEQDAIEQTISFLEKWVPKGKSPMCG---NSIGQD-----RRFL 116
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ + N D+ + + P+ + N I+
Sbjct: 117 NAYMPELEDYFHYRN--LDISTIKELARRWKPEVL--------------------NSIKK 154
Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198
H A D++ ++A + + R+ KL
Sbjct: 155 KGVHLALEDIHESIAELRVYRQDFFKL 181
>gi|254672653|emb|CBA06469.1| oligoribonuclease [Neisseria meningitidis alpha275]
Length = 215
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 33 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 92
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 93 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 123
>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 1421
Score = 51.7 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 42/201 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYLPDPEAVF- 59
TN FV++D ET G +D + V + ++ V F + + + P+ V
Sbjct: 403 TNSFVVFDIETTGFSPQVDEITEIGAV------KIVDGVIVDRFSQLVNPMIKIPDRVVE 456
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRN-IFYRNFYD 116
+TGI+ + ++ F+ N+ ++ +N FD + R + N
Sbjct: 457 LTGISNDFVKDEPT-----IDKVIVDFNDFCKNSVLVAHNA-GFDISFIRRDMLKYNLSF 510
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ +LD + A D F L L+ G+ VNAH
Sbjct: 511 NFT-----------VLDTLSLARAIIKDI----------KRFNLTALSKKLGVSLVNAHR 549
Query: 177 AKADVYAT----LALVWLIRE 193
A D AT + ++ ++++
Sbjct: 550 AVNDAEATAEVFIKMLDILKK 570
>gi|313887234|ref|ZP_07820929.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
gi|312923325|gb|EFR34139.1| exonuclease [Porphyromonas asaccharolytica PR426713P-I]
Length = 255
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 31/191 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
V++D E G D+ DR + + V + + +P P E+ I GI
Sbjct: 9 LVVFDIEATGLDITNDRIIE----LTILKLMPDGERIVRTRRFNPE-MPIPAESTAIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + + GYN+ RFD F R + S
Sbjct: 64 TDEDVRD--CPPFRACAKSLAELID-GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQ 120
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +DV + P + +GA F EH+ AH A+AD A
Sbjct: 121 H-------IDVQTIFHKMEPRTL------EGAVRFYCHR-------EHIGAHGAEADTIA 160
Query: 184 TLA--LVWLIR 192
TL L L +
Sbjct: 161 TLDVLLAQLEK 171
>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
Length = 1463
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 69/207 (33%), Gaps = 54/207 (26%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFIT 61
FV++D ET G D + VRV+ + + + LP+ + V IT
Sbjct: 447 SFVVFDIETTGLLKYRDAITEIGAVRVEN-----GEITETYNQLINPERILPE-KIVEIT 500
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYSRNIFYRNF 114
GIT +I + P + I+G N FD + R R
Sbjct: 501 GITDAMLADKP--------KIDEVL--PGFLDFCGDSLIVG-QNTDFDVGFIRENAKRLG 549
Query: 115 --YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+D D L + RA++ D F L +A I
Sbjct: 550 LKFDPI---------YLDTLPMARALF-------------DDMGKFSLDKIARKLDIPAF 587
Query: 173 NAHDAKADVYAT----LALVWLIREKK 195
N H A D AT + + +I E++
Sbjct: 588 NHHRASDDARATAQIFIKMYKMIMEEE 614
>gi|291531228|emb|CBK96813.1| exonuclease, DNA polymerase III, epsilon subunit family
[Eubacterium siraeum 70/3]
Length = 458
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 42/204 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVR-----VDRQ--WEKIESTEVFFCKPADDYLPD 54
++ FV+YD ET G + Q V+ VD +E++ + + +D+
Sbjct: 268 SDTFVVYDLETTGLNSEFHAVIQIGAVKVVDGVVDESQTFEELVNPKYSKVSVSDNI--- 324
Query: 55 PEAVFITGITPQKA-LRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS-RNIF 110
ITGIT ++A V E EF + I + G+NN FD + R
Sbjct: 325 ---TKITGITDEEAKNARQVWEVIPEFVKFIGDDT------LAGFNNAAFDSKFLERAGR 375
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS-PDGIQWPSRDDGATSFKLQDLALANGI 169
+ N N ++D++ YA D L + A GI
Sbjct: 376 HSNIII--------TNKQFDIMK-----YAKRIKKKCNLEINGDE-----LNNYAEYFGI 417
Query: 170 EHVNAHDAKADVYATLALVWLIRE 193
++ AH A +D T + +R+
Sbjct: 418 KNEKAHTALSDAITTAKVYIKLRQ 441
>gi|261345223|ref|ZP_05972867.1| oligoribonuclease [Providencia rustigianii DSM 4541]
gi|282566919|gb|EFB72454.1| oligoribonuclease [Providencia rustigianii DSM 4541]
Length = 180
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPVRDRIIEIATIVTDSNLNILAE 42
>gi|94311510|ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH34]
gi|93355362|gb|ABF09451.1| oligoribonuclease [Cupriavidus metallidurans CH34]
Length = 205
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 18/98 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N+ V D E G DR + A V D + + V + P+AV
Sbjct: 13 NNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVL-------VIHQPDAVLDAM 65
Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G + +K + EA+ + F
Sbjct: 66 DNWNKGTHGRSGLIEKVKASTLTEAQAEAELLAFLKRW 103
>gi|311263942|ref|XP_003129926.1| PREDICTED: oligoribonuclease, mitochondrial-like [Sus scrofa]
Length = 237
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTMTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|301782497|ref|XP_002926662.1| PREDICTED: oligoribonuclease, mitochondrial-like [Ailuropoda
melanoleuca]
gi|281353930|gb|EFB29514.1| hypothetical protein PANDA_016351 [Ailuropoda melanoleuca]
Length = 237
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTMTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|149716526|ref|XP_001502237.1| PREDICTED: similar to Oligoribonuclease, mitochondrial precursor
(Small fragment nuclease) (RNA exonuclease 2 homolog)
[Equus caballus]
Length = 237
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTMTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|126165254|ref|NP_001075204.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
gi|158512836|sp|A2VE52|ORN_BOVIN RecName: Full=Oligoribonuclease, mitochondrial; AltName: Full=RNA
exonuclease 2 homolog; AltName: Full=Small fragment
nuclease; Flags: Precursor
gi|126010762|gb|AAI33576.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae) [Bos taurus]
gi|296480277|gb|DAA22392.1| oligoribonuclease, mitochondrial precursor [Bos taurus]
Length = 237
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + +T Q+A E EF + Q + P C + N++ D +
Sbjct: 99 EHHGKSGLTKAVKESTMTLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 151
>gi|313632670|gb|EFR99647.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
seeligeri FSL N1-067]
Length = 928
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYATFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKDAPLFE-DVAPIIAGLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ G+ H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHQADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
oeni PSU-1]
Length = 1437
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 69/180 (38%), Gaps = 26/180 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I+D ET G D+ Q + V++ + +++ + F + + + +TGIT
Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKM-KNGVVLDTFDQF---INPGFPLSEQTINLTGIT 465
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+++ EAE + QF++ T + G+N I+FD + + +
Sbjct: 466 -DDLVKNSKPEAEVLKMFQQFYAR--TILAGHNVIKFDYGFVNHALAVHKLPKINTL--- 519
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ G + L L+ + + H A D AT
Sbjct: 520 ------VIDTLNLARWLYPNF--------GRYT--LDFLSKKFSVNLEHHHRAIDDSTAT 563
>gi|312891424|ref|ZP_07750941.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
paludis DSM 18603]
gi|311296118|gb|EFQ73270.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
paludis DSM 18603]
Length = 380
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 37/188 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+D ET G ++ +DR + + ++ + +V K + E+ I GI
Sbjct: 29 LAFFDLETTGTNIGVDRIVEISVIK----LNPDGTDDVKTWKINPEMPISIESSMIHGIY 84
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + V + + I F + + + GYN+ RFD F R + + +
Sbjct: 85 EEHLIDAPVFKT-AAAEISDFIADSD--LAGYNSNRFDIPMLMEEFLRVGH-PFDIEQRH 140
Query: 125 GNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
++ +RA Y F G + +NAH A+A
Sbjct: 141 FIDVQNIFHQMEQRTLRAAYQFYC------------------------GKDIINAHSAEA 176
Query: 180 DVYATLAL 187
D AT+ +
Sbjct: 177 DTRATMEV 184
>gi|260912251|ref|ZP_05918803.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
oral taxon 472 str. F0295]
gi|260633685|gb|EEX51823.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella sp.
oral taxon 472 str. F0295]
Length = 284
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEA 57
+T +++D ET G D+ DR Q + ++V ++ E F KP D + +
Sbjct: 5 LTRPLIVFDLETTGLDLVNDRIIQISYIKVYPDGKE--ERENLFVYPGKPIPDEVSE--- 59
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT E E + R+++ F G+N+ FD F R D
Sbjct: 60 --LTGITTDLVEDAPTFE-ELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEID 113
>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
Length = 849
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
VI+D E+ G DV D Q A + V+ ++ + F KP+ ++ + G
Sbjct: 495 IVIFDVESTGLDVTQDEVIQIAAIELVNGEYT---RSFERFIKPSHSV---GDSALVHGF 548
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ G E +R + F V +IG+N +++D + R
Sbjct: 549 SDDYLNEHG----EEAREVFLQFQAFVEGALLIGHN-VQYDLKIVSSQMNR-----LGLM 598
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++N +D LD++R +Y PD + KL ++ G+ H H+A D+
Sbjct: 599 FENSMGYYDTLDIVRRLY---PDL----------KNHKLDTVSAYVGVSHEPTHNAMDDI 645
Query: 182 YAT 184
AT
Sbjct: 646 LAT 648
>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
Length = 849
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
VI+D E+ G DV D Q A + V+ ++ + F KP+ ++ + G
Sbjct: 495 IVIFDVESTGLDVTQDEVIQIAAIELVNGEYT---RSFERFIKPSHSV---GDSALVHGF 548
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ G E +R + F V +IG+N +++D + R
Sbjct: 549 SDDYLNEHG----EEAREVFLQFQAFVEGALLIGHN-VQYDLKIVSSQMNR-----LGLM 598
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++N +D LD++R +Y PD + KL ++ G+ H H+A D+
Sbjct: 599 FENSMGYYDTLDIVRRLY---PDL----------KNHKLDTVSAYVGVSHEPTHNAMDDI 645
Query: 182 YAT 184
AT
Sbjct: 646 LAT 648
>gi|317493562|ref|ZP_07951983.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918505|gb|EFV39843.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 181
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 59/196 (30%), Gaps = 44/196 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
+ + D E G + +DR + A + D + V +D+ L A+
Sbjct: 6 TNLIWIDLEMTGLNPEVDRIIEIATLVTDANLNILAEGPVIAVHQSDEQL----ALMDEW 61
Query: 60 ----ITGI-TPQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIF 110
TG ++ EA +++ +F + G N++ D R
Sbjct: 62 NVRTHTGSGLVERVKASTFDEATAAQKTIEFLQQWVPAGVSPICG-NSVGQD----RRFL 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+R + + D+ + + P+ + G +
Sbjct: 117 FRYM--PELEQYFHY-RYLDVSTLKELARRWKPEILA--------------------GFK 153
Query: 171 HVNAHDAKADVYATLA 186
H A D+ ++A
Sbjct: 154 KQGTHQALDDIRESVA 169
>gi|300813469|ref|ZP_07093813.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300512418|gb|EFK39574.1| CRISPR-associated endoribonuclease Cas2 [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 297
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 29/190 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V+ D ET G D + + V+V + ++E+ + + K + + D +TGI
Sbjct: 130 YVVIDIETDGLDFDKNLIIEIGAVKVENEKFEEFTR-LIKYNKKLNSTIKD-----LTGI 183
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ +G+ E + + + + F I+GYN +D + F +
Sbjct: 184 DEKLLNEEGI-ELKEALSLFKTFIKDYP-ILGYN-TSYDIKFLNKSFLDLGMEPIA---- 236
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N +DL+ ++ P+ +KLQ A GI H A D
Sbjct: 237 --NKVYDLMTFVKKEKILLPN-------------YKLQTALQAYGINKQVPHRALEDSRL 281
Query: 184 TLALVWLIRE 193
T L + +
Sbjct: 282 TAELSTKVNK 291
>gi|255324960|ref|ZP_05366068.1| conserved hypothetical protein [Corynebacterium
tuberculostearicum SK141]
gi|255298020|gb|EET77329.1| conserved hypothetical protein [Corynebacterium
tuberculostearicum SK141]
Length = 98
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G + DR + A VR D + ++S D AV T T
Sbjct: 31 FVVIDTETTGFNKRYDRIIELAAVRADAYFNPVDSWHTL---LTPDT----NAVSATRGT 83
Query: 65 P 65
P
Sbjct: 84 P 84
>gi|332299738|ref|YP_004441659.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
asaccharolytica DSM 20707]
gi|332176801|gb|AEE12491.1| Exonuclease RNase T and DNA polymerase III [Porphyromonas
asaccharolytica DSM 20707]
Length = 255
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 31/191 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
V++D E G D+ DR + + V + + +P P E+ I GI
Sbjct: 9 LVVFDIEATGLDITNDRIIE----LTILKLMPDGERIVRTRRFNPE-MPIPAESTAIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + + GYN+ RFD F R + S
Sbjct: 64 TDEDVRD--CPPFRACAKSLAELID-GCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLSRQ 120
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +DV + P + +GA F EH+ AH A+AD A
Sbjct: 121 H-------IDVQTIFHKMEPRTL------EGAVRFYCHR-------EHIGAHGAEADTIA 160
Query: 184 TLA--LVWLIR 192
TL L L +
Sbjct: 161 TLDVLLAQLDK 171
>gi|218190704|gb|EEC73131.1| hypothetical protein OsI_07145 [Oryza sativa Indica Group]
Length = 247
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 43/201 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCK-------PADDYLPDPE 56
V D E G DVA DR + A + D + ++IE ++ + +
Sbjct: 68 LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 127
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYR 112
A +G+T Q+ L+ + E + ++ F I G N + D F +
Sbjct: 128 A---SGLT-QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAG--NSVYVDLL----FLK 177
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
N+ + + D+ +M I+W ++ T K
Sbjct: 178 NYMPQLAAIFSH--VIVDVSSIMALC-------IRWYPKERKRTPQK------------G 216
Query: 173 NAHDAKADVYATLALVWLIRE 193
H A D+ ++A + ++
Sbjct: 217 KKHRAMNDIKESIAELKYYKD 237
>gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
Length = 1461
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/217 (21%), Positives = 71/217 (32%), Gaps = 55/217 (25%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPKNWNAPLTDSDNWPRCIQIAWQVHDEMGNLIE---------NQDYLVQ 52
Query: 55 PEAV-------FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD----- 102
P+ I GI+ A GV E + + + ++G N+ FD
Sbjct: 53 PDGFDIPYDSERIHGISTDLAKEQGVPLDEVLEKFNIAL-QKSKFVVG-QNVGFDLNIMG 110
Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
+ R F + + + V+ + + + P G FKL
Sbjct: 111 AEFIRRDFENSLQE---------------MPVLDTCTEVTANLCKIPGGRGGK--FKLPT 153
Query: 163 LALANGI----EHVNAHDAKADVYATLAL-VWLIREK 194
L + AH+A ADV AT + LIR++
Sbjct: 154 LTELHEFLFEEAFGEAHNATADVEATTRCFLELIRQR 190
>gi|56270497|gb|AAH87528.1| LOC496097 protein [Xenopus laevis]
Length = 223
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 28/149 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D + A + D + + K D L D
Sbjct: 42 MGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIK-QPDELLDGMSDWC 100
Query: 55 ---------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
+AV + IT Q+A E EF I Q + P C + N++ D +
Sbjct: 101 KEHHGKSGLTQAVRESRITLQQA------EYEFLSFIRQH-TPPGVCPLAGNSVHADKKF 153
Query: 106 SRNI---FYRNFYDSYR--WSWDNGNSRW 129
F R+ + + RW
Sbjct: 154 LDKYMPRFMRHLHYRIIDVSTVKELCRRW 182
>gi|332291593|ref|YP_004430202.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
4H-3-7-5]
gi|332169679|gb|AEE18934.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
4H-3-7-5]
Length = 232
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 70/200 (35%), Gaps = 32/200 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T FV++D ET G DR V V +I + D PE+ I
Sbjct: 44 TTRFVVFDTETTGLHYKEDRILSIGAVTVIN--NEISIAQSLELYLKQDIY-KPESAKIH 100
Query: 62 GITPQKALRDG----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
GI LR+G V E E + +F T I+ ++I FD + R
Sbjct: 101 GI-----LRNGSYEQVNEQEAIEKCLEFI---GTDILIGHHIGFDVAVINSALKRAQLGK 152
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI----EHVN 173
+ N D + + P I P ++ T L +LA A I H +
Sbjct: 153 LK------NRVLDTETLYK--RLVHP--INRPLQEKRYT---LDELAEALKIPLHDRHTS 199
Query: 174 AHDAKADVYATLALVWLIRE 193
A DA A + +V +
Sbjct: 200 AGDALITAIAFIKIVKRLNS 219
>gi|225717126|gb|ACO14409.1| Oligoribonuclease, mitochondrial precursor [Esox lucius]
Length = 207
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFF-------------CK 46
M V D E G D+ D+ + A + D + + + CK
Sbjct: 10 MKQRMVWVDLEMTGLDIEKDQIIEMACIITDSELNVLAGGPNLIINTTDELLDGMDDWCK 69
Query: 47 PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E EF I Q + P C + N++ D +
Sbjct: 70 EHHGNSGLTQAVRNSKITLQQA------EYEFLSFIRQH-TPPGQCPLAGNSVHADKKFL 122
>gi|297690291|ref|XP_002822553.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Pongo
abelii]
Length = 222
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92
Query: 61 TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
++ G E EF + Q + P C + N++ D +
Sbjct: 93 --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 136
>gi|297269235|ref|XP_002799845.1| PREDICTED: oligoribonuclease, mitochondrial-like isoform 2 [Macaca
mulatta]
Length = 222
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92
Query: 61 TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
++ G E EF + Q + P C + N++ D +
Sbjct: 93 --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 136
>gi|114640399|ref|XP_001150488.1| PREDICTED: similar to CGI-114 protein isoform 1 [Pan troglodytes]
Length = 222
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS------ 92
Query: 61 TGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
++ G E EF + Q + P C + N++ D +
Sbjct: 93 --MSDWCKEHHGKQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 136
>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
parvum serovar 6 str. ATCC 27818]
gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
parvum serovar 6 str. ATCC 27818]
Length = 1442
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 36/222 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D ET G D +F + + ++I F KP + IT +
Sbjct: 408 TYVIFDIETTGLFPNFDEIIEFGAIIMQNN-KQIGDKIQFLVKPIQQINEN-----ITNL 461
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T Q+ + + + E +I + F N ++ +N I FD + + +
Sbjct: 462 TNISQEMVNNAIDEKTALLKIKEIFD--NHILVAHNGINFDINFINQRLLKWGLEPL--- 516
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179
N + +D + A +P S +L + +++ + AH A
Sbjct: 517 -KNPS-----IDTLMISRAINP-----------FKSHRLGAICKKYEVDYNDEIAHRADY 559
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
D + L + + K LF + N N++ + +
Sbjct: 560 DA---IVLADVFKVMKNNLFND-FGITNLNEINTKLQTVMLK 597
>gi|120436594|ref|YP_862280.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
gi|117578744|emb|CAL67213.1| DNA polymerase III subunit epsilon [Gramella forsetii KT0803]
Length = 258
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 46/220 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +D ET G +++ DR + A ++V + + + P + +P E + I
Sbjct: 5 LTKPICFFDLETTGTNISKDRIVEIAVLKVFPNGN--KESHTWLVNPERE-IPA-EVIAI 60
Query: 61 TGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
GIT E F +++IH + GYN+ RFD R
Sbjct: 61 HGIT----NEKVANEPTFKELAQKIHDLI--KGCDLGGYNSNRFDIPLLVEELLR----- 109
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIEHVN 173
D+ M+ + A D + + T L+ A G E
Sbjct: 110 -----------ADIDFEMKNVVAV--DVQTIFHKKEQRT------LSAAYQFYCGKELEG 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL-----FEYLYDYRNK 208
AH A+AD AT ++ +K L + + R K
Sbjct: 151 AHGAEADTEATYEVLKSQLDKYQDLENDMKWLADFSSRRK 190
>gi|313623167|gb|EFR93428.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
innocua FSL J1-023]
Length = 928
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYSTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIASLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ G+ H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
[Carboxydothermus hydrogenoformans Z-2901]
Length = 1407
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 36/223 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
+D+ET G D + V++ D + ++ S + KP + +TGIT
Sbjct: 397 FDFETSGLSSQRDEIIEIGAVKIFDGEIKETFSVLIRPQKPI-----SAKISELTGITND 451
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
++G+ +F I +F + I+ +N FD + R R ++
Sbjct: 452 LLEKEGL---DFGEAIEKFLRFCDGSILLAHNAAFDYGFLRQALKRLGHE---------- 498
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
++ ++D + + P+ + KL+ + + N H A AD YA
Sbjct: 499 RKFSVVDNLALVRILFPEL----------KNHKLKTITEHLEVSLNNHHRALADSYA--- 545
Query: 187 LVWLIREKKPKLFEY-LYDYRNKNQLR-KLIDIQNMTPLVHVS 227
L + + P+LFE LY + ++ I+ ++ T HVS
Sbjct: 546 LAEVFLKLLPRLFERGLYSLDDLAKINYNYINDRSKT--YHVS 586
>gi|16801079|ref|NP_471347.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria innocua Clip11262]
gi|16414514|emb|CAC97243.1| dinG [Listeria innocua Clip11262]
Length = 928
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYSTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIASLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ G+ H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|47223800|emb|CAF98570.1| unnamed protein product [Tetraodon nigroviridis]
Length = 248
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 25/108 (23%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPD----- 54
M+ V D E G D+ D+ + A + D + + +P D L D
Sbjct: 2 MSQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQP--DELLDGMSEW 59
Query: 55 ----------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC 92
+AV + IT ++A E EF + Q + P C
Sbjct: 60 CKEHHGKSGLTQAVRNSKITLEQA------EYEFLSFVRQH-TPPGQC 100
>gi|313618186|gb|EFR90268.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
innocua FSL S4-378]
Length = 931
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 9 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYSTFLNPEKPIP-AFIQELT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 63 GISPKDVKNAPLFE-DVAPIIASLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 114
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ G+ H H A +D
Sbjct: 115 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHRADSDA 159
Query: 182 YAT 184
T
Sbjct: 160 EVT 162
>gi|261363839|ref|ZP_05976722.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
mucosa ATCC 25996]
gi|288568430|gb|EFC89990.1| exonuclease, DNA polymerase III, epsilon subunit family [Neisseria
mucosa ATCC 25996]
Length = 479
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 31/201 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G ++ DR + A +R D Q V CKP +++ +TGI+ +
Sbjct: 37 DLETTGGNLYQDRVTEVALLRFDGQSVCRYEWLVNPCKPIPEFVAQ-----LTGISNKMV 91
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ E E + ++ ++ +N+ RFD + R+ F R D
Sbjct: 92 KTAPLFE-EIASQLLPLLQ--GAVVVAHNS-RFDYTFLRHEFRRAGID----------FA 137
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA-TLAL 187
L ++ P+ + L + N I N H A DV A + L
Sbjct: 138 APALCTVQLSRRLYPEFYK----------HNLDSIIERNAIAVENRHRAMTDVLALSDYL 187
Query: 188 VWLIREKKPKLFE-YLYDYRN 207
+REK + ++ Y N
Sbjct: 188 EHSLREKNTEDWDNYCRSLMN 208
>gi|224083100|ref|XP_002189554.1| PREDICTED: REX2, RNA exonuclease 2 homolog (S. cerevisiae)
[Taeniopygia guttata]
Length = 232
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G DV D+ + A + D + D+ L
Sbjct: 34 MGQRMVWVDLEMTGLDVEKDQILEMACLITDCDLNVLAEGPNLIINQPDEVLESKSEWCK 93
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + I+ Q+A E EF + Q + P C + N++ D +
Sbjct: 94 EHHGKSGLTKAVKESKISLQQA------EYEFLSFVRQQ-TPPGLCPLAGNSVHADKKFL 146
>gi|210612665|ref|ZP_03289413.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
gi|210151467|gb|EEA82475.1| hypothetical protein CLONEX_01615 [Clostridium nexile DSM 1787]
Length = 234
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/207 (22%), Positives = 71/207 (34%), Gaps = 38/207 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +V++D ET G DV D + ++V + + F D P I
Sbjct: 1 MIKTYVVFDLETTGLDVENDNIIEIGALKVREG-KVTDRFMEF---LKPDMPISPMITGI 56
Query: 61 TGITPQK---ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT + A V +F ++G+N I FD F + +
Sbjct: 57 TGITNEMVKNARDTKTVIRDFVNFCEDH------ILVGHN-IMFD-----YKFMKKYASQ 104
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
Y S++ D L + R ++ S L+ L I + AH A
Sbjct: 105 YGESFEK--KGIDTLKIARKVH-------------KDLESKSLEALCEHYQIVNTAAHRA 149
Query: 178 KADVYATLA----LVWLIREKKPKLFE 200
D AT + EK P +FE
Sbjct: 150 YHDALATAKVYHMMAHYFEEKGPTVFE 176
>gi|163791070|ref|ZP_02185490.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Carnobacterium sp. AT7]
gi|159873626|gb|EDP67710.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Carnobacterium sp. AT7]
Length = 939
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 42/204 (20%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQ-------WEKIESTEVFFCKPADDYLPD 54
+ + + D ET G +VA DR QF V ++ + K +
Sbjct: 5 DTYAVVDIETTGGNVASGDRMIQFGCVLLEGDQVVHRFATNI--NPLTSIPKQIEH---- 58
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+TG++ + + E + + I+ CII +NI+FD + R
Sbjct: 59 -----LTGLSNKTVAQAPYFE-DIAATIYNLLDG---CIIIAHNIQFDYTFLSAELQRCG 109
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + G +D + P +S++L DL IEH N
Sbjct: 110 MPAL---QNKG------IDTVELAQVLLPTE----------SSYRLNDLVSKFNIEHTNP 150
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A +D T L ++++K +L
Sbjct: 151 HQADSDAAVTAELFLVLKQKLKEL 174
>gi|304389634|ref|ZP_07371596.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304327187|gb|EFL94423.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 240
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 21/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G + DR A + +R + + P A + G+T +
Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73
Query: 68 ALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
GV E I ++G+N + FD R+
Sbjct: 74 LQAHGVDPRVGLEEVTGIIAETMRRGVPVVGFN-VTFDFAILEAELARHNL-PTLRQRLE 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYA 183
G S ++D + G + L + A + + H+A+ADV A
Sbjct: 132 G-SVGPIVDPLVLDRILD-------RYRKGKRN--LASVCTAYDLPLREDFHNAQADVSA 181
Query: 184 TLALVWLIREKKPKL 198
TL L+ + E+ P+L
Sbjct: 182 TLDLLGAMSERFPEL 196
>gi|258406595|ref|YP_003199337.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
retbaense DSM 5692]
gi|257798822|gb|ACV69759.1| Exonuclease RNase T and DNA polymerase III [Desulfohalobium
retbaense DSM 5692]
Length = 233
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 38/206 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEA----- 57
F + D E G + VR++ + ++ C P+A
Sbjct: 35 SFCVLDTELTGLRRRHE-IISIGAVRIEHLALKPLDRFYTEVC---------PKAWTKTG 84
Query: 58 VFITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
I I+PQ+ G V E + +IG+N I D + + ++
Sbjct: 85 TLIHRISPQQCQDAPKIGKVLPELIAYLGTSL------LIGHN-IALDLQFLQKACKKHL 137
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
D L + R + R S++LQ+LA A G+ A
Sbjct: 138 GHPLVHP------CIDTLRLARVYEESRWESY--YDRFTLRVSYQLQELAQAYGLPCFPA 189
Query: 175 HDAKADVYAT----LALVWLIREKKP 196
H+A +D T + LV +RE P
Sbjct: 190 HNAASDALQTAYLFVYLVHKLRETHP 215
>gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
Length = 1445
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 72/201 (35%), Gaps = 44/201 (21%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + + P Q A D IE +D+L
Sbjct: 2 YLIFDTETTGLPKSWNAPITDTDNWPRCIQIAWQLHDEMGRVIEH---------NDFLIQ 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
PE A I GI+ + A ++G+ E ++ T + N+ FD
Sbjct: 53 PEGFNIPYDAERIHGISTELAQQEGITLEEGLALFNEVLQK--TKFVVGQNVEFDLNIMG 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F+R + N N L V+ + Q P G FKL L +
Sbjct: 111 CEFHR------LATETNLNQ----LPVLDTCTEKTALLCQIPGGRGGK--FKLPTLTELH 158
Query: 168 ----GIEHVNAHDAKADVYAT 184
GI+ AH+A ADV AT
Sbjct: 159 KHLFGIDFAEAHNATADVEAT 179
>gi|127511493|ref|YP_001092690.1| oligoribonuclease [Shewanella loihica PV-4]
gi|166216587|sp|A3QAD3|ORN_SHELP RecName: Full=Oligoribonuclease
gi|126636788|gb|ABO22431.1| Exonuclease, RNase T and DNA polymerase III [Shewanella loihica
PV-4]
Length = 181
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 44/208 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
+ + D E G + +DR + A + D++ + V ++D L A
Sbjct: 6 TNLIWVDLEMTGLEPEVDRIIEIATIVTDKELNILAEGPVIAIHQSEDVL----AAMDDW 61
Query: 60 ---ITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIF 110
G + + E + + F S + G N+I D +
Sbjct: 62 NQKHHGESGLIDRVRASDFSEQDAIEQTIAFLSEHVPAGVSPMCG-NSIGQDRRFL---- 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
N Y + + + D+ V + + P+ + G +
Sbjct: 117 --NRYMPTLEDYFHYRNI-DVSSVKELVRRWRPEVMD--------------------GFK 153
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
H A D+ ++A + REK K+
Sbjct: 154 KQGTHQALVDIQESIAELRYYREKVFKI 181
>gi|325127521|gb|EGC50447.1| oligoribonuclease [Neisseria meningitidis N1568]
gi|325129519|gb|EGC52346.1| oligoribonuclease [Neisseria meningitidis OX99.30304]
gi|325201497|gb|ADY96951.1| oligoribonuclease [Neisseria meningitidis M01-240149]
gi|325207477|gb|ADZ02929.1| oligoribonuclease [Neisseria meningitidis NZ-05/33]
Length = 187
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|291531551|emb|CBK97136.1| exonuclease, DNA polymerase III, epsilon subunit family
[Eubacterium siraeum 70/3]
Length = 361
Score = 51.3 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 66/193 (34%), Gaps = 44/193 (22%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVFITGITPQ 66
D ET G D + +RV + + KP + ITGIT
Sbjct: 13 DIETTGLSPDNDNIIEIGALRVRDN-KIVADFSQLIKASKPLSKTISQ-----ITGITDD 66
Query: 67 KA-----LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
L D + +F R + N ++G+N I FD + D
Sbjct: 67 MLADAKELDDTLS--DFLRFVD------NDTVVGHN-IAFDANFISKKCVAYGLD----- 112
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKAD 180
+ N D D + A PD S KL+D+ + GI+ H A AD
Sbjct: 113 FKN-----DTYDTLAACKQEYPD-----------VSHKLEDMIIQLGIKDSGIHHRALAD 156
Query: 181 VYATLALVWLIRE 193
Y T +L+ ++
Sbjct: 157 CYHTHSLMTALKN 169
>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
Length = 175
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 27/190 (14%)
Query: 5 FVIYDYETFGRDVALDR---PAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFI 60
V YD ET + +F V V E+++S +P+ L P +V
Sbjct: 2 IVFYDVETT-VPEVKGQGYEILEFGAVVVSARGLEELDSFTTL-VRPSSLALVSPRSVSC 59
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI Q +L E + R+H G+N +RFD+ + F S
Sbjct: 60 NGI-VQDSLVGAPSFLEIADRVHALLH--GRVWAGHNILRFDNLRIKEAF-----ASIGR 111
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ D ++R + A + K+ LA G+ H + AD
Sbjct: 112 AGPEAAGHIDTFPLLRKSFGQR------------AGNLKMATLASYFGL-GKQEHRSLAD 158
Query: 181 VYATLALVWL 190
V + ++ L
Sbjct: 159 VRMNIEVLKL 168
>gi|227892520|ref|ZP_04010325.1| possible DNA-directed DNA polymerase III epsilon subunit
[Lactobacillus ultunensis DSM 16047]
gi|227865641|gb|EEJ73062.1| possible DNA-directed DNA polymerase III epsilon subunit
[Lactobacillus ultunensis DSM 16047]
Length = 370
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 45/201 (22%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
+ F + D ET G QF + + + +++ + + P P++
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCAII--KNLKVVKT----YSFMIN---PHREIPQS 58
Query: 58 VF-ITGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
V +TGI D E +F + +I + N + +N + FD + ++
Sbjct: 59 VVNLTGI----HNEDVAKEKDFKFYAPKIVKILQ--NAVFVAHN-VDFDLPFLNYELTQH 111
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
YD+ N D +++ + + P+ S+KL DL I+H+N
Sbjct: 112 GYDALT------NKAIDTVELAKIAF---------PT----LPSYKLSDLTSQLEIKHLN 152
Query: 174 AHDAKADVYAT-LALVWLIRE 193
H A +D Y T + L+ +I++
Sbjct: 153 PHKADSDAYGTAILLIKIIKQ 173
>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
Length = 1367
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 41/198 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D+ET G D +D + V++ I+ KP+ ++ ITGI
Sbjct: 359 TFVVFDFETTGLDPQVDEIIEIGAVKIKEG-RIIDEYHTLI-KPSGTI--SRKSAEITGI 414
Query: 64 TPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T + + +E EF + V + N FD + R +
Sbjct: 415 TQEMLEGERAIEEVLPEFLEFLEDSILVAH-------NANFDYRFLR--LW--IKKVLGK 463
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W+ D L A + ++ S+ L + G+ H A D
Sbjct: 464 DWEKP--YVDTL-------ALAKSLLR-------LKSYSLDSVVKKLGLGSFRHHRALDD 507
Query: 181 VYAT-------LALVWLI 191
T + ++ I
Sbjct: 508 ARVTAQVFLRFIEMMKKI 525
>gi|218961823|ref|YP_001741598.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
(dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
acidaminovorans]
gi|167730480|emb|CAO81392.1| putative DNA polymerase III, epsilon subunit:DnaQ exonuclease
(dnaQ-like) (DinG-like helicase) [Candidatus Cloacamonas
acidaminovorans]
Length = 960
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 53/220 (24%), Positives = 78/220 (35%), Gaps = 46/220 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA---DDYLPDPEAVFIT 61
FV D ET G + D Q AG+R + E + KP ++ +T
Sbjct: 24 FVAIDIETTGLNSEWDEIIQIAGMRFKGE-EVVNQFVSL-VKPKGKVPKFIEH-----LT 76
Query: 62 GITPQKA-LRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I+PQ+ + E +F I + ++G+N I FD + N
Sbjct: 77 HISPQELKTAPPIKEVLKDFCNFIGD------SILVGHN-IGFDFNFLNQFIVDNGGFPI 129
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N WD ++ R I P D KL L GIE +NAH A
Sbjct: 130 S------NMHWDTAEIGR---------IYLPFTTDH----KLSTLVSFFGIELMNAHQAD 170
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQ 218
AD AT L L Y+ ++ +L+D+
Sbjct: 171 ADALAT---GKLFNA----LTNYILNHYGYMLNARLMDLA 203
>gi|288574409|ref|ZP_06392766.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570150|gb|EFC91707.1| DNA polymerase III, epsilon subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 193
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 65/194 (33%), Gaps = 30/194 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
+ FV D ET G DR + +R + TE F + +P EAV I
Sbjct: 8 SGFVAIDVETTGLSNRWDRIVEIGAIR----FTPGSETESFQTFVSPGRPIPS-EAVAIH 62
Query: 62 GITPQKAL-RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GIT + G+ EA + + F + ++N FD F D+
Sbjct: 63 GITDEMVEGAPGLSEASIA--LASFLKDEEPMV--FHNPSFD---------LGFLDANMR 109
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ W+++ V G + L LA G+ H A D
Sbjct: 110 AIK---GSWNVMPVFDTCGLAR-------KAFPGIKGYSLVALARHFGLSGGGHHRALED 159
Query: 181 VYATLALVWLIREK 194
+ +L LI E
Sbjct: 160 CRYSASLFNLILEA 173
>gi|296314314|ref|ZP_06864255.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
gi|296838975|gb|EFH22913.1| oligoribonuclease [Neisseria polysaccharea ATCC 43768]
Length = 187
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|319639353|ref|ZP_07994104.1| oligoribonuclease [Neisseria mucosa C102]
gi|317399537|gb|EFV80207.1| oligoribonuclease [Neisseria mucosa C102]
Length = 185
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
N+ D E G + DR + A + D + ++V+ +D+ L +
Sbjct: 5 ANNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDSMDEWNTA 64
Query: 61 ----TGITPQKALRDGVVEAEFSRRIHQFFSVP 89
TG+T Q+ + EAE + + F S
Sbjct: 65 THGRTGLT-QRVRESTLTEAEVEQNLLDFMSAW 96
>gi|332291046|ref|YP_004429655.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
4H-3-7-5]
gi|332169132|gb|AEE18387.1| Exonuclease RNase T and DNA polymerase III [Krokinobacter diaphorus
4H-3-7-5]
Length = 257
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/223 (20%), Positives = 78/223 (34%), Gaps = 48/223 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+T +D ET G +VA DR + + ++V E F + +P P A
Sbjct: 5 ITRPICFFDLETTGINVAKDRIVEISILKVFPD----GREEEFTERINP-TVPIPAATTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ GI+ + F+ R + + + + G+N+ RFD R+ D
Sbjct: 60 VHGISDADVVDK----PTFAARAKDVYDIIKDADLAGFNSNRFDIPLLVEELLRSGID-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN------GIEHV 172
+ N N +DV + K++ L G +
Sbjct: 114 -FDMKNRN----AIDVQNIFH-------------------KMEQRTLVAAYKFYCGKDLT 149
Query: 173 NAHDAKADVYATLALVWLIREKKPKL-----FEYLYDYRNKNQ 210
NAH A AD +AT ++ ++ +L F + R K
Sbjct: 150 NAHSASADTWATYEVLKSQLDRYDELENDMKFLGDFSTRKKQA 192
>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
bacterium SS3/4]
Length = 1376
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 77/231 (33%), Gaps = 57/231 (24%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
+V++D ET G ++ + V+V R E I+ + F + +P P + +TGI
Sbjct: 415 YVVFDIETTGFSPIKNKIIEIGAVKV-RNGEIIDRMDEFV----NPEVPIPFDIERLTGI 469
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-----YNNIRFDDYYSRN--IFYRNFYD 116
+ A+ ++ F +G +N FD + + +D
Sbjct: 470 NDAMVMG-----ADTVDKVLPRFLE----FVGDAALVAHNASFDVSFISHNAGLLGLSFD 520
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+LD + A P+ FKL +A A G+ N H
Sbjct: 521 PT------------VLDTVTLARALLPNL----------NRFKLDTVAKALGVSLENHHR 558
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
A D AT + F + K + ++ + HVS
Sbjct: 559 AVDDAEATAGI-----------FLKFVEMLKKQH--DMTNLDQLEEFSHVS 596
>gi|227889381|ref|ZP_04007186.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
ATCC 33200]
gi|227850183|gb|EEJ60269.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus johnsonii
ATCC 33200]
Length = 320
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 90/268 (33%), Gaps = 45/268 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+++ + D ET G DR + G+RV E + + P + +P A
Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLRVRHG-EVVATFSELVKFPDSNKVP---AFITK 85
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GI G+ E ++ ++ F + I+GYN + FD F + + Y
Sbjct: 86 LNGIDEATIEEKGLPVQEAIKK-YREFIGSDP-IVGYN-VNFD-----LNFVYDLAEKYH 137
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N N D+ + R+ Y P +L D I H
Sbjct: 138 LTVLN-NDYVDVYRLARSFY---------PQEQHN----RLLDCMHRLDIAETQEHRGLD 183
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
D T + ++ +LF + R + ++ L +V S F +
Sbjct: 184 DCLDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRS------- 232
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQD 267
P A K+ VI +L D +
Sbjct: 233 --PFAH----KNVVIAGDLDVDDYELAN 254
>gi|307720332|ref|YP_003891472.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
autotrophica DSM 16294]
gi|306978425|gb|ADN08460.1| Exonuclease RNase T and DNA polymerase III [Sulfurimonas
autotrophica DSM 16294]
Length = 247
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 50/247 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +VI D ET G + DR Q + ++I FC + D A+ +
Sbjct: 1 MAKQYVILDTETTGTN-EEDRVIQLGYMV--LGAKEI-EVHNEFC--STDVAIKFGAMEV 54
Query: 61 TGITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GITP E +R+ + + N II +N FD ++
Sbjct: 55 HGITPDLLEGKPPCVETVAYKRLLELNTSENYLII--HNAPFDITMLEKEGFK------- 105
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDG-----------IQWPSRDDGATSFKLQDLALANG 168
++ ++D +R PD ++ + + A A G
Sbjct: 106 -------TQMKVIDTLRVAKHVMPDEEAHRLQYFRYKMELYKDE--------EKEAKALG 150
Query: 169 IEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
I V AHDA DV ++ L K + + + N+N + K++D+ N TP++ +
Sbjct: 151 IV-VKAHDAIGDV----LVLKLFLSKLKDIVQAQFP--NENPVEKMVDLTN-TPILVKTF 202
Query: 229 MFGASRS 235
FG +
Sbjct: 203 RFGKHKG 209
>gi|304388401|ref|ZP_07370510.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
gi|304337613|gb|EFM03773.1| oligoribonuclease [Neisseria meningitidis ATCC 13091]
Length = 187
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|149372305|ref|ZP_01891493.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
SCB49]
gi|149354695|gb|EDM43258.1| DNA polymerase III, epsilon subunit [unidentified eubacterium
SCB49]
Length = 460
Score = 51.3 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 37/225 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITG 62
++ I D ET G + + A R D + + ++ FC + P P V +TG
Sbjct: 2 NYAILDIETTGGKYNEEGITEIAIYRFDGE-KVVDQ----FCSLVNPERPIQPFVVNLTG 56
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I L++ E ++RI + CI+ +N +FD+ F R YD
Sbjct: 57 IN-SDMLKNAPKFYEVAKRIVEITKD---CILVAHNAQFDNRILTTEFDRLGYD------ 106
Query: 123 DNGNSRWDLLDV--MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+DL + + PD S+ L L + GI + H A+ D
Sbjct: 107 ------FDLETLCTVELSKKLIPD----------MPSYSLGKLVRSLGIPITDRHRAQGD 150
Query: 181 VYATLALVW--LIREKKPKLFEYLYDYRNKNQL-RKLIDIQNMTP 222
AT+ L L+++ + ++ + K Q+ KL+D+ P
Sbjct: 151 AKATVTLFKMLLLKDTEKEIIKAAVKKDPKRQIDTKLLDLIKQAP 195
>gi|330718588|ref|ZP_08313188.1| Rad3-related DNA helicase [Leuconostoc fallax KCTC 3537]
Length = 798
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/193 (21%), Positives = 64/193 (33%), Gaps = 40/193 (20%)
Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQW----EKIESTEVFFCKPADDYLPDPE 56
+ FV+ D ET G+ V R Q + + ++ E F L D +
Sbjct: 8 NDSFVVVDLETTGQSVDRGGRIIQIG-----MTFIKKRKIVDHFETF---VNPGQLIDRQ 59
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+T I+ + E E + IH + II +N + FD Y F R
Sbjct: 60 IQQLTHISQNEVQHAPYFE-EIAPVIHTLLKD--SVIIAHN-VNFDYPYLNEEFERAGLS 115
Query: 117 SYRWSWDNGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
D+ +D + P ++L DL I+ NA
Sbjct: 116 PL-----------DIPAIDTVMLSQILLPTA----------PGYRLVDLTQYLDIKLSNA 154
Query: 175 HDAKADVYATLAL 187
H A D +AT L
Sbjct: 155 HRANEDAHATAEL 167
>gi|183985996|gb|AAI66309.1| LOC100158598 protein [Xenopus (Silurana) tropicalis]
Length = 273
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 28/149 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D + A + D + + K D L D
Sbjct: 71 MGQRMVWVDLEMTGLDIEKDHIIEMACLITDSDLDILAEGPNLIIK-QPDELLDGMSDWC 129
Query: 55 ---------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
+AV + IT Q+A E EF I Q + P C + N++ D +
Sbjct: 130 KEHHGKSGLTQAVRESKITLQQA------EYEFLSFIRQH-TPPGVCPLAGNSVHADKKF 182
Query: 106 SRNI---FYRNFYDSYR--WSWDNGNSRW 129
F R+ + + RW
Sbjct: 183 LDKYMPQFMRHLHYRIIDVSTVKELCRRW 211
>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
kimchii IMSNU 11154]
gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
kimchii IMSNU 11154]
Length = 1437
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/197 (22%), Positives = 66/197 (33%), Gaps = 38/197 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V +D ET G D+ + + V+ Q IE + + P + F T +
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVK--MQLGNVIEKFSEY---INPGF---PLSDFTTKL 470
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T V A+ I F + +IG+N + FD + +Y
Sbjct: 471 T--SITDTMVAHADTEENIITRFRKWIGDAVLIGHN-VTFDIGF--------MNAAYARY 519
Query: 122 WDN--GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N D L R +Y PD S++L LA I AH A
Sbjct: 520 NQTVIKNPVIDTLPFTRWLY---PD----------YKSYRLGTLAKRFNINLEQAHRAIF 566
Query: 180 DVYATLALV-WLIREKK 195
D T + LI+E
Sbjct: 567 DAETTGHIAWRLIKEVN 583
>gi|227503895|ref|ZP_03933944.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
6940]
gi|227199518|gb|EEI79566.1| DNA polymerase III subunit epsilon [Corynebacterium striatum ATCC
6940]
Length = 223
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 35/197 (17%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
+D ET + R A VR+D ++ E+ AD + PEA I GIT +
Sbjct: 11 FDLETTSVNPKEARIVTSALVRIDG--RDVDKREM----LADPGVEIPEAAAKIHGITTE 64
Query: 67 KALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
KA +G A+ R I Q + T I+ YN +D R +
Sbjct: 65 KARAEGQPHDEVLAQTVRSIRQAWDDGLTLIV-YNA-AYDLSVLRAL------------- 109
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
G+ D + + +W G + L D++ G+ NAH+A +D
Sbjct: 110 -TGDFTVD--GPVFDPFVIDRVKDKW---RKGKRT--LGDVSAHYGVTLENAHEATSDAL 161
Query: 183 ATLALVWL-IREKKPKL 198
A + W+ +R+ P+L
Sbjct: 162 AAARIAWMQVRQHFPEL 178
>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
Length = 1433
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D E ++ + +T + +N FD + F + D
Sbjct: 472 IT-DDMLTDAPEVGEVFKKFEAWMGD-HTLVA--HNASFDMGFLNVGFKKCGLD------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KPKNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|161869352|ref|YP_001598519.1| oligoribonuclease [Neisseria meningitidis 053442]
gi|161594905|gb|ABX72565.1| oligoribonuclease [Neisseria meningitidis 053442]
gi|325135642|gb|EGC58259.1| oligoribonuclease [Neisseria meningitidis M0579]
Length = 187
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|329295775|ref|ZP_08253111.1| Orn [Plautia stali symbiont]
Length = 182
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 7 NNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAE 43
>gi|294669159|ref|ZP_06734240.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291308903|gb|EFE50146.1| oligoribonuclease [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 185
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 38/206 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
++ D E G D +R + A + D + +EV+ +D+ L +A
Sbjct: 5 ASNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDAWNTA 64
Query: 61 ----TGITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYR 112
TG+T Q+ + EAE +++ F + +T + G N+I D F
Sbjct: 65 THGRTGLT-QRVRESQLTEAEVEQKLLDFIAQWIPEKSTPMCG-NSIHQD-----RRFMV 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + N D+ + K A+A G+
Sbjct: 118 KYMPRLEAYFHYRN--LDVSTLKELA--------------------KRWHPAVAKGVVKR 155
Query: 173 NAHDAKADVYATLALVWLIREKKPKL 198
+H A D+ ++ + RE KL
Sbjct: 156 GSHQALDDILESIEEMRYYRENFLKL 181
>gi|313637226|gb|EFS02740.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
seeligeri FSL S4-171]
Length = 921
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 60/179 (33%), Gaps = 32/179 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--ITGITP 65
D ET G + DR QFA + + + + P P A +TGI+P
Sbjct: 3 DLETTGNQASREDRIIQFAAC-----FVESGKRLETYATFLNPEKPIP-AFIQELTGISP 56
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ + E + + I T + +N + FD + R
Sbjct: 57 KDVKDAPLFE-DVAPIIAGLLED--TIFVAHN-VSFDWTFLEREMTRAGISL-------- 104
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+ LD + P G S+KLQDL+ G+ H H A +D T
Sbjct: 105 -GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHQADSDAEVT 152
>gi|110637752|ref|YP_677959.1| DNA polymerase III subunit epsilon [Cytophaga hutchinsonii ATCC
33406]
gi|110280433|gb|ABG58619.1| DNA polymerase III epsilon subunit [Cytophaga hutchinsonii ATCC
33406]
Length = 283
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 7 IYDYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+D ET G +++ DR + VRV D + ++++ V P D ++ I GI
Sbjct: 24 FFDLETTGVNISTDRIIEICIVRVSPPDEKV-EVKTFRVNPGMPIPD-----QSSAIHGI 77
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCII-GYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
K + D E + +I+QF C + G+N+IRFD F+R +
Sbjct: 78 Y-DKDVADKPTFTEIAHQINQFMKD---CDLGGFNSIRFDIPLLIEEFFRAGIEFDITKR 133
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGI----QWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
L+D R + P + ++ D L+ NAH A+
Sbjct: 134 K-------LVDSQRIFHLMEPRTLGAAYKFYCNKD------LE-----------NAHSAE 169
Query: 179 ADVYATLALVW 189
AD AT ++
Sbjct: 170 ADTLATYYILK 180
>gi|313669085|ref|YP_004049369.1| oligoribonuclease [Neisseria lactamica ST-640]
gi|313006547|emb|CBN88011.1| putative oligoribonuclease [Neisseria lactamica 020-06]
Length = 187
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
Length = 1426
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 70/222 (31%), Gaps = 49/222 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++ FV++D ET G D+ + V++ R +E ++ P D +
Sbjct: 408 LSQEFVVFDLETTGFSNINDKITEIGAVKI-RDFEIVDRFSEL-VNPEKDI--SYRVQEL 463
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-----YNNIRFDDYYSRNIFYRNFY 115
TGIT + +E I F +G +N FD +
Sbjct: 464 TGITNEMVKDKPTIE-----EILPKFME----FVGDDVLVAHNADFDTGFIMQKCKEQGL 514
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ N +D + P+ +KL +A G++ +N H
Sbjct: 515 -----EYKNKK-----VDTLMLARIMLPNL----------KRYKLDKVAKEVGVQLLNHH 554
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
A D AT + F K + KL D+
Sbjct: 555 RAVDDAEATANI-----------FIKFLGMLKKQGVEKLSDV 585
>gi|298346657|ref|YP_003719344.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
gi|298236718|gb|ADI67850.1| DNA polymerase III subunit epsilon [Mobiluncus curtisii ATCC 43063]
Length = 240
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 21/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G + DR A + +R + + P A + G+T +
Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73
Query: 68 ALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+GV E I ++G+N + FD R+ + R +
Sbjct: 74 LQANGVDPRVGLEEVAGIVAETMRRGVPVVGFN-VTFDFAILEAELARHNLPTLRQRLEG 132
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYA 183
++D + G + L + A + + H+A+ADV A
Sbjct: 133 TVGP--IVDPLVLDRILD-------RYRKGKRN--LASVCTAYDLPLREDFHNAQADVSA 181
Query: 184 TLALVWLIREKKPKL 198
TL L+ + E+ P+L
Sbjct: 182 TLDLLGAMSERFPEL 196
>gi|319441121|ref|ZP_07990277.1| DNA polymerase III subunit epsilon [Corynebacterium variabile DSM
44702]
Length = 228
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPE- 56
+H + +D ET G D R A + ++ E + +P PE
Sbjct: 9 PSHMLSFDLETTGPDPLTARIVTSALITINGSHRDDLEILADPG----------IPIPEG 58
Query: 57 AVFITGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
A + GIT + A G AE RI + +S T II N +D R
Sbjct: 59 ATAVHGITTEYAREHGRPHDEVLAETIERIRRGWSEGATLII--YNAAYDLTVLR 111
>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 1438
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 27/181 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + + V++ + I+ E F + + +T I
Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G E ++ + F + ++G+N + FD + + R+
Sbjct: 474 T--DEMVHGSKSEEEVFKLFRDFC-EDAIVVGHN-VTFDIGFMNTGYVRHGMPEI----K 525
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P+ ++L LA + + H A D
Sbjct: 526 NP-----IIDTLTLARFLYPN----------MRGYRLNTLAKKFDVNLEHHHRAIYDAET 570
Query: 184 T 184
T
Sbjct: 571 T 571
>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
Length = 1438
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 27/181 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + + V++ + I+ E F + + +T I
Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G E ++ + F + ++G+N + FD + + R+
Sbjct: 474 T--DEMVHGSKSEEEVFKLFRDFC-EDAIVVGHN-VTFDIGFMNTGYVRHGMPEI----K 525
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P+ ++L LA + + H A D
Sbjct: 526 NP-----IIDTLTLARFLYPN----------MRGYRLNTLAKKFDVNLEHHHRAIYDAET 570
Query: 184 T 184
T
Sbjct: 571 T 571
>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
Length = 1438
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 27/181 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + + V++ + I+ E F + + +T I
Sbjct: 418 TYVVFDTETTGLSAIYDRVIELSAVKM-KNSNVIDQFEEF---IDPGFHLSEQTTNLTSI 473
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G E ++ + F + ++G+N + FD + + R+
Sbjct: 474 T--DEMVHGSKSEEEVFKLFRDFC-EDAIVVGHN-VTFDIGFMNTGYVRHGMPEI----K 525
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P+ ++L LA + + H A D
Sbjct: 526 NP-----IIDTLTLARFLYPN----------MRGYRLNTLAKKFDVNLEHHHRAIYDAET 570
Query: 184 T 184
T
Sbjct: 571 T 571
>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
pentosaceus ATCC 25745]
Length = 1437
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 70/187 (37%), Gaps = 27/187 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D+ + + V+++ I+ E F + + +T IT
Sbjct: 420 YVIFDVETTGLSAIYDKVIELSAVKMENG-NVIDQFEEF---IDPGFPLSETTINLTSIT 475
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +R + E E + +F+ I+G+N + FD + + R+ + N
Sbjct: 476 -DEMVRGSMSEKEVFTKFREFYED--AIIVGHN-VTFDIGFMNTGYLRHGMEEI----KN 527
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P ++L LA G+ + H A D T
Sbjct: 528 P-----IIDTLTLARFLYPTL----------KGYRLNTLAKKFGVALEHHHRAIYDSETT 572
Query: 185 LALVWLI 191
L +L
Sbjct: 573 GHLCYLF 579
>gi|268320049|ref|YP_003293705.1| hypothetical protein FI9785_1583 [Lactobacillus johnsonii FI9785]
gi|262398424|emb|CAX67438.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
johnsonii FI9785]
Length = 320
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/268 (19%), Positives = 90/268 (33%), Gaps = 45/268 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+++ + D ET G DR + G+RV E + + P + +P A
Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLRVRHG-EVVATFSELVKFPDSNKVP---AFITK 85
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GI G+ E ++ ++ F + I+GYN + FD F + + Y
Sbjct: 86 LNGIDEATIEEKGLPVQEAIKK-YREFIGSDP-IVGYN-VNFD-----LNFVYDLAEKYH 137
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N N D+ + R+ Y P +L D I H
Sbjct: 138 LTVLN-NDYVDVYRLARSFY---------PQEQHN----RLLDCMHRLDIAETQEHRGLD 183
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
D T + ++ +LF + R + ++ L +V S F +
Sbjct: 184 DCLDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRS------- 232
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQD 267
P A K+ VI +L D +
Sbjct: 233 --PFAH----KNVVITGDLDVDDYELAN 254
>gi|315655203|ref|ZP_07908104.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315490458|gb|EFU80082.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 240
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 21/195 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G + DR A + +R + + P A + G+T +
Sbjct: 19 FDTETTGVFTSRDRIATVSLIR-----RINGTDSPRYWIINPGVPMPPAAGRVNGLTDEY 73
Query: 68 ALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+GV E I ++G+N + FD R+
Sbjct: 74 LQANGVDPRVGLEEVAVIIAETMRRGVPVVGFN-VTFDFAILEAELARHDL-PTLRQRLE 131
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYA 183
G S ++D + G + L + A + + H+A+ADV A
Sbjct: 132 G-SVEPIVDPLVLDRILD-------RYRKGKRN--LASVCTAYDLPLREDFHNAQADVSA 181
Query: 184 TLALVWLIREKKPKL 198
TL L+ + E+ P+L
Sbjct: 182 TLDLLGAMSERFPEL 196
>gi|221640011|ref|YP_002526273.1| DNA polymerase III subunit epsilon [Rhodobacter sphaeroides KD131]
gi|221160792|gb|ACM01772.1| DNA polymerase III, epsilon subunit precursor [Rhodobacter
sphaeroides KD131]
Length = 695
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G + D Q A VR+ EV P + + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRSIPPSSTEVHGI 552
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + E RR H+F ++ +N FD + R +D
Sbjct: 553 T-DAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNA-PFDMEFLRRA-----EPLIGRRFD 603
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
N +LD + S L L GI H A D
Sbjct: 604 NP-----ILDTVLLSAVLFGQS--------DVHS--LDALTHRLGITIPEEARHTAIGDT 648
Query: 182 YATL-ALVWLIREKKPKLFEYL 202
AT A + L+ + + FE
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670
>gi|89901349|ref|YP_523820.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
gi|89346086|gb|ABD70289.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
Length = 476
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 33/193 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVF 59
M +V+ D ET G + DR + A VR++ + P
Sbjct: 1 MLPCYVLLDLETTGGNPVHDRITEIAAVRIEN-----GQEVARWSTLVNPGCSISPFIQH 55
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI+ A+ G E + ++ + ++ +N+RFD + N R
Sbjct: 56 LTGIS--NAMVRGAPGFETVAQ--HLLALLDGAVLVAHNVRFDHGFLLNELAR------- 104
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D+ ++ + + +P L + +GI + H A
Sbjct: 105 ---------LDVALRVKTLCTVRLSRLLYPQHKGHG----LDAIMQRHGIRTLERHRAMG 151
Query: 180 DV---YATLALVW 189
DV A L +
Sbjct: 152 DVEVMQAWLQIAR 164
>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 1444
Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 ADNAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|311108015|ref|YP_003980868.1| exonuclease family protein [Achromobacter xylosoxidans A8]
gi|310762704|gb|ADP18153.1| exonuclease family protein [Achromobacter xylosoxidans A8]
Length = 207
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 64/190 (33%), Gaps = 41/190 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK---PADDYLPDPEAVFIT 61
F++ D ET G A +FA VRV +E + P ++ +T
Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRVGEA-GALEREYTQVVRTRGPVPSFIS-----RLT 92
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + RDGV + F + ++N FD + + +
Sbjct: 93 GITQAEVDRDGVPVVQAFSSFLDFVEDLP---VFFHNASFDRRFLGAAADQTGL-PFA-- 146
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA----HDA 177
NS A WP S KL+ LA HV A H A
Sbjct: 147 ----NSTH-----CTLALARR----AWPE----LPSHKLEILA-----RHVGASDPTHRA 184
Query: 178 KADVYATLAL 187
ADV T+A+
Sbjct: 185 LADVRTTVAV 194
>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
Length = 1444
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 79/231 (34%), Gaps = 41/231 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+V++D ET G + + A V+V + E I+ + F P P +V
Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRF-MLFANPG-----HPLSVTTME 479
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT + ++D E R F + +N FD + R
Sbjct: 480 LTGIT-DEMVKDAPKPDEVLAR---FVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIA 535
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N ++D + PD + +L L IE H A
Sbjct: 536 ----NP-----VIDTLELARFLYPDL----------KNHRLNTLCKKFDIELTQHHRAIY 576
Query: 180 DVYATLA-LVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
D AT L+ L++E + + LF + R ++ + P HV+
Sbjct: 577 DAEATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRL----ARPF-HVT 622
>gi|288928331|ref|ZP_06422178.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
gi|288331165|gb|EFC69749.1| exonuclease [Prevotella sp. oral taxon 317 str. F0108]
Length = 284
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVF 59
+T V++D ET G D+ DR Q + +++ ++ + + +P D + +
Sbjct: 5 LTRPLVVFDLETTGLDLVNDRIIQISYIKIYPDGKEERENLLVYPQRPIPDEVSE----- 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT E E + R+++ F G+N+ FD F R D
Sbjct: 60 LTGITTDLVEDAPTFE-ELAPRLNEVF--KGCDFAGFNSNHFDIPMLAEEFLRAEID 113
>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
700970]
gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
urealyticum
gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
parvum serovar 3 str. ATCC 27815]
Length = 1442
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/201 (18%), Positives = 72/201 (35%), Gaps = 31/201 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+VI+D ET G D +F V + ++I FF KP + +T
Sbjct: 406 NATYVIFDIETTGLFPNFDEIIEFGAVIMQNN-KQIGEKIQFFIKPIQQI--NENVTNLT 462
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ Q+ + + + E +I + F ++ +N I FD + + +
Sbjct: 463 NIS-QEMVNNAIDEKTALLKIKEIFDD--HILVAHNGINFDINFINQRLLKWGLEPL--- 516
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDAKA 179
N + +D + A +P S +L + +++ +AH A
Sbjct: 517 -KNPS-----IDTLMISRAINP-----------FKSHRLGAICKKYEVDYNDESAHRADY 559
Query: 180 DVYATLALVWLIREKKPKLFE 200
D + L + + K LF
Sbjct: 560 DA---IVLADVFKVMKNNLFN 577
>gi|269125769|ref|YP_003299139.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268310727|gb|ACY97101.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 328
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 30/182 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G R A + + +E DP V I G+TP++
Sbjct: 20 DVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTL---LDPGC--DPGPVHIHGLTPERL 74
Query: 69 LRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G + + R+ + S ++ +N FD + + F R
Sbjct: 75 --RGAPTFDRVAERVAELLS--GRVMVAHNA-AFDYAFLAHEFGRAGL------------ 117
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
+ + + G+ P +L LA G+ AHDA D +
Sbjct: 118 HLPVEQRLCTLALGRRIGLPTPD-------LRLSTLAAHYGVPQHRAHDALDDARVLAGV 170
Query: 188 VW 189
+
Sbjct: 171 LR 172
>gi|238853316|ref|ZP_04643700.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
gi|300362992|ref|ZP_07059162.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
JV-V03]
gi|238834110|gb|EEQ26363.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 202-4]
gi|300353042|gb|EFJ68920.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
JV-V03]
Length = 320
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 33/223 (14%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
++ + D ET G DR + G++V E + + P ++ +P A
Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRHG-EVVATFSELVKFPDNNKVP---AFITK 85
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GI G+ E ++ ++ F + I+GYN + FD F + + Y
Sbjct: 86 LNGIDEAAIEEKGLPVQEAIKK-YREFIGSDP-IVGYN-VNFD-----LNFVYDLAEKYH 137
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N N D+ + R+ Y P L + N I H
Sbjct: 138 LTVLN-NDYVDVYRLARSFY---------PQERHNR---LLDCMHRMN-IAENQEHRGLD 183
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
D T + ++ KLF+ + R + ++ L D+ + P
Sbjct: 184 DCLDT----KKVFDEFHKLFKQEHMLRAQEAVKTL-DLTSEWP 221
>gi|212710150|ref|ZP_03318278.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens
DSM 30120]
gi|212687149|gb|EEB46677.1| hypothetical protein PROVALCAL_01204 [Providencia alcalifaciens
DSM 30120]
Length = 180
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPIRDRIIEIATIVTDSNLNILAE 42
>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
Length = 1479
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/226 (19%), Positives = 79/226 (34%), Gaps = 50/226 (22%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------ 59
V +D ET G LD +F + + ++ E ++ D L P++
Sbjct: 433 VFFDLETTGLSPELDEIIEFGAI--EYNFKTGERKKI-------DILIKPKSKLKDFTKK 483
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T I + +E F + I+Q I+ +N FD F ++ +
Sbjct: 484 LTNINEEMLENKPGIEVAF-KEINQVIKD---AILVAHNANFD-----YTFLSHWSEKLG 534
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDA 177
+ N+ D L + R IY P+ S +L LA I + AH
Sbjct: 535 Y-GKLENTIIDTLTISRIIY---PEL----------KSHRLGSLAKRVNISYDPSIAHRG 580
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
D ++ + ++ + D R K ++ D + PL
Sbjct: 581 DYD-------ADILADIYERMLD---DTRKKTKITIDSDWDKINPL 616
>gi|42519676|ref|NP_965606.1| hypothetical protein LJ0649 [Lactobacillus johnsonii NCC 533]
gi|41583965|gb|AAS09572.1| hypothetical protein LJ_0649 [Lactobacillus johnsonii NCC 533]
Length = 320
Score = 51.0 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 53/268 (19%), Positives = 91/268 (33%), Gaps = 45/268 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+++ + D ET G DR + G++V E + + P + +P A
Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLKVRHG-EVVATFSELVKFPDSNKVP---AFITK 85
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GI G+ E ++ ++ F + I+GYN + FD F + + Y
Sbjct: 86 LNGIDETTIEEKGLPVQEAIKK-YREFIGSDP-IVGYN-VNFD-----LNFVYDLAEKYH 137
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N N D+ + R+ Y P +L D I H
Sbjct: 138 LTVLN-NDYVDVYRLARSFY---------PQEQHN----RLLDCMHRLDIAETQEHRGLD 183
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
D T + ++ KLF+ + R + ++ L LV S F +
Sbjct: 184 DCLDT----KKVFDEFHKLFKQEHMLRAQEMVKTLDLTSEWPELVKQSQAFRS------- 232
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQD 267
P A K+ VI +L D +
Sbjct: 233 --PFAH----KNVVIAGDLDVDEYELAN 254
>gi|269213888|ref|ZP_05983052.2| oligoribonuclease [Neisseria cinerea ATCC 14685]
gi|269145276|gb|EEZ71694.1| oligoribonuclease [Neisseria cinerea ATCC 14685]
Length = 188
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 6 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 65
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 66 HGRTGLTQRVRESSYTEAEVEQKLLDFMSEW 96
>gi|144897909|emb|CAM74773.1| DNA polymerase III, epsilon subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 677
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/236 (18%), Positives = 75/236 (31%), Gaps = 61/236 (25%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVR-------VDRQWEKIESTEVFFCKPADDYLPDP 55
F+++D ET G + D+ Q VR + +I + P
Sbjct: 483 TFIVFDTETTGLQPSQGDQIVQIGAVRIVNGRILSGESFNRI---------VNPGRVIPP 533
Query: 56 EAVFITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR---NI 109
E++ GIT GVV +F + F+ + +N FD + R
Sbjct: 534 ESIKFHGITDDMVKDKPPLGVVLPQF-----KAFAADAVLVA--HNAAFDLKFLRMNERQ 586
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F F + L +M + Y P+ S L + GI
Sbjct: 587 FGLKFDNPV------------LDTMMLSNYLDGPET---------GHS--LDAICDRLGI 623
Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
+ H A D T A+ L+ + + R L +++ +M +H
Sbjct: 624 SITDRHTALGDAIVTAAV--LLNQID------ALESRGITTLEQVVKELDMNMALH 671
>gi|86133336|ref|ZP_01051918.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
gi|85820199|gb|EAQ41346.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
Length = 359
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 38/220 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITG 62
+ I D ET G + + A + D Q E ++ KP +++ V +TG
Sbjct: 2 YAILDIETTGGKFNEEGITEIAIYKYDGQ-EIVDQFISLINPEKPIQEFV-----VRLTG 55
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I K L++ E ++RI + N I+ +N+ FD R F R +D + +
Sbjct: 56 IN-NKMLKNAPKFYEVAKRIVEI--TKNCIIVAHNS-AFDYRILRTEFDRLGFD-FERNT 110
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
L + A D S+ L L + GI + H A D
Sbjct: 111 ---------LCTVELSQALILD----------QPSYSLGKLTKSLGIPISDRHRATGDAL 151
Query: 183 ATLALVWLIREKKPK------LFEYLYDYRNKNQLRKLID 216
AT+ L L+ EK K +Y K +L+ LI+
Sbjct: 152 ATVKLFKLLLEKDHKKTIIQNAIKYFDKRLEKQKLKNLIE 191
>gi|255013952|ref|ZP_05286078.1| hypothetical protein B2_08587 [Bacteroides sp. 2_1_7]
Length = 192
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 38/206 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAG-VRVD------RQWEKIESTEVFFCKPADDYLPDPEA 57
+ +D ET G + Q +G + +D + ++ C+ + EA
Sbjct: 3 LLFFDLETTGIKYWRNGVHQISGEIVIDGVTKESFNFNVCPHSQ---CEIEE------EA 53
Query: 58 VFITGITPQKALRDGVVEAE--------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+ I ++ ++ E S+ + +F ++GYNN FD+++ +
Sbjct: 54 LRICNVSKEQIQAYP-PMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAF 112
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F +N D Y +SW NS D++ V+ + + T FK + +A A GI
Sbjct: 113 FVQNG-DHYFYSWFWVNSI-DVM-VLSTQHLMR--------KRHEMTDFKQETVARALGI 161
Query: 170 EHVNA--HDAKADVYATLALVWLIRE 193
+ +A HDA D+ T + I
Sbjct: 162 QIDSAKLHDASYDIQLTKEIYNRISS 187
>gi|120597485|ref|YP_962059.1| oligoribonuclease [Shewanella sp. W3-18-1]
gi|146294374|ref|YP_001184798.1| oligoribonuclease [Shewanella putrefaciens CN-32]
gi|166216588|sp|A4YAL6|ORN_SHEPC RecName: Full=Oligoribonuclease
gi|166216590|sp|A1RFR0|ORN_SHESW RecName: Full=Oligoribonuclease
gi|120557578|gb|ABM23505.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp.
W3-18-1]
gi|145566064|gb|ABP76999.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
putrefaciens CN-32]
gi|319427729|gb|ADV55803.1| Exonuclease RNase T and DNA polymerase III [Shewanella putrefaciens
200]
Length = 181
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 67/211 (31%), Gaps = 50/211 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N+ + D E G + +DR + A + D++ I V D+ L A
Sbjct: 6 NNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVL----AAMDDW 61
Query: 60 ---ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS-R 107
G + + EA+ + F C N++ D + R
Sbjct: 62 NQKHHGESGLIDRVRASQDNEAQAVAKTIAFLEQYVPKGASPMCG---NSVGQDRRFLNR 118
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+ R D + + D+ V + +SP+ ++
Sbjct: 119 YM--RELEDYFHY------RNLDVSTVKELVKRWSPEIME-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G + N H A D+ ++A + R K K+
Sbjct: 151 GFKKQNTHQALQDIQESIAELQYYRSKVFKI 181
>gi|260773955|ref|ZP_05882870.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
gi|260610916|gb|EEX36120.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
Length = 236
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 27/187 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---STEVFFCKPADDYLPDPEAVFIT 61
FV +D+ET G + D VD ++I+ S E+F C P ++ I
Sbjct: 52 FVAFDFETSGVNARQDHILSLG--WVDMTLDEIDLAASEELFVCHPQ---FITAQSAQIN 106
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR-FDDYYSRNIFYRNFYDSYRW 120
ITP K L G+ E R+ + + G R F + R + R + +
Sbjct: 107 HITP-KILSAGLTLDEAMDRLFIRLAGKVALVHGSCIERAFVE---RYLQQRYGLEQFPC 162
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W +D ++ + G + D SF+L D+ G+ +AH A D
Sbjct: 163 VW---------IDTLQIEKQMTYQG-----QTDIQRSFQLHDVRARYGLPQYSAHSAAMD 208
Query: 181 VYATLAL 187
AT L
Sbjct: 209 ALATAEL 215
>gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
MED217]
gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
MED217]
Length = 1460
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 64/194 (32%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G R Q A D IE + +P +P
Sbjct: 2 YLIFDTETTGLPKNWSAPITDSDNWPRAIQIAWQLHDDMGNCIEHEDYLI-RPDGFDIPF 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A I GI+ + A RDG+ E + T + N+ FD F+R
Sbjct: 61 -DAERIHGISTELAQRDGLPLGEVLGKFKAALER--TKFVVGQNVGFDVNIMGAEFHRLD 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIE 170
+ L V+ + Q P G FKL L +
Sbjct: 118 VTNQLQE----------LPVLDTCTETTAQLCQIPGGRGGK--FKLPTLTELHQYLFNQP 165
Query: 171 HVNAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 166 FAEAHNATADVEAT 179
>gi|306835084|ref|ZP_07468126.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
49726]
gi|304569032|gb|EFM44555.1| epsilon subunit family exonuclease [Corynebacterium accolens ATCC
49726]
Length = 231
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---IT 61
F + D ET G + DR + A VR D + ++S PD +A+ I
Sbjct: 31 FAVIDTETTGVNKRYDRIIELAAVRADAHFNPVDSWHTLLS-------PDGKAIKNSHIH 83
Query: 62 GIT 64
GIT
Sbjct: 84 GIT 86
>gi|149376092|ref|ZP_01893858.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
gi|149359729|gb|EDM48187.1| hypothetical protein MDG893_03900 [Marinobacter algicola DG893]
Length = 483
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 61/185 (32%), Gaps = 28/185 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F D ET G + + DR + G+R R + + + P +T
Sbjct: 10 SATFAFLDIETTGGNPSHDRITEI-GIRFWRAGAVVGEWQTL---VNPETRISPFIESLT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT V E + + + + T + +N RFD + + F R
Sbjct: 66 GITNDMVADAPVFE-DIAEVLEKQLKD--TIFVAHNA-RFDYGFIKAEFRRLGLL----- 116
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+L ++ P G + L +G+E V H A DV
Sbjct: 117 -----FSAKVLCTVKLSRKLYP----------GFRRHNMDALIERHGLEQVQRHRALGDV 161
Query: 182 YATLA 186
A +A
Sbjct: 162 AAMMA 166
>gi|83310642|ref|YP_420906.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
gi|82945483|dbj|BAE50347.1| DNA polymerase III [Magnetospirillum magneticum AMB-1]
Length = 412
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 49/235 (20%), Positives = 81/235 (34%), Gaps = 59/235 (25%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVR-------VDRQWEKIESTEVFFCKPADDYLPDP 55
FV++D ET G + D+ AGVR + +I + +P
Sbjct: 218 TFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPG----RPIP-----A 268
Query: 56 EAVFITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
E++ GIT + GVV +F + ++ +N FD + R
Sbjct: 269 ESIRYHGITDDMVVDKPPAGVVLPQFRSYVAD-------AVLVAHNAAFDLKFLR----- 316
Query: 113 NFYDSYRWSWDNGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
D G R+D+ LD M D S L D+ GIE
Sbjct: 317 ------MREKDMG-IRFDIPVLDTMILSNFLD--------GPDAGHS--LDDICDRYGIE 359
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
+ H A D T A+ L+R+ + + R L + + ++ ++H
Sbjct: 360 ITDRHTALGDAMVTAAV--LLRQIE------ALEGRGIQTLDQAVKTLDIAMILH 406
>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. HGF2]
gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. HGF2]
Length = 1448
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ ++D ET G D +F G + DR + F KP +TG
Sbjct: 397 TYCVFDLETTGLSSRFDHIIEFGGQIVKDRA---CIKSLQLFIKPP--VALSAFTTELTG 451
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ +++ F+ I + I+ +N FD + + R
Sbjct: 452 IT-EEHMKNAKS---FADSIDEILDFIGDSILVAHNATFDYNFLNDELARIGRPPIM--- 504
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKAD 180
N D LD+ R++ A ++L +A + GI + AH A D
Sbjct: 505 ---NPVIDTLDLARSMQADRKG-------------YRLGQIARSYGIRYDEDVAHRADYD 548
Query: 181 VY 182
Sbjct: 549 AE 550
>gi|300721471|ref|YP_003710746.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
gi|297627963|emb|CBJ88512.1| oligoribonuclease [Xenorhabdus nematophila ATCC 19061]
Length = 181
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D + +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATIVTDSELNILAE 42
>gi|325204819|gb|ADZ00273.1| oligoribonuclease [Neisseria meningitidis M01-240355]
Length = 187
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
innocua FSL S4-378]
Length = 1444
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKQFREWSGDDILVA--HNASFD-----MGFINTAYEKVGLEKA 533
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 534 K-NAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|53728767|ref|ZP_00135217.2| COG1949: Oligoribonuclease (3'->5' exoribonuclease)
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208604|ref|YP_001053829.1| oligoribonuclease [Actinobacillus pleuropneumoniae L20]
gi|165976560|ref|YP_001652153.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|190150461|ref|YP_001968986.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|303250117|ref|ZP_07336319.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|303253291|ref|ZP_07339440.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307246049|ref|ZP_07528131.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307248157|ref|ZP_07530185.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307250390|ref|ZP_07532338.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|307252772|ref|ZP_07534663.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307255031|ref|ZP_07536849.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307257187|ref|ZP_07538959.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
gi|307259467|ref|ZP_07541192.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
gi|307261616|ref|ZP_07543284.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
gi|307263805|ref|ZP_07545411.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13
str. N273]
gi|166215747|sp|A3N1D8|ORN_ACTP2 RecName: Full=Oligoribonuclease
gi|126097396|gb|ABN74224.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
gi|165876661|gb|ABY69709.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|189915592|gb|ACE61844.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|302647973|gb|EFL78180.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302651180|gb|EFL81334.1| oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306852984|gb|EFM85207.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306855334|gb|EFM87509.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306857600|gb|EFM89708.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306859804|gb|EFM91826.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306861904|gb|EFM93880.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306864349|gb|EFM96260.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
gi|306866403|gb|EFM98266.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
gi|306868739|gb|EFN00548.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
gi|306870926|gb|EFN02664.1| Oligoribonuclease [Actinobacillus pleuropneumoniae serovar 13
str. N273]
Length = 184
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V ++D L
Sbjct: 6 NQNLIWIDLEMTGLDPEKERIIEVATIVTDKDLNILAEGPVLTVHQSNDLL 56
>gi|297562082|ref|YP_003681056.1| DNA polymerase III subunit epsilon [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296846530|gb|ADH68550.1| DNA polymerase III, epsilon subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 595
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 26/188 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FI 60
FV+ D ET G + R + VRV E + P P + +
Sbjct: 23 AASFVVLDLETTGTSASGSRITEVGAVRVRGG-EVVGEFATL---VNPGT-PIPANITLL 77
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT Q + E R+ F + P+T ++ +N FD + + R+ D
Sbjct: 78 TGIT-QSMVASAPPMEEVLPRLLAFLDAEPDTVLVAHNA-PFDTGFLKAACERHGTD--- 132
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W + ++D +R A + +L LA G+ H A
Sbjct: 133 --WPG----YPVVDTLRLARAV--------LARGETRNHRLATLAAYFGVPVAPNHRALE 178
Query: 180 DVYATLAL 187
D AT+ +
Sbjct: 179 DARATVGV 186
>gi|169831719|ref|YP_001717701.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
MP104C]
gi|169638563|gb|ACA60069.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
MP104C]
Length = 236
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 61/190 (32%), Gaps = 52/190 (27%)
Query: 9 DYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY---LPDPE------AV 58
D ET G A D A VR V K +DY L DPE A
Sbjct: 53 DTETTGLRPDAGDEVISVACVR------------VVSAKIQNDYFYTLVDPEREVPELAA 100
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR----NF 114
ITGIT ++ V+E R + + I G+N I+FD + N R
Sbjct: 101 TITGITTERVQGQPVLEKVLPRMLREM---AGGVITGFN-IQFDLVFLNNGLKRKCGTTL 156
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+LDV+ P +F L +A I +
Sbjct: 157 NPPM------------VLDVLSLCRILKPRA----------RTFGLGAMAREYQISVKDR 194
Query: 175 HDAKADVYAT 184
H+A D T
Sbjct: 195 HNALGDALIT 204
>gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM
15868]
gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM
15868]
gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM]
gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD]
Length = 1550
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 77/232 (33%), Gaps = 62/232 (26%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D + +E DY+
Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVE---------NQDYIIK 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYY 105
PE A I GI+ + A G E I + F T I+ +NI FD
Sbjct: 53 PEGYDIPFNATRIHGISTKMAHEQGRDLVE----ILEEFKEVLKKTKIVAGHNIEFDYNI 108
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAF---SPDGIQWPSRDDGATSFKLQD 162
FYR ++ D + + + P KL++
Sbjct: 109 VGAEFYRKSIENVL----EKIPSADTMALGTDYCQLGGGRNGKYKPP---------KLEE 155
Query: 163 LALAN-GIEHVNAHDAKADVYAT----LALVW---------LIREKKPKLFE 200
L G + AH+A ADV AT ++ I E++ K+++
Sbjct: 156 LYEKLYGEKFDEAHNAAADVNATAQVFFEMMRVGIIPAETLKISEEQLKVYQ 207
>gi|88800702|ref|ZP_01116261.1| oligoribonuclease [Reinekea sp. MED297]
gi|88776566|gb|EAR07782.1| oligoribonuclease [Reinekea sp. MED297]
Length = 182
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + D+ + A + D+ +
Sbjct: 5 SNLIWIDLEMTGLNPETDQILEIATIVTDKDLNVLAE 41
>gi|163847184|ref|YP_001635228.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
J-10-fl]
gi|222525025|ref|YP_002569496.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
gi|163668473|gb|ABY34839.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222448904|gb|ACM53170.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
Length = 951
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 67/189 (35%), Gaps = 38/189 (20%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ-K 67
D ET G LD + A V R E ++ E +P +P + +TGI P
Sbjct: 10 DVETTGLQSGLDEIIEVAAV-TFRGHEILDRFEQL-VRPRQ-AVP-LKITRLTGIDPAAL 65
Query: 68 ALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
A E A+ +R I + P I+G+ +I FD R + Y
Sbjct: 66 AQAPRFNEIGADLARFIG---NRP---IVGH-SIGFDLTMLRAQGMQFNQPVY------- 111
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
D P +S+KL LA GI H +AH A D T
Sbjct: 112 -------DTFELATLLLPQV----------SSYKLSALAAHLGIPHPDAHRALNDAEVTA 154
Query: 186 ALVWLIREK 194
L ++ E+
Sbjct: 155 RLFAMLSER 163
>gi|302879370|ref|YP_003847934.1| Exonuclease RNase T and DNA polymerase III [Gallionella
capsiferriformans ES-2]
gi|302582159|gb|ADL56170.1| Exonuclease RNase T and DNA polymerase III [Gallionella
capsiferriformans ES-2]
Length = 181
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 54/213 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
NH V D E G + DR + A V D E I V + P+++
Sbjct: 6 NHLVWIDMEMTGLNPDTDRIIEVAIVVTDSNLETIAEAPVL-------VVHQPDSIMDGM 58
Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYY 105
G + ++ + EA S ++ F C N+I D
Sbjct: 59 DAWNKSTHGKSGLIERVKASTLNEAAVSAQMVAFLKEYVPIRTSPMCG---NSICQD--- 112
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
F + + + N D+ + + PD
Sbjct: 113 --RRFMARWMPEFEEYFHYRN--LDVSTLKELARRWKPDM-------------------- 148
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
A G++ H+A AD+Y ++ + RE KL
Sbjct: 149 AKGVKKHGKHEALADIYESIEELKHYREHFIKL 181
>gi|298369765|ref|ZP_06981082.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
gi|298282322|gb|EFI23810.1| oligoribonuclease [Neisseria sp. oral taxon 014 str. F0314]
Length = 185
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
++ D E G D +R + A + D + +EV+ +D+ L +A
Sbjct: 5 ASNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDAWNTA 64
Query: 61 ----TGITPQKALRDGVVEAEFSRRIHQFFSVP 89
TG+T Q+ + EAE +++ F +
Sbjct: 65 THGRTGLT-QRVRESRLTEAEVEQKLLDFIAQW 96
>gi|254671000|emb|CBA07757.1| oligoribonuclease [Neisseria meningitidis alpha153]
Length = 215
Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 33 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 92
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 93 HGRTGLTQRVRESLHTEAEVEQKLLDFMSEW 123
>gi|332559019|ref|ZP_08413341.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
gi|332276731|gb|EGJ22046.1| putative exonuclease [Rhodobacter sphaeroides WS8N]
Length = 695
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G + D Q A VR+ EV P + + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + E RR H+F ++ +N FD + R +D
Sbjct: 553 T-DAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNA-PFDMEFLRRA-----EPLIGRRFD 603
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
N +LD + S L L GI H A D
Sbjct: 604 NP-----ILDTVLLSAVLFGQS--------DVHS--LDALTHRLGITIPEEARHTAIGDT 648
Query: 182 YATL-ALVWLIREKKPKLFEYL 202
AT A + L+ + + FE
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670
>gi|225025590|ref|ZP_03714782.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
23834]
gi|224941628|gb|EEG22837.1| hypothetical protein EIKCOROL_02492 [Eikenella corrodens ATCC
23834]
Length = 238
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI--- 60
+ D E G + DR + A V D + +E + +D+ L +A
Sbjct: 53 NLCWLDMEMTGLNPEHDRIIEAAVVITDADLNILAQSESYAIHQSDELLEGMDAWNTSTH 112
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFSVP 89
TG+T Q+ + EAE +R+ F +
Sbjct: 113 ERTGLT-QRVKDSTLSEAEVEQRLLDFIAQW 142
>gi|77464143|ref|YP_353647.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
gi|77388561|gb|ABA79746.1| putative exonuclease [Rhodobacter sphaeroides 2.4.1]
Length = 695
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G + D Q A VR+ EV P + + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + E RR H+F ++ +N FD + R +D
Sbjct: 553 T-DAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNA-PFDMEFLRRA-----EPLIGRRFD 603
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
N +LD + S L L GI H A D
Sbjct: 604 NP-----ILDTVLLSAVLFGQS--------DVHS--LDALTHRLGITIPEEARHTAIGDT 648
Query: 182 YATL-ALVWLIREKKPKLFEYL 202
AT A + L+ + + FE
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670
>gi|126661959|ref|ZP_01732958.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
BAL38]
gi|126625338|gb|EAZ96027.1| putative DNA polymerase III epsilon chain [Flavobacteria bacterium
BAL38]
Length = 256
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 41/196 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVF 59
+T +D ET G DVA DR + + +V + ++ + P +P P+
Sbjct: 5 LTRPICFFDLETTGIDVARDRIVEISIFKVYPNGN--KESKTWLVNPT---IPIPPQTTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GIT +K + + E + ++H + + G+N+ RFD R D
Sbjct: 60 VHGITDEKVANEPTFK-ELATQVHNMIKDSD--LAGFNSDRFDIPLLAEELLRAEVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
D+ + K+++ L+ A G N
Sbjct: 114 -FDMKNRVSVDVQTIFH----------------------KMEERTLSAAYKFYCGQSLEN 150
Query: 174 AHDAKADVYATLALVW 189
AH A+AD AT ++
Sbjct: 151 AHSAEADTMATYEILK 166
>gi|226312093|ref|YP_002771987.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
gi|226095041|dbj|BAH43483.1| probable ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
Length = 967
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 79/226 (34%), Gaps = 48/226 (21%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
N ++ D+ET G D Q V +D + ES P D +P P +T
Sbjct: 2 NRLLVVDFETTGSHPRQGDSIIQIGAVAIDDG-QITESFSTLI-HPGQD-IP-PFITQLT 57
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E +F R + + +N FD + + Y ++
Sbjct: 58 GITNEMVADAPSLEEVFPDFLRLLD------GRAFVAHNA-SFDLQFLQEALLSQGYYAF 110
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+LD + P S++L +LA IEH N H A
Sbjct: 111 D-------GY--VLDTVELSRVLLPM----------QNSYRLGELASELEIEHDNPHQAD 151
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
+D AT +LF +L D K L+ IQ + LV
Sbjct: 152 SDALAT-----------AQLFLHLLDILKK---LPLVTIQRLQMLV 183
>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
urinae ACS-120-V-Col10a]
gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
urinae ACS-120-V-Col10a]
Length = 1437
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 28/195 (14%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+VI+D ET G + + V++ + + F + +T
Sbjct: 418 NATYVIFDVETTGLSAVYNTIIEIGAVKMHKG-NVVGEFSEF---LNPGHHLSSFTTELT 473
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + + E E + F T ++ +N FD + + RN +
Sbjct: 474 GIT-DSMVANARPEPEVMQDFLD-FCQ-GTILVAHNA-SFDVGFIDAAYQRNGLPTI--- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+N ++D + P SF+L L+ + + H A D
Sbjct: 527 -ENP-----VIDTLELARYLYPHL----------KSFRLNTLSKHFNVSLEHHHRAIYDA 570
Query: 182 YATLALVWL-IREKK 195
+T AL W+ ++E K
Sbjct: 571 TSTGALAWIFVKEAK 585
>gi|312195665|ref|YP_004015726.1| DNA polymerase III epsilon subunit [Frankia sp. EuI1c]
gi|311227001|gb|ADP79856.1| DNA polymerase III, epsilon subunit [Frankia sp. EuI1c]
Length = 615
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/197 (20%), Positives = 65/197 (32%), Gaps = 37/197 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D ET G +F V+V E + + + +P P +TGI
Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKVRGG-EVVAEFATL-VRASTG-IP-PLITVLTGI 106
Query: 64 TPQKA-LRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T + E EF + T ++ +N FD + + R Y
Sbjct: 107 TDAMLATAPPLAEVLPAFLEFIQ---------GTVLVAHNA-GFDLSFLKAACERVGYP- 155
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
W+ LD R D + + KL LA H A
Sbjct: 156 --------VPTWEHLDTARLARRI--------VTRDESPNNKLSSLARLFRARTEPCHRA 199
Query: 178 KADVYATLALVWLIREK 194
AD AT+ ++ + E+
Sbjct: 200 LADARATVDVLHGLFER 216
>gi|269218897|ref|ZP_06162751.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269212008|gb|EEZ78348.1| putative DNA polymerase III epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 240
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 29/199 (14%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G D DR + V V E + +P+ A + GIT +
Sbjct: 16 FDTETTGIDPKRDRLVTCSLVAVTE-----EGVSKRYWLADPGVEIPE-RAGAVHGITTE 69
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYN------NIRFDDYYSRNIFYRNFYDSYRW 120
+A +G E + + +G N +D + R+ +
Sbjct: 70 RARAEGRPSKEVLEEVAALLAE----HMGRGHPAVAFNATYDFTLLESELDRHGLPTLA- 124
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKA 179
G ++ V+ G +L+DL G+ + H+A+A
Sbjct: 125 ERLGG----EVFPVVDPYLLDRSAD----RYRKGKR--RLEDLCRHYGVHAEDDFHNAEA 174
Query: 180 DVYATLALVWLIREKKPKL 198
DV ATL L+ I K P+L
Sbjct: 175 DVLATLRLLAAIVRKFPEL 193
>gi|78355675|ref|YP_387124.1| DNA polymerase III subunit epsilon [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78218080|gb|ABB37429.1| DNA polymerase III, epsilon subunit [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 239
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 26/196 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
F + D E G D D VR+ R I + +P + P A I I
Sbjct: 41 FAVTDMEMTGLDPEHDEIVAIGAVRI-RGLSIITGDVFHTYVRPQRS-MARP-ATLIHRI 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TP + + + F +I +++ D + R+
Sbjct: 98 TPAQLQHS----PALAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHL--------- 144
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA---TSFKLQDLALANGIEHVNAHDAKAD 180
G +D MR A+ + +W D S+ L DL+ G+ AHDA D
Sbjct: 145 GGAPATPCVDTMRLAQAWERE--RWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALED 202
Query: 181 VYAT----LALVWLIR 192
T L LV ++
Sbjct: 203 ALQTAYLFLYLVRKLK 218
>gi|308389962|gb|ADO32282.1| putative oligoribonuclease [Neisseria meningitidis alpha710]
Length = 215
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 33 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 92
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 93 HGRTGLTQRVRESLHTEAEVEQKLLDFMSEW 123
>gi|260062630|ref|YP_003195710.1| DNA polymerase III subunit epsilon [Robiginitalea biformata
HTCC2501]
gi|88784197|gb|EAR15367.1| DNA polymerase III, epsilon subunit [Robiginitalea biformata
HTCC2501]
Length = 222
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 28/198 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFITGI 63
FV+ D ET G DR +RV + +++ + F K D +V I GI
Sbjct: 34 FVVLDTETTGFSPQHDRILSIGALRVSQGRIRVKESLERFVKQERFDR----ASVPIHGI 89
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + V E E + F ++G++ I FD + R+
Sbjct: 90 L-RTGSSERVTEREALAELLDFTGQSP--VVGHH-ISFDQAMIQAACQRSGLGPL----- 140
Query: 124 NGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
R L+D + I+ P + L +LA I + H A D Y
Sbjct: 141 ----RNPLIDTGLLYGHTL----IKSPLLIK-KDHYTLDELADKFDISCKDRHTALGDAY 191
Query: 183 AT----LALVWLIREKKP 196
T L ++ L+R K+P
Sbjct: 192 ITAIAFLNILELLRAKRP 209
>gi|281492444|ref|YP_003354424.1| ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
[Lactococcus lactis subsp. lactis KF147]
gi|281376108|gb|ADA65599.1| ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit
[Lactococcus lactis subsp. lactis KF147]
Length = 794
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 54/285 (18%), Positives = 100/285 (35%), Gaps = 51/285 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E + ++ Q V V+ E E F + P +TG++ ++
Sbjct: 11 DLEATDAHSSENKIIQIGIVLVEDG----EIVETFSTEVNPHEPLLPRISELTGLSDKQL 66
Query: 69 LRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E +E + ++ + + + + +N RFD F + N
Sbjct: 67 --KTAPEFSEVAGKVRELLTD--SVFVAHNA-RFDYGLLEKSFLNAGLE------FNEML 115
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYAT 184
R D +D+ R Y +F+ L+ L+ + H + H A +D YAT
Sbjct: 116 RVDTVDLARVFY----------------PTFEKYGLESLSEKLDLAHDHPHAAVSDAYAT 159
Query: 185 LALVWLIREKKPKL----FEYLYDYRN------KNQLRKLIDIQNMTP----LVHV--SG 228
L+ I K KL E L + + K L++ +D + P +VH +
Sbjct: 160 AELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRPAGFKVVHNIATR 219
Query: 229 MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQL 273
F AS S + + ++ + S + + L +L
Sbjct: 220 KFRASVSKKSPLTDLSANFSENISRLDLSSRSKQEKLAHLMETEL 264
>gi|221102082|ref|XP_002161173.1| PREDICTED: similar to Oligoribonuclease, mitochondrial [Hydra
magnipapillata]
Length = 184
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 63/207 (30%), Gaps = 53/207 (25%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP-------ADDYLPD-- 54
V D E G DV D + A + D I ++ +P D
Sbjct: 9 LVWVDLEMTGLDVDKDHIIEMAVLITDSDLNIIAEGPDIIINQPESILQNMGDWCKVQHG 68
Query: 55 ----PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI- 109
+AV ++ +T ++ E E + ++ + + G N + D + +
Sbjct: 69 KSGLTKAVQVSRVTLKEC------EREMICFVSKYTNKEKCLLAG-NTVHVDKEFLKKYM 121
Query: 110 --FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
F + D+ V A+ P L AN
Sbjct: 122 PDFMSLLHYRII----------DVSTVKELCRAWYP-------------------LEYAN 152
Query: 168 GIEHVNAHDAKADVYATLALVWLIREK 194
+ +N+H A AD+ ++ + R
Sbjct: 153 APKKINSHRALADIRESVDELKYYRNA 179
>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
Length = 1367
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 45/223 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
FV+ D+ET G D +D + V++ + + ++ KP+ + + IT
Sbjct: 355 NATFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTLI-KPSREI--SRRSSEIT 410
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E EF + N+ I+ +N FD + R +
Sbjct: 411 GITQEMLENKRSIEEVLPEFLGFLE------NSIIVAHNA-NFDYRFLR--LW--IKKVM 459
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W+ D L A + ++ S+ L + G+ H A
Sbjct: 460 GLDWERP--YIDTL-------ALAKSLLK-------MRSYSLDSVVEKLGLGPFRHHRAL 503
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
D T ++F + K + KL +I+N+
Sbjct: 504 DDARVT-----------AQVFLRFVEMMKKIGITKLSEIENLK 535
>gi|149197758|ref|ZP_01874808.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
gi|149139328|gb|EDM27731.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
Length = 184
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
TN+ V D E G + D+ + A + D + I
Sbjct: 4 TNNLVWMDLEMTGLNPDNDKIIEIATLVTDSELNIIAK 41
>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
petrophila RKU-1]
gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
Length = 1367
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 45/223 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
FV+ D+ET G D +D + V++ + + ++ KP+ + + IT
Sbjct: 355 NATFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTLI-KPSREI--SRRSSEIT 410
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E EF + N+ I+ +N FD + R +
Sbjct: 411 GITQEMLENKRSIEEVLPEFLGFLE------NSIIVAHNA-NFDYRFLR--LW--IKKVM 459
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W+ D L A + ++ S+ L + G+ H A
Sbjct: 460 GLDWERP--YIDTL-------ALAKSLLK-------MRSYSLDSVVEKLGLGPFRHHRAL 503
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
D T ++F + K + KL +I+N+
Sbjct: 504 DDARVT-----------AQVFLRFVEMMKKIGITKLSEIENLK 535
>gi|153008882|ref|YP_001370097.1| exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
ATCC 49188]
gi|151560770|gb|ABS14268.1| Exonuclease RNase T and DNA polymerase III [Ochrobactrum anthropi
ATCC 49188]
Length = 213
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 42/208 (20%)
Query: 5 FVIYDYETFGRDV------ALDRP--AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-P 55
++ +D ET G A +P A A + D +I+ + ++ +P +P P
Sbjct: 7 YLTFDTETNGLFNFKLPADAEGQPRLAHLAMIWADEDGNEIKRKD-YYIRPDGWTMPQGP 65
Query: 56 E-AVFITGITPQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
A + G+T + + +G V+ A ++R I + + +N ++D R
Sbjct: 66 GSAGAVNGLTDEFLMENGGHIDAVLHA-YTREIER-----GLIAVAFNA-QYDLKIMRGE 118
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP-DGIQWPSRDDGATSFKLQDLALAN- 167
R DL + I P G+ + +G FK L+ A
Sbjct: 119 LRRAGMP-------------DLFEKTLNICVMRPMTGLCQLPKRNGFG-FKFPKLSEALE 164
Query: 168 --GIEHVNAHDAKADVY-ATLALVWLIR 192
G AH A D A + + L+R
Sbjct: 165 YFGHSLEGAHQAINDAEGALIVMRELMR 192
>gi|94985918|ref|YP_605282.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
11300]
gi|94556199|gb|ABF46113.1| DNA polymerase III, epsilon subunit [Deinococcus geothermalis DSM
11300]
Length = 180
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 16/120 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPAD---DYLPDPE-AV 58
+ V++D ET G D + +R VD + + E E +P + + +P P A
Sbjct: 2 NVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETL-VRPQNAAGEVVPIPWRAQ 60
Query: 59 FITGIT---PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ GI+ Q A G V EF + + +NI FD + R R
Sbjct: 61 RVHGISDAMVQDAPELGQVLPEFLDFV-------GRSAVAAHNIGFDSSFMRAAARRCGL 113
>gi|238062933|ref|ZP_04607642.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
gi|237884744|gb|EEP73572.1| DNA polymerase III, epsilon subunit [Micromonospora sp. ATCC 39149]
Length = 286
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G DR + A VR++ ++ PDP F+ IT
Sbjct: 37 FVVVDVETTGLSSTSDRIVEIALVRIEGG-RVVDEWATL---VDPGRDPDP--TFVHHIT 90
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ G F+ + S + ++ +N RF++ + F R +
Sbjct: 91 AEML--SGAP--TFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGISTAP----- 141
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
L + + + + P +F+L GIE +AH A D AT
Sbjct: 142 -------LPAVCTLR-LARQVLAAP-------NFQLVSCCTVYGIELHDAHTALGDTRAT 186
Query: 185 LALVWLIREKK 195
L+ +
Sbjct: 187 ---AQLLPRHQ 194
>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
Length = 1439
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 35/185 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---AVFI 60
+V++D ET G DR + + V++ + I+ E F DP +
Sbjct: 419 TYVVFDTETTGLSAIYDRVIELSAVKM-QNSNVIDQFEEFI---------DPGFHLSERT 468
Query: 61 TGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T +T + G E ++ + F + ++G+N + FD + + R+
Sbjct: 469 TNLTSITDEMVHGSKSEEEVFKLFREFCG-DAIVVGHN-VTFDMGFMNTGYVRHGM---- 522
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N ++D + P+ ++L LA + + H A
Sbjct: 523 HEMQNP-----IIDTLTLARFLYPNL----------RGYRLNTLAKKFDVSLEHHHRAIY 567
Query: 180 DVYAT 184
D T
Sbjct: 568 DAETT 572
>gi|293393221|ref|ZP_06637536.1| oligoribonuclease [Serratia odorifera DSM 4582]
gi|291424367|gb|EFE97581.1| oligoribonuclease [Serratia odorifera DSM 4582]
Length = 181
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 50/199 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N+ + D E G D DR + A + D + V D+ L A+
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVIAVHQPDEQL----ALMDDW 61
Query: 60 ----ITGI--------TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
TG +P A + F ++ C N++ D R
Sbjct: 62 NVRTHTGSGLVQRVKDSPYDAQAAELATITFLQQWVPA-GKSPICG---NSVGQD----R 113
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+R + + D+ + + P+ +
Sbjct: 114 RFLFR-YMPQLEAYFHY--RYLDVSTLKELARRWKPEILV-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLA 186
G + H A D+ ++A
Sbjct: 151 GFKKQGTHQALDDIRESVA 169
>gi|289209008|ref|YP_003461074.1| exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
K90mix]
gi|288944639|gb|ADC72338.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
K90mix]
Length = 188
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D DR + A + D++ + V + L EA+
Sbjct: 5 AENLIWIDLEMTGLDPQNDRIIEVATIVTDKELNILAEGPVLAIYQPTEVL---EAM--- 58
Query: 62 GITPQKALRDGVVEAEFSRRIH 83
+ R E+ RI
Sbjct: 59 ----DEWNRRTHGESGLIERIR 76
>gi|209731072|gb|ACI66405.1| Oligoribonuclease, mitochondrial precursor [Salmo salar]
Length = 207
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFF-------------CK 46
M V D E G D+ D+ + A + D + + + CK
Sbjct: 10 MRQRMVWVDLEMTGLDIEKDQIIEMACIITDSELNVLSEGPNLIINTTSELLDGMDDWCK 69
Query: 47 PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + I+ Q+A E EF I Q + P C + N++ D +
Sbjct: 70 EHHGNSGLTQAVRDSKISLQQA------EYEFLSFIRQH-TPPGHCPLAGNSVHADKKFL 122
>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
Length = 1433
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D E ++ + +T + +N FD + F + D
Sbjct: 472 IT-DDMLTDAPEVGEVFKKFESWMGD-HTLVA--HNASFDMGFLNVGFKKCGLD------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KPKNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
Length = 1433
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D E ++ + +T + +N FD + F + D
Sbjct: 472 IT-DDMLTDAPEVGEVFKKFESWMGD-HTLVA--HNASFDMGFLNVGFKKCGLD------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KPKNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
Length = 1433
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D E ++ + +T + +N FD + F + D
Sbjct: 472 IT-DDMLTDAPEVGEVFKKFESWMGD-HTLVA--HNASFDMGFLNVGFKKCGLD------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KPKNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|255615473|ref|XP_002539676.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
gi|223503630|gb|EEF22707.1| DNA polymerase III epsilon subunit, putative [Ricinus communis]
Length = 205
Score = 50.6 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 37/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLP-DPEAVFITG 62
VI D ET G D D+ + V D Q I F + D P PE+ +
Sbjct: 5 VILDTETTGTDYVQDKVIELGMVAFDYCPQTGMIGDVHGTFNQLEDPGFPIPPESTKVHH 64
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS--RNIFYRNFYDSYRW 120
IT + + + E + F P + II +N+ RFD + R +++ +
Sbjct: 65 ITDEMVAGKSINDEE-----VEAFIKPASIIIAHNS-RFDRRFVEPRWPIFQS--KPWAC 116
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
++ I W +G S KL+ LA +G H H A D
Sbjct: 117 TFAQ---------------------IDW--DAEGLGSSKLEFLAYRSGF-HYEGHRASTD 152
Query: 181 VYATLAL 187
+A L +
Sbjct: 153 CHALLEV 159
>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
Length = 1442
Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 37/193 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + V++ + ++ F C +P PE +TGI
Sbjct: 429 TYVVFDLETTGFSPVTDEIIEIGAVKIHGN-KILDRFSAFVC--PGREIP-PEVQELTGI 484
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR----NIFYRNFYDSYR 119
T + D AE + F ++ +N +FD + R I R
Sbjct: 485 T-NNMVSDAPPIAEVLPKFIDFV---GDAVLVAHNAQFDTGFLRANMEKILNRTLAQPV- 539
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
LD + PD + KL+ LA ++ N H A
Sbjct: 540 ------------LDTLGLARGLFPD----------MKNHKLKTLAKEFNVKLENHHRAVD 577
Query: 180 DVYATLALVWLIR 192
D AT L LI+
Sbjct: 578 DAEATAQL--LIK 588
>gi|171742687|ref|ZP_02918494.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
27678]
gi|171278301|gb|EDT45962.1| hypothetical protein BIFDEN_01801 [Bifidobacterium dentium ATCC
27678]
Length = 328
Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 34/199 (17%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + + D+ET G + A DR + V V + E + D A +I
Sbjct: 14 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLI-RVHRDI----GAQWI 68
Query: 61 TGITPQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SY 118
I+ + + E E +R + + + +N + FD + + + R D
Sbjct: 69 HHISAVELIH--APEFEGIARELRDLLA--GRVFVAHN-VAFDSKFLLSEYRRLGTDIPV 123
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
NS M S I G S L D GI++ +AH A
Sbjct: 124 -------NSH-----TMLCTMKLSRSLI-------GVGS--LADCCREFGIDNEDAHSAL 162
Query: 179 ADVYATLALVWLIREKKPK 197
+D +AT L+ + + P+
Sbjct: 163 SDAHATALLLGRLMDADPE 181
>gi|308234286|ref|ZP_07665023.1| CRISPR-associated endoribonuclease Cas2 [Atopobium vaginae DSM
15829]
Length = 297
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 30/191 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYL-PDPEAVFITG 62
FVI D ET G + D+ + +R + + C D L P +TG
Sbjct: 130 FVILDIETSGLNETDDKIIEIGAIR------ICDKQVDDYQCLIKRDSLNLSPAITQLTG 183
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+T + GV + QF ++GYN I FD + N R+ +
Sbjct: 184 LTDIELANRGVNPNLALNGLKQFIGHLP--VLGYN-IAFDMRFINNEL-RSMNEELL--- 236
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N D++ ++ F S+ L ++ GI H A D
Sbjct: 237 --DNREIDVMRFIKKEKMF-------------LESYALDNVLKVYGISATVPHRALGDAK 281
Query: 183 ATLALVWLIRE 193
L + +
Sbjct: 282 LIAKLALKVNK 292
>gi|260769996|ref|ZP_05878929.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
gi|260615334|gb|EEX40520.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
gi|315182520|gb|ADT89433.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
Length = 238
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 47/210 (22%), Positives = 72/210 (34%), Gaps = 42/210 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPE---- 56
+ + +D+ET G D D+ V ++I+ ++E F + PE
Sbjct: 51 HDLLAFDFETSGVDAGHDQILSLG--WVGMTLDQIDVAASEEIFVR-------HPEFVTA 101
Query: 57 -AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIR-FDDYYSRNIFYRNF 114
+ I ITPQ L GV E R+ + + G R F Y R F
Sbjct: 102 DSAVINHITPQ-VLAHGVTLDEAMDRLFGQLAGKIALVHGACIERAFVAQYMRERFAIEH 160
Query: 115 YDSYRWSWDNGNSRWDLLDV-MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ D L + + YA + TSF+L D+ + N
Sbjct: 161 FP---------CVWVDTLQIEKQMTYAGKTEC---------GTSFQLNDVRTRYALPQYN 202
Query: 174 AHDAKADVYATLA-----LVWLIREKKPKL 198
AH A D AT + L + PK+
Sbjct: 203 AHSAAIDALATAELFTAQMKSLFKNHPPKV 232
>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus ATCC 10987]
Length = 970
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV +++E K FEY
Sbjct: 569 ATGYLLVKMLKEVIEKGFEY 588
>gi|225077243|ref|ZP_03720442.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
NRL30031/H210]
gi|224951387|gb|EEG32596.1| hypothetical protein NEIFLAOT_02298 [Neisseria flavescens
NRL30031/H210]
Length = 230
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
N+ D E G + DR + A + D + ++V+ +D+ L D
Sbjct: 50 ANNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTA 109
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ + EAE + + F S
Sbjct: 110 THGRTGLTQRVRESKLTEAEVEQNLLDFMSAW 141
>gi|154246978|ref|YP_001417936.1| DNA polymerase III subunit epsilon [Xanthobacter autotrophicus Py2]
gi|154161063|gb|ABS68279.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
autotrophicus Py2]
Length = 298
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 65/184 (35%), Gaps = 38/184 (20%)
Query: 9 DYETFGRDVALDRPAQFA----GVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGI 63
D ET G D D + A +D + +S + +P++ L PE ITGI
Sbjct: 48 DVETTGLDPQRDEIIELAMTPFSYGLDGTIFSVGDSFQGLR-QPSEPIL--PEITAITGI 104
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + A + F+ P + I +N FD F+ F D +
Sbjct: 105 TNEMVAGQIIDPA-----VVATFAAPASLFIAHNA-AFD-----RRFFERFSDVFSTK-- 151
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+A S I W +G KL LA A G + H A D A
Sbjct: 152 --------------PWACSLSQIDW--AAEGFQGAKLAYLAQAAGFFYDR-HRAMHDCLA 194
Query: 184 TLAL 187
T+ L
Sbjct: 195 TIEL 198
>gi|269215783|ref|ZP_06159637.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
gi|269130733|gb|EEZ61809.1| DNA polymerase III, alpha chain [Slackia exigua ATCC 700122]
Length = 291
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 31/193 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVF 59
+ + +V+ D ET G + D + A +RV T+ F C L D A
Sbjct: 124 LPSEYVVVDIETTGLNPNKDEIIELAAIRVRGG----RETDAFQCLVRCGGELSDAIAKL 179
Query: 60 ITGITPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TG++ + + +G+ +E + F + + +N FD + ++ +D +
Sbjct: 180 -TGLSHSRLMAEGLILENALMNFL--EFVSDDLIVA--HNAEFDIGFIQSACEELDWDDF 234
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N D L + R + P D +L LA +E+ H A
Sbjct: 235 ------DNDYLDTLALARK---------KLPQISDH----RLSSLAERLHLENRQPHRAL 275
Query: 179 ADVYAT-LALVWL 190
+D T LV L
Sbjct: 276 SDCRLTHCLLVKL 288
>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
Length = 1447
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 34/183 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFIT 61
+ ++D ET G D +F G + D + F KP +P P V +T
Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIVKD---RTCIKSLQLFIKPP---VPIPAHIVELT 451
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ ++ +R+ AE + +I F I+ +N FD + + R
Sbjct: 452 GIS-EEHVRNAKSFAECADQILDFIGDS---ILVAHNADFDYNFLNSELVRIGRKPL--- 504
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKA 179
N D LD+ R++ ++L +A + GI + AH A
Sbjct: 505 ---DNPVIDTLDLARSM--------------QDRKGYRLGQIARSYGIRYDEDVAHRADY 547
Query: 180 DVY 182
D
Sbjct: 548 DAE 550
>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
mycoides subsp. mycoides SC str. Gladysdale]
Length = 1482
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 46/191 (24%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------ 59
V +D ET G LD +F + + + E ++ D L P+
Sbjct: 436 VFFDLETTGLSPELDEIIEFGAI--EYNLKTGERKKI-------DILIKPKTKLKAFTQK 486
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T IT + +E F ++I++ I+ +N FD F + +
Sbjct: 487 LTNITEKMLEDKPSIEQAF-KQINEIIKD---AILVAHNANFD-----FTFLSYWSEKLG 537
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH-- 175
+S N+ D L + R IY PD S +L LA I + AH
Sbjct: 538 YS-KLENTIIDTLTISRIIY---PDL----------KSHRLGSLAKRVNISYDPSIAHRG 583
Query: 176 ----DAKADVY 182
D AD+Y
Sbjct: 584 DYDADILADIY 594
>gi|284799973|ref|ZP_05985349.2| oligoribonuclease [Neisseria subflava NJ9703]
gi|284796237|gb|EFC51584.1| oligoribonuclease [Neisseria subflava NJ9703]
Length = 230
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
N+ D E G + DR + A + D + ++V+ +D+ L D
Sbjct: 50 ANNLCWLDMEMTGLNPEHDRIIEVAMIITDSDLNVLAQSDVYVIHQSDELLDGMDEWNTA 109
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ + EAE + + F S
Sbjct: 110 THGRTGLTQRVRESKLTEAEVEQNLLDFMSAW 141
>gi|239631939|ref|ZP_04674970.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239526404|gb|EEQ65405.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 309
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 43/198 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGI 63
+++ D ET G D Q + ++V + I++ + + KP+ PE V+ITGI
Sbjct: 45 YIVLDIETTGLSSVSDDIIQLSALKVKED-KVIDTFDS-YVKPSTSI---PENVVYITGI 99
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYS-RNIFYRNFYDS 117
T E + I + ++G+N IRFD + N FY ++
Sbjct: 100 T--------NSTVENAPEIFEIMPKFVSFTEGMPLVGHNIIRFDIPFIVNNGFYYEDIEA 151
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
N + P+ ++ + KL L GI ++H+A
Sbjct: 152 LDTWRLAKNKDF-------------PEPLK---------NLKLPTLKEYFGIS-GSSHNA 188
Query: 178 KADVYATLALVWLIREKK 195
D T+ + +R+ K
Sbjct: 189 LDDCKTTITVYRHLRDNK 206
>gi|332311763|gb|EGJ24858.1| DNA polymerase III polC-type [Listeria monocytogenes str. Scott A]
Length = 1457
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 440 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 495
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 496 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 545
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 546 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 589
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 590 AEATAYLAWKLIKDAK 605
>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
marthii FSL S4-120]
gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
marthii FSL S4-120]
Length = 1367
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 426 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 481
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 482 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 531
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 532 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 575
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 576 AEATAYLAWKLIKDAK 591
>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
monocytogenes FSL F2-208]
Length = 1447
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 430 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 485
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 486 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 535
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 536 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 579
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 580 AEATAYLAWKLIKDAK 595
>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
Length = 1144
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 127 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 182
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 183 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 232
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 233 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 276
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 277 AEATAYLAWKLIKDAK 292
>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes
Clip81459]
gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 1444
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
Length = 1444
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
Length = 1444
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
monocytogenes HCC23]
gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
monocytogenes HCC23]
gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
monocytogenes L99]
Length = 1443
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 426 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 481
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 482 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 531
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 532 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 575
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 576 AEATAYLAWKLIKDAK 591
>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
Length = 1444
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
Length = 1444
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|121634222|ref|YP_974467.1| oligoribonuclease [Neisseria meningitidis FAM18]
gi|166216273|sp|A1KS35|ORN_NEIMF RecName: Full=Oligoribonuclease
gi|120865928|emb|CAM09665.1| putative oligoribonuclease [Neisseria meningitidis FAM18]
gi|261393203|emb|CAX50822.1| oligoribonuclease [Neisseria meningitidis 8013]
gi|325131506|gb|EGC54213.1| oligoribonuclease [Neisseria meningitidis M6190]
gi|325137552|gb|EGC60134.1| oligoribonuclease [Neisseria meningitidis ES14902]
gi|325141599|gb|EGC64064.1| oligoribonuclease [Neisseria meningitidis 961-5945]
gi|325197638|gb|ADY93094.1| oligoribonuclease [Neisseria meningitidis G2136]
Length = 187
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESLHTEAEVEQKLLDFMSEW 95
>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
Length = 1444
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes serotype 4b str.
F2365]
gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
monocytogenes str. 4b H7858]
gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
monocytogenes FSL N1-017]
gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
monocytogenes serotype 4b str. F2365]
gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
monocytogenes str. 4b H7858]
gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
monocytogenes FSL N1-017]
gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
Length = 1444
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD F Y+
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLAWKLIKDAK 592
>gi|308177924|ref|YP_003917330.1| DNA polymerase III subunit epsilon [Arthrobacter arilaitensis
Re117]
gi|307745387|emb|CBT76359.1| putative DNA polymerase III subunit epsilon [Arthrobacter
arilaitensis Re117]
Length = 227
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 25/194 (12%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G D R + V +D + + + E +P+ A + GI+ +
Sbjct: 12 FDLETTGVDTNTARIVTASVVLLDAEGNVVNNREWL---VDPGVEIPEAAA-AVHGISTE 67
Query: 67 KALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
KA +G + I F+ I+ +N +D + R + +
Sbjct: 68 KARAEGAPAKQSVEEILNLLKFASEQAPIVAFNA-SYDFSVLYSEAVRYDLEPFF----P 122
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
GN D + + + F G + L G+ NAH + AD A
Sbjct: 123 GNVI-DPFIIDKQVDRFR----------KGKRT--LAAACEFYGVVLENAHTSLADAVAC 169
Query: 185 LALVWLIREKKPKL 198
+ + + E+ P+L
Sbjct: 170 VEVARQLGERYPQL 183
>gi|218767556|ref|YP_002342068.1| oligoribonuclease [Neisseria meningitidis Z2491]
gi|11133783|sp|Q9JW09|ORN_NEIMA RecName: Full=Oligoribonuclease
gi|121051564|emb|CAM07862.1| putative oligoribonuclease [Neisseria meningitidis Z2491]
gi|319409820|emb|CBY90128.1| oligoribonuclease [Neisseria meningitidis WUE 2594]
Length = 187
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 95
>gi|309379479|emb|CBX21845.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 187
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + DR + A + D + +EV+ +D+ L D
Sbjct: 5 NNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 65 HGRTGLTQRVRESLHTEAEVEQKLLDFMSEW 95
>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit
[Anaerococcus vaginalis ATCC 51170]
gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit
[Anaerococcus vaginalis ATCC 51170]
Length = 1398
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/209 (20%), Positives = 75/209 (35%), Gaps = 54/209 (25%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVF 59
F+++D ET G +D+ + V+++ + ++ + E +P + V
Sbjct: 384 FIVFDLETTGLSKYIDKITEIGAVKIENGEIIEVFNELVNPEKM--------IPQ-KVVE 434
Query: 60 ITGITPQKALRDG-VVE--AEFSRRIHQFFSVPNTCIIGYNN---IRFDDYYSRNIFYRN 113
+TGIT + + + E +F FS ++ +G N I F N+ Y+
Sbjct: 435 LTGITNEMVMDKPKIDEVLPKFL-----EFSK-DSYFVGQNTDFDIGFIKEACDNLSYK- 487
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
++ LD + A P G F L LA G+ N
Sbjct: 488 -FEPIY------------LDTLPMARAVFPTM--------GR--FSLDKLAKKLGVGPFN 524
Query: 174 AHDAKADVYAT----LALVWLIREKKPKL 198
H A D T + L I++K L
Sbjct: 525 HHRASDDAMTTAKIFIKLFEKIKDKNKDL 553
>gi|56696683|ref|YP_167044.1| DNA polymerase III epsilon subunit family exonuclease [Ruegeria
pomeroyi DSS-3]
gi|56678420|gb|AAV95086.1| exonuclease, DNA polymerase III, epsilon subunit family [Ruegeria
pomeroyi DSS-3]
Length = 470
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 42/216 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
F ++D ET G D Q VRV + +P P + +
Sbjct: 278 FAVFDTETTGLLPHKDEIVQIGAVRVVKGRIVPGERIDQLVDPGRPIP-----PASTRVH 332
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
G++ A+ G + + R F+ + +N FD + R R D
Sbjct: 333 GVS--DAMVAGAPDIVAAARQFHQFARDAVIVA--HNAPFDIAFLRRHGPRCGLD----- 383
Query: 122 WDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHDA 177
WD +LD + + L L G I H A
Sbjct: 384 -------WDHPILDTVLLSAVLFGAS----------ETHTLDALCDRLGVTIPAPLRHTA 426
Query: 178 KADVYAT----LALVWLIREKKPKLFEYLYDYRNKN 209
D AT ++ ++R + F + K+
Sbjct: 427 LGDAQATAEVLCRMLPMLRARGLDTFGAVISETRKH 462
>gi|86131778|ref|ZP_01050375.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
gi|85817600|gb|EAQ38774.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
Length = 257
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 29/190 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVF 59
+T +D ET G +VA DR + + ++V E F + +P P
Sbjct: 5 ITRPICFFDLETTGVNVAKDRIVEISILKVFPD----GREEEFTERINP-TVPIPAVTTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GI+ AE ++ I+ + + G+N+ RFD R+ D
Sbjct: 60 VHGISDADVADKPTF-AERAKEIYDIIKDSD--LAGFNSNRFDIPLLVEELLRSGID--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N N +DV + + + K DL NAH A A
Sbjct: 114 FDMKNRN----AIDVQNIFHKMEQRTLVAAYK---FYCDK--DLT--------NAHSASA 156
Query: 180 DVYATLALVW 189
D +AT ++
Sbjct: 157 DTWATYEVLK 166
>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
bovis PG45]
Length = 1458
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V +D ET G +F V +++ + + T FF KP D +TGI
Sbjct: 423 SYVSFDIETTGLSPKFHEIIEFGAVDINQDLK-VGKTTQFFIKPKDKIGS--FTTELTGI 479
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
T Q G+ E +I+ +N +FD + + F N
Sbjct: 480 TQQMLDSKGLYIKEGLEKIYDCLDGKIAIA---HNAKFDFNFLKEQFRLN 526
>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
700755]
gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC
700755]
Length = 1452
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 50/212 (23%), Positives = 71/212 (33%), Gaps = 43/212 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQ---------WEKIESTEVFFCKPADDYLPDP 55
++I+D ET G + P D W+ + A DYL P
Sbjct: 2 YIIFDTETTGLPKRWNAPI------TDTDNWPRAIQIAWQVHDEWGNLV--KAKDYLIRP 53
Query: 56 E-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
E A I GI+ AL+ G ++ S ++G N+ FD
Sbjct: 54 EGFDIPYDAERIHGISTALALQKGESLDMVLAEFNEALSESK-FVVG-QNVGFDVNVMGA 111
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN- 167
F+R +S S + V+ + Q P G FKL L +
Sbjct: 112 EFHRAQLESLMAS----------MPVLDTCTEKTAKLCQIPGGRGGK--FKLPTLTELHQ 159
Query: 168 ---GIEHVNAHDAKADVYATLAL-VWLIREKK 195
G AH+A ADV AT + LIR
Sbjct: 160 YLFGQPFNEAHNATADVEATTRCFLELIRTGN 191
>gi|307326641|ref|ZP_07605834.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
4113]
gi|306887625|gb|EFN18618.1| DNA polymerase III, epsilon subunit [Streptomyces violaceusniger Tu
4113]
Length = 638
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 59/182 (32%), Gaps = 30/182 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A + V E+ DP V + G+T ++
Sbjct: 24 DVETSGLMARRDRVLSVAVITVGPDGEQTGEFSTL---LNPGC--DPGPVKVHGLTVERL 78
Query: 69 LRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G + + RI ++ +N +FD + + F R +W
Sbjct: 79 --QGAPTFDQVAGRIGAMLQDR---VLVAHNAQFDYDFLAHEFAR------ARTW----- 122
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
L V + + + + P D KL LA GI AHDA D +
Sbjct: 123 ----LPVSQRLCTLALNRQVDPPTGD----MKLGTLAAHYGIPQQRAHDALDDTRVLAGI 174
Query: 188 VW 189
+
Sbjct: 175 LR 176
>gi|227357138|ref|ZP_03841507.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
gi|227162670|gb|EEI47637.1| exoribonuclease II [Proteus mirabilis ATCC 29906]
Length = 192
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D Q +
Sbjct: 17 NNLIWIDLEMTGLDPERDRIIEIATIVTDPQLNILAE 53
>gi|159906145|ref|YP_001549807.1| exonuclease RNase T and DNA polymerase III [Methanococcus
maripaludis C6]
gi|159887638|gb|ABX02575.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
maripaludis C6]
Length = 191
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 16/182 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V D ET G + AQ + + D+ + + ++ + D + A + G+T
Sbjct: 2 YVFLDTETTGLHPG--QIAQLSYLVTDKNLKLKKVFNQYY---SVDRM-SRSAAKVHGLT 55
Query: 65 PQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
L +G+ + + + IIG+N I FD + + F R
Sbjct: 56 MDILDELSNGMTFEDTVDEVRDDLED--SVIIGHN-ISFDIRFLKAEFER--LGPEYIPK 110
Query: 123 DNGNSRWDLLDVMRA---IYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D + + + + P I+ + L+ G V HDA+
Sbjct: 111 DKFCTMFHFTPICKLPGQKRYKRPKLIELMEFLEQCPHEGLEFTKETYGCSDVGFHDARY 170
Query: 180 DV 181
D
Sbjct: 171 DT 172
>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
Length = 1441
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 30/201 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G D + A V++ E I+ E F + + +TG
Sbjct: 424 DTYVVFDVETTGLSAVYDTIIELAAVKI-HDGEIIDRFESFA---NPHHPLSATTINLTG 479
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT L + E E + + F ++ +N FD + + +
Sbjct: 480 ITDD--LVENAPEVE---EVLKKFHEWAGDAVLVAHNASFDMGFLNVGYKKMGI------ 528
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
G + ++D + PD + +L LA +E H A D
Sbjct: 529 ---GKASNPVIDTLELARFLYPD----------MKNHRLNTLAKKFDVELTQHHRAIYDA 575
Query: 182 YAT-LALVWLIREKKPKLFEY 201
AT L+ +++ K EY
Sbjct: 576 EATGYLLLKMLKHADEKGIEY 596
>gi|328943837|ref|ZP_08241302.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Atopobium vaginae DSM 15829]
gi|327491806|gb|EGF23580.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Atopobium vaginae DSM 15829]
Length = 337
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 30/191 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYL-PDPEAVFITG 62
FVI D ET G + D+ + +R + + C D L P +TG
Sbjct: 170 FVILDIETSGLNETDDKIIEIGAIR------ICDKQVDDYQCLIKRDSLNLSPAITQLTG 223
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+T + GV + QF ++GYN I FD + N R+ +
Sbjct: 224 LTDIELANRGVNPNLALNGLKQFIGHLP--VLGYN-IAFDMRFINNEL-RSMNEELL--- 276
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N D++ ++ F S+ L ++ GI H A D
Sbjct: 277 --DNREIDVMRFIKKEKMF-------------LESYALDNVLKVYGISATVPHRALGDAK 321
Query: 183 ATLALVWLIRE 193
L + +
Sbjct: 322 LIAKLALKVNK 332
>gi|83643302|ref|YP_431737.1| putative exonuclease [Hahella chejuensis KCTC 2396]
gi|83631345|gb|ABC27312.1| putative exonuclease [Hahella chejuensis KCTC 2396]
Length = 192
Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 59/189 (31%), Gaps = 32/189 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D D+ A+ + V D + + V P PEA I G+T +K
Sbjct: 21 DTETTGLD---DQ-AEVIEISVMDMRGNVLFDQLVRPLNPVP-----PEAAEIHGVTNEK 71
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ ++ YN FD + +W
Sbjct: 72 LANKPNFPDVYISLWRAI---GGRTVVAYNA-DFDRRLLKQTCAAYRLPMIEANWQ---- 123
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN---GIEHVNAHDAKADVYAT 184
YA P G ++ Q LA A GIE AH A AD + T
Sbjct: 124 ------CAMNAYARYRKE---PDAKRGG--YRRQSLAKAAAQMGIEVYGAHRAVADCFTT 172
Query: 185 LALVWLIRE 193
+ ++ +
Sbjct: 173 VEVIRAVAA 181
>gi|283456242|ref|YP_003360806.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
gi|283102876|gb|ADB09982.1| dnaQ DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
Length = 317
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 34/199 (17%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + + D+ET G + A DR + V V + E + D A +I
Sbjct: 3 SKGYAVVDFETTGLNPARGDRAIEIGLVHVAPDGMLEDEHETLI-RVHRDI----GAQWI 57
Query: 61 TGITPQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SY 118
I+ + + E E +R + + + +N + FD + + + R D
Sbjct: 58 HHISAVELIH--APEFEGIARELRDLLA--GRVFVAHN-VAFDSKFLLSEYRRLGTDIPV 112
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
NS M S I G S L D GI++ +AH A
Sbjct: 113 -------NSH-----TMLCTMKLSRSLI-------GVGS--LADCCREFGIDNEDAHSAL 151
Query: 179 ADVYATLALVWLIREKKPK 197
+D +AT L+ + + P+
Sbjct: 152 SDAHATALLLGRLMDADPE 170
>gi|262194028|ref|YP_003265237.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077375|gb|ACY13344.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 60/190 (31%), Gaps = 25/190 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
V D ET G D + A +RV Q E V +P +D DPEA+ + G
Sbjct: 4 LVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDA--DPEALEVNG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
++A D V + + + G+N + FD + W
Sbjct: 62 YR-RRAWADAVSLGDAMAELAPML--EGAVLAGHN-VAFDRRFL----------EVAW-- 105
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
+A + +P G S L + G+ H A DV
Sbjct: 106 ----DCVGHRPETLDHHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161
Query: 182 YATLALVWLI 191
A L + +
Sbjct: 162 RACLGVARRL 171
>gi|12519147|gb|AAG59361.1|AE005649_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13364618|dbj|BAB38564.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|209750348|gb|ACI73481.1| hypothetical protein ECs5141 [Escherichia coli]
gi|209750350|gb|ACI73482.1| hypothetical protein ECs5141 [Escherichia coli]
gi|209750352|gb|ACI73483.1| hypothetical protein ECs5141 [Escherichia coli]
gi|209750354|gb|ACI73484.1| hypothetical protein ECs5141 [Escherichia coli]
gi|209750356|gb|ACI73485.1| hypothetical protein ECs5141 [Escherichia coli]
Length = 204
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65
>gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
Length = 175
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 31/192 (16%)
Query: 5 FVIYDYETF-----GRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAV 58
V YD ET G+ D +F V V +++S +P+ L P +V
Sbjct: 2 IVFYDVETTVPEVKGQ--GYD-ILEFGAVVVSARGLGELDSFTTL-VRPSSLALVSPRSV 57
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI Q +L E + R+H G+N +RFD+ + F S
Sbjct: 58 SCNGI-VQDSLVGAPSFLEIADRVHALLH--GRVWAGHNILRFDNLRIKEAF-----ASI 109
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ D ++R + A + K+ LA G+ H +
Sbjct: 110 GRAGPEAAGHIDTFPLLRKSFGQR------------AGNLKMATLASYFGL-GKQEHRSL 156
Query: 179 ADVYATLALVWL 190
ADV + ++ L
Sbjct: 157 ADVRMNIEVLKL 168
>gi|229160592|ref|ZP_04288587.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
R309803]
gi|228623002|gb|EEK79833.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
R309803]
Length = 933
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|222622820|gb|EEE56952.1| hypothetical protein OsJ_06659 [Oryza sativa Japonica Group]
Length = 348
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 43/197 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCK-------PADDYLPDPE 56
V D E G DVA DR + A + D + ++IE ++ + +
Sbjct: 169 LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 228
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYR 112
A +G+T Q+ L+ + E + ++ F I G N + D F +
Sbjct: 229 A---SGLT-QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAG--NSVYVDLL----FLK 278
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
N+ + + D+ +M I+W ++ T K
Sbjct: 279 NYMPQLAAIFSH--VIVDVSSIMALC-------IRWYPKERKRTPQK------------G 317
Query: 173 NAHDAKADVYATLALVW 189
H A D+ ++A +
Sbjct: 318 KKHRAMNDIKESIAELK 334
>gi|115446061|ref|NP_001046810.1| Os02g0465500 [Oryza sativa Japonica Group]
gi|47496882|dbj|BAD19846.1| putative oligoribonuclease [Oryza sativa Japonica Group]
gi|47497504|dbj|BAD19557.1| putative oligoribonuclease [Oryza sativa Japonica Group]
gi|113536341|dbj|BAF08724.1| Os02g0465500 [Oryza sativa Japonica Group]
gi|215687346|dbj|BAG91911.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 43/197 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCK-------PADDYLPDPE 56
V D E G DVA DR + A + D + ++IE ++ + +
Sbjct: 68 LVWIDLEMTGLDVAKDRILEIACIITDGKLTKQIEGPDLVINQKKDLLDNMDEWCKTHHA 127
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYNNIRFDDYYSRNIFYR 112
A +G+T Q+ L+ + E + ++ F I G N + D F +
Sbjct: 128 A---SGLT-QRVLQSTISEHDAETQVLDFVKKHVGSSPPLIAG--NSVYVDLL----FLK 177
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
N+ + + D+ +M I+W ++ T K
Sbjct: 178 NYMPQLAAIFSH--VIVDVSSIMALC-------IRWYPKERKRTPQK------------G 216
Query: 173 NAHDAKADVYATLALVW 189
H A D+ ++A +
Sbjct: 217 KKHRAMNDIKESIAELK 233
>gi|268680225|ref|YP_003304656.1| DNA polymerase III subunit epsilon [Sulfurospirillum deleyianum DSM
6946]
gi|268618256|gb|ACZ12621.1| DNA polymerase III, epsilon subunit [Sulfurospirillum deleyianum
DSM 6946]
Length = 260
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 67/197 (34%), Gaps = 39/197 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I D E G ALD + V V++ + + D LP+ V +TGIT
Sbjct: 71 FCIVDIEANGSKPALDAIIEIGAVMVEKG-KIVGEFSSLA---KTDVLPE-SIVQLTGIT 125
Query: 65 PQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ E F+ ++ + + + +N + FD Y+ + +
Sbjct: 126 --------LEELSFAPSLNSVLEGFRLFIKDAVFVAHN-VNFDYYFISHSLEMAGFGPLL 176
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N R D +D + I+ P L LA GI N H A
Sbjct: 177 ------NRRLDTID-------LARKCIEAPKYG-------LSALAEHLGITFENHHRALY 216
Query: 180 DVYATLALVWLIREKKP 196
D AT ++ + P
Sbjct: 217 DAKATTEVLLHVFNNLP 233
>gi|91775826|ref|YP_545582.1| oligoribonuclease [Methylobacillus flagellatus KT]
gi|91709813|gb|ABE49741.1| Exonuclease [Methylobacillus flagellatus KT]
Length = 183
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ + D E G DR + A V D + + + V +D L
Sbjct: 6 NDNLIWLDMEMSGLQPDSDRILEVAAVVTDAELNVLGESPVLVIHQSDAVL 56
>gi|30043801|gb|AAP19520.1| hypothetical protein S4584 [Shigella flexneri 2a str. 2457T]
gi|56384132|gb|AAN45737.2| orf, conserved hypothetical protein [Shigella flexneri 2a str.
301]
gi|110617631|gb|ABF06298.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281603627|gb|ADA76611.1| Oligoribonuclease [Shigella flexneri 2002017]
Length = 204
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65
>gi|56475526|ref|YP_157115.1| exonuclease [Aromatoleum aromaticum EbN1]
gi|56311569|emb|CAI06214.1| conserved hypothetical protein, possibly exonuclease [Aromatoleum
aromaticum EbN1]
Length = 642
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 38/195 (19%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ ++D ET G D + D Q R V+ + + ES E + PE+V I
Sbjct: 451 TYTVFDTETTGLDPSKGDEIIQIGATRIVNSKLLRQESFEQL---IDPERGVSPESVKIH 507
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GITP R+ F +T +I +N FD + +
Sbjct: 508 GITPDMLAGQPT-----IARVLPAFHAFAQDTVLIAHNA-AFDMRFLQ-----------L 550
Query: 120 WSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
G R+D +LD + P+ S +L+ +A + + H A
Sbjct: 551 KETMTG-LRFDQPVLDTLLLSAVVHPN----------QESHRLEAIAERLNLTIIGRHTA 599
Query: 178 KADVYATLA-LVWLI 191
D T L+ LI
Sbjct: 600 LGDAIVTAEVLLKLI 614
>gi|206974778|ref|ZP_03235693.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus H3081.97]
gi|217959123|ref|YP_002337671.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus cereus AH187]
gi|222095271|ref|YP_002529331.1| bifunctional ATP-dependent DNA helicase/DNA polymerase iii subunit
epsilon [Bacillus cereus Q1]
gi|206746797|gb|EDZ58189.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus H3081.97]
gi|217066733|gb|ACJ80983.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus AH187]
gi|221239329|gb|ACM12039.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
Length = 934
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|222147020|ref|YP_002547977.1| DNA polymerase III subunit epsilon [Agrobacterium vitis S4]
gi|221734010|gb|ACM34973.1| DNA polymerase III epsilon chain [Agrobacterium vitis S4]
Length = 236
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + LDR + G+ + + + + PAD + P+A+ + GITP
Sbjct: 4 IVFDTETTGLESKLDRVIEIGGIELFNHF-PTGRSFHVYINPADRAI-HPDALAVHGITP 61
Query: 66 QKALRDGV 73
+ V
Sbjct: 62 EFLKDKPV 69
>gi|324325658|gb|ADY20918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 934
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|293606916|ref|ZP_06689263.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
gi|292814648|gb|EFF73782.1| DNA polymerase III [Achromobacter piechaudii ATCC 43553]
Length = 208
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 58/183 (31%), Gaps = 31/183 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST--EVFFCKPADDYLPDPEAVFITG 62
F++ D ET G A +FA VRV+ V P ++ +TG
Sbjct: 39 FIVADLETTGLSTATCEILEFAAVRVETCGTLAREYTQVVRTAAPVPSFI-----TRLTG 93
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + R GV + +F + ++N FD + R
Sbjct: 94 ITQAEVDRHGVPVMQAFSSFLEFVEDLP---VFFHNASFDRRFLGAAADRTGMP------ 144
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ A + WP S KL LA G + H A ADV
Sbjct: 145 --------FANATHCTLALARRA--WPE----LPSHKLDILARHVGASNPT-HRALADVR 189
Query: 183 ATL 185
T+
Sbjct: 190 TTV 192
>gi|169752556|gb|ACA70074.1| Exonuclease RNase T and DNA polymerase III [Yersinia
pseudotuberculosis YPIII]
gi|186696803|gb|ACC87432.1| Exonuclease RNase T and DNA polymerase III [Yersinia
pseudotuberculosis PB1/+]
Length = 227
Score = 50.2 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 52 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 88
>gi|229195843|ref|ZP_04322602.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
m1293]
gi|228587616|gb|EEK45675.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
m1293]
Length = 934
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|145600855|ref|YP_001164931.1| oligoribonuclease [Yersinia pestis Pestoides F]
gi|108777113|gb|ABG19632.1| oligoribonuclease [Yersinia pestis Nepal516]
gi|108781821|gb|ABG15879.1| oligoribonuclease [Yersinia pestis Antiqua]
gi|145212551|gb|ABP41958.1| oligoribonuclease [Yersinia pestis Pestoides F]
Length = 227
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 52 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 88
>gi|21957334|gb|AAM84211.1|AE013664_6 hypothetical protein y0623 [Yersinia pestis KIM 10]
gi|45435231|gb|AAS60791.1| Oligoribonuclease (3'->5' exoribonuclease) [Yersinia pestis
biovar Microtus str. 91001]
Length = 230
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 55 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 91
>gi|300920814|ref|ZP_07137214.1| exonuclease [Escherichia coli MS 115-1]
gi|537006|gb|AAA97061.1| ORF_o204a [Escherichia coli str. K-12 substr. MG1655]
gi|73858127|gb|AAZ90834.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81243603|gb|ABB64313.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|115515635|gb|ABJ03710.1| oligoribonuclease [Escherichia coli APEC O1]
gi|300412206|gb|EFJ95516.1| exonuclease [Escherichia coli MS 115-1]
Length = 204
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65
>gi|282890058|ref|ZP_06298591.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500064|gb|EFB42350.1| hypothetical protein pah_c010o048 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 231
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 59/185 (31%), Gaps = 46/185 (24%)
Query: 6 VIYDYETFGRDVALDRPAQFA-----GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ YD ET G D + A G R + PEA I
Sbjct: 4 LYYDTETTGIKADRDYVIELAVYDPVGNRTFERL------------INPGVPIPPEATAI 51
Query: 61 TGITPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YD 116
IT + F I + F + +I +NN +FD ++ RN F R+
Sbjct: 52 HHITDEMVA----NAPSFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELP 107
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
W LD ++ +A D + LQ L GI NAH
Sbjct: 108 P-----------WKFLDTLK--WARRY------RNDLPRHT--LQFLRGIYGIAENNAHR 146
Query: 177 AKADV 181
A DV
Sbjct: 147 ALDDV 151
>gi|300117431|ref|ZP_07055221.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus cereus SJ1]
gi|298725266|gb|EFI65918.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus cereus SJ1]
Length = 934
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|229043387|ref|ZP_04191104.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH676]
gi|228725968|gb|EEL77208.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH676]
Length = 934
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVEMAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|229090605|ref|ZP_04221839.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-42]
gi|228692748|gb|EEL46473.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-42]
Length = 934
Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|198274686|ref|ZP_03207218.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
gi|198272133|gb|EDY96402.1| hypothetical protein BACPLE_00842 [Bacteroides plebeius DSM 17135]
Length = 258
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 69/205 (33%), Gaps = 41/205 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVF 59
+ N V +D ET G ++ DR + ++V + + P PE +
Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNE--EAKTLRINPEMHI---PETSTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + + D E ++ I + I G+N+ RFD F R D
Sbjct: 60 IHGI-HDEDVADCPTFKEVAKDIARDI--EGADIAGFNSNRFDVPVLVEEFLRAGIDIDL 116
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
+DV + KL+ L+ A G +
Sbjct: 117 TKRK-------FVDVQVIYH-------------------KLEQRTLSAAYKFYCGKNLED 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A+AD AT ++ + P +
Sbjct: 151 AHTAEADTRATYEVLKAQLDHYPDV 175
>gi|292898154|ref|YP_003537523.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
gi|291198002|emb|CBJ45104.1| oligoribonuclease [Erwinia amylovora ATCC 49946]
Length = 187
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N+ + D E G D DR + A + D + VF
Sbjct: 5 ANNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAEGPVF 46
>gi|197287169|ref|YP_002153041.1| oligoribonuclease [Proteus mirabilis HI4320]
gi|194684656|emb|CAR46589.1| oligoribonuclease [Proteus mirabilis HI4320]
Length = 181
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D Q +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATIVTDPQLNILAE 42
>gi|33151672|ref|NP_873025.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
gi|38372407|sp|Q7VNN8|ORN_HAEDU RecName: Full=Oligoribonuclease
gi|33147893|gb|AAP95414.1| oligoribonuclease [Haemophilus ducreyi 35000HP]
Length = 183
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 8/59 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYL 52
H + D E G D DR + A + D+ + K + +
Sbjct: 6 NQHLIWIDLEMTGLDPNQDRIIEIATIVTDKDLNILAKGPVLAVHQPNTLLSKMNEWCI 64
>gi|303258008|ref|ZP_07344017.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
1_1_47]
gi|330999422|ref|ZP_08323136.1| putative DNA polymerase III, epsilon subunit [Parasutterella
excrementihominis YIT 11859]
gi|302859351|gb|EFL82433.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
1_1_47]
gi|329574848|gb|EGG56407.1| putative DNA polymerase III, epsilon subunit [Parasutterella
excrementihominis YIT 11859]
Length = 196
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
+ D ET G A DR + + VD + +I+S F
Sbjct: 25 IFLDTETTGMSQATDRIVEVCAIEVDDDFNEIDSFHAF 62
>gi|228938753|ref|ZP_04101356.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228971635|ref|ZP_04132257.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228978244|ref|ZP_04138621.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis Bt407]
gi|228781261|gb|EEM29462.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis Bt407]
gi|228788048|gb|EEM36005.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228820928|gb|EEM66950.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326939259|gb|AEA15155.1| ATP-dependent helicase DinG [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 934
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|226326657|ref|ZP_03802175.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
gi|225204878|gb|EEG87232.1| hypothetical protein PROPEN_00510 [Proteus penneri ATCC 35198]
Length = 181
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D Q +
Sbjct: 6 NNLIWIDLEMTGLDPECDRIIEIATIVTDPQLNILAE 42
>gi|196039095|ref|ZP_03106402.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus NVH0597-99]
gi|196030240|gb|EDX68840.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus NVH0597-99]
Length = 934
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|118477094|ref|YP_894245.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus thuringiensis str. Al Hakam]
gi|196046614|ref|ZP_03113838.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus 03BB108]
gi|225863505|ref|YP_002748883.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus 03BB102]
gi|229183836|ref|ZP_04311053.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
6E1]
gi|118416319|gb|ABK84738.1| ATP-dependent DNA helicase [Bacillus thuringiensis str. Al Hakam]
gi|196022547|gb|EDX61230.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus 03BB108]
gi|225789838|gb|ACO30055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus 03BB102]
gi|228599685|gb|EEK57288.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus BGSC
6E1]
Length = 934
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|81248005|gb|ABB68713.1| conserved hypothetical protein [Shigella boydii Sb227]
Length = 204
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 29 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65
>gi|113968935|ref|YP_732728.1| oligoribonuclease [Shewanella sp. MR-4]
gi|114048927|ref|YP_739477.1| oligoribonuclease [Shewanella sp. MR-7]
gi|123130769|sp|Q0HMP6|ORN_SHESM RecName: Full=Oligoribonuclease
gi|123131054|sp|Q0HR35|ORN_SHESR RecName: Full=Oligoribonuclease
gi|113883619|gb|ABI37671.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-4]
gi|113890369|gb|ABI44420.1| Exonuclease, RNase T and DNA polymerase III [Shewanella sp. MR-7]
Length = 181
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 50/212 (23%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
N+ + D E G + +DR + A + D++ I V +D+ L A
Sbjct: 5 ANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVL----AAMDD 60
Query: 60 ----ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYS- 106
G + + V EA+ + F C N++ D +
Sbjct: 61 WNQKHHGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCG---NSVGQDRRFLN 117
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R + R D + + D+ V + +SP+ +
Sbjct: 118 RYM--RELEDYFHY------RNLDVSTVKELVKRWSPETMA------------------- 150
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G + N H A D+ ++A + R K K+
Sbjct: 151 -GFKKQNTHQALQDIQESIAELQYYRSKVFKI 181
>gi|297568933|ref|YP_003690277.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
AHT2]
gi|296924848|gb|ADH85658.1| DNA polymerase III, epsilon subunit [Desulfurivibrio alkaliphilus
AHT2]
Length = 238
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 26/198 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D E G + D V++ R + + T + KP+ LP ++ I I
Sbjct: 40 FVVFDTELTGLNRQRDEIVSIGAVKI-RNLQILVGETFHVYIKPSR-ALPK-DSTLIHRI 96
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ+ + + + + F S ++ + + D + R++
Sbjct: 97 TPQQIEQA----PQLATVLPDFISFCGQALLVGHYVGLDVAFLNRACRRHYGAVVS---- 148
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT---SFKLQDLALANGIEHVNAHDAKAD 180
N D + + + +QW D ++ L L+ + HDA D
Sbjct: 149 --NPCLDTMRLAQTY-----TEMQWQQYHDRFRMDATYSLAGLSQEYNLPDFTLHDAYED 201
Query: 181 VYAT----LALVWLIREK 194
T + L+ +R K
Sbjct: 202 ALQTAYLFVFLIKKMRAK 219
>gi|228926672|ref|ZP_04089741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228833048|gb|EEM78616.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 934
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|281419997|ref|ZP_06250996.1| exonuclease [Prevotella copri DSM 18205]
gi|281405797|gb|EFB36477.1| exonuclease [Prevotella copri DSM 18205]
Length = 287
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +++D ET G D+ DR Q + ++V E + + P + +P E V +
Sbjct: 5 LTKPLIVFDLETTGLDMIKDRIIQISYIKVMPD--GTEDRKNLYVNPCME-IPA-EVVAL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
TGI+ + +D + + + + F+ GYN+ FD F R D
Sbjct: 61 TGISNEDV-KDAPTFKQLAATLEKEFT--GCDFAGYNSNHFDVPMLAEEFLRAGID 113
>gi|332662172|ref|YP_004444960.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
hydrossis DSM 1100]
gi|332330986|gb|AEE48087.1| Exonuclease RNase T and DNA polymerase III [Haliscomenobacter
hydrossis DSM 1100]
Length = 194
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 42/207 (20%), Positives = 68/207 (32%), Gaps = 54/207 (26%)
Query: 5 FVIYDYETFGR----------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
+ D ET G R Q AG+ D + + + +P +P
Sbjct: 2 ILFLDTETTGLPLNWSAPISRVNNWPRMVQLAGLLYDEE-GTLLEQLNYLVRPEGYTIPA 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
V I GIT ++AL +GV A+ + +N+ FD ++R
Sbjct: 61 AV-VRIHGITTERALAEGVPVAQVLNDFRSILEKSKLLVA--HNVNFDHAIVGAEYHRYV 117
Query: 115 Y-DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGI--------------QWPSRDDGATSFK 159
D LL + + SP+ I +WP ++ +K
Sbjct: 118 KEDP-------------LLPIPKFCTMTSPEVIYHCALPANSPRGGYKWPKLEE--LHYK 162
Query: 160 L--QDLALANGIEHVNAHDAKADVYAT 184
L + + AHDA D+ AT
Sbjct: 163 LFKEGI--------KGAHDAMVDITAT 181
>gi|255534839|ref|YP_003095210.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
gi|255341035|gb|ACU07148.1| DNA Pol III Epsilon Chain [Flavobacteriaceae bacterium 3519-10]
Length = 254
Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 37/188 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITGI 63
I+D ET G +VA DR + + ++V+ S E + Y+P E+ I GI
Sbjct: 9 LCIFDLETTGVNVAKDRIVEISILKVNPD----GSRESKTWLVNPEMYIPK-ESTEIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ +++ E + ++ + + T + G+N+ RFD R D +
Sbjct: 64 S-DDDVKNSPKFKEIAPKVMEMIT--GTDLGGFNSNRFDVPLLAEELLRAGIDFDLTKFK 120
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI----EHVNAHDAKA 179
L+DV + P +L+ A E VNAH A+A
Sbjct: 121 -------LVDVQTIYHKMEPR-----------------NLSAAYNFYCKKELVNAHSAEA 156
Query: 180 DVYATLAL 187
DV AT +
Sbjct: 157 DVLATFEV 164
>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 1012
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 37/235 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D+ + V++ ++ + +P V +TGI+
Sbjct: 3 FDIETTGLSSRNDKITEIGAVKIKNGM-IVDRFSQLIN--PEKEIPQ-VVVDLTGISNAM 58
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN- 126
+ +E I +F+ ++ +N +FD + R + N N
Sbjct: 59 VENEPTIE----EVILKFYDFAKDAVLVAHNAKFDISFIR------------REYANNNL 102
Query: 127 -SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
+LD + A D F L L G+ V AH A D AT
Sbjct: 103 VFNHPILDTLVLARATMSD----------MKRFNLGTLCKNLGVSLVGAHRAVNDAEATA 152
Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT---PLVHVSGMFGASRSNT 237
+ + EK + E+ ++ NK + ID + + L+ V G
Sbjct: 153 EVFIKLIEKIKREEEFNFENLNKEIVN--IDSKRLFESSLLLLVQNEIGLKNLYM 205
>gi|228945241|ref|ZP_04107597.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228814476|gb|EEM60741.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|91079959|ref|XP_969470.1| PREDICTED: similar to three prime repair exonuclease 1 [Tribolium
castaneum]
gi|270003252|gb|EEZ99699.1| hypothetical protein TcasGA2_TC002459 [Tribolium castaneum]
Length = 319
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 25/180 (13%)
Query: 3 NHFVIYDYETFG---RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA----DDYLPDP 55
FV D ET G + R + V V ++ K + + P
Sbjct: 32 KTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMKMISP 91
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIF--Y 111
EA +TG++ ++ I ++ + C++ +N RFD R
Sbjct: 92 EATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAEVEKT 151
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-----QDLALA 166
RN D L+ R+I + ++ P G F+ + L+ A
Sbjct: 152 RNKLPEDIL-------CLDSLNAFRSIDTLEAEAVKQP--PKGEIPFEFNDGYDELLSQA 202
>gi|30261638|ref|NP_844015.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus anthracis str. Ames]
gi|47526838|ref|YP_018187.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus anthracis str. 'Ames Ancestor']
gi|49184469|ref|YP_027721.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus anthracis str. Sterne]
gi|165869397|ref|ZP_02214056.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0488]
gi|167639095|ref|ZP_02397368.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0193]
gi|170706543|ref|ZP_02897003.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0389]
gi|177650486|ref|ZP_02933453.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0174]
gi|190568647|ref|ZP_03021552.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis Tsiankovskii-I]
gi|227815611|ref|YP_002815620.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. CDC 684]
gi|229602233|ref|YP_002866045.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0248]
gi|254734478|ref|ZP_05192190.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus anthracis str. Western North America
USA6153]
gi|254755128|ref|ZP_05207162.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus anthracis str. Vollum]
gi|254759665|ref|ZP_05211689.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus anthracis str. Australia 94]
gi|30255866|gb|AAP25501.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. Ames]
gi|47501986|gb|AAT30662.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. 'Ames Ancestor']
gi|49178396|gb|AAT53772.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
anthracis str. Sterne]
gi|164714837|gb|EDR20355.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0488]
gi|167512885|gb|EDR88258.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0193]
gi|170128641|gb|EDS97508.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0389]
gi|172083630|gb|EDT68690.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0174]
gi|190560247|gb|EDV14227.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis Tsiankovskii-I]
gi|227006832|gb|ACP16575.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. CDC 684]
gi|229266641|gb|ACQ48278.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
anthracis str. A0248]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
Length = 1397
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 39/192 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ FV++D ET G + + + V+V + I+ F KP + +P+ + +T
Sbjct: 382 SATFVVFDLETTGLNKFKNEIIEIGAVKVKSG-KVIDEFSSF-VKPGES-IPN-KITELT 437
Query: 62 GITPQKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
GIT + R +E EF + ++ +N FD + + +
Sbjct: 438 GITNEMVSRAPDIEGVIGDFLEFID---------GSILVAHNA-DFDYGFLQVALKKTGQ 487
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
G+ + +LD + A PD KL LA + N H
Sbjct: 488 ---------GDISYPVLDTLTLSRALLPDLSN----------HKLNTLARHLNVRLDNHH 528
Query: 176 DAKADVYATLAL 187
A D AT +
Sbjct: 529 RAVEDARATSEI 540
>gi|116618479|ref|YP_818850.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097326|gb|ABJ62477.1| Rad3-related DNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 797
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 36/188 (19%)
Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQW----EKIESTEVFFCKPADDYLPDPE 56
+ FV+ D ET G V R Q + + ++ E F L D +
Sbjct: 4 NDTFVVVDLETTGHSVKKGGRIIQIG-----MTFIKKRQIVDHFESF---VNPGQLIDRQ 55
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+T I+ + E + Q NT II +N + FD Y + F R +
Sbjct: 56 IQQLTHIS--QKDVQNAPYFEEIAPLLQNLLQ-NTVIIAHN-VNFDYPYLNDEFERTGFP 111
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ + +D ++ P ++L DL I NAH
Sbjct: 112 LLKSA---------AIDTVQLAQILFPTA----------PGYRLLDLTTYLNITLKNAHR 152
Query: 177 AKADVYAT 184
A AD +AT
Sbjct: 153 ANADAHAT 160
>gi|228952021|ref|ZP_04114116.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228957917|ref|ZP_04119657.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228801833|gb|EEM48710.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228807553|gb|EEM54077.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|297538700|ref|YP_003674469.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp.
301]
gi|297258047|gb|ADI29892.1| Exonuclease RNase T and DNA polymerase III [Methylotenera sp.
301]
Length = 186
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G DR + A V D + + VF +D L
Sbjct: 11 NNLIWLDMEMSGLLPDSDRILELAAVVTDADLNVLGESPVFVIHQSDAVL 60
>gi|148225871|ref|NP_001088822.1| REX2, RNA exonuclease 2 homolog [Xenopus laevis]
gi|126631799|gb|AAI33811.1| LOC496097 protein [Xenopus laevis]
Length = 186
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 23/121 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD------ 54
M V D E G D+ D + A + D + + K D L D
Sbjct: 5 MGQRMVWVDLEMTGLDIEKDEIIEMACLITDSNLDILAEGPNLIIK-QPDELLDGMSDWC 63
Query: 55 ---------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
+AV + IT Q+A E EF I Q + P C + N++ D +
Sbjct: 64 KEHHGKSGLTQAVRESRITLQQA------EYEFLSFIRQH-TPPGVCPLAGNSVHADKKF 116
Query: 106 S 106
Sbjct: 117 L 117
>gi|156932395|ref|YP_001436311.1| oligoribonuclease [Cronobacter sakazakii ATCC BAA-894]
gi|156530649|gb|ABU75475.1| hypothetical protein ESA_00171 [Cronobacter sakazakii ATCC
BAA-894]
Length = 185
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 10 NNLIWIDLEMTGLDPRQDRIIEIATLVTDANLNILAE 46
>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 970
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|325298421|ref|YP_004258338.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
salanitronis DSM 18170]
gi|324317974|gb|ADY35865.1| Exonuclease RNase T and DNA polymerase III [Bacteroides
salanitronis DSM 18170]
Length = 258
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 45/205 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVF 59
+ N V +D ET G ++ DR + +++ + ++ P PE +
Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKIYPNGNE--ESKTMRINPEMHI---PETSTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I GI + V + ++I + + I G+N+ RFD F R D
Sbjct: 60 IHGI-----HDEDVADCPTFKQIAKELAKSIEGADIAGFNSNRFDVPVLVEEFLRAGIDI 114
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEH 171
S+ +DV + KL+ L+ A G
Sbjct: 115 DL-------SKRKFIDVQVIYH-------------------KLEQRTLSAAYKFYCGKNL 148
Query: 172 VNAHDAKADVYATLALVWLIREKKP 196
+AH A+AD AT ++ ++ P
Sbjct: 149 EDAHTAEADTRATYEVLKAQLDRYP 173
>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229126955|ref|ZP_04255966.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
BDRD-Cer4]
gi|228656555|gb|EEL12382.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
BDRD-Cer4]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
Length = 970
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|218230901|ref|YP_002366323.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus cereus B4264]
gi|228907275|ref|ZP_04071134.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis IBL 200]
gi|229069194|ref|ZP_04202485.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
F65185]
gi|218158858|gb|ACK58850.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus B4264]
gi|228713946|gb|EEL65830.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
F65185]
gi|228852329|gb|EEM97124.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis IBL 200]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus W]
gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus W]
gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0193]
gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0174]
gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
America USA6153]
gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0193]
gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0174]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH187]
gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
Hakam]
gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
Hakam]
Length = 972
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 473
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 474 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 525
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 526 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 570
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 571 ATGYLLVKMLKDVIEKGFEY 590
>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
[Bacillus anthracis str. A2012]
gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0488]
gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0465]
gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0389]
gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis Tsiankovskii-I]
gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus NVH0597-99]
gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH820]
gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. CDC 684]
gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0248]
gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. Ames]
gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. 'Ames Ancestor']
gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. Sterne]
gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0488]
gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0389]
gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0465]
gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis Tsiankovskii-I]
gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus NVH0597-99]
gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH820]
gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. CDC 684]
gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0248]
gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
str. CI]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|330995701|ref|ZP_08319599.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
gi|329574760|gb|EGG56321.1| exonuclease [Paraprevotella xylaniphila YIT 11841]
Length = 256
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 65/196 (33%), Gaps = 47/196 (23%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGIT 64
V +D ET G ++ DR + ++V + ++ P PE + I GI
Sbjct: 10 VFFDLETTGINITNDRIVELCYIKVYPNGNE--ESKSMRINPEMHI---PESSSAIHGI- 63
Query: 65 PQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ V + +++ + ++ G+N+ RFD F R D
Sbjct: 64 ----YDEDVADCPTFKQVAKDLANTIKGCDFAGFNSNRFDVPMLVEEFLRAGIDIDIRKR 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVNAHD 176
+DV + KL+ L+ A G + NAH
Sbjct: 120 K-------FIDVQNIYH-------------------KLERRTLSAAYKFYCGKDLENAHS 153
Query: 177 AKADVYATLA--LVWL 190
A AD AT + L
Sbjct: 154 ALADTRATYEVLMAQL 169
>gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247]
gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM
43247]
Length = 595
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 71/221 (32%), Gaps = 38/221 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V+ D ET G D A DR + V++ E + + P+ V +TG
Sbjct: 36 TTLVVVDLETTGSDPAGDRITEIGAVKIRGG-EVLGEFATL---VDPERSIPPQIVTLTG 91
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SYRWS 121
IT +E I F+ + ++ +N RFD + R R D + S
Sbjct: 92 ITHAMVSAAPRIEEVLPAFI--EFAR-GSILVAHNA-RFDMGFLRRNAQRLHLDFPFPLS 147
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
L V A + A + +L LA + H A D
Sbjct: 148 ---------LCTVTMARRILHRE---------EAPTVRLSALADLFDVSVRPTHRALDDA 189
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
AT+ +F +L + + + D+ P
Sbjct: 190 RATVE-----------VFHHLLERVGNQGVHSIRDLTEYLP 219
>gi|260599488|ref|YP_003212059.1| oligoribonuclease [Cronobacter turicensis z3032]
gi|260218665|emb|CBA34001.1| Oligoribonuclease [Cronobacter turicensis z3032]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPRQDRIIEIATLVTDANLNILAE 42
>gi|218896571|ref|YP_002444982.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus G9842]
gi|218545327|gb|ACK97721.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus G9842]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|206970727|ref|ZP_03231679.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus AH1134]
gi|229078824|ref|ZP_04211377.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock4-2]
gi|229178049|ref|ZP_04305421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
172560W]
gi|206734363|gb|EDZ51533.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus AH1134]
gi|228605537|gb|EEK62986.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
172560W]
gi|228704506|gb|EEL56939.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock4-2]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0442]
gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
anthracis str. A0442]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINIGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|167625547|ref|YP_001675841.1| oligoribonuclease [Shewanella halifaxensis HAW-EB4]
gi|167355569|gb|ABZ78182.1| Exonuclease RNase T and DNA polymerase III [Shewanella
halifaxensis HAW-EB4]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
N+ + D E G D A+D+ + A + D++ I
Sbjct: 6 NNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNII 40
>gi|157368671|ref|YP_001476660.1| oligoribonuclease [Serratia proteamaculans 568]
gi|166918640|sp|A8G8U2|ORN_SERP5 RecName: Full=Oligoribonuclease
gi|157320435|gb|ABV39532.1| Exonuclease RNase T and DNA polymerase III [Serratia
proteamaculans 568]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|259046854|ref|ZP_05737255.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
adiacens ATCC 49175]
gi|259036477|gb|EEW37732.1| DnaQ family exonuclease/DinG family helicase [Granulicatella
adiacens ATCC 49175]
Length = 875
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 70/224 (31%), Gaps = 44/224 (19%)
Query: 1 MTNHFVIYDYETFGRDVAL---DRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPE 56
M + + D ET G DR QF D + I P P
Sbjct: 1 MHRKYAVIDLETTG--PKYEQGDRIFQFGCTLITDHK---IVEHITLNINPEQSI---PF 52
Query: 57 AV-FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ +TG+T + + E + I+ T + +N+ FD +
Sbjct: 53 EIQLLTGVTNADVEKAPYFD-EVAMNIYNLLEG-RTLVA--HNVGFDGPFIITALKEALG 108
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D ++ P I S++L DL I H H
Sbjct: 109 IELE---------VPFIDTVQLAQICYPSAI----------SYRLSDLTNMLKIPHTQVH 149
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
A +D AT L +++EK +K L +L++ N
Sbjct: 150 TAGSDARATAQLFLILQEK--------IRSFSKVTLEQLVEFSN 185
>gi|150401941|ref|YP_001329235.1| exonuclease RNase T and DNA polymerase III [Methanococcus
maripaludis C7]
gi|150032971|gb|ABR65084.1| Exonuclease RNase T and DNA polymerase III [Methanococcus
maripaludis C7]
Length = 189
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 20/182 (10%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V D ET G + + AQ + + D I+ E + K +A + G++
Sbjct: 3 VFLDTETTGLEPG--QIAQISYIISDDDLN-IQKAENIYFKVNSMET---KAQSVHGLSI 56
Query: 66 Q--KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + L DG + + +I I+ +N+ FD + + F R + +
Sbjct: 57 EKLELLSDGKSFTDHANQILDDIDQK---ILICHNVPFDYKFLNSEFVRCGIEYDPKKFC 113
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRD---DGATSFKLQDLALANGI--EHVNAHDAK 178
N +L + P G +WP + D + K + L A + HD++
Sbjct: 114 TMNHYTNLCGIPNPY---RP-GYKWPRLEETLDFLSIEKSEVLKNALNLFGNTTGFHDSR 169
Query: 179 AD 180
D
Sbjct: 170 FD 171
>gi|91213714|ref|YP_543700.1| oligoribonuclease [Escherichia coli UTI89]
gi|237703830|ref|ZP_04534311.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
gi|254037177|ref|ZP_04871254.1| oligoribonuclease [Escherichia sp. 1_1_43]
gi|332280947|ref|ZP_08393360.1| oligoribonuclease [Shigella sp. D9]
gi|26111489|gb|AAN83671.1|AE016771_182 Oligoribonuclease [Escherichia coli CFT073]
gi|91075288|gb|ABE10169.1| oligoribonuclease [Escherichia coli UTI89]
gi|226840283|gb|EEH72285.1| oligoribonuclease [Escherichia sp. 1_1_43]
gi|226901742|gb|EEH88001.1| oligoribonuclease [Escherichia sp. 3_2_53FAA]
gi|332103299|gb|EGJ06645.1| oligoribonuclease [Shigella sp. D9]
Length = 220
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 45 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 81
>gi|313668102|ref|YP_004048386.1| DNA polymerase III, epsilon chain [Neisseria lactamica ST-640]
gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06]
Length = 244
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T Q AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|292489630|ref|YP_003532520.1| oligoribonuclease [Erwinia amylovora CFBP1430]
gi|291555067|emb|CBA23161.1| oligoribonuclease [Erwinia amylovora CFBP1430]
gi|312173806|emb|CBX82060.1| oligoribonuclease [Erwinia amylovora ATCC BAA-2158]
Length = 193
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N+ + D E G D DR + A + D + VF
Sbjct: 11 ANNLIWIDLEMTGLDPERDRIIEIATLVTDADLNILAEGPVF 52
>gi|256027838|ref|ZP_05441672.1| exonuclease, RNase T and DNA polymerase III [Fusobacterium sp. D11]
gi|289765790|ref|ZP_06525168.1| exonuclease [Fusobacterium sp. D11]
gi|289717345|gb|EFD81357.1| exonuclease [Fusobacterium sp. D11]
Length = 191
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
N + D ET G + Q +G +R+D+ + +E F+ KP ++ + +A+ +
Sbjct: 2 NKIIFIDTETGGVNPEKSALIQLSGIIRIDK--KDVEKF-NFYIKPFENSEVNEKALEVQ 58
Query: 62 GITPQKALRDGVVE-----AEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112
G T + + +E +F + ++ + + GYN +RFD + +F R
Sbjct: 59 GRTLDELKAEKYIEEKEVYKQFINLLDKYIDKYDKTDKFIVAGYN-VRFDVDILKALFQR 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ +++ +S+ + +LD + +I GI P ++ KL+ GIE +
Sbjct: 118 HG-NNFLFSYLDS----SMLDPLYSIRLLQIAGI-LPVLENN----KLETWCKHFGIE-L 166
Query: 173 NAHDAKADVYATLAL-VWLI 191
AHD+ D+ AT L LI
Sbjct: 167 KAHDSLEDIVATKKLIGKLI 186
>gi|229109097|ref|ZP_04238697.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock1-15]
gi|228674375|gb|EEL29619.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock1-15]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R + Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQVGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
Length = 1433
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLID--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|32455548|ref|NP_862304.1| Ycg4D [Corynebacterium glutamicum]
gi|9836715|gb|AAG00279.1|AF164956_11 Ycg4D [Corynebacterium glutamicum]
Length = 296
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 63/195 (32%), Gaps = 34/195 (17%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEAVFITGIT 64
D ET G D + + A I +F + + A + GI+
Sbjct: 118 DTETTGL--GYDAQVIEIA----------IADASGKVLFDTRIKPTVAIEAAAQEVHGIS 165
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P AL + E + RI S T II N FD W +
Sbjct: 166 PD-ALINAPSWPEVANRIEALLSG-RTVII--FNASFDSRLIAQT---AGAFGLETGWWS 218
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYA 183
+ + + + Y + G+ S L D A G+ AH A AD A
Sbjct: 219 TCTTRCAMHLAASAYG--------STNPYGSIS--LADATSAAGVPWTGAAHSAAADTLA 268
Query: 184 TLALVWLIREKKPKL 198
T+ LV I KP L
Sbjct: 269 TVELVKSIARVKPAL 283
>gi|300957822|ref|ZP_07170001.1| exonuclease [Escherichia coli MS 175-1]
gi|300315482|gb|EFJ65266.1| exonuclease [Escherichia coli MS 175-1]
Length = 199
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60
>gi|116873334|ref|YP_850115.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742212|emb|CAK21336.1| ATP-dependent helicase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 928
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYSTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI P+ + E + + I T + +N + FD + R
Sbjct: 60 GIAPKDVKNAPLFE-DVAPIIASLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ G+ H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFGLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|296502210|ref|YP_003663910.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
gi|296323262|gb|ADH06190.1| ATP-dependent helicase DinG [Bacillus thuringiensis BMB171]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|228900222|ref|ZP_04064453.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis IBL 4222]
gi|228859391|gb|EEN03820.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis IBL 4222]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|228932930|ref|ZP_04095795.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228826733|gb|EEM72502.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVGELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|229189723|ref|ZP_04316737.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
10876]
gi|228593772|gb|EEK51577.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
10876]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|324015053|gb|EGB84272.1| exonuclease [Escherichia coli MS 60-1]
Length = 199
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60
>gi|301023446|ref|ZP_07187227.1| exonuclease [Escherichia coli MS 69-1]
gi|300396998|gb|EFJ80536.1| exonuclease [Escherichia coli MS 69-1]
Length = 199
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60
>gi|262045407|ref|ZP_06018430.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330003307|ref|ZP_08304578.1| oligoribonuclease [Klebsiella sp. MS 92-3]
gi|259037236|gb|EEW38484.1| oligoribonuclease [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328537018|gb|EGF63306.1| oligoribonuclease [Klebsiella sp. MS 92-3]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|208806770|ref|ZP_03249107.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
gi|208726571|gb|EDZ76172.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4206]
Length = 188
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|229144240|ref|ZP_04272654.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
BDRD-ST24]
gi|228639248|gb|EEK95664.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
BDRD-ST24]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|110346113|gb|ABG72350.1| oligoribonuclease [Escherichia coli 536]
Length = 229
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 54 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 90
>gi|38704238|ref|NP_313168.2| oligoribonuclease [Escherichia coli O157:H7 str. Sakai]
gi|161367457|ref|NP_290795.2| oligoribonuclease [Escherichia coli O157:H7 EDL933]
gi|168747976|ref|ZP_02772998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
gi|168755351|ref|ZP_02780358.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
gi|168766441|ref|ZP_02791448.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
gi|168774540|ref|ZP_02799547.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
gi|168780594|ref|ZP_02805601.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
gi|168784799|ref|ZP_02809806.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
gi|168802329|ref|ZP_02827336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
gi|195935954|ref|ZP_03081336.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4024]
gi|208812669|ref|ZP_03253998.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
gi|208819030|ref|ZP_03259350.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
gi|209398620|ref|YP_002273707.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
gi|217325417|ref|ZP_03441501.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
gi|254796184|ref|YP_003081021.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
gi|261225285|ref|ZP_05939566.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK2000]
gi|261255463|ref|ZP_05947996.1| oligoribonuclease [Escherichia coli O157:H7 str. FRIK966]
gi|291285577|ref|YP_003502395.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
gi|20138827|sp|Q8XDP0|ORN_ECO57 RecName: Full=Oligoribonuclease
gi|187769887|gb|EDU33731.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4196]
gi|188017565|gb|EDU55687.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4113]
gi|189001658|gb|EDU70644.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4076]
gi|189357409|gb|EDU75828.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4401]
gi|189363946|gb|EDU82365.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4486]
gi|189374804|gb|EDU93220.1| oligoribonuclease [Escherichia coli O157:H7 str. EC869]
gi|189375661|gb|EDU94077.1| oligoribonuclease [Escherichia coli O157:H7 str. EC508]
gi|208733946|gb|EDZ82633.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4045]
gi|208739153|gb|EDZ86835.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4042]
gi|209160020|gb|ACI37453.1| oligoribonuclease [Escherichia coli O157:H7 str. EC4115]
gi|217321638|gb|EEC30062.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14588]
gi|254595584|gb|ACT74945.1| oligoribonuclease [Escherichia coli O157:H7 str. TW14359]
gi|290765450|gb|ADD59411.1| Oligoribonuclease [Escherichia coli O55:H7 str. CB9615]
gi|320190703|gb|EFW65353.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
EC1212]
gi|320638923|gb|EFX08569.1| oligoribonuclease [Escherichia coli O157:H7 str. G5101]
gi|320644292|gb|EFX13357.1| oligoribonuclease [Escherichia coli O157:H- str. 493-89]
gi|320649610|gb|EFX18134.1| oligoribonuclease [Escherichia coli O157:H- str. H 2687]
gi|320655006|gb|EFX22967.1| oligoribonuclease [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660513|gb|EFX27974.1| oligoribonuclease [Escherichia coli O55:H7 str. USDA 5905]
gi|320665782|gb|EFX32819.1| oligoribonuclease [Escherichia coli O157:H7 str. LSU-61]
gi|326341785|gb|EGD65568.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
1125]
gi|326346640|gb|EGD70374.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli O157:H7 str.
1044]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|300940651|ref|ZP_07155212.1| exonuclease [Escherichia coli MS 21-1]
gi|300454539|gb|EFK18032.1| exonuclease [Escherichia coli MS 21-1]
Length = 199
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60
>gi|228920352|ref|ZP_04083698.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228839274|gb|EEM84569.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|227886794|ref|ZP_04004599.1| exoribonuclease II [Escherichia coli 83972]
gi|300816535|ref|ZP_07096756.1| exonuclease [Escherichia coli MS 107-1]
gi|300821256|ref|ZP_07101404.1| exonuclease [Escherichia coli MS 119-7]
gi|300899700|ref|ZP_07117927.1| exonuclease [Escherichia coli MS 198-1]
gi|300905993|ref|ZP_07123717.1| exonuclease [Escherichia coli MS 84-1]
gi|300922430|ref|ZP_07138550.1| exonuclease [Escherichia coli MS 182-1]
gi|300929272|ref|ZP_07144748.1| exonuclease [Escherichia coli MS 187-1]
gi|300974947|ref|ZP_07172786.1| exonuclease [Escherichia coli MS 45-1]
gi|300975250|ref|ZP_07172914.1| exonuclease [Escherichia coli MS 200-1]
gi|301047612|ref|ZP_07194678.1| exonuclease [Escherichia coli MS 185-1]
gi|301302580|ref|ZP_07208710.1| exonuclease [Escherichia coli MS 124-1]
gi|301325927|ref|ZP_07219348.1| exonuclease [Escherichia coli MS 78-1]
gi|301646609|ref|ZP_07246475.1| exonuclease [Escherichia coli MS 146-1]
gi|309796975|ref|ZP_07691375.1| exonuclease [Escherichia coli MS 145-7]
gi|227836136|gb|EEJ46602.1| exoribonuclease II [Escherichia coli 83972]
gi|281181261|dbj|BAI57591.1| oligoribonuclease [Escherichia coli SE15]
gi|300300491|gb|EFJ56876.1| exonuclease [Escherichia coli MS 185-1]
gi|300308749|gb|EFJ63269.1| exonuclease [Escherichia coli MS 200-1]
gi|300356743|gb|EFJ72613.1| exonuclease [Escherichia coli MS 198-1]
gi|300402160|gb|EFJ85698.1| exonuclease [Escherichia coli MS 84-1]
gi|300410435|gb|EFJ93973.1| exonuclease [Escherichia coli MS 45-1]
gi|300421249|gb|EFK04560.1| exonuclease [Escherichia coli MS 182-1]
gi|300462765|gb|EFK26258.1| exonuclease [Escherichia coli MS 187-1]
gi|300526145|gb|EFK47214.1| exonuclease [Escherichia coli MS 119-7]
gi|300530765|gb|EFK51827.1| exonuclease [Escherichia coli MS 107-1]
gi|300842105|gb|EFK69865.1| exonuclease [Escherichia coli MS 124-1]
gi|300847280|gb|EFK75040.1| exonuclease [Escherichia coli MS 78-1]
gi|301075156|gb|EFK89962.1| exonuclease [Escherichia coli MS 146-1]
gi|308119388|gb|EFO56650.1| exonuclease [Escherichia coli MS 145-7]
gi|315255507|gb|EFU35475.1| exonuclease [Escherichia coli MS 85-1]
gi|315288511|gb|EFU47909.1| exonuclease [Escherichia coli MS 110-3]
gi|315294059|gb|EFU53411.1| exonuclease [Escherichia coli MS 153-1]
gi|315297605|gb|EFU56882.1| exonuclease [Escherichia coli MS 16-3]
gi|324008605|gb|EGB77824.1| exonuclease [Escherichia coli MS 57-2]
gi|324019342|gb|EGB88561.1| exonuclease [Escherichia coli MS 117-3]
Length = 199
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60
>gi|75760399|ref|ZP_00740443.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492110|gb|EAO55282.1| ATP-dependent helicase, DinG family [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 934
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|297621916|ref|YP_003710053.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
gi|297377217|gb|ADI39047.1| DNA polymerase III epsilon chain [Waddlia chondrophila WSU 86-1044]
Length = 249
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 44/188 (23%), Positives = 66/188 (35%), Gaps = 28/188 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGI 63
FV D ET G D DR + A V + EK+++ E P D PE ++ I I
Sbjct: 9 FVCLDCETTGLDPKEDRVIEVACVAFTLE-EKLDAFETLI-DPERDI---PETSIAIHHI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T QK + E ++ F + I+G+ I+FD + R
Sbjct: 64 T-QKMVAGKPKVKEVLPKVLDFVG--SHIIVGHG-IQFDIEAISHSCDRAGISKNLR--- 116
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N D L + R + L+ L IE AH A +DV
Sbjct: 117 -DNPFIDTLRMARLY--------------GESPINSLEHLRKHFNIESEIAHRAMSDVMV 161
Query: 184 TLALVWLI 191
+ + +
Sbjct: 162 NIEVFKQL 169
>gi|290477090|ref|YP_003470002.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
gi|289176435|emb|CBJ83244.1| oligoribonuclease [Xenorhabdus bovienii SS-2004]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G + DR + A + D + + V D+ L
Sbjct: 6 NNLIWIDLEMTGLEPERDRIIEIATIVTDSELNILAEGPVIAVYQPDEQL 55
>gi|237729098|ref|ZP_04559579.1| oligoribonuclease [Citrobacter sp. 30_2]
gi|226908827|gb|EEH94745.1| oligoribonuclease [Citrobacter sp. 30_2]
Length = 185
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 46
>gi|206579385|ref|YP_002240881.1| oligoribonuclease [Klebsiella pneumoniae 342]
gi|288937537|ref|YP_003441596.1| exonuclease RNase T and DNA polymerase III [Klebsiella variicola
At-22]
gi|206568443|gb|ACI10219.1| oligoribonuclease [Klebsiella pneumoniae 342]
gi|288892246|gb|ADC60564.1| Exonuclease RNase T and DNA polymerase III [Klebsiella variicola
At-22]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|152973034|ref|YP_001338180.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|166216264|sp|A6TH79|ORN_KLEP7 RecName: Full=Oligoribonuclease
gi|150957883|gb|ABR79913.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|114321417|ref|YP_743100.1| ribonuclease T [Alkalilimnicola ehrlichii MLHE-1]
gi|114227811|gb|ABI57610.1| RNAse T [Alkalilimnicola ehrlichii MLHE-1]
Length = 216
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 62/196 (31%), Gaps = 42/196 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFITGITP 65
D ET G + A D Q A V + KP + DP+A+ + GI P
Sbjct: 28 DVETGGLNAATDALLQIAAVVLRMDENGRLYPAATHTCHVKPFEGANIDPKALELNGIDP 87
Query: 66 QKALRDGVVEAEFSRR----IHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSY 118
LR + E E ++ I Q +IG+N+ FD + R
Sbjct: 88 DHPLRMALPEDEALKKVFRPIRQEVRQTGCNRAVLIGHNSF-FDLGFLNAAVQRCG---I 143
Query: 119 RWSWDNGNSRWDLLDVMRAIY-------AFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ + + + +D + Y A G +W DG
Sbjct: 144 KRNPFHPFTSFDTATLAGLAYGQTVLAKALVASGEEW----DGK---------------- 183
Query: 172 VNAHDAKADVYATLAL 187
AH A D T L
Sbjct: 184 -AAHSAIYDAEKTADL 198
>gi|110597891|ref|ZP_01386173.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
gi|110340468|gb|EAT58954.1| Exonuclease [Chlorobium ferrooxidans DSM 13031]
Length = 189
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 27/191 (14%)
Query: 5 FVIYDYETFGR-----DVALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++ +D E+ G D R Q A + D + S F +P +P
Sbjct: 2 YLFFDTESTGLPRNWKAPVTDLGNWLRLVQLAYLSFDGVGNQTGS-GNFIVRPEGFSIP- 59
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
PEA I GI+ +AL +G+ + + +N+ FD+ F R
Sbjct: 60 PEAAAIHGISTAQALAEGLELKRVMEEFYAEVERAEWLVA--HNMSFDEKILGAEFLRLG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-GIEHVN 173
+ + + + + + + G +WP KL +L +
Sbjct: 118 MPNILLAKKKICT---MQESVDFCAIKNSYGNKWP---------KLSELHQKLFNCDFQE 165
Query: 174 AHDAKADVYAT 184
+H+A DV T
Sbjct: 166 SHNASVDVAVT 176
>gi|212633655|ref|YP_002310180.1| oligoribonuclease [Shewanella piezotolerans WP3]
gi|212555139|gb|ACJ27593.1| Exonuclease [Shewanella piezotolerans WP3]
Length = 181
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
N+ + D E G + A+DR + A + D++ I
Sbjct: 6 NNLIWVDLEMTGLEPAVDRIIEIATIVTDKELNII 40
>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 1369
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 46/194 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPEA 57
FV++D ET G DR + V+V+ ++ ++ + E+ + D
Sbjct: 351 TSFVVFDLETTGLSKYKDRITEIGAVKVENGKITEEYNQLVNPEMVISEKITD------- 403
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN-- 113
ITGIT + + + F ++ ++G N FD + + +R
Sbjct: 404 --ITGITNEMVEDCPK-----IDEVMKDFLKFCGDSILVG-QNTDFDVGFIKENCFRMEI 455
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
++ LD + A D F L +A I N
Sbjct: 456 EFNPLY------------LDTLPMARALFSD----------MKKFSLDKIARKLEIPAFN 493
Query: 174 AHDAKADVYATLAL 187
H A D AT +
Sbjct: 494 HHRASDDARATAQI 507
>gi|257468536|ref|ZP_05632630.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
ATCC 49185]
gi|317062795|ref|ZP_07927280.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
gi|313688471|gb|EFS25306.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
Length = 190
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ D ET G + Q +G+ R+D+ + +E FF KP + + +A+ + G
Sbjct: 3 ILFIDTETGGLNPKESALIQLSGIVRIDK--KDVEEF-NFFIKPFAESEVNAKALEVQGR 59
Query: 64 TPQKA-LRDGVVEAE--------FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
T ++ E E R I ++ + GYN ++FD ++ F RN
Sbjct: 60 TEKELETEKYRPEKEVYTDFKKILDRYIDKYDKTDKFIVAGYN-VKFDIDMLQSFFKRNG 118
Query: 115 YDSYRWSWDNGNSRWDLLD---VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
D++ +S+ + S D L +++ P + KL+ GI
Sbjct: 119 -DNFLFSYISS-SVLDPLPCIGMLQLCEVL-------PELKNN----KLETWCEYFGI-G 164
Query: 172 VNAHDAKADVYATLAL----VWLIRE 193
AHD+ D+ AT L LIR+
Sbjct: 165 FKAHDSLEDIKATKELIFKIAKLIRK 190
>gi|262199242|ref|YP_003270451.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262082589|gb|ACY18558.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 308
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPA----QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
T +++D ET G D D+ QF D ++ + D +P A
Sbjct: 3 TGELLVFDVETTGTDRRRDQIIELCVQFG--LGDDAPNRVW-------RIRPDVAIEPAA 53
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
+ GI+ E + + + F+ T ++GYN + FD
Sbjct: 54 QEVHGISMDDLAECPRFP-EVADELRELFA-SATVLVGYN-VSFD 95
>gi|146302714|ref|YP_001197305.1| exonuclease, RNase T and DNA polymerase III [Flavobacterium
johnsoniae UW101]
gi|146157132|gb|ABQ07986.1| Exonuclease, RNase T and DNA polymerase III [Flavobacterium
johnsoniae UW101]
Length = 256
Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 43/202 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
+D ET G D+ DR + + +V + ++ + P +P P+ + GI
Sbjct: 9 ICFFDLETTGIDIGKDRIVEISIFKVFPNGN--KESKTWLVNPT---IPIPPQTTAVHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T +K + AE + +H + + G+N+ RFD R D
Sbjct: 64 TDEKVANEPTF-AELAPLVHNMIKDSD--LAGFNSDRFDIPLLAEELLRAGVD------- 113
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALAN----GIEHVNAHD 176
+D+ + + D T F K+++ L+ A G NAH
Sbjct: 114 -----FDMKNKV---------------SVDVQTIFHKMEERTLSAALKFYCGKSLDNAHS 153
Query: 177 AKADVYATLALVWLIREKKPKL 198
A+AD AT ++ ++ P+L
Sbjct: 154 AEADTMATYEILKAQLDRYPEL 175
>gi|229149839|ref|ZP_04278067.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
m1550]
gi|228633520|gb|EEK90121.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
m1550]
Length = 934
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHNQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|283834783|ref|ZP_06354524.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
gi|291069029|gb|EFE07138.1| oligoribonuclease [Citrobacter youngae ATCC 29220]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|300087648|ref|YP_003758170.1| DNA polymerase III subunit epsilon [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527381|gb|ADJ25849.1| DNA polymerase III, epsilon subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 260
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGI 63
V +D ET G + DR + + + E + D +P PE A I GI
Sbjct: 10 LVFFDLETTGLNPLKDRIVEI----TLVKLLPDGTEESR-SRLIDPGIPIPETATAIHGI 64
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + RI + F + G+N +FD F R D + +
Sbjct: 65 TDDRVAGQPS-----FNRIAKSFRDFLEGCDLCGFNIKKFDIPMLEAEFRRAGVD-FSRA 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQ 147
++D + F P G++
Sbjct: 119 GRR------IIDTQVIFHKFHPRGLE 138
>gi|46371957|gb|AAS90610.1| conserved hypothetical protein [uncultured soil bacterium]
Length = 195
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 47/205 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGV----RVDRQWEKIESTEVFFCKPADDYLPDPE 56
M FV+ D ET G D Q + R + +P +
Sbjct: 22 MHGDFVVLDTETTGLGPT-DEVVQIGIIDSKGRT--VLNTMVRPT----RPVPSVV---- 70
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I G+T +K L + ++ + + +I YN + FD
Sbjct: 71 -TRIHGLTNEK-LAEASPFSDLYVSLSSILA--GVTVIAYN-MDFDWRMLVQSAGLYGLP 125
Query: 117 SYRW--------SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
++R ++ G+ +DL A + KL +
Sbjct: 126 AFRTGDRQCAMKAYAQGHGMFDLKRRTYAYH-------------------KLGEACRHQK 166
Query: 169 IEHVNAHDAKADVYATLALVWLIRE 193
I V AHDA +D TLALV + E
Sbjct: 167 IPVVQAHDALSDARMTLALVRKMAE 191
>gi|238750063|ref|ZP_04611566.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
gi|238711607|gb|EEQ03822.1| Oligoribonuclease [Yersinia rohdei ATCC 43380]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPQRDRIIEIATLVTDANLNILAE 42
>gi|71907264|ref|YP_284851.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
gi|71846885|gb|AAZ46381.1| DNA polymerase III, epsilon subunit [Dechloromonas aromatica RCB]
Length = 721
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 44/199 (22%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQ-------WEKIESTEVFFCKPADDYLP-D 54
+ ++D ET G + + D Q R+ + +I E +P
Sbjct: 530 TYTVFDTETTGLEPSNGDEIIQIGAARIVNNRLLRQETFNQIVDPE----------IPLK 579
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
P ++ I GIT + + G + F +T +I +N FD R + +
Sbjct: 580 PASIPIHGIT--EDMVRGQPNIDVVLPAFHEFC-EDTVLIAHNA-AFD---MRFLQLKEE 632
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ R++ +LD + P+ S KL + GI
Sbjct: 633 RTNIRFTQP-------VLDTLLLSAVVHPN----------QESHKLDVILERLGITIGKR 675
Query: 175 HDAKADVYATLAL-VWLIR 192
H+A D AT + + L++
Sbjct: 676 HNALEDALATGEVFLKLVK 694
>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
Length = 1443
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G A D + A V++ + + I+ E F + + +TGI
Sbjct: 427 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGQVIDKYESFA---NPHHPLSATTIELTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T VE + + H F I+ +N FD F Y +
Sbjct: 483 TDDMVRHAPEVE-QVIKEFHAFI---GDGIVVAHNASFD-----IGFLYTGYKKFGLEG- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ ++D + P + +L L IE H A D A
Sbjct: 533 ---TTHPVIDTLELARLLYPT----------MKNHRLNTLCKKFNIELTQHHRAIYDTEA 579
Query: 184 T-LALVWLIREK 194
T L+ L+++
Sbjct: 580 TGYLLLQLLKDA 591
>gi|212712065|ref|ZP_03320193.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
30120]
gi|212685587|gb|EEB45115.1| hypothetical protein PROVALCAL_03142 [Providencia alcalifaciens DSM
30120]
Length = 214
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 60/190 (31%), Gaps = 36/190 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + W I+ T F +P + +P A+ TGI P
Sbjct: 23 DVETGGFNPKTDGLLEIAAITLKMDKDGWLAIDETLHFHVEPFEGANLEPSALEFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSV--PNT----CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + NT I+ +N FD + R+ RN
Sbjct: 83 TNPLRGAVSEYDALHAIFKTIRKGMKNTDCNRAIMVAHNANFDHSFVMNAAERSGLKRNP 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + DG A
Sbjct: 143 FHPFATF-----DTAALSGLVFGQTILAKACVTAGIPFDGK-----------------QA 180
Query: 175 HDAKADVYAT 184
H A D T
Sbjct: 181 HGALYDTNRT 190
>gi|146276555|ref|YP_001166714.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
17025]
gi|145554796|gb|ABP69409.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
17025]
Length = 695
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 20/113 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGV------RVDRQ-WEKIESTEVFFCKPADDYLPDPE 56
+V++D ET G + D Q A V RV+ + ++ + + +P P
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRVEAEVFDTLVNPR----RPIP-----PS 545
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+ + GIT + D E R+ H+F ++ +N FD + R
Sbjct: 546 STEVHGIT-DAMVADAPDMTEVGRQFHKF--AEGAVLVAHNA-PFDMEFLRRA 594
>gi|283786843|ref|YP_003366708.1| oligoribonuclease [Citrobacter rodentium ICC168]
gi|282950297|emb|CBG89944.1| oligoribonuclease [Citrobacter rodentium ICC168]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|326803711|ref|YP_004321529.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651377|gb|AEA01560.1| exonuclease DnaQ family/helicase DinG family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 890
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 78/225 (34%), Gaps = 49/225 (21%)
Query: 1 MTNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M + + D ET G DR Q V ++ Q +KI + +P +P P+ +
Sbjct: 1 MPVKYAVVDLETTGTKYNRGDRIIQIGVVFLEGQ-KKIGEFKSNI-QPL---IPVPKNIS 55
Query: 60 -ITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+TGI + + E + +++ C+ +NI FD + F
Sbjct: 56 DLTGIQTEDLRDAPLFEDIAPDLFQQLQD-------CVFVAHNINFDYKFLSASFEGVGL 108
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ +D + I P S+KL D +L +GI V AH
Sbjct: 109 PALDLEG---------IDTVELIRVLYPQA----------ASYKLGDFSLDHGINLVKAH 149
Query: 176 DAKADVYATLALV------------WLIREKKPKLFEYLYDYRNK 208
A D AT L+ L + +P L ++ K
Sbjct: 150 TAIEDARATAQLLVQVMDKVASLPESLYKAMQPWL-KFFIRQSGK 193
>gi|320539682|ref|ZP_08039346.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
gi|320030294|gb|EFW12309.1| putative oligoribonuclease [Serratia symbiotica str. Tucson]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G D DR + A + D +
Sbjct: 6 SNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|261416032|ref|YP_003249715.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261372488|gb|ACX75233.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326359|gb|ADL25560.1| putative DnaQ family exonuclease/DinG family helicase [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 905
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 46/211 (21%), Positives = 68/211 (32%), Gaps = 44/211 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
FV D ET G D D + A VR + K D+L P AV
Sbjct: 5 PAFVALDLETTGLDFEKDEIIEVALVRFEN-----GEP-----KENLDFLVKPSAVELRP 54
Query: 60 ----ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+TGI+ D ++F+ Q S I +N FD + + F +
Sbjct: 55 FIETLTGIS----KADLESASDFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGI 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ WD L + R + P+ +L L IE AH
Sbjct: 111 SYDSHVF------WDSLTLSRIAFQDVPNH-------------RLDTLVQELNIERSRAH 151
Query: 176 DAKADVYAT----LALVWLIREKKPKLFEYL 202
A D A + + I P +++ L
Sbjct: 152 RALPDADACGRLFVKALEKISTMDPWIYDAL 182
>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus
kaustophilus HTA426]
Length = 1444
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 79/231 (34%), Gaps = 41/231 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+V++D ET G + + A V+V + E I+ + F P P +V
Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRF-MSFANPG-----HPLSVTTME 479
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT + ++D E R F + +N FD + R
Sbjct: 480 LTGIT-DEMVKDAPKPDEVLAR---FVDWAGDATLVAHNASFDIGFLNTGLARMGRGKIA 535
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N ++D + PD + +L L IE H A
Sbjct: 536 ----NP-----VIDTLELARFLYPDL----------KNHRLNTLCKKFDIELTQHHRAIY 576
Query: 180 DVYATLA-LVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
D AT L+ L++E + + LF + R ++ + P HV+
Sbjct: 577 DAEATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRL----ARPF-HVT 622
>gi|290512276|ref|ZP_06551643.1| oligoribonuclease [Klebsiella sp. 1_1_55]
gi|289775271|gb|EFD83272.1| oligoribonuclease [Klebsiella sp. 1_1_55]
Length = 199
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60
>gi|302533422|ref|ZP_07285764.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
gi|302442317|gb|EFL14133.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
Length = 241
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 58/201 (28%), Gaps = 40/201 (19%)
Query: 8 YDYETFGRDVALDRPA-------QFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+D ET G DV DR + AG P A +
Sbjct: 12 FDTETTGVDVEQDRIVSAALVVQECAG----------GRVRSTRWLVNPGVPVPPGATEV 61
Query: 61 TGITPQKALRDGVVEAEFSRRI-----HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
G+T + R+G A I Q + ++ N FD R+
Sbjct: 62 HGLTDEHLQRNGRWPAPVVEEIARALGEQRMAGRPVVVM---NAPFDLTLLDRELRRHRA 118
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGATSFKLQDLALANGIEHVN 173
+ D + P + G + L DL GIE
Sbjct: 119 STLAR-------YLDNRPLT----VLDPRVLDKHLDRYRKGRRT--LTDLCAHYGIELEG 165
Query: 174 AHDAKADVYATLALVWLIREK 194
AHDA AD A L +V + +
Sbjct: 166 AHDASADAQAALEVVRAVGRR 186
>gi|238892647|ref|YP_002917381.1| oligoribonuclease [Klebsiella pneumoniae NTUH-K2044]
gi|238544963|dbj|BAH61314.1| oligoribonuclease [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 199
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 60
>gi|261342826|ref|ZP_05970684.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
gi|288314868|gb|EFC53806.1| oligoribonuclease [Enterobacter cancerogenus ATCC 35316]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
citreum KM20]
Length = 1437
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 28/192 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V +D ET G D+ + + V++ I+ + + +T IT
Sbjct: 419 YVAFDLETTGLSAVTDKIIELSAVKMQMG-NVIDKFSEY---INPGFPLSDFTTELTSIT 474
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E R + ++G+N + FD + + R
Sbjct: 475 -DAMVANADTEESIVSRFRAWVRD--AILVGHN-VTFDIGFMNAAYSRYNQPDIS----- 525
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N D L R +Y PD S++L +A I AH A D T
Sbjct: 526 -NPIIDTLPFTRWLY---PD----------YKSYRLGTIAKRFNINLEQAHRAIFDSETT 571
Query: 185 LALV-WLIREKK 195
+ LI+E
Sbjct: 572 GHIAWRLIKEAN 583
>gi|161485837|ref|NP_710030.3| oligoribonuclease [Shigella flexneri 2a str. 301]
gi|161486369|ref|NP_839708.2| oligoribonuclease [Shigella flexneri 2a str. 2457T]
gi|229774924|ref|YP_691603.2| oligoribonuclease [Shigella flexneri 5 str. 8401]
gi|41017443|sp|Q83IJ9|ORN_SHIFL RecName: Full=Oligoribonuclease
gi|313646361|gb|EFS10823.1| exonuclease family protein [Shigella flexneri 2a str. 2457T]
gi|332749041|gb|EGJ79464.1| exonuclease family protein [Shigella flexneri K-671]
gi|332749309|gb|EGJ79730.1| exonuclease family protein [Shigella flexneri 4343-70]
gi|332761883|gb|EGJ92157.1| exonuclease family protein [Shigella flexneri 2747-71]
gi|332763212|gb|EGJ93455.1| oligoribonuclease monomer [Shigella flexneri 2930-71]
gi|333009212|gb|EGK28668.1| exonuclease family protein [Shigella flexneri K-218]
gi|333010312|gb|EGK29745.1| exonuclease family protein [Shigella flexneri VA-6]
gi|333011977|gb|EGK31362.1| exonuclease family protein [Shigella flexneri K-304]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|225012673|ref|ZP_03703108.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
MS024-2A]
gi|225003206|gb|EEG41181.1| Exonuclease RNase T and DNA polymerase III [Flavobacteria bacterium
MS024-2A]
Length = 257
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 45/200 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVF 59
+T +D ET G D++ DR + A +++ ++ + +P EA
Sbjct: 5 LTKPLCFFDLETTGTDISKDRIVEIAVLKLHPDGLQEKKEWRTNPEQPIP-----AEASA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ GIT + E F ++ +S + + GYN+ RFD R
Sbjct: 60 VHGITDEMVA----SEPTFKELSNEIYSFIKGCDLAGYNSDRFDIPLLVEELLR---AEV 112
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALANGI----EHV 172
+ + N N D+ + K++ L A E
Sbjct: 113 DFDFKN-NKTVDVQTIFH----------------------KMEQRTLTAALRFYCNEELT 149
Query: 173 NAHDAKADVYAT--LALVWL 190
+AH A AD AT + + L
Sbjct: 150 DAHSAHADTKATHDVLIAQL 169
>gi|50122884|ref|YP_052051.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
gi|59798024|sp|Q6D037|ORN_ERWCT RecName: Full=Oligoribonuclease
gi|49613410|emb|CAG76861.1| oligoribonuclease [Pectobacterium atrosepticum SCRI1043]
Length = 180
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAE 41
>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
Length = 1435
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 473
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 474 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 570
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 571 ATGYLLVKMLKDVIEKGFEY 590
>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9842]
gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
str. T04001]
gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9842]
gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH1134]
gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus AH1134]
gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus B4264]
gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|254360517|ref|ZP_04976666.1| exoribonuclease II [Mannheimia haemolytica PHL213]
gi|261492357|ref|ZP_05988919.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496143|ref|ZP_05992551.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|153091057|gb|EDN73062.1| exoribonuclease II [Mannheimia haemolytica PHL213]
gi|261308245|gb|EEY09540.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261312040|gb|EEY13181.1| exoribonuclease II [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 184
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V DD L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAVHQTDDLL 55
>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
Length = 1435
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 473
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 474 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 570
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 571 ATGYLLVKMLKDVIEKGFEY 590
>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 1435
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 473
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 474 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 570
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 571 ATGYLLVKMLKDVIEKGFEY 590
>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|325499700|gb|EGC97559.1| hypothetical protein ECD227_3797 [Escherichia fergusonii ECD227]
Length = 185
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 46
>gi|331665829|ref|ZP_08366723.1| oligoribonuclease [Escherichia coli TA143]
gi|331056880|gb|EGI28874.1| oligoribonuclease [Escherichia coli TA143]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
str. F0039]
gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
str. F0039]
Length = 896
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 73/194 (37%), Gaps = 37/194 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFF--CKPADDYLPDPEAVF 59
+ V++D ET G +V D Q A V++ + + E E+F +P L D E
Sbjct: 512 DTLVVFDTETTGLNVLEDDIVQIAAVKIAKGKVLENERFEIFIDTKRPIPAMLGDIENPL 571
Query: 60 ITGI------TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
I I TP +AL A F I ++G+N +D N R
Sbjct: 572 IEEIKKHTLHTPAEAL------ARFMEYIDGAM------LVGHNA-TYDYQILYNNLLRY 618
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+S D L + R P ++KL++L +E N
Sbjct: 619 L--PQYTFLQKHSSYIDTLKLTRL---LQPSL----------KNYKLKNLLQEFQLEGQN 663
Query: 174 AHDAKADVYATLAL 187
H A ADV+AT+ L
Sbjct: 664 THLADADVHATVGL 677
>gi|218551434|ref|YP_002385226.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
gi|218358976|emb|CAQ91636.1| oligoribonuclease [Escherichia fergusonii ATCC 35469]
gi|324112239|gb|EGC06217.1| exonuclease [Escherichia fergusonii B253]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|170766878|ref|ZP_02901331.1| oligoribonuclease [Escherichia albertii TW07627]
gi|170124316|gb|EDS93247.1| oligoribonuclease [Escherichia albertii TW07627]
gi|315617577|gb|EFU98183.1| exonuclease family protein [Escherichia coli 3431]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|157147866|ref|YP_001455185.1| oligoribonuclease [Citrobacter koseri ATCC BAA-895]
gi|166230513|sp|A8AMN6|ORN_CITK8 RecName: Full=Oligoribonuclease
gi|157085071|gb|ABV14749.1| hypothetical protein CKO_03672 [Citrobacter koseri ATCC BAA-895]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|288800441|ref|ZP_06405899.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
gi|288332654|gb|EFC71134.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
Length = 285
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
V++D ET G D+ DR Q + ++V ++ E F P P P+ V +T I
Sbjct: 9 LVVFDLETTGLDLVNDRIIQISYIKVHPDGKE--ERENLFINPQK---PIPQEVEALTHI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
T +D AE ++++++ F+ G+N+ FD F R
Sbjct: 64 TNDMV-KDAPTFAEIAQKLYEKFT--GCDFAGFNSNHFDIPMLAEEFSRAGL 112
>gi|270264991|ref|ZP_06193254.1| oligoribonuclease [Serratia odorifera 4Rx13]
gi|270040925|gb|EFA14026.1| oligoribonuclease [Serratia odorifera 4Rx13]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|209921653|ref|YP_002295737.1| oligoribonuclease [Escherichia coli SE11]
gi|209914912|dbj|BAG79986.1| oligoribonuclease [Escherichia coli SE11]
gi|320200705|gb|EFW75291.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli EC4100B]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|167035943|ref|YP_001671174.1| oligoribonuclease [Pseudomonas putida GB-1]
gi|166862431|gb|ABZ00839.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
GB-1]
Length = 180
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 64/208 (30%), Gaps = 42/208 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
+ + D E G D D + A + D + + V +DD L D
Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDDVLARMDEWNTR 63
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFY 111
G + Q+ V AE + F C N+I D R Y
Sbjct: 64 THGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICG---NSICQD----RRFLY 116
Query: 112 RNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
R+ + + + N D+ + ++P+ SFK
Sbjct: 117 RHMRNLENYFHYRN----LDVSTLKELAARWAPNV---------RDSFK----------- 152
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
N H A D+ ++A + RE KL
Sbjct: 153 KGNTHLALDDIRESIAELRHYREHFIKL 180
>gi|146310013|ref|YP_001175087.1| oligoribonuclease [Enterobacter sp. 638]
gi|166918639|sp|A4W5Q6|ORN_ENT38 RecName: Full=Oligoribonuclease
gi|145316889|gb|ABP59036.1| Exonuclease, RNase T and DNA polymerase III [Enterobacter sp.
638]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|191173402|ref|ZP_03034931.1| oligoribonuclease [Escherichia coli F11]
gi|190906378|gb|EDV65988.1| oligoribonuclease [Escherichia coli F11]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|256851899|ref|ZP_05557287.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
gi|260661840|ref|ZP_05862750.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
gi|282931860|ref|ZP_06337341.1| DNA polymerase III [Lactobacillus jensenii 208-1]
gi|256615857|gb|EEU21046.1| DNA polymerase III [Lactobacillus jensenii 27-2-CHN]
gi|260547309|gb|EEX23289.1| DNA polymerase III [Lactobacillus jensenii 115-3-CHN]
gi|281304023|gb|EFA96144.1| DNA polymerase III [Lactobacillus jensenii 208-1]
Length = 317
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 55/299 (18%), Positives = 103/299 (34%), Gaps = 44/299 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT---GITP 65
D ET G DR + AG++V R + + P D+ +P FIT GI
Sbjct: 39 DIETTGLSPYRDRITELAGIKV-RNGKVVAEYSQLVKYPKDNKVPR----FITKLNGIDE 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
L +G+ E F I+GYN + FD + ++ +
Sbjct: 94 ALILANGMPVKEAITEFRNFIG--GDVIVGYN-VNFDLNFIYDLCEKFQLKKLS------ 144
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
N+ D+L R + + +L D GI AH D T
Sbjct: 145 NNYIDVLHFSRVFF-------------KKESHNRLLDCIRRLGISESEAHRGLKDSLDTK 191
Query: 186 ALVWLIREK-KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
A+ + R++ P++ + K+ L+ + + + P ++ +
Sbjct: 192 AVFDIYRKQFTPEMLNEV-----KDSLKSCVLTEEI-PFEYLIKRNPLKNK---TVVFAG 242
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQL----AKRLFTSHDELKGLVPVPIKEVHLNK 299
+ + +I N+ G +R D L S+ EL+ + + + +++
Sbjct: 243 TVNKEELELIVSNMGGQVRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISR 301
>gi|269302439|gb|ACZ32539.1| exonuclease, DNA polymerase III, epsilon subunit family
[Chlamydophila pneumoniae LPCoLN]
Length = 249
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 44/243 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F D E G DV DR + A VR I S E + + E+ + I+
Sbjct: 9 FTCLDCEMTGLDVKKDRIIEIAAVRFTFD-SVISSIEFL---INPERVVSAESQRVHHIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ AE +I FF I+G+ ++ FD +
Sbjct: 65 NAMLRDQPKI-AEVFPQIKAFF-KEGDYIVGH-SVGFDLQVL--------SQEMERIGET 113
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S++ ++D +R Y SP+ L+ LA+ + + H A DV
Sbjct: 114 FLSKYTIIDTLRLAKEYGDSPNN-------------SLESLAVHFNVPYDGNHRAMKDVE 160
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
+ + + ++ F L K L K I ++ M PL G + P
Sbjct: 161 ININIFKHLCKR----FRTLEQL--KQVLAKPIKMKYM-PL-------GKHKGRCFSEIP 206
Query: 243 VAW 245
+A+
Sbjct: 207 LAY 209
>gi|237804887|ref|YP_002889041.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273187|emb|CAX10100.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 250
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G DV DR +FA +R +++I + F P E+ I I+
Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIR--FTFDEIIDSVEFLIHPERAV--SAESQKIHKIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
LRD E RI FF I+G+ ++ FD R
Sbjct: 65 -DAMLRDKPKFGEVFSRIKGFF-KERDHIVGH-HVGFDLQVLSQESERLGETLLP----- 116
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D +R Y SP+ L+ LA + H H A DV
Sbjct: 117 --KHHYVIDTLRLAKEYGDSPNN-------------SLEALARHFNVPHQGNHRAMKDVE 161
Query: 183 ATLALVWLIREK 194
+ + + ++
Sbjct: 162 MNVKVFKHLTKR 173
>gi|15605265|ref|NP_220051.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
D/UW-3/CX]
gi|3328974|gb|AAC68138.1| DNA Pol III Epsilon Chain [Chlamydia trachomatis D/UW-3/CX]
gi|297748666|gb|ADI51212.1| Exonuclease family protein [Chlamydia trachomatis D-EC]
gi|297749546|gb|ADI52224.1| Exonuclease family protein [Chlamydia trachomatis D-LC]
Length = 250
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G DV DR +FA +R +++I + F P E+ I I+
Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIR--FTFDEIIDSVEFLIHPERAV--SAESQKIHKIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
LRD E RI FF I+G+ ++ FD R
Sbjct: 65 -DAMLRDKPKFGEVFSRIKGFF-KERDHIVGH-HVGFDLQVLSQESERLGETLLP----- 116
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D +R Y SP+ L+ LA + H H A DV
Sbjct: 117 --KHHYVIDTLRLAKGYGDSPNN-------------SLEALARHFNVPHQGNHRAMKDVE 161
Query: 183 ATLALVWLIREK 194
+ + + ++
Sbjct: 162 MNVKVFKHLTKR 173
>gi|89110885|ref|AP_004665.1| oligoribonuclease [Escherichia coli str. K-12 substr. W3110]
gi|90111697|ref|NP_418586.4| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
gi|157155866|ref|YP_001465662.1| oligoribonuclease [Escherichia coli E24377A]
gi|157163628|ref|YP_001460946.1| oligoribonuclease [Escherichia coli HS]
gi|161486014|ref|NP_757097.2| oligoribonuclease [Escherichia coli CFT073]
gi|161949984|ref|YP_405804.2| oligoribonuclease [Shigella dysenteriae Sd197]
gi|161986383|ref|YP_313069.2| oligoribonuclease [Shigella sonnei Ss046]
gi|170021825|ref|YP_001726779.1| oligoribonuclease [Escherichia coli ATCC 8739]
gi|170083611|ref|YP_001732931.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
gi|170681955|ref|YP_001746560.1| oligoribonuclease [Escherichia coli SMS-3-5]
gi|187730220|ref|YP_001882856.1| oligoribonuclease [Shigella boydii CDC 3083-94]
gi|188495936|ref|ZP_03003206.1| oligoribonuclease [Escherichia coli 53638]
gi|191165629|ref|ZP_03027469.1| oligoribonuclease [Escherichia coli B7A]
gi|193065728|ref|ZP_03046792.1| oligoribonuclease [Escherichia coli E22]
gi|194428928|ref|ZP_03061461.1| oligoribonuclease [Escherichia coli B171]
gi|194437211|ref|ZP_03069309.1| oligoribonuclease [Escherichia coli 101-1]
gi|215489509|ref|YP_002331940.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
gi|218556717|ref|YP_002389631.1| oligoribonuclease [Escherichia coli IAI1]
gi|218561324|ref|YP_002394237.1| oligoribonuclease [Escherichia coli S88]
gi|218692499|ref|YP_002400711.1| oligoribonuclease [Escherichia coli ED1a]
gi|218697914|ref|YP_002405581.1| oligoribonuclease [Escherichia coli 55989]
gi|218702862|ref|YP_002410491.1| oligoribonuclease [Escherichia coli IAI39]
gi|218707776|ref|YP_002415295.1| oligoribonuclease [Escherichia coli UMN026]
gi|229560203|ref|YP_672251.2| oligoribonuclease [Escherichia coli 536]
gi|229775946|ref|YP_859834.2| oligoribonuclease [Escherichia coli APEC O1]
gi|238903272|ref|YP_002929068.1| oligoribonuclease [Escherichia coli BW2952]
gi|253775210|ref|YP_003038041.1| oligoribonuclease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254164094|ref|YP_003047202.1| oligoribonuclease [Escherichia coli B str. REL606]
gi|256019810|ref|ZP_05433675.1| oligoribonuclease [Shigella sp. D9]
gi|256025100|ref|ZP_05438965.1| oligoribonuclease [Escherichia sp. 4_1_40B]
gi|260846995|ref|YP_003224773.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
gi|260858318|ref|YP_003232209.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
gi|260870927|ref|YP_003237329.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
gi|293402792|ref|ZP_06646889.1| oligoribonuclease [Escherichia coli FVEC1412]
gi|293407892|ref|ZP_06651732.1| oligoribonuclease [Escherichia coli B354]
gi|293417668|ref|ZP_06660290.1| orn oligoribonuclease [Escherichia coli B185]
gi|293476475|ref|ZP_06664883.1| orn [Escherichia coli B088]
gi|297518431|ref|ZP_06936817.1| oligoribonuclease [Escherichia coli OP50]
gi|298378322|ref|ZP_06988206.1| oligoribonuclease [Escherichia coli FVEC1302]
gi|301027985|ref|ZP_07191269.1| exonuclease [Escherichia coli MS 196-1]
gi|306815620|ref|ZP_07449769.1| oligoribonuclease [Escherichia coli NC101]
gi|307140859|ref|ZP_07500215.1| oligoribonuclease [Escherichia coli H736]
gi|307312001|ref|ZP_07591638.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
gi|309787669|ref|ZP_07682280.1| exonuclease family protein [Shigella dysenteriae 1617]
gi|312965838|ref|ZP_07780064.1| exonuclease family protein [Escherichia coli 2362-75]
gi|312974028|ref|ZP_07788199.1| exonuclease family protein [Escherichia coli 1827-70]
gi|331644912|ref|ZP_08346029.1| oligoribonuclease [Escherichia coli H736]
gi|331650290|ref|ZP_08351362.1| oligoribonuclease [Escherichia coli M605]
gi|331655993|ref|ZP_08356981.1| oligoribonuclease [Escherichia coli M718]
gi|331660740|ref|ZP_08361672.1| oligoribonuclease [Escherichia coli TA206]
gi|331671070|ref|ZP_08371903.1| oligoribonuclease [Escherichia coli TA271]
gi|331671316|ref|ZP_08372114.1| oligoribonuclease [Escherichia coli TA280]
gi|331680295|ref|ZP_08380954.1| oligoribonuclease [Escherichia coli H591]
gi|331681184|ref|ZP_08381821.1| oligoribonuclease [Escherichia coli H299]
gi|67469688|sp|P0A784|ORN_ECOLI RecName: Full=Oligoribonuclease
gi|67469689|sp|P0A785|ORN_ECOL6 RecName: Full=Oligoribonuclease
gi|166918637|sp|A7ZV33|ORN_ECO24 RecName: Full=Oligoribonuclease
gi|166918638|sp|A8A7Q9|ORN_ECOHS RecName: Full=Oligoribonuclease
gi|85676916|dbj|BAE78166.1| oligoribonuclease [Escherichia coli str. K12 substr. W3110]
gi|87082382|gb|AAC77122.2| oligoribonuclease [Escherichia coli str. K-12 substr. MG1655]
gi|157069308|gb|ABV08563.1| oligoribonuclease [Escherichia coli HS]
gi|157077896|gb|ABV17604.1| oligoribonuclease [Escherichia coli E24377A]
gi|169756753|gb|ACA79452.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli ATCC
8739]
gi|169891446|gb|ACB05153.1| oligoribonuclease [Escherichia coli str. K-12 substr. DH10B]
gi|170519673|gb|ACB17851.1| oligoribonuclease [Escherichia coli SMS-3-5]
gi|187427212|gb|ACD06486.1| oligoribonuclease [Shigella boydii CDC 3083-94]
gi|188491135|gb|EDU66238.1| oligoribonuclease [Escherichia coli 53638]
gi|190904324|gb|EDV64033.1| oligoribonuclease [Escherichia coli B7A]
gi|192926597|gb|EDV81227.1| oligoribonuclease [Escherichia coli E22]
gi|194412981|gb|EDX29270.1| oligoribonuclease [Escherichia coli B171]
gi|194423767|gb|EDX39756.1| oligoribonuclease [Escherichia coli 101-1]
gi|215267581|emb|CAS12036.1| oligoribonuclease [Escherichia coli O127:H6 str. E2348/69]
gi|218354646|emb|CAV01632.1| oligoribonuclease [Escherichia coli 55989]
gi|218363486|emb|CAR01140.1| oligoribonuclease [Escherichia coli IAI1]
gi|218368093|emb|CAR05900.1| oligoribonuclease [Escherichia coli S88]
gi|218372848|emb|CAR20727.1| oligoribonuclease [Escherichia coli IAI39]
gi|218430063|emb|CAR10906.1| oligoribonuclease [Escherichia coli ED1a]
gi|218434873|emb|CAR15811.1| oligoribonuclease [Escherichia coli UMN026]
gi|222035935|emb|CAP78680.1| Oligoribonuclease [Escherichia coli LF82]
gi|238861937|gb|ACR63935.1| oligoribonuclease [Escherichia coli BW2952]
gi|242379688|emb|CAQ34511.1| oligoribonuclease monomer, subunit of oligoribonuclease
[Escherichia coli BL21(DE3)]
gi|253326254|gb|ACT30856.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975995|gb|ACT41666.1| oligoribonuclease [Escherichia coli B str. REL606]
gi|253980151|gb|ACT45821.1| oligoribonuclease [Escherichia coli BL21(DE3)]
gi|257756967|dbj|BAI28469.1| oligoribonuclease Orn [Escherichia coli O26:H11 str. 11368]
gi|257762142|dbj|BAI33639.1| oligoribonuclease Orn [Escherichia coli O103:H2 str. 12009]
gi|257767283|dbj|BAI38778.1| oligoribonuclease Orn [Escherichia coli O111:H- str. 11128]
gi|260451008|gb|ACX41430.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli DH1]
gi|284924347|emb|CBG37463.1| oligoribonuclease [Escherichia coli 042]
gi|291320928|gb|EFE60370.1| orn [Escherichia coli B088]
gi|291429707|gb|EFF02721.1| oligoribonuclease [Escherichia coli FVEC1412]
gi|291430386|gb|EFF03384.1| orn oligoribonuclease [Escherichia coli B185]
gi|291472143|gb|EFF14625.1| oligoribonuclease [Escherichia coli B354]
gi|294490725|gb|ADE89481.1| oligoribonuclease [Escherichia coli IHE3034]
gi|298280656|gb|EFI22157.1| oligoribonuclease [Escherichia coli FVEC1302]
gi|299878895|gb|EFI87106.1| exonuclease [Escherichia coli MS 196-1]
gi|305851282|gb|EFM51737.1| oligoribonuclease [Escherichia coli NC101]
gi|306907808|gb|EFN38309.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli W]
gi|307556332|gb|ADN49107.1| oligoribonuclease [Escherichia coli ABU 83972]
gi|307629236|gb|ADN73540.1| oligoribonuclease [Escherichia coli UM146]
gi|308924419|gb|EFP69915.1| exonuclease family protein [Shigella dysenteriae 1617]
gi|309704670|emb|CBJ04020.1| oligoribonuclease [Escherichia coli ETEC H10407]
gi|310331562|gb|EFP98818.1| exonuclease family protein [Escherichia coli 1827-70]
gi|312289081|gb|EFR16975.1| exonuclease family protein [Escherichia coli 2362-75]
gi|312948814|gb|ADR29641.1| oligoribonuclease [Escherichia coli O83:H1 str. NRG 857C]
gi|315063479|gb|ADT77806.1| oligoribonuclease [Escherichia coli W]
gi|315138719|dbj|BAJ45878.1| oligoribonuclease [Escherichia coli DH1]
gi|320173681|gb|EFW48871.1| 3'-to-5' oligoribonuclease (orn) [Shigella dysenteriae CDC
74-1112]
gi|320193545|gb|EFW68182.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli WV_060327]
gi|323156018|gb|EFZ42180.1| exonuclease family protein [Escherichia coli EPECa14]
gi|323166646|gb|EFZ52404.1| exonuclease family protein [Shigella sonnei 53G]
gi|323171596|gb|EFZ57242.1| exonuclease family protein [Escherichia coli LT-68]
gi|323176077|gb|EFZ61669.1| exonuclease family protein [Escherichia coli 1180]
gi|323182271|gb|EFZ67681.1| exonuclease family protein [Escherichia coli 1357]
gi|323189956|gb|EFZ75234.1| exonuclease family protein [Escherichia coli RN587/1]
gi|323380442|gb|ADX52710.1| Exonuclease RNase T and DNA polymerase III [Escherichia coli
KO11]
gi|323935480|gb|EGB31818.1| exonuclease [Escherichia coli E1520]
gi|323940084|gb|EGB36278.1| exonuclease [Escherichia coli E482]
gi|323946101|gb|EGB42137.1| exonuclease [Escherichia coli H120]
gi|323950766|gb|EGB46644.1| exonuclease [Escherichia coli H252]
gi|323955595|gb|EGB51358.1| exonuclease [Escherichia coli H263]
gi|323960351|gb|EGB55990.1| exonuclease [Escherichia coli H489]
gi|323965551|gb|EGB61005.1| exonuclease [Escherichia coli M863]
gi|323970580|gb|EGB65839.1| exonuclease [Escherichia coli TA007]
gi|324118730|gb|EGC12622.1| exonuclease [Escherichia coli E1167]
gi|327250105|gb|EGE61824.1| exonuclease family protein [Escherichia coli STEC_7v]
gi|330908507|gb|EGH37026.1| 3'-to-5' oligoribonuclease (orn) [Escherichia coli AA86]
gi|331035887|gb|EGI08125.1| oligoribonuclease [Escherichia coli H736]
gi|331040684|gb|EGI12842.1| oligoribonuclease [Escherichia coli M605]
gi|331046347|gb|EGI18437.1| oligoribonuclease [Escherichia coli M718]
gi|331051782|gb|EGI23821.1| oligoribonuclease [Escherichia coli TA206]
gi|331061659|gb|EGI33585.1| oligoribonuclease [Escherichia coli TA271]
gi|331071161|gb|EGI42518.1| oligoribonuclease [Escherichia coli TA280]
gi|331071758|gb|EGI43094.1| oligoribonuclease [Escherichia coli H591]
gi|331081405|gb|EGI52566.1| oligoribonuclease [Escherichia coli H299]
gi|332346241|gb|AEE59575.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|90108543|pdb|1YTA|A Chain A, Crystal Structure Of Oligoribonuclease, The Lone
Essential Exoribonuclease In Escherichia Coli
gi|90108544|pdb|1YTA|B Chain B, Crystal Structure Of Oligoribonuclease, The Lone
Essential Exoribonuclease In Escherichia Coli
gi|90108545|pdb|1YTA|C Chain C, Crystal Structure Of Oligoribonuclease, The Lone
Essential Exoribonuclease In Escherichia Coli
gi|90108546|pdb|1YTA|D Chain D, Crystal Structure Of Oligoribonuclease, The Lone
Essential Exoribonuclease In Escherichia Coli
Length = 180
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 5 NNLIWIDLEXTGLDPERDRIIEIATLVTDANLNILAE 41
>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
Length = 1443
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 28/193 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G A D + A V++ + + I+ E F + + +TG
Sbjct: 426 TTYVVFDVETTGLSTAYDTIIELAAVKI-KDGQVIDKYESFA---NPHHPLSATTIELTG 481
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT VE + + H F I+ +N FD F Y +
Sbjct: 482 ITDDMVRNAPEVE-QVIKEFHAFI---GDAIVVAHNASFD-----IGFLYTGYKKFGLE- 531
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++ ++D + P + +L L IE H A D
Sbjct: 532 ---DTVHPVIDTLELARLLYPT----------MKNHRLNTLCKKFNIELTQHHRAIYDTE 578
Query: 183 AT-LALVWLIREK 194
AT L+ L+++
Sbjct: 579 ATGYLLLQLLKDA 591
>gi|261823163|ref|YP_003261269.1| oligoribonuclease [Pectobacterium wasabiae WPP163]
gi|261607176|gb|ACX89662.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
wasabiae WPP163]
Length = 180
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAE 41
>gi|227113804|ref|ZP_03827460.1| oligoribonuclease [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
gi|227326226|ref|ZP_03830250.1| oligoribonuclease [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 180
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAE 41
>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 1492
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 32/189 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAV- 58
+ + FV++D ET G A DR + V+ D ++ F + +P P +
Sbjct: 459 LDDTFVVFDIETTGFSAAEDRIIEIGAVKITDGA--IVDRFSTFV----NPEVPIPFEIQ 512
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+T IT L +E + F + + +N FD + R
Sbjct: 513 QLTHITDDMVLEAPKIEEALPAFL--DFVGESALVA--HNAGFDVGFIEQNCVRLGRSRT 568
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S +D + P + +KL +A A I N H A
Sbjct: 569 FTS----------VDTVGLARVLLPTLSK----------YKLNIVAKALNISLENHHRAV 608
Query: 179 ADVYATLAL 187
D AT +
Sbjct: 609 DDAAATAEI 617
>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
Length = 1492
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 32/189 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAV- 58
+ + FV++D ET G A DR + V+ D ++ F + +P P +
Sbjct: 459 LDDTFVVFDIETTGFSAAEDRIIEIGAVKITDGA--IVDRFSTFV----NPEVPIPFEIQ 512
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+T IT L +E + F + + +N FD + R
Sbjct: 513 QLTHITDDMVLEAPKIEEALPAFL--DFVGESALVA--HNAGFDVGFIEQNCVRLGRSRT 568
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S +D + P + +KL +A A I N H A
Sbjct: 569 FTS----------VDTVGLARVLLPTLSK----------YKLNIVAKALNISLENHHRAV 608
Query: 179 ADVYATLAL 187
D AT +
Sbjct: 609 DDAAATAEI 617
>gi|323975494|gb|EGB70595.1| exonuclease [Escherichia coli TW10509]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|311281283|ref|YP_003943514.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
SCF1]
gi|308750478|gb|ADO50230.1| Exonuclease RNase T and DNA polymerase III [Enterobacter cloacae
SCF1]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|158428766|pdb|2IGI|A Chain A, Crystal Structure Of E. Coli Oligoribonuclease
gi|158428767|pdb|2IGI|B Chain B, Crystal Structure Of E. Coli Oligoribonuclease
Length = 180
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 41
>gi|149377478|ref|ZP_01895220.1| exonuclease [Marinobacter algicola DG893]
gi|149358245|gb|EDM46725.1| exonuclease [Marinobacter algicola DG893]
Length = 236
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 29/183 (15%)
Query: 9 DYETFGRDVALDRPAQFA--GVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + A D +R + + ++ +P D E V I GI P
Sbjct: 45 DLETTGLNPAKDNVIAIGAVAIRHNAIDLS--DQFDLILRRPELDI---SETVLIHGIGP 99
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+AL G + + ++ + I+ Y++ FD + + + +W
Sbjct: 100 -EALTQGHETEDALLHLLEWMNGDP--ILAYHS-AFDQKFLEKALKQTLGYTQPHTW--- 152
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
D+ +++ A Y P+ G L + A +E H A AD T
Sbjct: 153 ---LDVAEMLPAYY---------PNSKTGGKG--LDNWADFFDLEVSARHHAAADAMVTA 198
Query: 186 ALV 188
L
Sbjct: 199 ELT 201
>gi|156741527|ref|YP_001431656.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
13941]
gi|156232855|gb|ABU57638.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
13941]
Length = 944
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 69/197 (35%), Gaps = 40/197 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M +V D ET G + +D + A V R IE+ + +P LP +
Sbjct: 1 MDQIYVAIDVETTGLEAGVDEIIEIAAVKFRTGE---VIETFDTL-VQPR-HSLP-LNSS 54
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGIT + L +E + R F ++G+N +RFD + R ++
Sbjct: 55 RLTGIT-AEMLAGAPRFSEVAPRFAAFLKNYP--LVGHN-VRFDINMLQAQGMRLPQPAF 110
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
D P +++L LA GI H AH A
Sbjct: 111 --------------DTFELATLLMPR----------TPAYRLSALAETLGIVHDEAHRAL 146
Query: 179 ADVYAT----LALVWLI 191
+D T L L+ I
Sbjct: 147 SDADVTRQVFLHLLRRI 163
>gi|51594770|ref|YP_068961.1| oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
gi|153949964|ref|YP_001402615.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
gi|229597226|ref|YP_001722527.2| oligoribonuclease [Yersinia pseudotuberculosis YPIII]
gi|229597243|ref|YP_001870889.2| oligoribonuclease [Yersinia pseudotuberculosis PB1/+]
gi|59798016|sp|Q66FC2|ORN_YERPS RecName: Full=Oligoribonuclease
gi|166918641|sp|A7FMY7|ORN_YERP3 RecName: Full=Oligoribonuclease
gi|51588052|emb|CAH19658.1| possible oligoribonuclease [Yersinia pseudotuberculosis IP 32953]
gi|152961459|gb|ABS48920.1| oligoribonuclease [Yersinia pseudotuberculosis IP 31758]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|150260590|ref|ZP_01917318.1| oligoribonuclease [Yersinia pestis CA88-4125]
gi|161484882|ref|NP_667960.2| oligoribonuclease [Yersinia pestis KIM 10]
gi|161511446|ref|NP_991914.2| oligoribonuclease [Yersinia pestis biovar Microtus str. 91001]
gi|162419396|ref|YP_001605286.1| oligoribonuclease [Yersinia pestis Angola]
gi|165926762|ref|ZP_02222594.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165936480|ref|ZP_02225048.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
gi|166011882|ref|ZP_02232780.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166213971|ref|ZP_02240006.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
gi|167400566|ref|ZP_02306075.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167418918|ref|ZP_02310671.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423542|ref|ZP_02315295.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|218927569|ref|YP_002345444.1| oligoribonuclease [Yersinia pestis CO92]
gi|229358039|ref|YP_653824.2| oligoribonuclease [Yersinia pestis Antiqua]
gi|229559847|ref|YP_649232.2| oligoribonuclease [Yersinia pestis Nepal516]
gi|229836625|ref|ZP_04456791.1| oligoribonuclease [Yersinia pestis Pestoides A]
gi|229840237|ref|ZP_04460396.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842315|ref|ZP_04462470.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
195]
gi|229903946|ref|ZP_04519059.1| oligoribonuclease [Yersinia pestis Nepal516]
gi|270489066|ref|ZP_06206140.1| exonuclease [Yersinia pestis KIM D27]
gi|294502475|ref|YP_003566537.1| oligoribonuclease [Yersinia pestis Z176003]
gi|20138838|sp|Q8ZIW9|ORN_YERPE RecName: Full=Oligoribonuclease
gi|115346180|emb|CAL19048.1| oligoribonuclease [Yersinia pestis CO92]
gi|149289998|gb|EDM40075.1| oligoribonuclease [Yersinia pestis CA88-4125]
gi|162352211|gb|ABX86159.1| oligoribonuclease [Yersinia pestis Angola]
gi|165915596|gb|EDR34205.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. IP275]
gi|165921385|gb|EDR38609.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165989241|gb|EDR41542.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204766|gb|EDR49246.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962912|gb|EDR58933.1| oligoribonuclease [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167049934|gb|EDR61342.1| oligoribonuclease [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057712|gb|EDR67458.1| oligoribonuclease [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229679716|gb|EEO75819.1| oligoribonuclease [Yersinia pestis Nepal516]
gi|229690625|gb|EEO82679.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. India
195]
gi|229696603|gb|EEO86650.1| oligoribonuclease [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229706309|gb|EEO92317.1| oligoribonuclease [Yersinia pestis Pestoides A]
gi|262360505|gb|ACY57226.1| oligoribonuclease [Yersinia pestis D106004]
gi|262364452|gb|ACY61009.1| oligoribonuclease [Yersinia pestis D182038]
gi|270337570|gb|EFA48347.1| exonuclease [Yersinia pestis KIM D27]
gi|294352934|gb|ADE63275.1| oligoribonuclease [Yersinia pestis Z176003]
gi|320013769|gb|ADV97340.1| oligoribonuclease [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|220913226|ref|YP_002488535.1| DNA polymerase III subunit epsilon [Arthrobacter chlorophenolicus
A6]
gi|219860104|gb|ACL40446.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
chlorophenolicus A6]
Length = 236
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/212 (21%), Positives = 70/212 (33%), Gaps = 60/212 (28%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFIT 61
+D ET GR+ R + VD + E I E +L DP EA +
Sbjct: 12 FDLETTGRNSRAARIVTASVTVVDHRGEVIREHE---------WLADPGVEIPTEASDVH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
G+T ++A +DG E +R + +
Sbjct: 63 GVTTEQARKDGRPAHEVTRELAAVL---------------------QELFDTGVPVIA-- 99
Query: 122 WDNGNSRWDLLDVMRAIYAFS---PDGIQWPSRD------------DGATSFKLQDLALA 166
N+ +D + A + P ++P D G + L L
Sbjct: 100 ---FNASYDF--TVLAAESARYGVPQLTRFPVLDPYIMNKQVDRYRKGKRT--LTALCEE 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G+ NAH + AD ATL ++ + K PKL
Sbjct: 153 YGVVLDNAHTSAADALATLKVLDAMAGKFPKL 184
>gi|333011146|gb|EGK30560.1| exonuclease family protein [Shigella flexneri K-272]
gi|333012659|gb|EGK32039.1| exonuclease family protein [Shigella flexneri K-227]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDTNLNILAE 42
>gi|167465490|ref|ZP_02330579.1| Exonuclease RNase T and DNA polymerase III [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 190
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 40/188 (21%)
Query: 15 RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVV 74
D D+ + A +R D + +V K + T +TP+ G+
Sbjct: 1 LDPTKDQITEIAAIRTDL-IREYGRLDVRITKNSG-----------TKLTPEIINLTGIN 48
Query: 75 EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDV 134
E+ I + ++P + + + +DL
Sbjct: 49 ESMMRGGIPEELAIP-----------------LLACFMSGSIVVAHH-----APFDL--S 84
Query: 135 MRAIYAFSPDGI----QWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWL 190
A Y P + S L +A GIE H A ADV AT+ +
Sbjct: 85 FLARYLVEPSSFVCTRVLSKLVEPGESASLAAVAERRGIELTGHHRAMADVEATVKIFQQ 144
Query: 191 IREKKPKL 198
++ + L
Sbjct: 145 LKAEADAL 152
>gi|329667930|gb|AEB93878.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii DPC
6026]
Length = 320
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 90/268 (33%), Gaps = 45/268 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+++ + D ET G DR + G++V E + + P + +P A
Sbjct: 30 PDNYTLIDVETTGLSPYRDRITEMGGLKVRHG-EVVATFSELVKFPDSNKVP---AFITK 85
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GI G+ E ++ ++ F + I+GYN + FD F + + Y
Sbjct: 86 LNGIDEATIEEKGLPVQEAIKK-YREFIGSDP-IVGYN-VNFD-----LNFVYDLAEKYH 137
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N N D+ + R+ Y P +L D I H
Sbjct: 138 LTVLN-NDYVDVYRLARSFY---------PQEQHN----RLLDCMHRLDIAETQEHRGLD 183
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
D T + ++ +LF + R + ++ L +V S F +
Sbjct: 184 DCLDT----KKVFDEFHRLFRQEHMLRAQEMVKTLDLTSEWPEIVKQSQAFRS------- 232
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRVFQD 267
P A K+ VI +L D +
Sbjct: 233 --PFAH----KNVVIAGDLDVDEYELAN 254
>gi|239928032|ref|ZP_04684985.1| DNA polymerase III [Streptomyces ghanaensis ATCC 14672]
gi|291436367|ref|ZP_06575757.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339262|gb|EFE66218.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 631
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 30/182 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A + + E+ DP V + G+T ++
Sbjct: 24 DVETSGLMARRDRVLSVAVITIGPDGEQTGEFSTL---LNPGC--DPGPVEVHGLTVERL 78
Query: 69 LRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G + + RI ++ +N +FD + + F R W
Sbjct: 79 --QGAPTFDQVAGRIGAMLQ--GRVLVAHNA-QFDYDFLAHEFAR------ARMW----- 122
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
L V + + + + P DD KL LA G+ AHDA D +
Sbjct: 123 ----LPVSQRLCTLALNRQVDPPTDD----MKLGTLAAHYGVSRQRAHDALDDTRVLAGI 174
Query: 188 VW 189
+
Sbjct: 175 LR 176
>gi|158284602|ref|XP_307582.4| Anopheles gambiae str. PEST AGAP012804-PA [Anopheles gambiae str.
PEST]
gi|157020970|gb|EAA03378.5| AGAP012804-PA [Anopheles gambiae str. PEST]
Length = 228
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP 47
+ V D E G DV DR + A + D + I + +P
Sbjct: 44 QNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAKGPNIIINEP 89
>gi|118790162|ref|XP_318057.3| AGAP004759-PA [Anopheles gambiae str. PEST]
gi|116122385|gb|EAA13240.3| AGAP004759-PA [Anopheles gambiae str. PEST]
Length = 191
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP 47
+ V D E G DV DR + A + D + I + +P
Sbjct: 7 QNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAKGPNIIINEP 52
>gi|291327132|ref|ZP_06127108.2| oligoribonuclease [Providencia rettgeri DSM 1131]
gi|291311676|gb|EFE52129.1| oligoribonuclease [Providencia rettgeri DSM 1131]
Length = 187
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 12 NNLIWIDLEMTGLDPVRDRIIEIATIVTDSHLNILAE 48
>gi|161984789|ref|YP_410541.2| oligoribonuclease [Shigella boydii Sb227]
gi|320183731|gb|EFW58568.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
gi|320187043|gb|EFW61754.1| 3'-to-5' oligoribonuclease (orn) [Shigella flexneri CDC 796-83]
gi|332087020|gb|EGI92154.1| exonuclease family protein [Shigella boydii 3594-74]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|323466410|gb|ADX70097.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus H10]
Length = 927
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 47/202 (23%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PE 56
+ F + D ET G QF I++ +V + + P P+
Sbjct: 8 DTFAVVDLETTGTQREKGHHIIQFGCA-------IIKNMKVVKTYSFMIN---PHREIPQ 57
Query: 57 AVF-ITGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+V +TGI D E +F + +I + T + +N + FD + +
Sbjct: 58 SVVNLTGI----HNEDVQGEDDFSVYAPKIIEIL--KGTVFVAHN-VDFDLPFLNYELVQ 110
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ Y++ N D +++ + + P+ S+KL DL I+H+
Sbjct: 111 HGYEALT------NKAIDTVELAKIAF---------PT----LPSYKLSDLTAQLKIKHL 151
Query: 173 NAHDAKADVYAT-LALVWLIRE 193
N H A +D Y T + L+ +I +
Sbjct: 152 NPHKADSDAYGTAVLLIKIIHK 173
>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
HTCC2559]
gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
HTCC2559]
Length = 1454
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 5 FVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D + + ++ KP +P
Sbjct: 2 YLIFDTETTGLPKNYNAPITDTDNWPRCIQIAWQLHDDMGKLVSHDDMLI-KPDGFNIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
++ I GI+ + A ++GV + + ++ T + N+ FD FYR
Sbjct: 61 -DSEQIHGISTELADKNGVDLVDSLHKFNEALKQ--TKFVVGQNVAFDINIMGAEFYRKG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI----E 170
D+ L V+ + + + P G FKL L +
Sbjct: 118 IDNPLQE----------LPVLDTCTETTAELCKIPGGRGGK--FKLPTLTELHQFLFNKA 165
Query: 171 HVNAHDAKADVYATLAL-VWLIREK 194
AH+A ADV AT + LIR++
Sbjct: 166 FNEAHNATADVEATTRCFLELIRKR 190
>gi|47096482|ref|ZP_00234074.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
F6854]
gi|254899404|ref|ZP_05259328.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes J0161]
gi|254912457|ref|ZP_05262469.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
gi|254936784|ref|ZP_05268481.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
gi|284802344|ref|YP_003414209.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes 08-5578]
gi|284995486|ref|YP_003417254.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes 08-5923]
gi|47015135|gb|EAL06076.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 1/2a
F6854]
gi|258609379|gb|EEW21987.1| ATP-dependent helicase DinG [Listeria monocytogenes F6900]
gi|284057906|gb|ADB68847.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes 08-5578]
gi|284060953|gb|ADB71892.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes 08-5923]
gi|293590439|gb|EFF98773.1| ATP-dependent helicase DinG [Listeria monocytogenes J2818]
Length = 928
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|238756168|ref|ZP_04617488.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
gi|238705642|gb|EEP98039.1| Oligoribonuclease [Yersinia ruckeri ATCC 29473]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
Length = 1444
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 48/231 (20%), Positives = 79/231 (34%), Gaps = 41/231 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+V++D ET G + + A V+V + E I+ + F P P +V
Sbjct: 427 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRF-MSFANPG-----HPLSVTTME 479
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT + ++D E R F + +N FD + R
Sbjct: 480 LTGIT-DEMVKDAPKPDEVLAR---FVDWAGDATLVAHNASFDIGFLNAGLARMGRGKIA 535
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N ++D + PD + +L L IE H A
Sbjct: 536 ----NP-----VIDTLELARFLYPDL----------KNHRLNTLCKKFDIELTQHHRAIY 576
Query: 180 DVYATLA-LVWLIREKKPK--LFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
D AT L+ L++E + + LF + R ++ + P HV+
Sbjct: 577 DAEATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRL----ARPF-HVT 622
>gi|238793401|ref|ZP_04637027.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
gi|238727370|gb|EEQ18898.1| Oligoribonuclease [Yersinia intermedia ATCC 29909]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|238796040|ref|ZP_04639551.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
gi|238719985|gb|EEQ11790.1| Oligoribonuclease [Yersinia mollaretii ATCC 43969]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|290991983|ref|XP_002678614.1| predicted protein [Naegleria gruberi]
gi|284092227|gb|EFC45870.1| predicted protein [Naegleria gruberi]
Length = 302
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 14/190 (7%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ V+ D E + + R + A R+ I S DY+P+P IT I
Sbjct: 80 NVVVLDIEGTSTNTSYCRMIEVACARI-VDGTSISSFTSLVNA-DIDYIPEPVQ-EITKI 136
Query: 64 TPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T KA+ D + +++ F S + ++G+N +RFD N F R +
Sbjct: 137 T--KAMIDLSPPPQIVLSQLYNFLSSQPSLVVGHN-VRFDASVIYNEFVRYKIINNEVHK 193
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHDAKADV 181
+ L + Q G +KL +L G+ +NAH A ADV
Sbjct: 194 PDDFISHSLFTNTLCTLKLARRLFQ------GQPDYKLGNLVENLGLGRSINAHRAHADV 247
Query: 182 YATLALVWLI 191
T L I
Sbjct: 248 SMTTLLWRRI 257
>gi|166154751|ref|YP_001654869.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 434/Bu]
gi|166155626|ref|YP_001653881.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301336025|ref|ZP_07224269.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis L2tet1]
gi|165930739|emb|CAP04236.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis 434/Bu]
gi|165931614|emb|CAP07190.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 250
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G DV DR +FA +R +++I + F P E+ I I+
Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIR--FTFDEIIDSVEFLIHPERAV--SAESQKIHKIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
LRD E RI FF I+G+ ++ FD R
Sbjct: 65 -DAMLRDKPKFGEVFSRIKGFF-KERDHIVGH-HVGFDLQVLSQESERLGETLLP----- 116
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D +R Y SP+ L+ LA + H H A DV
Sbjct: 117 --KHHYVIDTLRLAKEYGDSPNN-------------SLEALARHFNVPHQGNHRAMKDVE 161
Query: 183 ATLALVWLIREK 194
+ + + ++
Sbjct: 162 MNVKVFKHLTKR 173
>gi|238784781|ref|ZP_04628783.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
gi|238714294|gb|EEQ06304.1| Oligoribonuclease [Yersinia bercovieri ATCC 43970]
Length = 181
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
Length = 1439
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 28/192 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + I++ E F + +TGI
Sbjct: 422 TYVVFDVETTGLSAIYDNIIELAAVKM-QNGNVIDTFEEF---INPGRPLSATIIDLTGI 477
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T L + E E ++ + +N FD + + R+ ++
Sbjct: 478 T-DAMLANTRTEKEVISDFREWVGD--AIFVAHNA-SFDMGFIDTAYNRHGFEK------ 527
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
S ++D + P+ S +L LA + H A D
Sbjct: 528 ---SHNAVIDTLEMSRFLHPNL----------KSHRLNTLAKRYNVALEQHHRAVYDAET 574
Query: 184 TLALVWL-IREK 194
T AL W+ I+E
Sbjct: 575 TGALAWIFIKEA 586
>gi|229172279|ref|ZP_04299843.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
gi|228611267|gb|EEK68525.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus MM3]
Length = 934
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRWAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 V------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|255037648|ref|YP_003088269.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
18053]
gi|254950404|gb|ACT95104.1| DNA polymerase III, epsilon subunit [Dyadobacter fermentans DSM
18053]
Length = 269
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 33/186 (17%)
Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITP 65
+D ET G ++ DR + + V+ TE+ + + +P P E+ I GI
Sbjct: 12 FFDLETTGVNIVRDRIVEISVVKALVN----GETEIRTRRINPE-MPIPLESSLIHGI-- 64
Query: 66 QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ V +A + + + + + G+N+ RFD F R D +D
Sbjct: 65 ---YDEDVKDAPTFKSVAKNLASFLEGCDLAGFNSNRFDIPMLVEEFLRVGVD-----FD 116
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N R +DV R + P + + + NAH A+AD A
Sbjct: 117 VKNRRM--VDVQRIYHMMEPRNLSAAYKFYCGKTL-------------NNAHSAEADTIA 161
Query: 184 TLALVW 189
T ++
Sbjct: 162 TFEVLQ 167
>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
Length = 1468
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 28/192 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G A D + A V++ + I+ E F + + +TGI
Sbjct: 452 TYVVFDVETTGLSTAYDTIIELAAVKI-KDGHVIDKYESFA---NPHHPLSATTIELTGI 507
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T VE + + H F I+ +N FD F Y +
Sbjct: 508 TDDMVRHAPEVE-QVIKEFHAFI---GDGIVVAHNASFD-----IGFLYTGYKKFGLEG- 557
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ ++D + P + +L L IE H A D A
Sbjct: 558 ---TTHPVIDTLELARLLYPT----------MKNHRLNTLCKKFNIELTQHHRAIYDTEA 604
Query: 184 T-LALVWLIREK 194
T L+ L+++
Sbjct: 605 TGYLLLQLLKDA 616
>gi|260101291|ref|ZP_05751528.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
gi|260084876|gb|EEW68996.1| ATP-dependent DNA helicase [Lactobacillus helveticus DSM 20075]
Length = 929
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 41/199 (20%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PE 56
+ F + D ET G QF I++ +V + + P P+
Sbjct: 8 DTFAVVDLETTGTQREKGHHIIQFGCA-------IIKNMKVVKTYSFMIN---PHREIPQ 57
Query: 57 AVF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+V +TGI + ++ + ++ +I + T + +N + FD + ++ Y
Sbjct: 58 SVVNLTGI-HNEDVQGKDDFSVYAPKIIEIL--KGTVFVAHN-VDFDLPFLNYELVQHGY 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ N D +++ + + P+ S+KL DL I+H+N H
Sbjct: 114 EALT------NKAIDTVELAKIAF---------PT----LPSYKLSDLTAQLKIKHLNPH 154
Query: 176 DAKADVYAT-LALVWLIRE 193
A +D Y T + L+ +I +
Sbjct: 155 KADSDAYGTAVLLIKIIHK 173
>gi|16803938|ref|NP_465423.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes EGD-e]
gi|224501301|ref|ZP_03669608.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes FSL R2-561]
gi|16411352|emb|CAC99977.1| dinG [Listeria monocytogenes EGD-e]
Length = 928
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|126462986|ref|YP_001044100.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
17029]
gi|126104650|gb|ABN77328.1| DNA polymerase III, epsilon subunit [Rhodobacter sphaeroides ATCC
17029]
Length = 695
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G + D Q A VR+ EV P + + GI
Sbjct: 495 TYVVFDTETTGLMPSQDEIVQIAAVRIVNGRRV--EAEVLDTLVNPHRPIPPSSTEVHGI 552
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + E RR H+F ++ +N FD + R +D
Sbjct: 553 T-DAMVAEAPDIVEVGRRFHKF--AEGAVLVAHNA-PFDMEFLRRA-----EPLIGRRFD 603
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
N +LD + S L L GI H A D
Sbjct: 604 NP-----ILDTVLLSAVLFGQS--------DVHS--LDALTHRIGITIPEEARHTAIGDT 648
Query: 182 YATL-ALVWLIREKKPKLFEYL 202
AT A + L+ + + FE
Sbjct: 649 VATADAFLKLLPMLQGRGFETF 670
>gi|319944217|ref|ZP_08018493.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
gi|319742512|gb|EFV94923.1| oligoribonuclease [Lautropia mirabilis ATCC 51599]
Length = 236
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 56/216 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
+ V D E G +DR + A V D + + V D L +A+
Sbjct: 55 SRLVWLDMEMTGLHPDIDRIIEVAMVVTDSELNLLAEGPVLAIHQPDTVL---DAMDKWN 111
Query: 59 -FITGIT--PQKALRDGVVEA-------EFSRRIHQFFSVPNTCIIGYNNIRFDDYYS-R 107
G + + + EA EF R C N+I D + R
Sbjct: 112 QSTHGKSGLIDRVRASTLTEAAAQGILLEFIRAWAPE-GKSPMCG---NSIGQDRRFMAR 167
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+ SW + + D+ + ++P+ + SFK
Sbjct: 168 YM-------PELESWFHYRN-LDVSTLKELARRWAPEVYR---------SFK-------- 202
Query: 168 GIEHVNAHDAKADVYATLALVWLIREK------KPK 197
AH A AD+ ++ + R+ +P+
Sbjct: 203 ---KRGAHTALADIQESIDELRHYRQHFIGPAGQPR 235
>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 1433
Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 42/203 (20%), Positives = 69/203 (33%), Gaps = 34/203 (16%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
IT E + + + F +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVD---EVFKKFEKWMGDHTLVA--HNASFDMGFINVGFKKAGLE--- 521
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N ++D + P+ + +L L IE H A
Sbjct: 522 -KTKNP-----VIDTLELARFLFPE----------MKNHRLNTLCKKMDIELTQHHRAIY 565
Query: 180 DVYAT-LALVWLIREKKPKLFEY 201
D AT LV ++++ K FEY
Sbjct: 566 DTEATGYLLVKMLKDVIEKGFEY 588
>gi|330720662|gb|EGG98910.1| 3'-to-5' oligoribonuclease (orn) [gamma proteobacterium IMCC2047]
Length = 182
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
+H + D E G + D + A + D I VF
Sbjct: 4 ADHLIWVDLEMTGLEPDHDTIIEIATIVTDSDLNVIAEGPVF 45
>gi|310641367|ref|YP_003946125.1| DNA polymerase iii, epsilon subunit [Paenibacillus polymyxa SC2]
gi|309246317|gb|ADO55884.1| DNA polymerase III, epsilon subunit [Paenibacillus polymyxa SC2]
Length = 245
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 40/214 (18%), Positives = 64/214 (29%), Gaps = 38/214 (17%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
V++D ET G D F +RV I E F+ +P+ + +TGI
Sbjct: 61 VVFDLETTGFSAQHGDEILSFGAIRVVGD--VIMEKEQFYTLVNPRTEIPE-QITRLTGI 117
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + DG +H F S ++ + D + ++
Sbjct: 118 T--REMTDGAPP--LMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWKTSKVQLTHR-- 171
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+LD M P Q ++ L +L I H A D
Sbjct: 172 -------VLDTMMLAKWLEPQQHQ---------TYSLDELLAYQSIPIEGRHHALEDAKM 215
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
T KL+ K + L D+
Sbjct: 216 T-----------AKLWVAYVQEMLKRNVTNLADV 238
>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
Length = 1433
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 69/202 (34%), Gaps = 42/202 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + +V++D ET G + + A V+V E I+ E F P + +
Sbjct: 415 MEDTYVVFDVETTGLSAVYNTIIELAAVKVQGG-EIIDRFESFA---NPHEPLSPTIIDL 470
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTC----IIGYNNIRFDDYYSRNIFYRNFYD 116
TGIT + IH I+ +N FD + + + D
Sbjct: 471 TGITDDMVAD--------APEIHDVLKDFKAWCGNDILVAHNAAFDMAFLDAGYQKAGMD 522
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVN 173
N D L++ R +Y +FK L L IE V+
Sbjct: 523 KAA------NPVIDTLEMGRMLY----------------PTFKNYRLNTLCKKFNIELVS 560
Query: 174 AHDAKADVYATLALV-WLIREK 194
H A D AT L+ ++R+
Sbjct: 561 HHRAIYDAEATGHLLWKMVRDA 582
>gi|301300766|ref|ZP_07206950.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851616|gb|EFK79316.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 929
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 32/189 (16%)
Query: 9 DYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + D+ QF+ + + F + +P P V + +T K
Sbjct: 11 DLETTGPKQDGSDKIIQFSC-----DFVQSNKIVNHFSTLINPGMPIP--VEVKKLTGIK 63
Query: 68 ALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
E + I+ NT + +N + FD + + R Y
Sbjct: 64 DKDVRYAPYFDEVAGTIYAMLQ--NTTFVAHN-VNFDYSFLSSELERAGYPELELP---- 116
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
++D ++ P S++L D++ + H++ H A +D AT
Sbjct: 117 -----MMDTVQLTQIIYPTL----------VSYRLIDISKYLQLSHIHPHKADSDTKATA 161
Query: 186 ALVWLIREK 194
L+ ++++
Sbjct: 162 ELLINLKKR 170
>gi|300310766|ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1]
gi|300073551|gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein [Herbaspirillum
seropedicae SmR1]
Length = 189
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFIT 61
+ + D E G D DR + A V D + + V +D+ L D
Sbjct: 15 NLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELLDGMDAWNKGTH 74
Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV 88
G + + V EA+ ++I +F
Sbjct: 75 GRSGLIDRVKASTVTEADAEKQIIEFLKQ 103
>gi|148656033|ref|YP_001276238.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
gi|148568143|gb|ABQ90288.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
Length = 956
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 32/184 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M ++ D ET G + +D + A V+ + ++ T +P LP + +
Sbjct: 1 MNQIYIAIDVETTGLEAGVDEIIEIAAVKFNAD--EVLETFSTLVQPV-HSLP-LNSSRL 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT L AE + R F ++G+N + FD R R ++
Sbjct: 57 TGIT-ADMLASAPRFAEVAPRFAAFLKNYP--LVGHN-VEFDLRMLRAQGMRLPQPAF-- 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
D P +++L LA GI H AH A +D
Sbjct: 111 ------------DTFELATLLMPR----------TPAYRLSALAATLGIHHDEAHRALSD 148
Query: 181 VYAT 184
T
Sbjct: 149 ADVT 152
>gi|254827216|ref|ZP_05231903.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
gi|258599599|gb|EEW12924.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N3-165]
Length = 928
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|219850553|ref|YP_002464986.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
9485]
gi|219544812|gb|ACL26550.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
9485]
Length = 233
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 44/195 (22%), Positives = 69/195 (35%), Gaps = 26/195 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D V V+ ++ T +P P E++ + +TP++
Sbjct: 42 DVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLTPEE- 100
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY-SRNIFYRNFYDSYRWSWDNGNS 127
LRD AE + + I G + R F + G
Sbjct: 101 LRDAPPPAEVLAELLRL-------IAGRVLVVHVAEIDVR--FINAALKPF-----GGRL 146
Query: 128 RWDLLDVMRAIYAFSPDGIQW----PSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
R +LD R + QW P RD A + +L+ L A G+ H+A D
Sbjct: 147 RRPILDTARLAMTLHLNA-QWLGELP-RDMPAPAVELRGLTGALGLPIYAQHNALNDAVT 204
Query: 184 T----LALVWLIREK 194
T +A L+ ++
Sbjct: 205 TAQLFIAQATLLADQ 219
>gi|76789273|ref|YP_328359.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis A/HAR-13]
gi|255311354|ref|ZP_05353924.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276]
gi|255317655|ref|ZP_05358901.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 6276s]
gi|255348913|ref|ZP_05380920.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70]
gi|255503453|ref|ZP_05381843.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis 70s]
gi|255507132|ref|ZP_05382771.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis D(s)2923]
gi|76167803|gb|AAX50811.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis A/HAR-13]
gi|289525581|emb|CBJ15059.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis Sweden2]
gi|296435141|gb|ADH17319.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/150]
gi|296436069|gb|ADH18243.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9768]
gi|296436997|gb|ADH19167.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11222]
gi|296437930|gb|ADH20091.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/11074]
gi|296438861|gb|ADH21014.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis E/11023]
gi|297140430|gb|ADH97188.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis G/9301]
Length = 250
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G DV DR +FA +R +++I + F P E+ I I+
Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIR--FTFDEIIDSVEFLIHPERAV--SAESQKIHKIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
LRD E RI FF I+G+ ++ FD R
Sbjct: 65 -DAMLRDKPKFGEVFSRIKGFF-KERDHIVGH-HVGFDLQVLSQESERLGETLLP----- 116
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D +R Y SP+ L+ LA + H H A DV
Sbjct: 117 --KHHYVIDTLRLAKEYGDSPNN-------------SLEALARHFNVPHQGNHRAMKDVE 161
Query: 183 ATLALVWLIREK 194
+ + + ++
Sbjct: 162 MNVKVFKHLTKR 173
>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri
LC str. 95010]
gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
str. 95010]
Length = 1482
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 46/191 (24%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------ 59
V +D ET G LD +F + + + E ++ D L P+
Sbjct: 436 VFFDLETTGLSPELDEIIEFGAI--EYNLKTGERKKI-------DILIKPKTKLKAFTQK 486
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T IT + +E F ++I++ I+ +N FD F + +
Sbjct: 487 LTNITEKMLEDKPSIEQAF-KQINEIIKD---AILVAHNANFD-----FTFLSYWSEKLG 537
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AH-- 175
+ N+ D L + R IY PD S +L LA I + AH
Sbjct: 538 Y-GKLENTIIDTLTISRIIY---PDL----------KSHRLGSLAKRVNISYDPSIAHRG 583
Query: 176 ----DAKADVY 182
D AD+Y
Sbjct: 584 DYDADILADIY 594
>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Megasphaera genomosp. type_1 str. 28L]
gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Megasphaera genomosp. type_1 str. 28L]
Length = 869
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 33/196 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+++D E+ G + D Q A V R D I+ + + +P+ + D A I
Sbjct: 499 SLIVFDVESTGTNPLQDEIIQIAAVRLRTDG---TIQEKFMTYLRPSR-TVGDSYA--IH 552
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
G++ + ++G +RR Q F ++ I+G+N + +D ++ R
Sbjct: 553 GLSDEFLQKNGTD----ARRALQNFLTFAKDSLIVGHNVL-YDISILQSELSR-LSLPCP 606
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D LD+ R Y PD + + L+ L+ H +H+A
Sbjct: 607 TEMP----YMDTLDIYRRFY---PDLEK----------YTLEFLSHHFSTAHKPSHNAWD 649
Query: 180 DVYATLALVWLIREKK 195
D+ AT L+ + ++K
Sbjct: 650 DILATADLLQTVLQEK 665
>gi|238757512|ref|ZP_04618697.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
gi|238704274|gb|EEP96806.1| Oligoribonuclease [Yersinia aldovae ATCC 35236]
Length = 181
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|224500250|ref|ZP_03668599.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes Finland 1988]
gi|254831500|ref|ZP_05236155.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes 10403S]
Length = 928
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|126337228|ref|XP_001369775.1| PREDICTED: similar to TBC1 domain family, member 8 [Monodelphis
domestica]
Length = 1133
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 63/214 (29%), Gaps = 32/214 (14%)
Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL--VH-VSGMF---------GASRSNT 237
L + + F + K +L +++D TP H V MF
Sbjct: 278 LEARAQNEFFRAFFRLPRKEKLHEVVDCSLWTPFSRCHTVGRMFASDSYVCFASKEDGCC 337
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP------ 291
++ P+ V+ D + + + + ++ ELK +
Sbjct: 338 NVVLPL-------REVVSIEKMEDTSLLPNPIIISIRSKMAFQFIELKDRESLVENLLMR 390
Query: 292 IKEVHLNKCPILMPIDYCKKEH-FERWGIDHKRCLE-NLTLLRQQTNLRDRFKAIYNKPY 349
+K+VH N + + E C + N L+ N K P
Sbjct: 391 LKQVHANS---VAHYKTLRNEDTTSALFQSTSMCNDSNFGTLKMSPNGNKVDKESSPLPN 447
Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQ 383
+ + V Q G + R ++I +
Sbjct: 448 SEALIAVFHQ--SGIQSPDSRMSREQIKASLWSD 479
>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
seeligeri FSL S4-171]
Length = 1444
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD + + +
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLGWKLIKDAK 592
>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
seeligeri FSL N1-067]
Length = 1452
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 435 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 490
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD + + +
Sbjct: 491 TDD--MVKGSDPIDVVLKRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------K 540
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 541 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 584
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 585 AEATAYLGWKLIKDAK 600
>gi|308186683|ref|YP_003930814.1| ribonuclease T [Pantoea vagans C9-1]
gi|308057193|gb|ADO09365.1| ribonuclease T [Pantoea vagans C9-1]
Length = 222
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + E +I+ T F +P L PEA+ TGI P
Sbjct: 23 DVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + S N I+ +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
seeligeri serovar 1/2b str. SLCC3954]
gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
seeligeri serovar 1/2b str. SLCC3954]
Length = 1444
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 34/196 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ ++D ET G D + AGV++ + E I+ E F + + +TGI
Sbjct: 427 TYCVFDVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGI 482
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G + + + +S + + +N FD + + +
Sbjct: 483 TDD--MVKGSDPIDVVLKRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------K 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKAD 180
N+ D L++ R +Y FK L L I H A D
Sbjct: 533 AENAVVDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFD 576
Query: 181 VYATLALV-WLIREKK 195
AT L LI++ K
Sbjct: 577 AEATAYLGWKLIKDAK 592
>gi|229597251|ref|YP_001908888.2| oligoribonuclease [Erwinia tasmaniensis Et1/99]
Length = 187
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N+ + D E G + DR + A + D + VF
Sbjct: 5 ANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVF 46
>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 1555
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 48/205 (23%), Positives = 70/205 (34%), Gaps = 53/205 (25%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D IE DY+
Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIE---------NQDYIIK 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDY 104
PE A I GIT + A +G + I + FS + G+N + FD
Sbjct: 53 PEGYDIPFNAARIHGITTKIANEEGRD----LQEILEEFSKVLEKVRVVSGHN-VEFDYN 107
Query: 105 YSRNIFYR-NFYDSYRWSWDNGNSRWDLLDVMRAIYAF---SPDGIQWPSRDDGATSFKL 160
FYR N D+ + + D + + + P KL
Sbjct: 108 IVGAEFYRKNLKDNL---QEKP--KADTMILGADFCQLGGGRGGRFKPP---------KL 153
Query: 161 QDLALAN-GIEHVNAHDAKADVYAT 184
++L G + AH+A ADV AT
Sbjct: 154 EELYEKLYGSKFDEAHNAAADVNAT 178
>gi|310765341|gb|ADP10291.1| Oligoribonuclease [Erwinia sp. Ejp617]
Length = 187
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N+ + D E G + DR + A + D + VF
Sbjct: 5 ANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVF 46
>gi|241896118|ref|ZP_04783414.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
gi|241870632|gb|EER74383.1| DNA-directed DNA polymerase III epsilon subunit [Weissella
paramesenteroides ATCC 33313]
Length = 970
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 29/187 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQK 67
D ET R Q A + + + I +P V +TGI +
Sbjct: 38 DLETTRTTSESGRIIQIA-IAFVQNKKIINQFSTL---INPHESIPR-NVVQLTGINAEM 92
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E E + IH + T + +N + FD + F R ++
Sbjct: 93 VAGAPSFE-EVAESIHTMLT--GTIFVAHN-VNFDLPFLNAEFQRIGMNTLNLV------ 142
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
+D + I WP+ F+L DL + H H A +D AT L
Sbjct: 143 ---AIDTVTL------SQIVWPTA----PGFRLVDLTSYLALVHGRPHQADSDALATAEL 189
Query: 188 VWLIREK 194
+ I +
Sbjct: 190 LIQIFNR 196
>gi|262194253|ref|YP_003265462.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077600|gb|ACY13569.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 25/190 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
V D ET G D + A +RV + + E T V +P +D DPEA+ + G
Sbjct: 4 LVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERTLVLRVRPERLEDA--DPEALEVNG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
Q+ D V E + + G+N + FD + W +
Sbjct: 62 Y-HQRVWVDAVSLDEALAELAPML--EGAVLAGHN-VAFDRRFL----------EAAWDY 107
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
+A + +P G S L + G+ H A DV
Sbjct: 108 VGHR------PENLDHHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161
Query: 182 YATLALVWLI 191
A L + +
Sbjct: 162 RACLGVARRL 171
>gi|161507623|ref|YP_001577577.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
gi|160348612|gb|ABX27286.1| ATP-dependent DNA helicase DinG [Lactobacillus helveticus DPC 4571]
Length = 927
Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/199 (19%), Positives = 79/199 (39%), Gaps = 41/199 (20%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PE 56
+ F + D ET G QF I++ +V + + P P+
Sbjct: 8 DTFAVVDLETTGTQREKGHHIIQFGCA-------IIKNMKVVKTYSFMIN---PHHEIPQ 57
Query: 57 AVF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+V +TGI + ++ + ++ +I + T + +N + FD + ++ Y
Sbjct: 58 SVVNLTGI-HNEDVQGKDDFSVYAPKIIEIL--KGTVFVAHN-VDFDLPFLNYELVQHGY 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ N D +++ + + P+ S+KL DL I+H+N H
Sbjct: 114 EALT------NKAIDTVELAKIAF---------PT----LPSYKLSDLTAQLKIKHLNPH 154
Query: 176 DAKADVYAT-LALVWLIRE 193
A +D Y T + L+ +I +
Sbjct: 155 KADSDAYGTAVLLIKIIHK 173
>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E980]
gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E980]
Length = 1450
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-GTILVAHNA-AFDMGFLNTSYARYGIPEAA- 531
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 532 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
Length = 1450
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-GTILVAHNA-AFDMGFLNTSYARYGIPEAA- 531
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 532 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|119946941|ref|YP_944621.1| oligoribonuclease [Psychromonas ingrahamii 37]
gi|119865545|gb|ABM05022.1| Exonuclease, RNase T and DNA polymerase III [Psychromonas
ingrahamii 37]
Length = 179
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
N+ V D E G + D+ + A + D +
Sbjct: 4 NNLVWIDLEMTGLNPDTDKIIEIATIVTDSDLNIL 38
>gi|226224503|ref|YP_002758610.1| ATP-dependent helicase [Listeria monocytogenes Clip81459]
gi|254825606|ref|ZP_05230607.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
gi|225876965|emb|CAS05674.1| Putative ATP-dependent helicase [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|293594849|gb|EFG02610.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL J1-194]
gi|328466248|gb|EGF37405.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes 1816]
Length = 928
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|46908132|ref|YP_014521.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes serotype 4b str. F2365]
gi|46881402|gb|AAT04698.1| ATP-dependent helicase DinG [Listeria monocytogenes serotype 4b
str. F2365]
Length = 928
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|328957363|ref|YP_004374749.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Carnobacterium sp. 17-4]
gi|328673687|gb|AEB29733.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Carnobacterium sp. 17-4]
Length = 940
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 47/227 (20%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+ + + D ET G +V DR QF V ++ + + P P+ +
Sbjct: 8 DTYAVVDIETTGGNVTSGDRMIQFGCVLIEDD-KIVHRFAT-TVNPLTSI---PKQIEHL 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TG++ + E + + I+ CII +NI+FD + R + +
Sbjct: 63 TGLSNKSVALAPYFE-DVAATIYNLLED---CIIVAHNIQFDYIFLSGELQRCGMPALKN 118
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + P +S++L DL IEH N H A +D
Sbjct: 119 KG---------IDTVELAQILLPTE----------SSYRLNDLVSKFNIEHTNPHQADSD 159
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVS 227
T L + +NK + L+ ++ M V +S
Sbjct: 160 AAVTAEL--------------FLELKNKLKELPLVTVEKM---VEIS 189
>gi|298372076|ref|ZP_06982066.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
gi|298274980|gb|EFI16531.1| exonuclease [Bacteroidetes oral taxon 274 str. F0058]
Length = 252
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 45/218 (20%), Positives = 76/218 (34%), Gaps = 38/218 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVF 59
+ N V +D ET G +V+ DR + ++V+ K T K + +P+ ++
Sbjct: 5 LKNPIVFFDLETTGINVSTDRIVELTYLKVEPNGNKTSKTI----KINPEMHIPE-QSSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I GI Q R+I + + G+N++ FD F R D
Sbjct: 60 IHGIYDQDVAD-----CPTFRQIAANLAKDIEGCDLAGFNSVNFDIPLLVEEFLRVGVDI 114
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+DVM Y P + + + NAH +
Sbjct: 115 DLKKRK-------FVDVMVIFYKKEPRNLAAAYKFYCDKTL-------------ENAHSS 154
Query: 178 KADVYATLALVWLIREKKPKL---FEYL--YDYRNKNQ 210
+AD AT ++ K P L ++L + NK+
Sbjct: 155 EADTLATFEILEEQLNKYPDLENSVDFLSEFSSHNKHA 192
>gi|149041580|gb|EDL95421.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_e
[Rattus norvegicus]
Length = 113
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90
>gi|149041581|gb|EDL95422.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_f
[Rattus norvegicus]
Length = 154
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90
>gi|123440753|ref|YP_001004745.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|166216592|sp|A1JIQ8|ORN_YERE8 RecName: Full=Oligoribonuclease
gi|122087714|emb|CAL10499.1| oligoribonuclease [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 181
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|26355291|dbj|BAC41132.1| unnamed protein product [Mus musculus]
Length = 121
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M V D E G D+ D+ + A + D + K D+ L
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90
>gi|90961663|ref|YP_535579.1| ATP-dependent helicase DinG [Lactobacillus salivarius UCC118]
gi|90820857|gb|ABD99496.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius
UCC118]
Length = 929
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 32/189 (16%)
Query: 9 DYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + D+ QF+ + + F + +P P V + +T K
Sbjct: 11 DLETTGPKQDGSDKIIQFSC-----DFVQSNKIVNHFSTLINPGMPIP--VEVKKLTGIK 63
Query: 68 ALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
E + I+ NT + +N + FD + + R Y
Sbjct: 64 DKDVRYAPYFDEVAGTIYAMLQ--NTTFVAHN-VNFDYSFLSSELERAGYPELELP---- 116
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
++D ++ P S++L D++ + H++ H A +D AT
Sbjct: 117 -----MMDTVQLTQIIYPTL----------VSYRLIDISKYLQLSHIHPHKADSDTKATA 161
Query: 186 ALVWLIREK 194
L+ ++++
Sbjct: 162 ELLINLKKR 170
>gi|254931930|ref|ZP_05265289.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
gi|293583482|gb|EFF95514.1| ATP-dependent helicase DinG [Listeria monocytogenes HPB2262]
Length = 928
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|332637692|ref|ZP_08416555.1| DNA polymerase III PolC [Weissella cibaria KACC 11862]
Length = 1440
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 27/185 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV++D ET G D+ + + V++ + I F + V +T IT
Sbjct: 424 FVVFDVETTGLSAVYDKVIELSAVKMVKG-NVIAEFSEF---IDPGFPLSQTTVDLTSIT 479
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+R E + +F+ ++G+N + FD + + + R+ N
Sbjct: 480 -DDMVRGSKPEKQVFEEFREFYGD--AVLVGHN-VTFDMGFMQEGYARHQLAPI----TN 531
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ S++L LA GI H A D T
Sbjct: 532 P-----VIDTLILARFLYPN----------MRSYRLNTLAKHFGIVLEQHHRAIFDSETT 576
Query: 185 LALVW 189
L
Sbjct: 577 GHLNR 581
>gi|241759454|ref|ZP_04757558.1| oligoribonuclease Orn [Neisseria flavescens SK114]
gi|241320236|gb|EER56569.1| oligoribonuclease Orn [Neisseria flavescens SK114]
Length = 185
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
N+ D E G + DR + A + D + ++V+ +D+ L D
Sbjct: 5 ANNLCWLDMEMTGLNPEHDRIIEVAMIITDSNLNVLAQSDVYVIHQSDELLNGMDEWNTT 64
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ + EAE + + F S
Sbjct: 65 THGRTGLTQRVRESKLTEAEVEQNLLGFMSAW 96
>gi|237802965|ref|YP_002888159.1| DNA polymerase III subunit epsilon [Chlamydia trachomatis
B/Jali20/OT]
gi|231274199|emb|CAX10993.1| DNA polymerase III, epsilon chain [Chlamydia trachomatis
B/Jali20/OT]
Length = 250
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G DV DR +FA +R +++I + F P E+ I I+
Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIR--FTFDEIIDSVEFLIHPERAV--SAESQKIHKIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
LRD E RI FF I+G++ + FD R
Sbjct: 65 -DAMLRDKPKFGEVFSRIKGFF-KERDHIVGHH-VGFDLQVLSQESERLGETLLP----- 116
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D +R Y SP+ L+ LA + H H A DV
Sbjct: 117 --KHHYVIDTLRLAKEYGDSPNN-------------SLEALARHFNVPHQGNHRAMKDVE 161
Query: 183 ATLALVWLIREK 194
+ + + ++
Sbjct: 162 MNVKVFKHLTKR 173
>gi|254852803|ref|ZP_05242151.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
gi|300763791|ref|ZP_07073788.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
gi|258606130|gb|EEW18738.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL R2-503]
gi|300515527|gb|EFK42577.1| ATP-dependent helicase DinG [Listeria monocytogenes FSL N1-017]
Length = 928
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|30387346|ref|NP_848425.1| hypothetical protein CfMNPVgpORF114 [Choristoneura fumiferana MNPV]
gi|30270080|gb|AAP29896.1| unknown [Choristoneura fumiferana MNPV]
Length = 232
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 64/225 (28%), Gaps = 50/225 (22%)
Query: 3 NHFVIYDYETFGR---DVALDRP----AQF---------AGVRVDRQWEKIESTEVFFCK 46
+V D ET G + Q VRV + + +
Sbjct: 5 QTYVFLDLETTGLPKFQNNKTQITELSLQCVSRKELLRPGAVRVCNKLTMCFEPTLSISE 64
Query: 47 PADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDY 104
EA+ +T ++ + + + I F S C++ YN + FD
Sbjct: 65 ---------EALALTQLSMENLNGQPKFDTKVVDCIESFLSLLASPVCLVAYNGLSFDFP 115
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRA--------IYAFSPDGIQ------WPS 150
Y++ D+ ++ D M A S G+ W
Sbjct: 116 I----LYKHLKDN---AFQLEVHCADAYHAMYAIIDGSGSTAMNRSKSGLVTVRQCPWKR 168
Query: 151 RDDGATSFKLQDL--ALANGIEHVNAHDAKADVYATLALVWLIRE 193
D A SFKL DL + H A+ D + L
Sbjct: 169 GDRPARSFKLMDLYKTHVTQLAGDKCHRAENDCSMMVELAKKFAN 213
>gi|332312340|gb|EGJ25435.1| ATP-dependent helicase [Listeria monocytogenes str. Scott A]
Length = 931
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 9 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 63 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 114
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 115 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 159
Query: 182 YAT 184
T
Sbjct: 160 EVT 162
>gi|188030133|emb|CAO98019.1| Oligoribonuclease [Erwinia tasmaniensis Et1/99]
Length = 193
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N+ + D E G + DR + A + D + VF
Sbjct: 11 ANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVF 52
>gi|86130357|ref|ZP_01048957.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
gi|85819032|gb|EAQ40191.1| DNA polymerase III, epsilon subunit [Dokdonia donghaensis MED134]
Length = 466
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 30/204 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G+ + +R +F VR+ + E I+ + Y+P P +TGI
Sbjct: 13 DVETTGKGINGNRITEFCAVRL-KDGEIIDKFTSLVN--PEQYIP-PFITNLTGIDDAMV 68
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ E E ++R+ + + +N + FD + F R R
Sbjct: 69 EDAPLFE-EIAQRVLEI--TEGAIFVAHN-VNFDFNVIKGEFKRLGVSFVRKK------- 117
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
L +R P+ S+ L +L + GI N H A+ D AT+ L
Sbjct: 118 ---LCTVRLSRKLIPNLF----------SYSLGNLCASIGIPLNNRHRAEGDTDATVILF 164
Query: 189 WLI--REKKPKLFEYLYDYRNKNQ 210
+ ++ K+ + R+K
Sbjct: 165 KRLLDLDEGKKVMNAFLNVRSKEA 188
>gi|259907169|ref|YP_002647525.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
gi|224962791|emb|CAX54246.1| Oligoribonuclease [Erwinia pyrifoliae Ep1/96]
gi|283476976|emb|CAY72863.1| oligoribonuclease [Erwinia pyrifoliae DSM 12163]
Length = 193
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N+ + D E G + DR + A + D + VF
Sbjct: 11 ANNLIWIDLEMTGLNPEQDRIIEIATLVTDADLNILAEGPVF 52
>gi|42780745|ref|NP_977992.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus cereus ATCC 10987]
gi|42736665|gb|AAS40600.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
cereus ATCC 10987]
Length = 934
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|319760221|ref|YP_004124159.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
gi|318038935|gb|ADV33485.1| oligoribonuclease [Candidatus Blochmannia vafer str. BVAF]
Length = 182
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
M + + D E G + DR + A + D + +
Sbjct: 1 MDKNLIWIDLEMTGLNPEKDRIIEIATLITDSELNIL 37
>gi|317049763|ref|YP_004117411.1| exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
gi|316951380|gb|ADU70855.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. At-9b]
Length = 182
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 7 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 43
>gi|157373929|ref|YP_001472529.1| oligoribonuclease [Shewanella sediminis HAW-EB3]
gi|157316303|gb|ABV35401.1| exonuclease, RNase T and DNA polymerase III [Shewanella sediminis
HAW-EB3]
Length = 181
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D ++DR + A + D++ +
Sbjct: 5 ANNLIWVDLEMTGLDPSVDRVIEIATIVTDKELNILAE 42
>gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL
2338]
gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea
NRRL 2338]
Length = 572
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 62/190 (32%), Gaps = 37/190 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G A D + V+V E + + P D P V ITGI
Sbjct: 24 TFVVVDLETTGGSNAQDAVTEIGAVKVRGG-EVVGEFQTL-VDPERDIPPS--VVTITGI 79
Query: 64 TPQKALR----DGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T D V+ A EF R + ++ +N FD + R R
Sbjct: 80 TEAMVRDAPRLDSVLPAFLEFCR---------GSVLVAHNA-PFDTGFLRAGCERLGL-- 127
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
RW V+ + D +++L LA G H A
Sbjct: 128 ----------RWPKPKVVCTVRLARR-----VLTRDETPNYRLGTLAGVLGARTEPVHRA 172
Query: 178 KADVYATLAL 187
D AT+ +
Sbjct: 173 LDDARATVDV 182
>gi|157963361|ref|YP_001503395.1| oligoribonuclease [Shewanella pealeana ATCC 700345]
gi|157848361|gb|ABV88860.1| Exonuclease RNase T and DNA polymerase III [Shewanella pealeana
ATCC 700345]
Length = 181
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N+ + D E G + +DR + A + D++ I VF +D+ L A+
Sbjct: 6 NNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAQGPVFAIHQSDEQL----ALMDDW 61
Query: 60 ---ITGIT--PQKALRDGVVEAEFSRRIHQFFSV 88
G + + + E + F S
Sbjct: 62 NQKHHGQSGLVDRVRASTINEEQAIAETIAFLSQ 95
>gi|148656137|ref|YP_001276342.1| DNA polymerase III subunit epsilon [Roseiflexus sp. RS-1]
gi|148568247|gb|ABQ90392.1| DNA polymerase III, epsilon subunit [Roseiflexus sp. RS-1]
Length = 233
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 17/191 (8%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + D V +D +++ +P DD +PEA+ + G+ PQ
Sbjct: 42 DVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLLPQDV 101
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ + + + +I F R ++ +
Sbjct: 102 EQAPPPGDVLPVLLRRLTGRVLVVHVADIDIGFLRQALRRLYQVDPRGP----------- 150
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT--LA 186
+D R + F + + D + +L+ LA + G+ H+A D T +
Sbjct: 151 --AIDTARLAWHFQRNQ-RLIDGADQEPALQLRALAESAGLPVYAEHNALNDALTTAQVF 207
Query: 187 LVWLIREKKPK 197
L I +P
Sbjct: 208 LAQ-INAMQPN 217
>gi|300858286|ref|YP_003783269.1| hypothetical protein cpfrc_00868 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685740|gb|ADK28662.1| hypothetical protein cpfrc_00868 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206006|gb|ADL10348.1| DNA polymerase III subunit epsilon [Corynebacterium
pseudotuberculosis C231]
gi|302330559|gb|ADL20753.1| DNA polymerase III subunit epsilon [Corynebacterium
pseudotuberculosis 1002]
gi|308276241|gb|ADO26140.1| DNA polymerase III subunit epsilon [Corynebacterium
pseudotuberculosis I19]
Length = 232
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 61/194 (31%), Gaps = 32/194 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET + R A VR+D P + +P+ EA + GIT +
Sbjct: 19 FDLETTSANPHEARIVSSALVRIDSNG---AHPRELLADPGIE-IPE-EAAKVHGITTEY 73
Query: 68 ALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A G E I Q ++ T I+ N +D R +
Sbjct: 74 AREHGRPHEEVLKETIAAIQQAWADGFTLIV--YNAAYDLTVLRKL-------------- 117
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D + F P I L DL + NAH+A +D A
Sbjct: 118 ----TGDF---VVTGPVFDPYVIDKALDKFRRGKRTLTDLCQHYNVRLDNAHEATSDALA 170
Query: 184 TLALVWLIREKKPK 197
+ W+ ++ K
Sbjct: 171 AARIAWMQAKRNFK 184
>gi|288560027|ref|YP_003423513.1| exonuclease [Methanobrevibacter ruminantium M1]
gi|288542737|gb|ADC46621.1| exonuclease [Methanobrevibacter ruminantium M1]
Length = 261
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 28/202 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVF 59
N + +D ET G + + + G+ V + IE +
Sbjct: 44 NRIIFFDTETSGLNPNYCKIIEL-GMLVIEDGKIIEEYDKLINIGERIDSTI------TR 96
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
ITGIT + +GV E + ++ + + T +I YN +FD ++ + R++ +
Sbjct: 97 ITGITNDMLIDEGVSEGDVAQDLKEKLI-SGTLMIAYN-CQFDLSFAYGLLKRHY--PHE 152
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +W P + K D I +VN H A
Sbjct: 153 AEAIIEDVKW-----------LDP--MTVFKDRKAYPH-KFSDAVEHYDIRNVNFHRAIG 198
Query: 180 DVYATLALVWLIREKKPKLFEY 201
D + +++++ L EY
Sbjct: 199 DAKGLYEVCLSLKDERDDLGEY 220
>gi|255522480|ref|ZP_05389717.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Listeria monocytogenes FSL J1-175]
Length = 807
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|227890026|ref|ZP_04007831.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
33200]
gi|227849470|gb|EEJ59556.1| possible ATP-dependent DNA helicase [Lactobacillus johnsonii ATCC
33200]
Length = 938
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKTYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNEDV-AKAHDFSYYAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAVDTVELAQIVFPT----------FPSYKLRDLTARLRIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|311741608|ref|ZP_07715431.1| epsilon subunit family exonuclease [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303272|gb|EFQ79352.1| epsilon subunit family exonuclease [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 221
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
F + D ET G + DR + A VR D + I+S D
Sbjct: 21 FAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTL---LNPD 63
>gi|194434740|ref|ZP_03066992.1| oligoribonuclease [Shigella dysenteriae 1012]
gi|194417021|gb|EDX33138.1| oligoribonuclease [Shigella dysenteriae 1012]
gi|320180678|gb|EFW55605.1| 3'-to-5' oligoribonuclease (orn) [Shigella boydii ATCC 9905]
gi|332083629|gb|EGI88847.1| exonuclease family protein [Shigella dysenteriae 155-74]
Length = 181
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D LDR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPELDRIIEIATLVTDANLNILAE 42
>gi|268319456|ref|YP_003293112.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
gi|262397831|emb|CAX66845.1| ATP-dependent DNA helicase DinG [Lactobacillus johnsonii FI9785]
Length = 938
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKTYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNEDV-AKAHDFSYYAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAVDTVELAQIVFPT----------FPSYKLRDLTARLRIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|268317061|ref|YP_003290780.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
gi|262334595|gb|ACY48392.1| putative sensor with HAMP domain [Rhodothermus marinus DSM 4252]
Length = 616
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 60/196 (30%), Gaps = 53/196 (27%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIE---STEVFFCKPADDYLP-DPEAVF 59
+ ++D ET G D VR + E F + + P ++V
Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVR------IVGGRIRPEETFDQLVNPRRPISLDSVR 475
Query: 60 ITGITPQKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IF 110
+ GI P +E F+R +T ++G+N + FD + R
Sbjct: 476 VHGIQPVLLQDKPPIEEVLPRFYRFAR---------DTVLVGHN-VAFDLKFIRQKEKAL 525
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
F LD M P+ + L +LA A GIE
Sbjct: 526 GLRFDQPV-------------LDTMLLAAVVDPE----------RQHYGLDELAAAFGIE 562
Query: 171 HVNAHDAKADVYATLA 186
V H A D T
Sbjct: 563 PVGRHSALGDALITAE 578
>gi|300775432|ref|ZP_07085294.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
35910]
gi|300506172|gb|EFK37308.1| DNA polymerase III, epsilon subunit [Chryseobacterium gleum ATCC
35910]
Length = 407
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 47/186 (25%), Positives = 68/186 (36%), Gaps = 28/186 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E+ G + A R D Q + + P D P + + T ITP+
Sbjct: 6 DIESNGAGYRNECIIDIAIYRYDGQ-KITDQFISL-VNPEGDITPFVQKL--TSITPKMV 61
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
E ++R+ + NT ++G+N I FD R F R YD +
Sbjct: 62 KTAPKFH-EIAKRVIEITQ--NTTLVGHN-IDFDYRMLRQSFKRLGYD----------FK 107
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
+ LD + PD S+ L L + GI N H A+ D ATL L
Sbjct: 108 INTLDTIPLAKKLIPDE----------VSYSLGKLVKSLGIPLTNHHRAEGDARATLELF 157
Query: 189 WLIREK 194
L+ K
Sbjct: 158 KLLISK 163
>gi|25027895|ref|NP_737949.1| DNA polymerase III subunit epsilon [Corynebacterium efficiens
YS-314]
gi|259506288|ref|ZP_05749190.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
YS-314]
gi|23493178|dbj|BAC18149.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166068|gb|EEW50622.1| DNA polymerase III, epsilon subunit [Corynebacterium efficiens
YS-314]
Length = 252
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 72/210 (34%), Gaps = 40/210 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPE-AVFIT 61
+ + +D ET + R A V + + P + PE A +
Sbjct: 36 NMLSFDLETTAANPFEARIVTSAMVTITNAG----ATPLELLADPGVEI---PEGATAVH 88
Query: 62 GITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
GIT + A G AE RRI + + I+ YN +D R +
Sbjct: 89 GITTEYAREHGQPHEEVLAETIRRIQEGWGNNQALIV-YNA-PYDLTVLRRL-------- 138
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+G+ D ++ Y D I+ P R T L DL ++ NAH+A
Sbjct: 139 ------SGDFTID--GLVYDPYTV--DRIKDPYRKGKRT---LADLCAHYEVQLGNAHEA 185
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRN 207
+D A I K+ +++ L
Sbjct: 186 TSDALA----AARIAWKQARIWPELATMSG 211
>gi|296333022|ref|ZP_06875479.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305674874|ref|YP_003866546.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. spizizenii str. W23]
gi|296149873|gb|EFG90765.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305413118|gb|ADM38237.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus subtilis subsp. spizizenii str. W23]
Length = 954
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 36/196 (18%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
FV+ D ET G D+ Q A V ++ +I + P +P A +T
Sbjct: 29 FVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNKS-IP---AFIEQLT 82
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ Q + EA + + + +N I FD + + ++ +
Sbjct: 83 GISNQMVEHEQPFEA-VAEEVFHLLD--GAYFVAHN-IHFDLGFVKYELHKAGFHLPDCE 138
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+LD + P G +KL +L+ + H H A +D
Sbjct: 139 ---------VLDTVELSRIVFP----------GFEGYKLTELSEELQLRHDQPHRADSDA 179
Query: 182 YAT----LALVWLIRE 193
T L ++ +R+
Sbjct: 180 EVTGLIFLEILEKLRQ 195
>gi|304397653|ref|ZP_07379530.1| ribonuclease T [Pantoea sp. aB]
gi|304354825|gb|EFM19195.1| ribonuclease T [Pantoea sp. aB]
Length = 222
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + E +I+ T F +P L PEA+ TGI P
Sbjct: 23 DVETAGFNAQTDALLEIAAITLKMDEEGWIQIDQTLHFNVEPFVGSLLHPEALAFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + S N I+ +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKMVRKGIKDSGCNRAIMVAHNATFDLNFMSAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
Length = 892
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 33/198 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI- 63
V++D ET G DV D + + +++ R ++I T + LP GI
Sbjct: 510 IVVFDTETTGLDVFNDDIIEISAIKI-RNGKQIGKTLDLYIYTDKTILPKL------GIK 562
Query: 64 -TP-QKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
P + + + E +++F + I+ +NI +D + N R D+
Sbjct: 563 DNPLYEIYNEKLNSGELINIKEALNEFLKFADNSILMAHNINYDYHILDNCLRRYTGDNL 622
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+N N ++ D ++ I P S+KL+ L +E VN+H A
Sbjct: 623 ----NNYNFKY--FDSLKIIRLLEPSL----------RSYKLEHLLDKFQLEGVNSHQAI 666
Query: 179 ADVYATLAL----VWLIR 192
DV+AT+ L ++
Sbjct: 667 DDVWATVNLINYCAKRVK 684
>gi|332083162|gb|EGI88393.1| exonuclease family protein [Shigella boydii 5216-82]
Length = 181
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D LDR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPELDRIIEIATLVTDANLNILAE 42
>gi|301053179|ref|YP_003791390.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
gi|300375348|gb|ADK04252.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
CI]
Length = 934
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
YUAN-3]
gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense
YUAN-3]
Length = 1457
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 34/184 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAV 58
+ FV +D ET G + DR + VR+ +I F KP P
Sbjct: 440 SGEFVAFDLETTGLNRENDRITEIGAVRIRNG--EIGERFDLFVNPHKPIP-----PRIT 492
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGIT ++D E E R+ FF+ ++ +N FD + R R +
Sbjct: 493 ELTGIT-DDMVKDAAEEDEALRQ---FFAFCGDAVLVAHNAEFDTGFCRAAAARCGM-EF 547
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+++ +D + P G ++KL +A + N H A
Sbjct: 548 PYTY---------MDSIPLCRTVLP----------GLKNYKLDTVAGGLHLPPFNHHRAS 588
Query: 179 ADVY 182
D +
Sbjct: 589 DDAF 592
>gi|228984721|ref|ZP_04144893.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228774919|gb|EEM23313.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 934
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|229121184|ref|ZP_04250421.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
95/8201]
gi|228662303|gb|EEL17906.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
95/8201]
Length = 934
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|261408383|ref|YP_003244624.1| hypothetical protein GYMC10_4596 [Paenibacillus sp. Y412MC10]
gi|261284846|gb|ACX66817.1| DNA polymerase III, epsilon subunit [Paenibacillus sp. Y412MC10]
Length = 246
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 27/194 (13%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D ET G + D F +RV + ++ E F P +TGIT
Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAIRVIGE--QVIENETFHMIVNSGAPVSPFIAELTGIT 119
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
Q + D +H F + ++ + D R F ++ W
Sbjct: 120 QQ--MVDAAPP--LMEGLHDFMAFIGGRVLVAHAAAHD---------RGFLNAALWKTSK 166
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
LLD M P+ + L +L ++GI H A +D T
Sbjct: 167 VRLTHRLLDTMMLAQRLYPE----------QKDYSLDELLRSSGIPVEGRHHALSDARMT 216
Query: 185 LAL-VWLIREKKPK 197
L +++ + +
Sbjct: 217 ARLWADYMKDIQAR 230
>gi|49477263|ref|YP_035758.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|196033564|ref|ZP_03100976.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus W]
gi|218902753|ref|YP_002450587.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus AH820]
gi|49328819|gb|AAT59465.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|195993998|gb|EDX57954.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus W]
gi|218538657|gb|ACK91055.1| putative DnaQ family exonuclease/DinG family helicase [Bacillus
cereus AH820]
Length = 934
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|52143806|ref|YP_083022.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus cereus E33L]
gi|51977275|gb|AAU18825.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
Length = 934
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium PC4.1]
gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium PC4.1]
Length = 1450
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-GTILVAHNA-AFDMGFLNTSYARYGIP---- 528
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 529 EATNP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
Length = 1450
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-GTILVAHNA-AFDMGFLNTSYARYGIP---- 528
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 529 EATNP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|228964616|ref|ZP_04125724.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228795047|gb|EEM42545.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 365
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|15618565|ref|NP_224851.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
CWL029]
gi|15836187|ref|NP_300711.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae J138]
gi|16752385|ref|NP_444644.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae AR39]
gi|33242012|ref|NP_876953.1| DNA polymerase III subunit epsilon [Chlamydophila pneumoniae
TW-183]
gi|4376954|gb|AAD18794.1| DNA Polymerase III Epsilon Chain [Chlamydophila pneumoniae CWL029]
gi|8163364|gb|AAF73628.1| DNA polymerase III, epsilon subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8979027|dbj|BAA98862.1| DNA polymerase III epsilon chain [Chlamydophila pneumoniae J138]
gi|33236522|gb|AAP98610.1| DNA polymerase III [Chlamydophila pneumoniae TW-183]
Length = 249
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 83/243 (34%), Gaps = 44/243 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F D E G DV DR + A VR I S E + + E+ + I+
Sbjct: 9 FTCLDCEMTGLDVKKDRIIEIAAVRFTFD-SVISSIEFL---INPERVVSAESQRVHHIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ AE +I FF I+G+ ++ FD +
Sbjct: 65 NAMLRDQPKI-AEVFPQIKAFF-KEGDYIVGH-SVGFDLQVL--------AQEMERIGET 113
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S++ ++D +R Y SP+ L+ LA+ + + H A DV
Sbjct: 114 FLSKYTIIDTLRLAKEYGDSPNN-------------SLESLAVHFNVPYDGNHRAMKDVE 160
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAP 242
+ + + ++ F L K L K I ++ M PL G + P
Sbjct: 161 ININIFKHLCKR----FRTLEQL--KQVLAKPIKMKYM-PL-------GKHKGRCFSEIP 206
Query: 243 VAW 245
+A+
Sbjct: 207 LAY 209
>gi|115352016|ref|YP_773855.1| exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
AMMD]
gi|115282004|gb|ABI87521.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia ambifaria
AMMD]
Length = 180
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 33/204 (16%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL-PDPE 56
M ++ F+ D ET G +F + + + + F C+ DP+
Sbjct: 1 MKSNREVFLSVDVETSGPIPG-----EF-SLLTIGACDVFDPQQTFSCELKPTTRNADPK 54
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQF-FSVPN----TCIIGYNNIRFDDYYSRNIFY 111
A+ +TG++ + RDG+ ++ + S +G+N FD + F+
Sbjct: 55 ALEVTGLSLDRLERDGLDPVVGMQKFRDWVISTAGPDATPVFVGFNA-PFDWSFVNYYFH 113
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
R Y G + D+ + S W + +A A
Sbjct: 114 R-----YLGENPFGFAALDIKSMYMGAARSS-----WAQT-------RSSQIAAALNPTL 156
Query: 172 VNAHDAKADVYATLALVWLIREKK 195
HDA D L LI+++K
Sbjct: 157 KGDHDALHDAQYQAELFRLIQQRK 180
>gi|304396962|ref|ZP_07378842.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
gi|308188276|ref|YP_003932407.1| oligoribonuclease [Pantoea vagans C9-1]
gi|304355758|gb|EFM20125.1| Exonuclease RNase T and DNA polymerase III [Pantoea sp. aB]
gi|308058786|gb|ADO10958.1| oligoribonuclease [Pantoea vagans C9-1]
Length = 182
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D DR + A + D +
Sbjct: 7 QNLIWIDLEMTGLDPTHDRIIEIATLVTDANLNILAE 43
>gi|237809227|ref|YP_002893667.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
9187]
gi|237501488|gb|ACQ94081.1| Exonuclease RNase T and DNA polymerase III [Tolumonas auensis DSM
9187]
Length = 181
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + DR + A + D++ + V +DD L
Sbjct: 6 QNLIWLDMEMTGLEPETDRILEIAMIVTDKELNVLAEGPVLAIHQSDDVL 55
>gi|294139250|ref|YP_003555228.1| oligoribonuclease [Shewanella violacea DSS12]
gi|293325719|dbj|BAJ00450.1| oligoribonuclease [Shewanella violacea DSS12]
Length = 181
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D++ +
Sbjct: 5 ANNLIWVDLEMTGLDPETDRVIEIATIVTDKELNILAE 42
>gi|1794167|dbj|BAA11217.1| unnamed protein product [Vibrio parahaemolyticus]
Length = 234
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 42/190 (22%)
Query: 9 DYETFGRDVALDRPAQFA-------GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
D+ET G + +DR +R++ + + C E+V +
Sbjct: 52 DFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDICH---------ESVKVH 102
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP----NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I P+ G+ E ++ + + CI+ RF + Y + + Y+N
Sbjct: 103 HIRPETLHVSGISEQAAFTQLLDVIAGKILVAHGCIM---EQRFLEQYIK-MKYQNLKLP 158
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
W D L + + P W +L + + AH+A
Sbjct: 159 LIW--------LDTLKIEQYRTQLRPTRSDW----------RLSSIRKELNLPTYQAHNA 200
Query: 178 KADVYATLAL 187
D AT L
Sbjct: 201 LNDAIATAEL 210
>gi|88802420|ref|ZP_01117947.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
gi|88781278|gb|EAR12456.1| DNA Pol III Epsilon Chain [Polaribacter irgensii 23-P]
Length = 275
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 47/199 (23%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
++ V +D ET G ++A DR + A ++V + ++ + P + P+A
Sbjct: 5 LSKPIVFFDLETTGVNIATDRIVEIAVLKVFPNGN--KESKTWLVNPEMEI---PQASID 59
Query: 60 ITGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ GIT E F ++ + + + + G+N+ RFD R D
Sbjct: 60 VHGIT----NEKVASEPTFKMLAQEVSKLMA--GCDLAGFNSNRFDIPLLAEELMRAGID 113
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI------E 170
G D+ + K + L G E
Sbjct: 114 ----FDMKGRKAIDVQVIFH----------------------KKEQRTLGAGYKFYCGKE 147
Query: 171 HVNAHDAKADVYATLALVW 189
AH A AD AT ++
Sbjct: 148 LEGAHGAAADTNATYEILK 166
>gi|229029323|ref|ZP_04185411.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH1271]
gi|228731982|gb|EEL82876.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH1271]
Length = 934
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 63/190 (33%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD NF
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFD---------WNFLTE 102
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DLA + +EH H A
Sbjct: 103 ELRQAGYTEVHCPKVDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
Length = 244
Score = 49.0 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 55/183 (30%), Gaps = 33/183 (18%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFIT 61
+I+D ET G D A R + V E + D DPEA+ +
Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCV------EIVNRMVTGNNLHLYLNPDRDSDPEALAVH 57
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
G+T + F+ QF + + +N FD + R D
Sbjct: 58 GLTTEFLADK----PRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTH 113
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKA 179
+N ++D + + P S L L GI H H A
Sbjct: 114 CEN------IVDSLLHARSLHPG---------KRNS--LDALCDRYGISNAHRTLHGALL 156
Query: 180 DVY 182
D
Sbjct: 157 DSQ 159
>gi|296270642|ref|YP_003653274.1| exonuclease RNase T and DNA polymerase III [Thermobispora bispora
DSM 43833]
gi|296093429|gb|ADG89381.1| Exonuclease RNase T and DNA polymerase III [Thermobispora bispora
DSM 43833]
Length = 198
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
MT+ V D E G D+ D + A + D + ++ KP + L
Sbjct: 1 MTDPLVWIDCEMTGLDLTRDALVEVACIVTDGELNPVDEGVAVVIKPPPETL 52
>gi|270158079|ref|ZP_06186736.1| oligoribonuclease [Legionella longbeachae D-4968]
gi|289163655|ref|YP_003453793.1| oligoribonuclease [Legionella longbeachae NSW150]
gi|269990104|gb|EEZ96358.1| oligoribonuclease [Legionella longbeachae D-4968]
gi|288856828|emb|CBJ10639.1| oligoribonuclease [Legionella longbeachae NSW150]
Length = 185
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
+ + D E G + DR + A V D I VF
Sbjct: 4 NQNLIWIDLEMTGLNPEQDRIIELATVVTDPHLNIIAEGPVF 45
>gi|229102245|ref|ZP_04232954.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-28]
gi|228681146|gb|EEL35314.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-28]
Length = 934
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P V
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKRE-IP----V 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|229096133|ref|ZP_04227106.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-29]
gi|229115089|ref|ZP_04244499.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock1-3]
gi|228668229|gb|EEL23661.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock1-3]
gi|228687093|gb|EEL40998.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
Rock3-29]
Length = 934
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P V
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFVNPKRE-IP----V 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI---RFDDYYSRNIFYRNF 114
FIT +T ++L + + + +N F + R Y
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHNVHFDWNFLNEELRQAGYTEI 112
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D + P S+KL+DLA + +EH
Sbjct: 113 HCPK-------------IDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|219849043|ref|YP_002463476.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
9485]
gi|219543302|gb|ACL25040.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
9485]
Length = 934
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 65/190 (34%), Gaps = 40/190 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ- 66
D ET G LD + A V R + ++ E +P P + +TGI P
Sbjct: 10 DVETTGLQSGLDEIIEVAAV-TFRGRDILDRFE-RLVRPRQSV---PLKITRLTGIDPAA 64
Query: 67 KALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
A E A+ +R I + P I+G+ +I FD R
Sbjct: 65 LAQAPRFNEIGADLARFIG---NRP---IVGH-SIGFDLMMLRA--------------QG 103
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N + D P TS+KL LA GI H +AH A D
Sbjct: 104 MNFNQPIYDTFELATLLLPQA----------TSYKLSALAARLGIPHPDAHRALNDAEVA 153
Query: 185 LALVWLIREK 194
L ++ E+
Sbjct: 154 AQLFAVLSER 163
>gi|289665843|ref|ZP_06487424.1| oligoribonuclease [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289669068|ref|ZP_06490143.1| oligoribonuclease [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 194
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 64/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
+ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETL----EAMDE 63
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ L V A+ + F S C N+I D
Sbjct: 64 WNRNQHRRSGLW-QRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCG---NSICQD---- 115
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P +A
Sbjct: 116 RRFLHRQM-PRLERYFHYRN--LDVSTIKELARRWAP--------------------TVA 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 153 NGFAKSSAHTALSDVRDSIDELRHYRQ 179
>gi|238764684|ref|ZP_04625628.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
gi|238697080|gb|EEP89853.1| Oligoribonuclease [Yersinia kristensenii ATCC 33638]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPLRDRIIEIATLVTDANLNILAE 42
>gi|120555687|ref|YP_960038.1| oligoribonuclease [Marinobacter aquaeolei VT8]
gi|166216266|sp|A1U4D2|ORN_MARAV RecName: Full=Oligoribonuclease
gi|120325536|gb|ABM19851.1| Exonuclease, RNase T and DNA polymerase III [Marinobacter aquaeolei
VT8]
Length = 180
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 17/179 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFITG 62
+ D E G D +R + A + D Q + V D L D G
Sbjct: 7 LIWIDLEMTGLDPEQERIIEMASIITDSQLNIVAEGPVIAIHQPDSLLEQMDEWCTRTHG 66
Query: 63 IT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ Q+ + EAE ++ +F P + N+I D F +
Sbjct: 67 ASGLTQRVKESTISEAEAEQQTLEFLGKHLEPGQSPLCGNSIGQD-----RRFLVKYMPK 121
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA-NGIEHVNAH 175
+ N D+ V + PD ++ + + L D+ + N + H H
Sbjct: 122 LEAFFHYRN--LDVSTVKELARRWRPDVLEGVKKQ--GSHLALDDIRDSINELRHYRDH 176
>gi|329929369|ref|ZP_08283117.1| exonuclease, DNA polymerase III, epsilon subunit family
[Paenibacillus sp. HGF5]
gi|328936456|gb|EGG32901.1| exonuclease, DNA polymerase III, epsilon subunit family
[Paenibacillus sp. HGF5]
Length = 246
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 27/194 (13%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D ET G + D F +RV + ++ E F P +TGIT
Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAIRVIGE--QVIENETFHMIVNSGAPVSPFIAELTGIT 119
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
Q + D +H F + ++ + D R F ++ W
Sbjct: 120 QQ--MVDAAPP--LMEGLHDFMAFIGGRVLVAHAAAHD---------RGFLNAALWKTSK 166
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
LLD M P+ + L +L ++GI H A +D T
Sbjct: 167 VRLTHRLLDTMMLAQRLYPE----------QKDYSLDELLRSSGIPVEGRHHALSDARMT 216
Query: 185 LAL-VWLIREKKPK 197
L +++ + +
Sbjct: 217 ARLWADYMKDIQAR 230
>gi|325955054|ref|YP_004238714.1| DNA polymerase III subunit epsilon [Weeksella virosa DSM 16922]
gi|323437672|gb|ADX68136.1| DNA polymerase III, epsilon subunit [Weeksella virosa DSM 16922]
Length = 453
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 29/210 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I D E G V + A R D Q ++ DP +T IT
Sbjct: 2 FAILDIEATGGKVGEESIIDIAIFRYDGQT-TVDQFISL---VNPMRKIDPFVQKLTNIT 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ L E ++RI + + ++G+N ++FD R F + YD Y W
Sbjct: 58 DKMVLTAPKFH-EIAKRIVEI--TEDCILVGHN-VKFDYRMLRQEFKKLGYD-YEKDW-- 110
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D P+ S+ L L A GI + H A D AT
Sbjct: 111 -------IDTFEFAQKLIPN----------MESYSLGKLTNALGIPITDRHRASGDARAT 153
Query: 185 LALVWLIREKKP-KLFEYLYDYRNKNQLRK 213
L L L+R+K K+ + R + ++++
Sbjct: 154 LKLFQLLRDKDSEKIIQKKSGLRTEKKVKE 183
>gi|237755791|ref|ZP_04584393.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692054|gb|EEP61060.1| DNA polymerase III subunit epsilon [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 203
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 22/193 (11%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N +V +D ET G + +D A V++ + +P + + D A+ I G
Sbjct: 32 NEYVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVRPDREIIED--AIKIHG 89
Query: 63 ITPQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ +K L G+ E R F S P ++GY + FD F + +
Sbjct: 90 LR-KKDLESGIPIEEAVDRFAHFIGSRP---LVGY-YLEFDVAMVNKYFKKLSGTTLPNK 144
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++V Y F I G + + I HDA D
Sbjct: 145 Q---------IEVSALYYDFKIGLIP-----QGFVDLRFDSILKDLDIPTFGKHDALNDA 190
Query: 182 YATLALVWLIREK 194
T + ++ K
Sbjct: 191 IMTALIFLKLKNK 203
>gi|188026358|ref|ZP_02961799.2| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC
25827]
gi|188020096|gb|EDU58136.1| hypothetical protein PROSTU_03865 [Providencia stuartii ATCC
25827]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
N+ + D E G D DR + A + D Q +
Sbjct: 7 NNLIWIDLEMTGLDPERDRIIEIATIVTDSQLNIL 41
>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
Length = 1435
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 473
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 474 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGIE----KT 525
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 526 KNP-----VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 570
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 571 ATGYLLVKMLKDVIEKGFEY 590
>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
Length = 1433
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGIE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis
KBAB4]
Length = 1433
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGIE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|313674131|ref|YP_004052127.1| DNA polymerase iii, epsilon subunit [Marivirga tractuosa DSM 4126]
gi|312940829|gb|ADR20019.1| DNA polymerase III, epsilon subunit [Marivirga tractuosa DSM 4126]
Length = 465
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 28/183 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G A +R + A + D + + ++ + P P A I GI
Sbjct: 2 YAIVDIETTGGYAARNRICEIAIILHDGE-KVVKEYQTLI-NPERHIPPQLSA--IHGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + D E ++ IH+ + + ++ FD F + + +
Sbjct: 58 -DQMVEDAPKFYEEAKTIHELL--EGNIFVAH-SVNFD-----YSFVKAAFQDLGYELK- 107
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
L +R P G S+ L ++ GI+ + H A D AT
Sbjct: 108 ----LKKLCTVRLSRKIFP----------GLKSYSLGNICENRGIKINDRHRAFGDAIAT 153
Query: 185 LAL 187
L
Sbjct: 154 AEL 156
>gi|262194078|ref|YP_003265287.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077425|gb|ACY13394.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 29/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
V D ET G D + A +RV Q E V +P +D DPEA+ + G
Sbjct: 4 LVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDA--DPEALEVNG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI--FYRNFYDSYRW 120
++A D V + + + G+N + FD + + ++
Sbjct: 62 YR-RRAWADAVSLGDAMAELAPML--EGAVLAGHN-VAFDRRFLEAAWDCVGHRPENLDH 117
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKA 179
+A + +P G S L + G+ H A
Sbjct: 118 ------------------HALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFD 159
Query: 180 DVYATLALVWLI 191
DV A+L + +
Sbjct: 160 DVRASLGVAQRL 171
>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
17241]
gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
17241]
Length = 866
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 25/176 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V++D E+ G DV D Q A VR+ + E F C P+ P + + G +
Sbjct: 513 VVFDVESTGADVYTDDIVQIAAVRLSPGGGEAVRFERFLC-PSR---PVGASERVHGFSD 568
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+G FS ++G+N + FD + R
Sbjct: 569 AFLAENGGAPCAALEDFLD-FSK-GCVLVGHN-VMFDLTITSQNLARAGS-----VQTLS 620
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N +D LD+ R P+ KL ++ A G H +H+A D+
Sbjct: 621 NVWYDTLDISRRYMKDLPNH-------------KLSTVSAALGAAHDPSHNAMDDI 663
>gi|332994645|gb|AEF04700.1| oligoribonuclease [Alteromonas sp. SN2]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 60/202 (29%), Gaps = 40/202 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
++ V D E G D + A + D Q + V DD L D +
Sbjct: 6 SNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNVLAEGPVIAVHQPDDVLDNMDEWCTRV 65
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYR 112
G T + V EAE +R+ F S C N I D F
Sbjct: 66 HGETGLTARCRASSVNEAEAARQTMAFLSDYVDAGKSPLCG---NTIGQD-----RRFMV 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + S D+ V I + P+ + G +
Sbjct: 118 KYMPELE-DYFHYRSI-DVSSVKELIKRWKPEVLD--------------------GFDKK 155
Query: 173 NAHDAKADVYATLALVWLIREK 194
H A D+ ++ + REK
Sbjct: 156 GVHLALDDIRESIEEMRYYREK 177
>gi|229016898|ref|ZP_04173826.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH1273]
gi|229023104|ref|ZP_04179618.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH1272]
gi|228738250|gb|EEL88732.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH1272]
gi|228744459|gb|EEL94533.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH1273]
Length = 934
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 63/190 (33%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T ++L + + + +N + FD NF
Sbjct: 54 FITELTGIDESLVKQAPLFQDVAPMIVELLQ-GAAFVAHN-VHFD---------WNFLTE 102
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DLA + +EH H A
Sbjct: 103 ELRQAGYTEVHCPKVDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|167626987|ref|YP_001677487.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|167596988|gb|ABZ86986.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 178
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
T++ V D E G DV R + A + D+ I E +D+ L
Sbjct: 4 TDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEIL 54
>gi|238787531|ref|ZP_04631329.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
gi|238724318|gb|EEQ15960.1| Oligoribonuclease [Yersinia frederiksenii ATCC 33641]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 42
>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
Length = 245
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
M+ +I D ET G DR +FAG+ D + P D +P
Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+ EA + G+T + + F II +N +FD + F R
Sbjct: 53 E-EAAKVHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII--HNAKFDVGFLNMEFRRM 109
Query: 114 FYDSYRWSWDNGNSRWDLLDVMR 136
S + G D L + R
Sbjct: 110 GLPSIE---ELGCKVTDTLAMAR 129
>gi|65318908|ref|ZP_00391867.1| COG1199: Rad3-related DNA helicases [Bacillus anthracis str. A2012]
Length = 934
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 63/190 (33%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ E + + +N + FD NF
Sbjct: 54 FITELTGIDESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFD---------WNFLTE 102
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DLA + +EH H A
Sbjct: 103 EXRQAGYTEIHCPKVDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
Length = 1434
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G + + + A V++ E I+ P+ ITGIT
Sbjct: 421 YVVFDTETTGLNASEHTIIEIAAVKMKGA-EIIDQWTEL---IDPQLQIGPKTTEITGIT 476
Query: 65 PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ E + + F I+ +N FD + R + W
Sbjct: 477 NEMLRGQ-----ETLDVVLRKFKDFTGDAILVAHNAEFDKAFINACAKRIGMEP----WT 527
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N D L + R +Y G +++L LA +E +NAH A D
Sbjct: 528 NP--FLDTLPLARLMY-------------KGMRNYRLGSLAKKFNVELINAHRALDD--- 569
Query: 184 TLALVWLIRE 193
T+AL + ++
Sbjct: 570 TVALAHVFQQ 579
>gi|315224228|ref|ZP_07866068.1| exonuclease [Capnocytophaga ochracea F0287]
gi|314945961|gb|EFS97970.1| exonuclease [Capnocytophaga ochracea F0287]
Length = 258
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 45/198 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
++ +D ET G D+ DR + + ++V + ++ + P +P P+A
Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGN--KESKTWLVNPT---IPIPKAASD 59
Query: 60 ITGITPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ GIT ++ G E +++IH + + GYN+ RFD R D
Sbjct: 60 VHGITDERVA--GEPTFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVD-- 113
Query: 119 RWSWDNGNS-RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEH 171
+D GN D+ + K++ L+ A G +
Sbjct: 114 ---FDLGNRVSVDVQTIFH----------------------KMEQRTLSAAYKFYCGKDL 148
Query: 172 VNAHDAKADVYATLALVW 189
++AH A AD AT ++
Sbjct: 149 IDAHTASADTNATYEILK 166
>gi|251788035|ref|YP_003002756.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
gi|247536656|gb|ACT05277.1| Exonuclease RNase T and DNA polymerase III [Dickeya zeae Ech1591]
Length = 180
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 41
>gi|323339821|ref|ZP_08080090.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
gi|323092694|gb|EFZ35297.1| ATP-dependent helicase DinG [Lactobacillus ruminis ATCC 25644]
Length = 968
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 36/200 (18%)
Query: 1 MTN--HFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPD 54
M+N + + D E G + +R QF+ V + + + + K +D
Sbjct: 34 MSNLQTYAVVDLEMTGTNPNGSERLIQFSCVFTEGN-KIVNTFSTLINPLRKIPEDV--- 89
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+T IT K ++ E + I+ S T + +N I D + + F R
Sbjct: 90 ---QNLTNIT-DKDVKSAPTFDEVAGTIYALLSD--TVFVAHN-IELDYRFLNSEFERIG 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ +D ++ P S++L DLA G +H +
Sbjct: 143 FPKLDLEG---------IDTVQLAQIAFPTL----------ASYRLGDLAHFLGFKHKHP 183
Query: 175 HDAKADVYATLALVWLIREK 194
H A +D + T L L+++K
Sbjct: 184 HHADSDAFVTAELFILLQKK 203
>gi|71891864|ref|YP_277593.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
BPEN]
gi|71795970|gb|AAZ40721.1| oligoribonuclease [Candidatus Blochmannia pennsylvanicus str.
BPEN]
Length = 187
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + DR + A + D + +
Sbjct: 4 DNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSE 40
>gi|332160015|ref|YP_004296592.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|318607428|emb|CBY28926.1| 3'-to-5' oligoribonuclease (orn) [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664245|gb|ADZ40889.1| oligoribonuclease [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330862350|emb|CBX72509.1| oligoribonuclease [Yersinia enterocolitica W22703]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPEKDRIIEIATLVTDANLNILAE 42
>gi|295424856|ref|ZP_06817571.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
gi|295065422|gb|EFG56315.1| ATP-dependent DNA helicase [Lactobacillus amylolyticus DSM 11664]
Length = 934
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 75/199 (37%), Gaps = 41/199 (20%)
Query: 3 NHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PE 56
+ F + D ET G + QF I++ +V + + P P
Sbjct: 8 DTFAVVDLETTGTQRENNNHIIQFGCA-------IIKNMKVVKTYSFMIN---PHREIPL 57
Query: 57 AVF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+V +T I + + + ++++I T + +N + FD + ++ Y
Sbjct: 58 SVQNLTRI-HNEDVEKAPDFSHYAKKIIAILED--TVFVAHN-VNFDLPFLNYELMQHGY 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ N D +++ + + P+ S+KL DL I+H+N H
Sbjct: 114 PALT------NKAIDTVELAKIAF---------PT----LPSYKLSDLTSRLAIKHLNPH 154
Query: 176 DAKADVYAT-LALVWLIRE 193
A +D Y T + L+ +I
Sbjct: 155 KADSDAYGTAILLIDIIHR 173
>gi|253690114|ref|YP_003019304.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756692|gb|ACT14768.1| Exonuclease RNase T and DNA polymerase III [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 180
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLNPERDRIIEIATLVTDANLNVLAE 41
>gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827]
gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827]
Length = 578
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 25/192 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G A D + V+V I P P A+ TG
Sbjct: 29 TTFVVFDLETTGPRAAEDGITEIGAVKVRGG-RVIGEFGTL-VDPERGIPPQIVAL--TG 84
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + G + + F ++ +N FD + + R+ Y
Sbjct: 85 IT--QNMVTGAP--VLASVLPAFLEFAEGAVLVAHNSGFDVGFMKAACERHGYA------ 134
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
W V+ + + A S KL L+ G+ H A D
Sbjct: 135 ------WPKPPVVCTVKLARR-----VLSREEAPSCKLSALSALFGVPEAPNHRALVDAR 183
Query: 183 ATLALVWLIREK 194
AT+ ++ + E+
Sbjct: 184 ATVEVLHRLLER 195
>gi|241667560|ref|ZP_04755138.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254876105|ref|ZP_05248815.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254842126|gb|EET20540.1| oligoribonuclease [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 178
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
T++ V D E G DV R + A + D+ I E +D+ L
Sbjct: 4 TDNLVWIDLEMTGLDVDNCRIIEIAAIITDKNLNIIAEAEPIAIHQSDEIL 54
>gi|223042138|ref|ZP_03612309.1| oligoribonuclease [Actinobacillus minor 202]
gi|240947963|ref|ZP_04752389.1| oligoribonuclease [Actinobacillus minor NM305]
gi|223017077|gb|EEF15518.1| oligoribonuclease [Actinobacillus minor 202]
gi|240297719|gb|EER48180.1| oligoribonuclease [Actinobacillus minor NM305]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V K +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVLAIKQSDELL 55
>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
Length = 1430
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 85/228 (37%), Gaps = 39/228 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + +V++D ET G D + D + V++ + E I F KP + + I
Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKL-KGTEVIGEFSSF-VKPERNL--SEKVTRI 470
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + L D +E + F + + +N FD + RN + +
Sbjct: 471 TGIS-DRELEDAPSLSEVLPKFL-EFCKDSVLVA--HNATFDYRFVRNAVKQLY------ 520
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N W L + + S + S D+ KL D EH H A D
Sbjct: 521 -----NEDWKLPYIDTLALSKSLLKSKSYSLDNVVKRLKLGD------FEH---HRASED 566
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSG 228
T +F+ L K ++K+ +++N+ +++S
Sbjct: 567 ARITAE-----------VFKKLLSMAKKRGIKKIAELENLRKHINISS 603
>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
Length = 1440
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 31/195 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++++D ET G D + A V++ E I+ E F + + +TGI
Sbjct: 424 TYIVFDVETTGLSAVYDTIIELAAVKI-HDGEIIDRFESFA---NPHHPLSATTIDLTGI 479
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T E E R + +S + + +N FD + + R
Sbjct: 480 TDDDV--RNAPEVEEVLRRFKEWSQNDILVA--HNASFDMGFLNTGYKRYGL-------- 527
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
G + ++D + P+ + +L LA +E H A D A
Sbjct: 528 -GKAANPVIDTLELARFLLPE----------MKNHRLNTLAKKFDVELTQHHRAIYDAEA 576
Query: 184 T----LALVWLIREK 194
T + ++ + +K
Sbjct: 577 TGYLLIKMLKEVMQK 591
>gi|262194198|ref|YP_003265407.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077545|gb|ACY13514.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 61/190 (32%), Gaps = 25/190 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
V D ET G D + A +RV Q E V +P +D DPEA+ + G
Sbjct: 4 LVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDA--DPEALEVNG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
++A D V + + + G+N + FD + W +
Sbjct: 62 YR-RRAWADAVSLGDAMAELAPML--EGAVLAGHN-VAFDRRFL----------EAAWDY 107
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
+A + +P G S L + G+ H A DV
Sbjct: 108 VGHR------PENLDHHALDTATLAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161
Query: 182 YATLALVWLI 191
A L + +
Sbjct: 162 RACLGVARRL 171
>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis subsp. hominis C80]
gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis subsp. hominis C80]
Length = 1438
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 61/183 (33%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V + E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPHEKLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|312868848|ref|ZP_07729034.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
PB013-T2-3]
gi|311095588|gb|EFQ53846.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus oris
PB013-T2-3]
Length = 282
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 32/192 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADD-YLPDPEAVFIT 61
FV D ET G + + + V+ T F+ K +P A T
Sbjct: 113 FVSLDLETSGLNPSSAQIISIGAVK-----RVAGHTTTFYRLVKLESGKKVPVDIARM-T 166
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
G+ ++ +GV+ E I I+GYN + FD+ + + R +
Sbjct: 167 GLNNERLAAEGVLVKE--ALIDLQAFTKGLPIVGYN-LLFDERFLQTAVIRTGIVQF--- 220
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N D+L ++ F + + L + G+++ H++ AD
Sbjct: 221 ---NNKMVDVLPYVKTTDKFCDN-------------YHLTTVLAKYGVKNEQPHNSLADA 264
Query: 182 YATLALV-WLIR 192
AT+ LV LI+
Sbjct: 265 TATMELVDKLIK 276
>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
albus 8]
gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
albus 8]
Length = 1498
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEA 57
+T+ + +D ET G + D+ + V++ R E ++ ++ C P +++ +
Sbjct: 443 LTDEIICFDLETTGTNPRDDKIIEIGAVKL-RGLEIVDKFDMLVDPGC-PLTEFISN--- 497
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+T IT G + + + F C++ +N FD + ++ R
Sbjct: 498 --LTNITDDML--KGQSDIKTALEAFVEFCGEKPCLVAHNA-PFDTGFIKHACEREGI 550
>gi|229155207|ref|ZP_04283319.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
4342]
gi|228628334|gb|EEK85049.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus ATCC
4342]
Length = 934
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVELAQ---------ILLPTAD----SYKLRDLAKRHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|300715033|ref|YP_003739836.1| Oligoribonuclease [Erwinia billingiae Eb661]
gi|299060869|emb|CAX57976.1| Oligoribonuclease [Erwinia billingiae Eb661]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
++ + D E G D DR + A + D + VF
Sbjct: 5 ASNLIWIDLEMTGLDPEQDRIIEIATLVTDADLNILAEGPVF 46
>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 1433
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 33/195 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +V +D ET G D +F GV ++ ++ + F P P +T
Sbjct: 382 TGSYVSFDLETTGLSNYYDHIIEFGGVLIENG-RVVKKMQTFIKAPVP---VRPFIQELT 437
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + +E E I +F ++ +N +FD + + R +
Sbjct: 438 NITDADLVNAPSIE-EAMDEILEFL---GDHVLVAHNAQFDIDFIQETLRRIGKEPI--- 490
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN--GIEHVNAHDAKA 179
N+ D LD+ RA++ D S++L +A G + AH A
Sbjct: 491 ---QNAVIDTLDLSRALF-------------DNRRSYRLGSIARFMRIGYDEGVAHRADY 534
Query: 180 DVYAT----LALVWL 190
D L ++ L
Sbjct: 535 DAEVLSLVFLEMLRL 549
>gi|150025957|ref|YP_001296783.1| DNA polymerase III subunit [Flavobacterium psychrophilum JIP02/86]
gi|149772498|emb|CAL43981.1| Probable DNA polymerase III subunit [Flavobacterium psychrophilum
JIP02/86]
Length = 453
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 65/190 (34%), Gaps = 28/190 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G + + A + D + ++ + P V +TGI
Sbjct: 2 YAILDIETTGGQFNEEGITEIAIYKFDGH-QIVDQFISL---VNPEIPIQPFVVKLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ E ++RI + CII +N FD R F R YD +
Sbjct: 58 NAMLVSAPKFH-EVAKRIVEITKD---CIIVAHNTVFDYRILRTEFSRLGYDFQAKT--- 110
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
L + P+ S+ L L A GI N H A+ D AT
Sbjct: 111 -------LCTVELAKILIPE----------QPSYSLGKLVRALGIPITNRHRAEGDALAT 153
Query: 185 LALVWLIREK 194
+ L ++ +K
Sbjct: 154 VKLFKMLLDK 163
>gi|125624340|ref|YP_001032823.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493148|emb|CAL98112.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071124|gb|ADJ60524.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 277
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 66/201 (32%), Gaps = 41/201 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ +V++D+ET G + Q V+ D +++ K Y+ E +
Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQL-VKNQRSYV-STEITQL 58
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGI P L +E +F I V + N FD + Y+ D
Sbjct: 59 TGIKPADLLNQPTIEEILPDFLDFIKGHLVVAH-------NAPFDISF----LYQAIIDC 107
Query: 118 YRWSWDNGNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ +D L + + YA FK DL N +
Sbjct: 108 AITDVEAFRV-YDTLAESKKLLTMSSYALEN--------------FK--DLLEMNDLRS- 149
Query: 173 NAHDAKADVYATLALVWLIRE 193
HDA D T L +++
Sbjct: 150 --HDALNDCLITAKLYQYLQK 168
>gi|121997525|ref|YP_001002312.1| ribonuclease T [Halorhodospira halophila SL1]
gi|121588930|gb|ABM61510.1| RNAse T [Halorhodospira halophila SL1]
Length = 226
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 53/202 (26%)
Query: 9 DYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITGIT 64
D ET G D Q A V R + ++ E C +P + DP+A+ + GI
Sbjct: 37 DVETGGLQAETDALLQIAAVILRAEEGTGRLYPAETHTCHVQPFEGARIDPKALELNGID 96
Query: 65 PQKALRDGVVEAEFSRR----IHQFFSVPNT---CIIGYNNIRFD-----DYYSRNIFYR 112
P+ LR V E + + + Q ++G+N FD +R F R
Sbjct: 97 PEHPLRMAVPERDALGKMFNPVRQELRNTGCNRAVLVGHNAF-FDLAFLNAAVTRTGFKR 155
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIY-------AFSPDGIQWPSRDDGATSFKLQDLAL 165
N + + S +D + Y A GI+W +++
Sbjct: 156 NPFHPF--------SSFDTATLGGLAYGQTVLAKAVKAAGIEWDAKE------------- 194
Query: 166 ANGIEHVNAHDAKADVYATLAL 187
AH A D T L
Sbjct: 195 --------AHSAIYDAEKTAEL 208
>gi|327405996|ref|YP_004346834.1| DNA polymerase III subunit epsilon [Fluviicola taffensis DSM 16823]
gi|327321504|gb|AEA45996.1| DNA polymerase III, epsilon subunit [Fluviicola taffensis DSM
16823]
Length = 458
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 32/196 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++ I D ET G + + A + D + I+S + + +P PE FI+ +
Sbjct: 2 NYAIVDIETTGGSTKSSKITEIAIYKHD-GMKIIDSFDT----LVNPEMPIPE--FISRL 54
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + + E +++I +F CI +N+ FD R+ F YD +
Sbjct: 55 TGIHDDMVENAPKFYEIAKQIIEFTED---CIFVAHNVGFDYGIIRHEFKLLGYDYRKAH 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ + A P + S+ L L A GI+ + H AK D
Sbjct: 112 -------------LCTVRASR---YVIPDHE----SYSLGKLTKALGIQLIGRHRAKGDA 151
Query: 182 YATLALVWLIREKKPK 197
AT L L+ K
Sbjct: 152 EATAHLFTLLHTTDSK 167
>gi|256818856|ref|YP_003140135.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
DSM 7271]
gi|256580439|gb|ACU91574.1| Exonuclease RNase T and DNA polymerase III [Capnocytophaga ochracea
DSM 7271]
Length = 258
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 45/198 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
++ +D ET G D+ DR + + ++V + ++ + P +P P+A
Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGN--KESKTWLVNPT---IPIPKAASD 59
Query: 60 ITGITPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ GIT ++ G E +++IH + + GYN+ RFD R D
Sbjct: 60 VHGITDERVA--GEPTFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVD-- 113
Query: 119 RWSWDNGNS-RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEH 171
+D GN D+ + K++ L+ A G +
Sbjct: 114 ---FDLGNRVSVDVQTIFH----------------------KMEQRTLSAAYKFYCGKDL 148
Query: 172 VNAHDAKADVYATLALVW 189
++AH A AD AT ++
Sbjct: 149 IDAHTASADTNATYEILK 166
>gi|254427614|ref|ZP_05041321.1| exonuclease superfamily [Alcanivorax sp. DG881]
gi|196193783|gb|EDX88742.1| exonuclease superfamily [Alcanivorax sp. DG881]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G DR + A + D + +
Sbjct: 6 NNLIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAE 42
>gi|47094224|ref|ZP_00231936.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
gi|47017396|gb|EAL08217.1| ATP-dependent helicase DinG [Listeria monocytogenes str. 4b H7858]
Length = 618
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIANLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|332669588|ref|YP_004452596.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
484]
gi|332338626|gb|AEE45209.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas fimi ATCC
484]
Length = 239
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 45/196 (22%), Positives = 67/196 (34%), Gaps = 23/196 (11%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G DV DR A VR D T V +P+ A I G++ +
Sbjct: 11 FDTETTGLDVDRDRIVTAALVRRDAA-----GTHVRTWLLDPGVEIPEAAAS-IHGVSTE 64
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A GV I + ++ YN FD R+ +
Sbjct: 65 HAKAHGVAPKAALDEIATELAGAFRAGVPVVAYNA-AFDLCLLDAELRRHRLPTLPDRLL 123
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG-IEHVNAHDAKADVY 182
++D + A + +G KL DL +E + H+A DV
Sbjct: 124 GAARP--VIDPLVLDRAVDRE-------REGKR--KLVDLCGVYEVVESGDLHNADVDVV 172
Query: 183 ATLALVWLIREKKPKL 198
ATL ++ I + P L
Sbjct: 173 ATLDVLERIVGRFPHL 188
>gi|300704711|ref|YP_003746314.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
gi|299072375|emb|CBJ43713.1| oligoribonuclease [Ralstonia solanacearum CFBP2957]
Length = 219
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G DR + A V D + + V D+ L
Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEIL 77
>gi|212640084|ref|YP_002316604.1| Exonuclease [Anoxybacillus flavithermus WK1]
gi|212561564|gb|ACJ34619.1| Exonuclease [Anoxybacillus flavithermus WK1]
Length = 222
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 73/214 (34%), Gaps = 35/214 (16%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F ++D ET G VA DR + V+V + T + P D LP P V +T I
Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRD-LP-PVIVELTNI 86
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYR---NFYDSYR 119
T ++ ++ E ++ QF + C +G+ I FD + ++ R F
Sbjct: 87 T-EEKVKHAPTAIEALQQFFQFVEQKQSVCFVGH-YISFDLFVLKHELRREKMKFRKPTF 144
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE----HVNAH 175
DL+ + Y L+ A A G H
Sbjct: 145 I------DTLDLIGFIAPSYDMRD----------------LERYAQAFGTRMYERHSAIG 182
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
DA Y + L+ R + + + L +
Sbjct: 183 DALTTAYLFVELLQQFRLRGYRTWGELLRATDSQ 216
>gi|251796459|ref|YP_003011190.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
JDR-2]
gi|247544085|gb|ACT01104.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
JDR-2]
Length = 953
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 31/185 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI--TG 62
F + D ET G V+ D Q +D E +E+ F +P + +P A TG
Sbjct: 3 FAVLDLETTGHSVSDD-ILQVGLAVLDDNLEIVETYSSF-VRPTIE-IP---AFITQLTG 56
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I ++ + I + ++ +N + FD + R Y +
Sbjct: 57 IDADMVADAPELDEVLMQLIPYL---EDAVLVAHN-VNFDAGFLNQALDRCGYHPFI--- 109
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
G LD + + P T+++L + GI H H A +D
Sbjct: 110 --GRR----LDTIELLRILYPSI----------TTYQLGAVTELFGIAHDQHHRADSDAI 153
Query: 183 ATLAL 187
AT L
Sbjct: 154 ATAEL 158
>gi|156972480|ref|YP_001443387.1| oligoribonuclease [Vibrio harveyi ATCC BAA-1116]
gi|166216591|sp|A7MZ48|ORN_VIBHB RecName: Full=Oligoribonuclease
gi|156524074|gb|ABU69160.1| hypothetical protein VIBHAR_00112 [Vibrio harveyi ATCC BAA-1116]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 50/211 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D + + E K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELVKMDDW---- 61
Query: 55 PEAVFITGIT---PQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSR 107
T + ++ V E + + +F + G N+I D R
Sbjct: 62 ---CTNTHTSSGLVERVRNSDVSEQDAVAQTIEFLEKWVPKGVSPICG-NSIGQD----R 113
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
Y++ + + D+ + + P+ +
Sbjct: 114 RFLYKHM--PELEEYFHY-RYLDVSTLKELTRRWKPEVLD-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G H A D+ ++A + RE K+
Sbjct: 151 GFSKQGTHLALDDIRESIAELKYYRETIFKI 181
>gi|300692079|ref|YP_003753074.1| oligoribonuclease [Ralstonia solanacearum PSI07]
gi|299079139|emb|CBJ51807.1| oligoribonuclease [Ralstonia solanacearum PSI07]
Length = 219
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G DR + A V D + + V D+ L
Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNVLAEGPVLVIHQPDEIL 77
>gi|282852211|ref|ZP_06261563.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus gasseri 224-1]
gi|282556630|gb|EFB62240.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus gasseri 224-1]
Length = 937
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEV--FFCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKIYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNRDVAQARDFNY-YAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAIDTVELAQIAFPT----------FPSYKLRDLTARLKIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|52842945|ref|YP_096744.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|54295579|ref|YP_127994.1| oligoribonuclease [Legionella pneumophila str. Lens]
gi|54298733|ref|YP_125102.1| oligoribonuclease [Legionella pneumophila str. Paris]
gi|148358519|ref|YP_001249726.1| oligoribonuclease [Legionella pneumophila str. Corby]
gi|296108393|ref|YP_003620094.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
gi|59797992|sp|Q5WT59|ORN_LEGPL RecName: Full=Oligoribonuclease
gi|59797993|sp|Q5X1E6|ORN_LEGPA RecName: Full=Oligoribonuclease
gi|59797999|sp|Q5ZRY0|ORN_LEGPH RecName: Full=Oligoribonuclease
gi|166216265|sp|A5IAI0|ORN_LEGPC RecName: Full=Oligoribonuclease
gi|52630056|gb|AAU28797.1| oligoribonuclease [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53752518|emb|CAH13950.1| hypothetical protein lpp2797 [Legionella pneumophila str. Paris]
gi|53755411|emb|CAH16907.1| hypothetical protein lpl2666 [Legionella pneumophila str. Lens]
gi|148280292|gb|ABQ54380.1| oligoribonuclease [Legionella pneumophila str. Corby]
gi|295650295|gb|ADG26142.1| putative ACR [Legionella pneumophila 2300/99 Alcoy]
gi|307611619|emb|CBX01303.1| hypothetical protein LPW_30001 [Legionella pneumophila 130b]
Length = 187
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP 47
+ + D E G + DR + A + D Q + + +P
Sbjct: 4 NQNLIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPVIAVSQP 50
>gi|119469142|ref|ZP_01612126.1| oligoribonuclease [Alteromonadales bacterium TW-7]
gi|119447394|gb|EAW28662.1| oligoribonuclease [Alteromonadales bacterium TW-7]
Length = 181
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + A D+ + A V D +
Sbjct: 6 SNLIWLDLEMTGLEPATDKILEIATVVTDADLNILAE 42
>gi|257091883|ref|YP_003165524.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044407|gb|ACV33595.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 735
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 41/192 (21%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRV-------DRQWEKIESTEVFFCKPADDYLPDP 55
+ ++D ET G + A D Q VR+ + ++++ E F P
Sbjct: 544 TYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLVDPERFI---------RP 594
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
E + I GI+ +E +H F + T ++ +N FD R + +
Sbjct: 595 EGIRIHGISDDMVRGQPNIEVVLPA-LHDFCND--TVLVAHNA-AFD---MRFLQLKEER 647
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+S +LD + P+ S +L +A GI + H
Sbjct: 648 TGVAFSQP-------VLDTLLLSGVLHPN----------QESHQLDSIAERLGIGIEDRH 690
Query: 176 DAKADVYATLAL 187
+A D AT +
Sbjct: 691 NALGDACATAEV 702
>gi|217963949|ref|YP_002349627.1| DnaQ family exonuclease/DinG family helicase [Listeria
monocytogenes HCC23]
gi|217333219|gb|ACK39013.1| DnaQ family exonuclease/DinG family helicase, putative [Listeria
monocytogenes HCC23]
gi|307571481|emb|CAR84660.1| ATP-dependent helicase [Listeria monocytogenes L99]
Length = 928
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--IT 61
+++ D ET G + DR QFA + + + + P P A +T
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIP-AFIQELT 59
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+P+ + E + + I T + +N + FD + R
Sbjct: 60 GISPKDVKNAPLFE-DVAPIIAGLLED--TIFVAHN-VSFDWTFLEREMTRAGISL---- 111
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LD + P G S+KLQDL+ + H H A +D
Sbjct: 112 -----GKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|260801299|ref|XP_002595533.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae]
gi|229280780|gb|EEN51545.1| hypothetical protein BRAFLDRAFT_117464 [Branchiostoma floridae]
Length = 231
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 44/214 (20%)
Query: 3 NHFVIYDYETFGRDVAL--DRP----AQFAGVRVDRQW-------------EKIESTEVF 43
FV D ET L D P A VR D+ ++
Sbjct: 19 QTFVFLDLETTDLRTGLEEDEPQVTEISLAAVRRDQLLSGTTVPPGGASLPRIMDKFTA- 77
Query: 44 FC-KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIR 100
C +P P+A IT +T Q + V + + + + + P C++ +N
Sbjct: 78 -CVRPTHSI--HPKAAEITNLTNQSLGKHRVFDEDLVKSVVHLLNRQEPPVCLVAHNGDW 134
Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
FD ++ R+ + D + M+ +YA SF L
Sbjct: 135 FDFPVLKSELRRSKTAGL---FPKDVLCVDTMLAMKHLYA------------GQFRSFSL 179
Query: 161 QDLALAN-GIE--HVNAHDAKADVYATLALVWLI 191
L G+ AH A+ DV + +V +
Sbjct: 180 PRLHENLFGVAPPPEVAHTAEGDVITMVKIVKKM 213
>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
Length = 1449
Score = 48.6 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 30/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+VI+D+ET G D+ + A +++ + I+ + P + P E + T I
Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKIQNN-QIIDEFQTLI-NPQQELTPFIENL--TNI 463
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ Q + I F N+ +I +N I FD + N ++
Sbjct: 464 SNQDLKNQPL-----IATILPKFLKFCENSILIAHN-ISFDMGFLVNQTKKHLNLKLNLP 517
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ D L++ R Y D F L+ LA I N H A +DV
Sbjct: 518 F------IDTLNLAR--YCL----------DSNLRYFNLKSLAKYFKISFENHHRAMSDV 559
Query: 182 YAT 184
T
Sbjct: 560 LIT 562
>gi|291617286|ref|YP_003520028.1| Rnt [Pantoea ananatis LMG 20103]
gi|291152316|gb|ADD76900.1| Rnt [Pantoea ananatis LMG 20103]
gi|327393738|dbj|BAK11160.1| ribonuclease T Rnt [Pantoea ananatis AJ13355]
Length = 223
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + D W + T F +P L PEA+ TGI P
Sbjct: 23 DVETAGFNAQTDALLEVAAITLKMDDEGWLHHDQTLHFHVEPFVGALLHPEALAFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + N I+ +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKLVRKGIKDTGCNRAIMVAHNATFDLNFMNAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|224586194|ref|YP_002639993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224470722|gb|ACN48552.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322717301|gb|EFZ08872.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323132691|gb|ADX20121.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|326626042|gb|EGE32387.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
gi|326630269|gb|EGE36612.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 185
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 10 NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 46
>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
NRL30031/H210]
gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
NRL30031/H210]
Length = 245
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
M+ +I D ET G DR +FAG+ D + P D +P
Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + A+ ++I F I +N +FD + F R
Sbjct: 53 E-EAAKVHGLTIEVLEAKNAPPFAQVGKQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
S + G D L + R
Sbjct: 109 MGLPSIE---ELGCKVTDTLAMAR 129
>gi|110835071|ref|YP_693930.1| oligoribonuclease [Alcanivorax borkumensis SK2]
gi|123050323|sp|Q0VME0|ORN_ALCBS RecName: Full=Oligoribonuclease
gi|110648182|emb|CAL17658.1| oligoribonuclease [Alcanivorax borkumensis SK2]
Length = 181
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G DR + A + D + +
Sbjct: 6 NNLIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAE 42
>gi|167771957|ref|ZP_02444010.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
17241]
gi|167665755|gb|EDS09885.1| hypothetical protein ANACOL_03330 [Anaerotruncus colihominis DSM
17241]
Length = 270
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 32/217 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+++D ET G D D+ + A +R++ + + F + + + V +
Sbjct: 38 LILFDTETSGLDFDKDQIIELAALRIEQTAAKGLRIAGQMDQFI-RLPEGQQLTEKIVEL 96
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT + +GV + + + + ++ +N +FD + R++
Sbjct: 97 TGITDRILEAEGVAPHKAATAFAKLINAGDGPVLLVAHNAQFDLLFVRSLLKGVKLAP-- 154
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNAHDA 177
R + LD + P +P KL D +A ++ N+H A
Sbjct: 155 --------RLEFLDTLTVYKDRRP----YPH--------KLADAIIAYDLDGKVKNSHRA 194
Query: 178 KADVYATLALVWLIREKKP--KLFEYLYDYRNKNQLR 212
DV A L ++ + E++ L+ L+ Y K +
Sbjct: 195 IDDVTAMLEVLRAMGEERDDLALYVNLFGYNAKYGVN 231
>gi|86140827|ref|ZP_01059386.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
MED217]
gi|85832769|gb|EAQ51218.1| DNA polymerase III, epsilon subunit [Leeuwenhoekiella blandensis
MED217]
Length = 221
Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 20/186 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV++D ET G + DR + + + S+ + K + + EAV I GI
Sbjct: 36 FVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQE---VFNEEAVAIHGIL 92
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ V E E + +F ++G+ ++ FD R +
Sbjct: 93 RENRKYKKVSEEEAVKAFLEFIGD--AILVGH-HVGFDIGIINYALKRLGAPKLK----- 144
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N D + + D + L DL I + H A D Y T
Sbjct: 145 -NKFTD-------TGVLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGDAYIT 196
Query: 185 LALVWL 190
AL +L
Sbjct: 197 -ALAFL 201
>gi|255068356|ref|ZP_05320211.1| oligoribonuclease [Neisseria sicca ATCC 29256]
gi|255047405|gb|EET42869.1| oligoribonuclease [Neisseria sicca ATCC 29256]
Length = 185
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
++ D E G D +R + A + D + +EV+ +D+ L D
Sbjct: 5 ASNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDEWNTA 64
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ + EAE +++ F +
Sbjct: 65 THGRTGLTQRVRESQLTEAEVEQKLLDFIAQW 96
>gi|226942895|ref|YP_002797968.1| oligoribonuclease [Azotobacter vinelandii DJ]
gi|226717822|gb|ACO76993.1| Exonuclease [Azotobacter vinelandii DJ]
Length = 180
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + D + A + D + + V +D+ L
Sbjct: 4 PQNLIWIDLEMTGLNPERDVIIEMATIVTDSELNILAEGPVIAVHQSDEIL 54
>gi|205355112|ref|YP_002228913.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205274893|emb|CAR39959.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
Length = 181
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 42
>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
Length = 245
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
M+ +I D ET G DR +FAG+ D + P D +P
Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+ EA + G+T + + F II +N +FD + F R
Sbjct: 53 E-EAAKVHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII--HNAKFDVGFLNMEFRRM 109
Query: 114 FYDSYRWSWDNGNSRWDLLDVMR 136
S + G D L + R
Sbjct: 110 GLPSIE---ELGCKVTDTLAMAR 129
>gi|17545661|ref|NP_519063.1| oligoribonuclease [Ralstonia solanacearum GMI1000]
gi|21263804|sp|Q8Y0V1|ORN_RALSO RecName: Full=Oligoribonuclease
gi|17427954|emb|CAD14644.1| probable oligoribonuclease protein [Ralstonia solanacearum
GMI1000]
Length = 219
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G DR + A V D + + V D+ L
Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEIL 77
>gi|16763172|ref|NP_458789.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16767599|ref|NP_463214.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29144651|ref|NP_807993.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56416144|ref|YP_153219.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62182799|ref|YP_219216.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161505144|ref|YP_001572256.1| oligoribonuclease [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|161617623|ref|YP_001591588.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167553558|ref|ZP_02347307.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167994766|ref|ZP_02575857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168231388|ref|ZP_02656446.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168237081|ref|ZP_02662139.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168244869|ref|ZP_02669801.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168263295|ref|ZP_02685268.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168467067|ref|ZP_02700915.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|168822519|ref|ZP_02834519.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194446159|ref|YP_002043608.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194451819|ref|YP_002048396.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194472818|ref|ZP_03078802.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194733922|ref|YP_002117294.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197248139|ref|YP_002149267.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197263840|ref|ZP_03163914.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197365070|ref|YP_002144707.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198244671|ref|YP_002218237.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200389037|ref|ZP_03215649.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204927249|ref|ZP_03218451.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|207859499|ref|YP_002246150.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213052288|ref|ZP_03345166.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213419498|ref|ZP_03352564.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
gi|213428680|ref|ZP_03361430.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213583916|ref|ZP_03365742.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
gi|213650568|ref|ZP_03380621.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|213850085|ref|ZP_03380983.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
gi|238910511|ref|ZP_04654348.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|289805592|ref|ZP_06536221.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
gi|289829989|ref|ZP_06547440.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
gi|54038786|sp|P65600|ORN_SALTI RecName: Full=Oligoribonuclease
gi|54041583|sp|P65599|ORN_SALTY RecName: Full=Oligoribonuclease
gi|59797989|sp|Q5PLG7|ORN_SALPA RecName: Full=Oligoribonuclease
gi|81309509|sp|Q57GM7|ORN_SALCH RecName: Full=Oligoribonuclease
gi|25338361|pir||AI1047 oligoribonuclease (EC 3.1.-.-) [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16422913|gb|AAL23173.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16505480|emb|CAD06830.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29140290|gb|AAO71853.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56130401|gb|AAV79907.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62130432|gb|AAX68135.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|160866491|gb|ABX23114.1| hypothetical protein SARI_03281 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161366987|gb|ABX70755.1| hypothetical protein SPAB_05483 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404822|gb|ACF65044.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194410123|gb|ACF70342.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194459182|gb|EDX48021.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194709424|gb|ACF88645.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195630566|gb|EDX49178.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197096547|emb|CAR62157.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|197211842|gb|ACH49239.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197242095|gb|EDY24715.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197289951|gb|EDY29310.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197939187|gb|ACH76520.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199606135|gb|EDZ04680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204323914|gb|EDZ09109.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205322027|gb|EDZ09866.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205327412|gb|EDZ14176.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205334333|gb|EDZ21097.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205336339|gb|EDZ23103.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205341098|gb|EDZ27862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205347926|gb|EDZ34557.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206711302|emb|CAR35680.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|261249445|emb|CBG27309.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267996684|gb|ACY91569.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301160842|emb|CBW20373.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312915451|dbj|BAJ39425.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320088780|emb|CBY98538.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321223225|gb|EFX48295.1| 3'-to-5' oligoribonuclease (orn) [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322615515|gb|EFY12435.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322618575|gb|EFY15464.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322622012|gb|EFY18862.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627084|gb|EFY23876.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322631043|gb|EFY27807.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322637738|gb|EFY34439.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322642402|gb|EFY39006.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645663|gb|EFY42188.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322650497|gb|EFY46905.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653449|gb|EFY49779.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322659724|gb|EFY55967.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322662065|gb|EFY58281.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666186|gb|EFY62364.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672606|gb|EFY68717.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322676036|gb|EFY72107.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322680520|gb|EFY76558.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322684586|gb|EFY80590.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323192901|gb|EFZ78127.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197223|gb|EFZ82363.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201660|gb|EFZ86724.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323206174|gb|EFZ91136.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323213183|gb|EFZ97985.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323215556|gb|EGA00300.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323219541|gb|EGA04026.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227844|gb|EGA11998.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323229014|gb|EGA13143.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323236374|gb|EGA20450.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323237506|gb|EGA21567.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323241828|gb|EGA25857.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323248023|gb|EGA31960.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323254646|gb|EGA38457.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323258295|gb|EGA41972.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323259572|gb|EGA43206.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265845|gb|EGA49341.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323270289|gb|EGA53737.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|332991164|gb|AEF10147.1| oligoribonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 181
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAE 42
>gi|85711864|ref|ZP_01042919.1| oligoribonuclease [Idiomarina baltica OS145]
gi|85694261|gb|EAQ32204.1| oligoribonuclease [Idiomarina baltica OS145]
Length = 183
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 34/199 (17%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD--DYLPDPEAV 58
+ + D E G + D + A + D + + +P D + D
Sbjct: 7 SQRLIWIDLEMTGLNPEYDHVIEVATIVTDADLNILAEGPTIAIHQPQSNLDKMDDWNVK 66
Query: 59 FITGI-TPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
TG + + E + R +F S PNT + N+I D R ++
Sbjct: 67 THTGSGLVDRVKKSQYSEQDAVRETIEFLSHYVEPNTSPMCGNSICQD----RRFLAQHM 122
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ N D+ + + P+ + NG + A
Sbjct: 123 -PELEAFFHYRN--LDVSTIKELAKRWKPEAM--------------------NGFKKKGA 159
Query: 175 HDAKADVYATLALVWLIRE 193
H+A AD+ ++ + R
Sbjct: 160 HEALADIRESIDELKHYRA 178
>gi|116630207|ref|YP_815379.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri
ATCC 33323]
gi|282852827|ref|ZP_06262168.1| exonuclease [Lactobacillus gasseri 224-1]
gi|116095789|gb|ABJ60941.1| DNA polymerase III, alpha subunit (gram-positive type)
[Lactobacillus gasseri ATCC 33323]
gi|282555935|gb|EFB61556.1| exonuclease [Lactobacillus gasseri 224-1]
Length = 320
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 46/224 (20%), Positives = 81/224 (36%), Gaps = 35/224 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
++ + D ET G DR + G++V E + + P + +P FIT
Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRHG-EVVATFSELVKFPDSNKVP----TFIT 84
Query: 62 ---GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI G+ E ++ ++ F + I+GYN + FD F + + Y
Sbjct: 85 KLNGIDEAAIEEKGLPVQEAIKK-YREFIGSDP-IVGYN-VNFD-----LNFVYDLAEKY 136
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N N D+ + R+ Y P L + N I H
Sbjct: 137 HLTVLN-NDYVDVYRLARSFY---------PQERHNR---LLDCMHRMN-IAENQEHRGL 182
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
D T + ++ KLF+ + R + ++ L D+ + P
Sbjct: 183 DDCLDT----KKVFDEFHKLFKQEHMLRAQEAVKTL-DLTSEWP 221
>gi|292628026|ref|XP_002666829.1| PREDICTED: probable transcription factor PML-like isoform 1 [Danio
rerio]
gi|326679985|ref|XP_003201423.1| PREDICTED: probable transcription factor PML-like isoform 2 [Danio
rerio]
Length = 235
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 44/220 (20%), Positives = 71/220 (32%), Gaps = 55/220 (25%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V +D ET G D + + Q A V + F + A ITG +
Sbjct: 13 VFFDLETTGLDSSCE-IVQLAAVSGGHTFNLFMVPRRPFQR---------GASRITGFSV 62
Query: 66 QK---------ALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFD--------DYY- 105
+ L + EA F + + ++G+N RFD D +
Sbjct: 63 KHQRLFLHRRPLLTSSLKEALLSFISFLRML---DHPLLLGHNIRRFDCPVLARALDEFS 119
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
R+ F R D L + R + +D G SFK + L
Sbjct: 120 LRSHFQREVS-----------GFVDTLPLARQL-----------LKDHGLQSFKQESLVK 157
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
AH+A DV A L W ++ ++ ++ +
Sbjct: 158 NLLGVSYAAHNALEDVQALQKLYWKLKPSANQIQQHTFTL 197
>gi|116511811|ref|YP_809027.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp.
cremoris SK11]
gi|116107465|gb|ABJ72605.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactococcus lactis subsp. cremoris SK11]
Length = 277
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 66/201 (32%), Gaps = 41/201 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ +V++D+ET G + Q V+ D +++ K Y+ E +
Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQELARFNQL-VKNQRSYV-STEITQL 58
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGI P L +E +F I V + N FD + Y+ D
Sbjct: 59 TGIKPADLLNQPTIEEILPDFLDFIKGHLLVAH-------NAPFDISF----LYQAIIDC 107
Query: 118 YRWSWDNGNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ +D L + + YA FK DL N +
Sbjct: 108 AITDVEAFRV-YDTLAESKKLLTMSSYALEN--------------FK--DLLEMNDLRS- 149
Query: 173 NAHDAKADVYATLALVWLIRE 193
HDA D T L +++
Sbjct: 150 --HDALNDCLITAKLYQYLQK 168
>gi|312887481|ref|ZP_07747079.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
paludis DSM 18603]
gi|311300023|gb|EFQ77094.1| Exonuclease RNase T and DNA polymerase III [Mucilaginibacter
paludis DSM 18603]
Length = 232
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 42/209 (20%), Positives = 68/209 (32%), Gaps = 51/209 (24%)
Query: 1 MTNHFVIYDYETFGRDVALDRP----------AQFAGVRVDRQWEKIESTEVFFCKPADD 50
M ++F+ D ET G +P Q + + R E+I+ + + DD
Sbjct: 1 MQDYFLFIDTETSGLPKDWSQPYSNDANWPYALQVSWIIYTRAGEEIKR-NNHYIR-DDD 58
Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG------YNNIRFDDY 104
+ +PEA I GI+ + G + + ++Q ++G YN D
Sbjct: 59 FTINPEAYNIHGISREFLNLHGEWRKDVMQLLYQDMLQYKPMVVGHYVELDYNIAGVD-- 116
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAI-----YAFSPDGIQWPSRDDGATSFK 159
FYR D+ D L + Y +P +
Sbjct: 117 -----FYRIGMDN----------PMDTLPRYCTMLGSKGYGRNPRVEY----------LR 151
Query: 160 LQDLALANGIEHV-NAHDAKADVYATLAL 187
L L A + N H+A D AT
Sbjct: 152 LGQLYSALFNRTLYNQHNAIIDAEATAEC 180
>gi|332668025|ref|YP_004450813.1| DNA polymerase III subunit epsilon [Haliscomenobacter hydrossis DSM
1100]
gi|332336839|gb|AEE53940.1| DNA polymerase III, epsilon subunit [Haliscomenobacter hydrossis
DSM 1100]
Length = 463
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 79/228 (34%), Gaps = 47/228 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + I D ET G + DR + A V D + +ES E +PE +
Sbjct: 1 MKKKYAIIDVETTGGKASRDRIIEIAVVIHDGN-QILESWESLI---------NPETLIP 50
Query: 61 TGITP-----QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
IT + + + E +R+I + + +N RFD + F R Y
Sbjct: 51 WNITILTGINDQMVANAPKFYEVARKIVEL--TEGAIFVAHNA-RFDYSFIGEEFKRLGY 107
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
Y L +R P G ++ L L+ I + H
Sbjct: 108 T-YTRKQ---------LCTLRLARQTLP----------GLYAYGLDALSRHFNIHNQARH 147
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI-QNMTP 222
A DV AT+ ++ I + + D R K +L + I + M P
Sbjct: 148 RAMGDVQATIKVLEYILQHE--------DNREKAELLINLGIKEAMLP 187
>gi|146329636|ref|YP_001209796.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
gi|166216257|sp|A5EY84|ORN_DICNV RecName: Full=Oligoribonuclease
gi|146233106|gb|ABQ14084.1| oligoribonuclease [Dichelobacter nodosus VCS1703A]
Length = 180
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD 49
N+ V D E G D D + A + D Q + + +P
Sbjct: 5 NNLVWIDLEMTGLDPQHDEIIEIATIVTDAQLNILAEGPVIAVYQPEP 52
>gi|58337449|ref|YP_194034.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
gi|58254766|gb|AAV43003.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
Length = 927
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 44/200 (22%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PE 56
+ F + D ET G QF I++ +V + + P P+
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCA-------IIKNMKVVKTYSFLIN---PHREIPQ 57
Query: 57 AVF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+V +TGI+ + + + ++ +I T + +N + FD + ++ Y
Sbjct: 58 SVVNLTGISNEDVQKQKDFDY-YAPKIVSILQD--TVFVAHN-VDFDLPFLNYELTQHGY 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D+ N D +++ + + P+ S+KL DL I+H+N H
Sbjct: 114 DALT------NKAIDTVELAKIAF---------PT----LPSYKLGDLTSQLKIKHLNPH 154
Query: 176 DAKADVYAT----LALVWLI 191
A +D Y T + ++ +
Sbjct: 155 KADSDAYGTAVLLIEIIKKL 174
>gi|255523173|ref|ZP_05390144.1| Exonuclease RNase T and DNA polymerase III [Clostridium
carboxidivorans P7]
gi|296186139|ref|ZP_06854544.1| exonuclease [Clostridium carboxidivorans P7]
gi|255513041|gb|EET89310.1| Exonuclease RNase T and DNA polymerase III [Clostridium
carboxidivorans P7]
gi|296049407|gb|EFG88836.1| exonuclease [Clostridium carboxidivorans P7]
Length = 255
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 54/188 (28%), Gaps = 34/188 (18%)
Query: 22 PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKAL-RDGVVEA---- 76
Q V++D + I KP + +P +TGIT E
Sbjct: 32 IIQIGAVKLDENLQIISI-LNKLVKPELYTVMNPFVEEMTGITIDMLNTEQPFQEVYKEI 90
Query: 77 -EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF-YDSYRWSWDNGNSRWDLLDV 134
EF V C I RNI Y N + N +
Sbjct: 91 LEFIGNDKNILCVWGACDI--------KELFRNIQYHNLDISPISKEYIN-------IQF 135
Query: 135 MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-AHDAKADVYATLALVWLIRE 193
+ Y P G L++ A I N H+A D Y T + I +
Sbjct: 136 YASKYLNCPKGTNIG----------LKNAAELLNINIENKFHNALNDAYYTAEVFKKIPK 185
Query: 194 KKPKLFEY 201
K + +Y
Sbjct: 186 KNINIIKY 193
>gi|254804313|ref|YP_003082534.1| oligoribonuclease [Neisseria meningitidis alpha14]
gi|254667855|emb|CBA03898.1| oligoribonuclease [Neisseria meningitidis alpha14]
Length = 215
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ D E G + +R + A + D + +EV+ +D+ L D
Sbjct: 33 NNLCWLDMEMTGLNPETNRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTAT 92
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T Q+ EAE +++ F S
Sbjct: 93 HGRTGLTQRVRESSHTEAEVEQKLLDFMSEW 123
>gi|68535768|ref|YP_250473.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
gi|68263367|emb|CAI36855.1| hypothetical protein jk0693 [Corynebacterium jeikeium K411]
Length = 222
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
F + D ET G + DR + A VR D + ++S D
Sbjct: 21 FAVIDTETTGFNKRYDRIIEIAAVRADAHFNPVDSWHTL---LNPD 63
>gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
meningitidis ATCC 13091]
gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
meningitidis ATCC 13091]
gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
ES14902]
gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M01-240355]
Length = 244
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T Q AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIQVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|154484062|ref|ZP_02026510.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
27560]
gi|149735104|gb|EDM50990.1| hypothetical protein EUBVEN_01771 [Eubacterium ventriosum ATCC
27560]
Length = 237
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 35/215 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +V D ET G V D+ + V+V R + +++ P +
Sbjct: 1 MVKDYVCVDIETSGIRVKWDKIIEIGAVKV-RDGKAVDTFSEL---INPGLKLSPYITEL 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +E R I F+ + I+G+N I FD + + +N
Sbjct: 57 TGITDEMLKDKPFIEEVLPRFI--EFAG-DDVIMGHN-IMFDYSFLK----QNAI----- 103
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRD-DGATSFKLQDLALANGIEHVNAHDAKA 179
N ++D + + D ++ + G S L+ L GI N H A
Sbjct: 104 ---NQKLKFDKMGI---------DTLKIARKTLKGLESRGLEYLCNYYGIADENHHRAFN 151
Query: 180 DVYATLALVWLIREK----KPKLFE-YLYDYRNKN 209
D T L ++ EK P LFE Y ++ K
Sbjct: 152 DAEVTSKLYNVLMEKFGTESPGLFEPYQLVFKAKK 186
>gi|15677367|ref|NP_274522.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013]
gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710]
gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
OX99.30304]
gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M01-240149]
gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
NZ-05/33]
Length = 244
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T Q AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIQVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|328675229|gb|AEB27904.1| Oligoribonuclease [Francisella cf. novicida 3523]
Length = 178
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 40/204 (19%), Positives = 64/204 (31%), Gaps = 44/204 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVF 59
++ + D E G DV R + A + D+ I + P+ V
Sbjct: 4 ADNLIWIDLEMTGLDVDNCRIIEIAAIITDKDLNIIAEAEPIAIY---------QPDEVL 54
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T + E ++R+ S +T + F + Y+
Sbjct: 55 AT---MNEWCIKTHAETGLTQRVKA--STISTEAAEQQILEFIREFV----------PYQ 99
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD-------GATSFKL--QDLALANGIE 170
S GNS W A Y P DD T+ KL Q + G +
Sbjct: 100 SSPLCGNSIWQDRR-FLAKYM--------PKIDDYCHYRMLDVTTLKLLNQYWGDSKGFD 150
Query: 171 HVNAHDAKADVYATLALVWLIREK 194
N H A D+ ++A + R+K
Sbjct: 151 KKNTHKALDDIRESIAELKFYRQK 174
>gi|124002035|ref|ZP_01686889.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
gi|123992501|gb|EAY31846.1| DNA polymerase III, epsilon subunit [Microscilla marina ATCC 23134]
Length = 463
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 47/222 (21%), Positives = 73/222 (32%), Gaps = 43/222 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFIT 61
+ I D ET G D+ + A + D + ++S C +D IT
Sbjct: 2 YTIIDVETTGLRPTDDKITEIAIYKHDGE-SVVDSFHSLVNPECYISDRI------TQIT 54
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + E ++ I T + +N FD + R F + +
Sbjct: 55 GITNDMV-ANAPKFYEIAKDILAI--TEGTVFVAHNA-HFDYGFVREEF-KALGYKFTRK 109
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
L +R P G S+ L L I+ N H A AD
Sbjct: 110 T---------LCTVRVSRKVFP----------GLPSYSLAKLCKHFKIQLTNHHRASADA 150
Query: 182 YATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
AT+ + L+ + KL KN + I +N+ P
Sbjct: 151 LATVEVFEKLLEKNSSKL--------TKNVVETEIKAKNLPP 184
>gi|227904085|ref|ZP_04021890.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
gi|227868104|gb|EEJ75525.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
Length = 927
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 44/200 (22%)
Query: 3 NHFVIYDYETFGRDVALDR-PAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PE 56
+ F + D ET G QF I++ +V + + P P+
Sbjct: 8 DTFAVVDLETTGTQRENGHHIIQFGCA-------IIKNMKVVKTYSFLIN---PHREIPQ 57
Query: 57 AVF-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+V +TGI+ + + + ++ +I T + +N + FD + ++ Y
Sbjct: 58 SVVNLTGISNEDVQKQKDFDY-YAPKIVSILQD--TVFVAHN-VDFDLPFLNYELTQHGY 113
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D+ N D +++ + + P+ S+KL DL I+H+N H
Sbjct: 114 DALT------NKAIDTVELAKIAF---------PT----LPSYKLGDLTSQLKIKHLNPH 154
Query: 176 DAKADVYAT----LALVWLI 191
A +D Y T + ++ +
Sbjct: 155 KADSDAYGTAVLLIEIIKKL 174
>gi|269966857|ref|ZP_06180930.1| oligoribonuclease [Vibrio alginolyticus 40B]
gi|269828524|gb|EEZ82785.1| oligoribonuclease [Vibrio alginolyticus 40B]
Length = 219
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 48/204 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D + + E K D
Sbjct: 44 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELAKMDDWCTNT 103
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRN 108
A +G+ ++ + E + + +F C N+I D R
Sbjct: 104 HTA---SGL-VERVRNSQISEQDAVAQTIEFLEKWVPKGASPICG---NSIGQD----RR 152
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
Y++ + + D+ + + P+ + NG
Sbjct: 153 FLYKHM--PELEEFFHY-RYVDVSTLKELARRWQPEVL--------------------NG 189
Query: 169 IEHVNAHDAKADVYATLALVWLIR 192
H A D+ ++A + R
Sbjct: 190 FTKQGTHLALDDIRESIAELKYYR 213
>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
Length = 1433
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKVKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKVGIE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|158316676|ref|YP_001509184.1| DNA polymerase III subunit epsilon [Frankia sp. EAN1pec]
gi|158112081|gb|ABW14278.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EAN1pec]
Length = 389
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 61/189 (32%), Gaps = 34/189 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFITGITPQ 66
D ET G DR A V + E + D P DP V I G+T Q
Sbjct: 81 DVETTGLSPTRDRVLSVAVVLTAAD----GTVEHRWSTLLD---PGCDPGPVHIHGLTRQ 133
Query: 67 KALRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ G + + + ++ +N FD +R
Sbjct: 134 RLA--GSPTFAAVADEVAGLLA--GRVLVAHNA-AFD--------WRMLAGEAMRIGTTI 180
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
W L + A G++ P S +L LA G+ AHDA+ D
Sbjct: 181 PVEWRLCTLTLASRL----GLELP-------SLRLASLAAYWGVVQRRAHDAQDDAEVLA 229
Query: 186 ALVWLIREK 194
AL+ I ++
Sbjct: 230 ALLPRILQR 238
>gi|325279748|ref|YP_004252290.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
splanchnicus DSM 20712]
gi|324311557|gb|ADY32110.1| Exonuclease RNase T and DNA polymerase III [Odoribacter
splanchnicus DSM 20712]
Length = 260
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G ++A DR + + ++V E + P +P+ EA I
Sbjct: 5 LANPIVFFDLETTGINIAKDRIVEISVLKVYP--NGKEEQKTIRVNPGMH-IPE-EASAI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR 112
GI + V +A + I + + + + GYN+ RFD F R
Sbjct: 61 HGI-----YDEDVKDAPMFKHIARELAHYIEGCDLGGYNSNRFDIPLLAEEFLR 109
>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
DSM 16973]
gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
DSM 16973]
Length = 889
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 46/227 (20%), Positives = 77/227 (33%), Gaps = 44/227 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDR-------QWEKIESTEVFFCKPADDYLPDPEAV 58
V++D ET G DV D Q A ++V + TE D +P+P
Sbjct: 504 VVFDTETTGLDVFADDIVQLAAIKVRNGKVVEGSSFNVFIRTEREIPAMLGD-IPNP--- 559
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I + + L A+F + ++G+N + +D + R+
Sbjct: 560 IIEEMKHHECLSPEEAFAQFMDYVADD------AVLGHN-VEYDFHILLYNLLRH----- 607
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W + D ++ I P S+KL+ L G+E N+H A
Sbjct: 608 APQWVERWKAVERFDSLKLIRLLHPR----------QKSYKLKHLLERLGLEGTNSHLAD 657
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
D+ AT +L +Y Y + + I P+V
Sbjct: 658 DDIMATKSLA-----------DYCYRHAVACVDEQQRFIDAHRPMVE 693
>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis XB6B4]
Length = 905
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 62/191 (32%), Gaps = 36/191 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
+ + +V++D ET G ++ + V+V+ +I F P +P P +
Sbjct: 471 LDDTYVVFDLETTGFSPDKNKIIEIGAVKVEHG--EITERFSTFVNPE---VPIPYRIEE 525
Query: 60 ITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+T I + +E +F F I+ +N FD + R +
Sbjct: 526 LTSIRDDMVIDAPKIETILPQFM-----EFC--GDAIMVAHNADFDMSFIIKNCERQGIE 578
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++D + P FKL +A A G+ N H
Sbjct: 579 KEFT----------IIDTVALARILLPQL----------NRFKLDTVAKALGVSLENHHR 618
Query: 177 AKADVYATLAL 187
A D T +
Sbjct: 619 AVDDAGCTAEI 629
>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
praevalens DSM 2228]
Length = 1404
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 37/226 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F+++D ET G + + + V+ +KI E F + ITGI
Sbjct: 392 FIVFDLETTGLNPSQHEIIEIGAVKYQGG-KKIAEFESF---INPGVRIPAKITEITGIN 447
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ E + I+ F T ++ +N FD F R + D+
Sbjct: 448 --DRMVKNAPGLE--KVINDFIEFAGTGVLVAHNADFD-----YGFIRTALEKLEIEKDD 498
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+ +LD + A D + KL LA G++ N H A D AT
Sbjct: 499 ----YTVLDTLGLSRAVVKDS----------KNHKLNTLAKYFGVDLENHHRALDDANAT 544
Query: 185 LA-LVW---LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
L LI++ + ++ N ID +++ P V
Sbjct: 545 AEVLAKLLELIKD------DGCHNLNKINDYISKIDWKDLRPFHAV 584
>gi|304403858|ref|ZP_07385520.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
YK9]
gi|304346836|gb|EFM12668.1| DNA polymerase III, epsilon subunit [Paenibacillus curdlanolyticus
YK9]
Length = 244
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 43/217 (19%), Positives = 71/217 (32%), Gaps = 45/217 (20%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFC------KPADDYLPDPEA 57
+++D ET G D F V V +I F+ +
Sbjct: 60 IIVFDLETTGFYPYNGDEIISFGAVLVKGD--EIFEDVSFYSLVNPKRRIPMHI------ 111
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGIT + + +G + + +H F I+ + D + +R +
Sbjct: 112 TQLTGITNE--MVEGAP--DLMQVLHDFMEFVGRRILLAHGSGHDKQFLNAALWRTSKVN 167
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW--PSRDDGATSFKLQDLALANGIEHVNAH 175
LLD M +W P R DG L +L + I + H
Sbjct: 168 LTHR---------LLDTMMVA--------KWLEPKRPDGYG---LDELLESANIPIADRH 207
Query: 176 DAKADVYAT----LALVWLIREKKPKLFEYLYDYRNK 208
A D T +A + I+E+ + LY Y +K
Sbjct: 208 HALKDSIMTAKLWMAYLKKIQERNIVTLDDLYAYLSK 244
>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
Length = 1444
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G D+ + A V++ + + I+ E + + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEEM---IDPGFPLSELTINLTHIT 476
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ G E R+ Q F ++G+N + FD + N + R+ DN
Sbjct: 477 DD--MVHGSKSEEEVFRLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI----DN 528
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + KL LA + + H A AD AT
Sbjct: 529 P-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANADAEAT 573
Query: 185 LALVWLIREKKPKLFE 200
L++ + ++ K++
Sbjct: 574 GYLLYALEKEAAKMYN 589
>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
Length = 1437
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G D+ + A V++ + + I+ E + + +T IT
Sbjct: 414 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEEM---IDPGFPLSELTINLTHIT 469
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ G E R+ Q F ++G+N + FD + N + R+ DN
Sbjct: 470 DD--MVHGSKSEEEVFRLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI----DN 521
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + KL LA + + H A AD AT
Sbjct: 522 P-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANADAEAT 566
Query: 185 LALVWLIREKKPKLFE 200
L++ + ++ K++
Sbjct: 567 GYLLYALEKEAAKMYN 582
>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type)
[Lactobacillus rhamnosus HN001]
gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type)
[Lactobacillus rhamnosus HN001]
Length = 1444
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 27/196 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G D+ + A V++ + + I+ E + + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEEM---IDPGFPLSELTINLTHIT 476
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ G E R+ Q F ++G+N + FD + N + R+ DN
Sbjct: 477 DD--MVHGSKSEEEVFRLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI----DN 528
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + KL LA + + H A AD AT
Sbjct: 529 P-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANADAEAT 573
Query: 185 LALVWLIREKKPKLFE 200
L++ + ++ K++
Sbjct: 574 GYLLYALEKEAAKMYN 589
>gi|90416474|ref|ZP_01224405.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
gi|90331673|gb|EAS46901.1| oligoribonuclease [marine gamma proteobacterium HTCC2207]
Length = 188
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G DR + A V D+ +
Sbjct: 14 NLIWIDLEMTGLSPERDRIIEIATVVTDKDLNVLAE 49
>gi|227890751|ref|ZP_04008556.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
salivarius ATCC 11741]
gi|227867160|gb|EEJ74581.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
salivarius ATCC 11741]
Length = 937
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 30/188 (15%)
Query: 9 DYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
D ET G + D+ QF+ + + F + +P P V +TGI
Sbjct: 19 DLETTGPKQDGSDKIIQFSC-----DFVQSNKIVNHFSTLINPGMPIPAEVKKLTGIK-D 72
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
K +R E + I+ NT + +N + FD + + R Y
Sbjct: 73 KDVRYAPYFDEVAGTIYAMLQ--NTTFVAHN-VNFDYSFLSSELERAGYPELELP----- 124
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
++D ++ P S++L D++ + H++ H A +D AT
Sbjct: 125 ----MMDTVQLTQIIYPTL----------VSYRLIDVSKYLQLSHIHPHKADSDTKATAE 170
Query: 187 LVWLIREK 194
L+ ++++
Sbjct: 171 LLINLKKR 178
>gi|254502460|ref|ZP_05114611.1| exonuclease family [Labrenzia alexandrii DFL-11]
gi|222438531|gb|EEE45210.1| exonuclease family [Labrenzia alexandrii DFL-11]
Length = 471
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 35/192 (18%), Positives = 57/192 (29%), Gaps = 31/192 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
F ++D ET G D Q VRV +P P + +
Sbjct: 278 SFTVFDTETTGLMPNKDDIVQIGAVRVVNGRMVPGERIDQLVNPGRPIP-----PASSKV 332
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI+ + D E H F+ + + +N FD F + +
Sbjct: 333 HGIS-DTMVADAPQPLEAVADFH-EFARESVIVA--HNAPFD-----LAFLQKYGKVAGL 383
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W + +LD + + + S + + L + I H A D
Sbjct: 384 EWPHP-----ILDTVLL------SAVVFGSNEVHTLDALCERLCI--DIRPEVRHTALGD 430
Query: 181 VYATLA-LVWLI 191
AT L L+
Sbjct: 431 AEATAEALCKLL 442
>gi|73540610|ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134]
gi|72118023|gb|AAZ60286.1| Exonuclease [Ralstonia eutropha JMP134]
Length = 210
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ V D E G DR + A V D + +
Sbjct: 14 NNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAE 50
>gi|311695934|gb|ADP98807.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
Length = 486
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 34/188 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ F D ET G + A DR + G+R R E + + + P T
Sbjct: 10 SATFAFLDIETTGGNSARDRITEI-GIRFWRAGEVVGEWQTL---LNPETRISPFIENFT 65
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ + + E E + + + +N RFD + ++ F R
Sbjct: 66 GISNEMVADAPLFE-EVADELEAQL--KGKVFVAHNA-RFDYGFIKSEFRRLGRL----- 116
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAK 178
+L ++ P+ F+ + L +G+ V H A
Sbjct: 117 -----FSAKVLCTVKLSRRLYPE-------------FRRHNMDALIARHGLARVQRHRAM 158
Query: 179 ADVYATLA 186
DV A LA
Sbjct: 159 GDVSAMLA 166
>gi|325983556|ref|YP_004295958.1| exonuclease RNase T and DNA polymerase III [Nitrosomonas sp.
AL212]
gi|325533075|gb|ADZ27796.1| Exonuclease RNase T and DNA polymerase III [Nitrosomonas sp.
AL212]
Length = 181
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G + DR + A V D Q + V D+ L
Sbjct: 5 NNNLIWVDMEMTGLNPDNDRIIEVALVITDSQLNTVAEGPVLVVHQPDEIL 55
>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
Length = 1434
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 36/198 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+V++D ET G + + A V+V + E I+ F P +V
Sbjct: 417 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPH---HPLSVTTME 469
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGIT + VE + + F + +N FD + +
Sbjct: 470 LTGITDEMVKDAPDVE-----EVLRRFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKV 524
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + PD + +L L IE H A
Sbjct: 525 I----NP-----VIDTLELARFLYPDL----------KNHRLNTLCKKFDIELTQHHRAI 565
Query: 179 ADVYATLA-LVWLIREKK 195
D AT L+ L++E +
Sbjct: 566 YDAEATGHLLMRLLKEAE 583
>gi|163839979|ref|YP_001624384.1| DNA polymerase III subunit epsilon [Renibacterium salmoninarum ATCC
33209]
gi|162953455|gb|ABY22970.1| DNA polymerase III, epsilon chain [Renibacterium salmoninarum ATCC
33209]
Length = 228
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 32/198 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGITPQ 66
+D ET GRD R + V VD + +ES E AD + PEAV I GI+
Sbjct: 12 FDVETTGRDPRQARLVSASIVLVDANNDVVESHEW----LADPGVEIPEAVTLIHGISTA 67
Query: 67 KALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+A +G E ++ + +F+ T ++ +N +D R
Sbjct: 68 RARAEGAPIGAVVTEVAQVLRSYFAA-GTPVMAFNA-PYDFTVLAAECARI--------- 116
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKAD 180
G S V+ D + DG K L + I ++AH + AD
Sbjct: 117 --GVSAPTAFPVI--------DPFVLDKQVDGFRRGKRTLVAICEHYNIPLIDAHTSAAD 166
Query: 181 VYATLALVWLIREKKPKL 198
AT+ L + + P+L
Sbjct: 167 ALATIKLAEALARRFPEL 184
>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
NG80-2]
Length = 1442
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 36/198 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+V++D ET G + + A V+V + E I+ F P +V
Sbjct: 425 ETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPH---HPLSVTTME 477
Query: 61 -TGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGIT + VE + + F + +N FD + +
Sbjct: 478 LTGITDEMVKDAPDVE-----EVLRRFIDWVGDSTLAAHNASFDIGFLNAGLAKMGLGKV 532
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + PD + +L L IE H A
Sbjct: 533 I----NP-----VIDTLELARFLYPDL----------KNHRLNTLCKKFDIELTQHHRAI 573
Query: 179 ADVYATLA-LVWLIREKK 195
D AT L+ L++E +
Sbjct: 574 YDAEATGHLLMRLLKEAE 591
>gi|207743707|ref|YP_002260099.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
gi|206595106|emb|CAQ62033.1| oligoribonuclease protein [Ralstonia solanacearum IPO1609]
Length = 219
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G DR + A V D + + V +D+ L
Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEIL 77
>gi|83745794|ref|ZP_00942851.1| Oligoribonuclease [Ralstonia solanacearum UW551]
gi|83727484|gb|EAP74605.1| Oligoribonuclease [Ralstonia solanacearum UW551]
Length = 289
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G DR + A V D + + V +D+ L
Sbjct: 98 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEIL 147
>gi|187927908|ref|YP_001898395.1| oligoribonuclease [Ralstonia pickettii 12J]
gi|187724798|gb|ACD25963.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
12J]
Length = 219
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G DR + A V D + + V +D+ L
Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNILAEGPVLVIHQSDELL 77
>gi|256421379|ref|YP_003122032.1| exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
DSM 2588]
gi|256036287|gb|ACU59831.1| Exonuclease RNase T and DNA polymerase III [Chitinophaga pinensis
DSM 2588]
Length = 257
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 29/189 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G +VA DR + A ++V +S + + P + I GI+ +
Sbjct: 14 DLETTGTNVATDRIIEIAIIKVFPD----KSVQTKVKRIHPGMPIPPASTAIHGIS-DED 68
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
++D + + + Q+ N + GYN+ RFD F R D +D + R
Sbjct: 69 IKDCPTFKQCANELRQYM--ENCDLAGYNSNRFDIPLLVEEFLRAGLD-----FDTKDRR 121
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL- 187
+DV + + + + K DL NAH A+AD AT +
Sbjct: 122 --FIDVQKIFHLMEKRTLSAAYK---FYCDK--DLT--------NAHSAEADALATYEIL 166
Query: 188 -VWLIREKK 195
L R ++
Sbjct: 167 EAQLSRYEQ 175
>gi|255542840|ref|XP_002512483.1| exonuclease, putative [Ricinus communis]
gi|223548444|gb|EEF49935.1| exonuclease, putative [Ricinus communis]
Length = 334
Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 46/236 (19%), Positives = 75/236 (31%), Gaps = 53/236 (22%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADD-YLPDPEAVFI 60
+++D ET G +R + A + + F +P+ I
Sbjct: 133 TVIVFDLETTGFSREYERIIEIA-------LQDLHGGENSTFQTLINPGRIVPNSH---I 182
Query: 61 TGITPQKALRDGVVEAE-----FSRRIHQFFSVPNTCI--IGYNNIRFDDYYSRNIFYRN 113
GIT + V E + I P + + +N FD + N F R+
Sbjct: 183 HGITTHMVCKPHVPRMEDLIPILLQYIRSR-QKPGGYVLLVAHNGRSFDVPFLINEFKRS 241
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HV 172
D +W D L + R +W S LQ L A GI+
Sbjct: 242 GVD-VPCNWL----FMDTLPLAR----------KWMKSKGLKISSSLQGLREAFGIKLEG 286
Query: 173 NAHDAKADVYATLALVWL-------IREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
+AH A +DV L L ++ P L + +LI+++
Sbjct: 287 SAHRAMSDVRL---LAKLFQMLTFNLKTTLPSLVAESF------TASELINVKKKK 333
>gi|262194304|ref|YP_003265513.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077651|gb|ACY13620.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 61/193 (31%), Gaps = 31/193 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
V D ET G D + A +RV Q E V +P +D DPEA+ + G
Sbjct: 4 LVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDA--DPEALEVNG 61
Query: 63 ITP---QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
A+ G AE + + + G+N + FD +
Sbjct: 62 YRRRVWADAVSLGDAMAELAPMLE------GAVLAGHN-VAFDRRFL----------EAA 104
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAK 178
W + +A + +P G S L + G+ H A
Sbjct: 105 WDYVGHR------PENLDHHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAF 158
Query: 179 ADVYATLALVWLI 191
DV A L + +
Sbjct: 159 DDVRACLGVARRL 171
>gi|237785314|ref|YP_002906019.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758226|gb|ACR17476.1| hypothetical protein ckrop_0715 [Corynebacterium kroppenstedtii DSM
44385]
Length = 616
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 62/191 (32%), Gaps = 37/191 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ FV+ D ET G DR + V++ E+I F L P I
Sbjct: 30 VNTTFVVVDLETTGLSAHEDRIIEIGAVKI-HGGEEISRFSTF---VDPGRLIPPLITNI 85
Query: 61 TGITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGI+ G EA+ + F+ T ++ +N RFD + + +
Sbjct: 86 TGISDDDVN--GAPKEAQAVKDFL-EFAR-GTVLVAHNA-RFDIGFLQAA---SMRAHIT 137
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA----- 174
W L M A SFKL LA H +A
Sbjct: 138 WPQPTHLCTLVLARTMLDRCAV--------------GSFKLSSLA-----RHFHATTTPT 178
Query: 175 HDAKADVYATL 185
H A D AT+
Sbjct: 179 HRALDDALATV 189
>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
Length = 1433
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V++ E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKIKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLA------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
Length = 1433
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V++ E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKIKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLA------ 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 522 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
Length = 1435
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V++ E I+ E F + +TG
Sbjct: 418 ETYVVFDVETTGLSAVYDTVIELAAVKIKGG-EIIDRFESFA---NPHQPLSATIIELTG 473
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F +
Sbjct: 474 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLA------ 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KTNNP---VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 570
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 571 ATGYLLVKMLKDVIEKGFEY 590
>gi|163756168|ref|ZP_02163283.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
gi|161323780|gb|EDP95114.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
Length = 454
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 48/221 (21%), Positives = 78/221 (35%), Gaps = 31/221 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G + + A R D E ++ + P V +TGI
Sbjct: 2 YAIVDIETTGGKYNEEGITEIAIYRFDGH-EVVDQFISL---VNPEREIQPFVVNLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ LRD E ++RI + CII +N FD + F R + +
Sbjct: 58 -SRMLRDAPKFYEVAKRIVEITED---CIIVAHNASFDYRILQLEFKRLGF-----EYKR 108
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+ + P+ S+KL L A GI + H A D AT
Sbjct: 109 KSLC-----TVELSKKLIPE----------MESYKLGKLVRALGIPMSDRHRASGDALAT 153
Query: 185 LALVWLI--REKKPKLFEYLYDYRNKNQLRK-LIDIQNMTP 222
+ L L+ ++ + + + K ++ L+DI P
Sbjct: 154 VKLFQLLLDKDSEKNIIQQAVKTEIKKKVATRLLDILENLP 194
>gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 244
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIEVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|221632241|ref|YP_002521462.1| DNA polymerase III subunit epsilon [Thermomicrobium roseum DSM
5159]
gi|221156344|gb|ACM05471.1| DNA polymerase III, epsilon subunit [Thermomicrobium roseum DSM
5159]
Length = 693
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 57/184 (30%), Gaps = 29/184 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFI 60
FV D ET G A R + VR +E V LP V +
Sbjct: 83 PRSFVALDVETTGLRPARHRIIEIGAVRY-EDGCCVERFSVL---VNPHRRLPV-YIVRL 137
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI + L + F +T IGYN + FD + R
Sbjct: 138 TGIRDEDLLT--APSFVDVAAAFRVFLGESTV-IGYN-VGFDLDFLNAELRRIGQGPLP- 192
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D+L + RA+ +G + L + + G+ H A D
Sbjct: 193 -----NPALDVLPLARAL-----------LTANGR--YDLDAICRSIGLARGTRHRALPD 234
Query: 181 VYAT 184
AT
Sbjct: 235 AEAT 238
>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
Length = 1436
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 44/204 (21%), Positives = 68/204 (33%), Gaps = 36/204 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ ++++D ET G D + A V+V E I+ E F + + +TG
Sbjct: 419 STYIVFDVETTGLSANYDTIIELAAVKV-FDGEIIDRFERFA---NPHHPLSATTINLTG 474
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNT-CIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + E + F I+ +N FD + + R
Sbjct: 475 ITDD--MVKDAPE---VSEVVTDFKKWAEDGILVAHNASFDMGFLNISYQRAGLK----- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAK 178
N D L++ R +Y S K L LA +E H A
Sbjct: 525 -KASNPVIDTLELARFLY----------------PSMKNHRLNTLAKKLDVELTQHHRAI 567
Query: 179 ADVYAT-LALVWLIREKKPKLFEY 201
D AT L L++E K +Y
Sbjct: 568 YDAEATGYILAKLLKETYEKEIKY 591
>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
Length = 1442
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HDGEIIDKFERFS---NPHERLSETIINLTHI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 481 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 531 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 575
Query: 182 YAT 184
AT
Sbjct: 576 EAT 578
>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
Length = 245
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
M+ +I D ET G DR +FAG+ D + P D +P
Sbjct: 1 MSQRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+ EA + G+T + + F II +N +FD + F R
Sbjct: 53 E-EAAKVHGLTIEVLEAKNAPPFAQVGKQIADFIRGAELII--HNAKFDVGFLNMEFRRM 109
Query: 114 FYDSYRWSWDNGNSRWDLLDVMR 136
S + G D L + R
Sbjct: 110 GLPSIE---ELGCKVTDTLAMAR 129
>gi|311694144|gb|ADP97017.1| DNA polymerase III, epsilon subunit [marine bacterium HP15]
Length = 235
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 62/183 (33%), Gaps = 29/183 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + + D V + I + ++ +P D E V I GI P
Sbjct: 45 DLETTGLNPSKDEVIAIGAVAIRGG--IIHLGDQFDLILRRPELDIR---ETVLIHGIGP 99
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+AL G + + ++ + I+ Y++ FD + + +W +
Sbjct: 100 -EALTQGHEIEDALLYLLEWMNGDP--ILAYHS-AFDQKFLEKTLKAQLGYTQPHTWMD- 154
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
DL+ P+ G L + A G+E H A +D AT
Sbjct: 155 --VADLMPAFF------------PNTKTGGKG--LDNWADYFGLEVSERHHAASDALATA 198
Query: 186 ALV 188
L
Sbjct: 199 ELT 201
>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
Length = 231
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G E + + +S + + +N FD + + + N+
Sbjct: 55 MVKGSDPIEVVLQRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------KAKNAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|152985597|ref|YP_001350999.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
gi|166216274|sp|A6VD64|ORN_PSEA7 RecName: Full=Oligoribonuclease
gi|150960755|gb|ABR82780.1| oligoribonuclease [Pseudomonas aeruginosa PA7]
Length = 180
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 33/131 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+ + D E G D D + A + D + V + PE V
Sbjct: 4 PQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVI-------AIHQPEEVLAG 56
Query: 61 -----------TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDD 103
+G+T Q+ V AE + F C N+I D
Sbjct: 57 MDEWNTRQHGQSGLT-QRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICG---NSICQD- 111
Query: 104 YYSRNIFYRNF 114
R YR+
Sbjct: 112 ---RRFLYRHM 119
>gi|307132771|ref|YP_003884787.1| oligoribonuclease [Dickeya dadantii 3937]
gi|306530300|gb|ADN00231.1| oligoribonuclease [Dickeya dadantii 3937]
Length = 183
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 8 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE 44
>gi|238750960|ref|ZP_04612457.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC
43380]
gi|238710874|gb|EEQ03095.1| Exonuclease RNase T and DNA polymerase III [Yersinia rohdei ATCC
43380]
Length = 180
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 61/189 (32%), Gaps = 30/189 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYLP-DPEAVF 59
+ FV D ET G L + + +V F+ + D DPEA+
Sbjct: 4 SEIFVSVDIETSGPVPGLFSLLSIGA-------CLVHAPDVRFYAELKPDCTGFDPEALA 56
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFS---VPN--TCIIGYNNIRFDDYYSRNIFYR-N 113
+TG Q G+ A+ ++ + + P+ G N FD + F++
Sbjct: 57 VTGFNLQALATTGIAPADAMLQLSTWLTSHLQPSQKPVFTGLNA-PFDWSFINYYFHKYT 115
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + G S D+ Y G W + +S Q L+ H
Sbjct: 116 GNNPF------GFSALDI-----KAYFMGATGCTW---SETKSSMMTQRLSAKGRPSHNA 161
Query: 174 AHDAKADVY 182
DA
Sbjct: 162 LDDALFQAE 170
>gi|94500535|ref|ZP_01307066.1| oligoribonuclease [Oceanobacter sp. RED65]
gi|94427325|gb|EAT12304.1| oligoribonuclease [Oceanobacter sp. RED65]
Length = 185
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + A DR + A + D + +
Sbjct: 10 HNLIWIDLEMTGLEPAQDRIIEIATIVTDSELNVLAE 46
>gi|114320658|ref|YP_742341.1| oligoribonuclease [Alkalilimnicola ehrlichii MLHE-1]
gi|122311672|sp|Q0A8I6|ORN_ALHEH RecName: Full=Oligoribonuclease
gi|114227052|gb|ABI56851.1| Exonuclease, RNase T and DNA polymerase III [Alkalilimnicola
ehrlichii MLHE-1]
Length = 193
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ V D E G D DR + A + D Q + V + ++ L
Sbjct: 6 HNLVWLDLEMTGLDPDTDRIIEIATLVTDSQLNILAEGPVLAVRQSEQAL 55
>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
19424]
gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
19424]
Length = 246
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 57/179 (31%), Gaps = 31/179 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + A DR + V + F+ P D D A+ + GIT +
Sbjct: 10 DTETTGLNAATGDRLIEIGCVEL-MNRRLTGRHLHFYVNPERDI--DEGAIAVHGITVEF 66
Query: 68 ALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
F+ +H + F II +N +FD + F +R G
Sbjct: 67 LADK----PRFAEVVHDIREFVQDAELII--HNAQFDLGFLDMEFQLLGLPPFR--QHVG 118
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
N ++D +R P S L L GI H H A D
Sbjct: 119 N----VIDTLREARQMFPG---------KRNS--LDALCERLGISNAHRKLHGALLDAE 162
>gi|74317857|ref|YP_315597.1| oligoribonuclease [Thiobacillus denitrificans ATCC 25259]
gi|123611601|sp|Q3SHU1|ORN_THIDA RecName: Full=Oligoribonuclease
gi|74057352|gb|AAZ97792.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
Length = 182
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 48/206 (23%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
H + D E G DR + A V D + V + P+AV
Sbjct: 5 PTHLLWLDMEMTGLSPESDRIIELAIVVTDADLNTVAEGPVL-------VVHQPDAVMDA 57
Query: 60 -------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSR 107
G + + + E++ ++ +F P T + N+I D R
Sbjct: 58 MDSWNRGTHGKSGLIDRVKASQLSESDAEAQMLEFVKQHVSPRTSPMCGNSICQD----R 113
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
R+ + N D+ + + P L A
Sbjct: 114 RFMARHM-PELEAFFHYRN--LDVSTLKELAKRWRP------------------GLCDA- 151
Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
+ N H+A AD+Y ++ + RE
Sbjct: 152 -FKKSNKHEALADIYESIDELRYYRE 176
>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
Length = 1433
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V++ E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKIKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGLE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|213962149|ref|ZP_03390413.1| exonuclease [Capnocytophaga sputigena Capno]
gi|213955155|gb|EEB66473.1| exonuclease [Capnocytophaga sputigena Capno]
Length = 258
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 49/200 (24%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
++ +D ET G D+ DR + + ++V + ++ + P +P P+A
Sbjct: 5 LSKPICFFDLETTGIDITKDRIVEISILKVYPNGN--KESKTWLVNPT---IPIPKAASD 59
Query: 60 ITGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ GIT ++ E F +++IH + + GYN+ RFD R D
Sbjct: 60 VHGITDERVA----CEPTFKELAKQIHNMIKDSD--LAGYNSDRFDIPLLAEEMLRAEVD 113
Query: 117 SYRWSWDNGNS-RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GI 169
+D GN D+ + K++ L+ A G
Sbjct: 114 -----FDLGNRVSVDVQTIFH----------------------KMEQRTLSAAYKFYCGK 146
Query: 170 EHVNAHDAKADVYATLALVW 189
+ ++AH A AD AT ++
Sbjct: 147 DLIDAHTASADTNATYEILK 166
>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
Length = 1476
Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 46/203 (22%), Positives = 61/203 (30%), Gaps = 48/203 (23%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + P Q A D IE DYL
Sbjct: 2 YLIFDTETTGLPRNWNAPLSDSDNWPRCIQIAWQLHDEMGNVIEH---------QDYLVQ 52
Query: 55 PE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
PE A I GI+ + A G+ + + + T + N+ FD
Sbjct: 53 PEGFNIPFDAEKIHGISTELAAAKGISLEDMMAKFQEVLGK--TKFLVGQNVGFDLNIMG 110
Query: 108 NIFYR-NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLAL 165
F R + LLD A Q G FKL L
Sbjct: 111 AEFLRLGLENPLP--------DMPLLDTCTEATA------QLCQIAGGRYGKFKLPTLTE 156
Query: 166 ANGI----EHVNAHDAKADVYAT 184
+ AH+A ADV AT
Sbjct: 157 LHQFLFNSPFGEAHNATADVEAT 179
>gi|228996755|ref|ZP_04156392.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
Rock3-17]
gi|228763074|gb|EEM11984.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides
Rock3-17]
Length = 930
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 29/189 (15%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G DR Q A V V+ +I F P + +P P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDRITQIAAVVVEDG--EILEIFSSFVNPKRE-IP-PFIT 56
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI + ++ + + + + + I +N + FD + + + Y
Sbjct: 57 ELTGID-ENLVKQAPLFCDVAPMVAELLQ--GAYFIAHN-VHFDWNFLKEELKQAGYGEV 112
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 113 ------NCPKIDTVELAQ---------ILLPTAD----SYKLRDLAKKHELEHDQPHRAD 153
Query: 179 ADVYATLAL 187
+D T L
Sbjct: 154 SDALVTAEL 162
>gi|300361735|ref|ZP_07057912.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
gasseri JV-V03]
gi|300354354|gb|EFJ70225.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
gasseri JV-V03]
Length = 937
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKTYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNRDVAQARDFKY-YAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAIDTVELAQIAFPT----------FPSYKLRDLTARLKIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|46202557|ref|ZP_00053013.2| COG5002: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 711
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 59/235 (25%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVR-------VDRQWEKIESTEVFFCKPADDYLPDP 55
FV++D ET G + D+ AGVR + +I + PA
Sbjct: 517 TFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPG--RSIPA------- 567
Query: 56 EAVFITGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
E++ GIT + + GVV +F + ++ +N FD + R
Sbjct: 568 ESIRYHGITDEMVIDKPPAGVVLPQFRSYVAD-------AVLVAHNAAFDLKFLR----- 615
Query: 113 NFYDSYRWSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+ G R+D +LD M + S L D+ GIE
Sbjct: 616 ------MREKEMGV-RFDSPVLDTMILSNFLD--------GPEAGHS--LDDICERYGIE 658
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
+ H A D T A+ L+R+ + + R + L + + ++ ++H
Sbjct: 659 ITDRHTALGDSMVTAAV--LLRQIE------ALEGRGIHTLDQAVKTLDIAMILH 705
>gi|222099149|ref|YP_002533717.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
4359]
gi|281411717|ref|YP_003345796.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
RKU-10]
gi|221571539|gb|ACM22351.1| DNA polymerase III, epsilon subunit [Thermotoga neapolitana DSM
4359]
gi|281372820|gb|ADA66382.1| DNA polymerase III, epsilon subunit [Thermotoga naphthophila
RKU-10]
Length = 186
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 41/196 (20%)
Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWE-KIESTEVFFCKPADDY-LPDPEAVF-- 59
F + D ET G D DR + A V V ++ KI S F +P A+
Sbjct: 8 FCVVDTETTGTDPFGGDRIIEIAAVPV---FKGKIFSNRAFHSLVNPHVRIP---ALIQK 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GI+ ++ V EA +++ F V T ++ ++N FD + +
Sbjct: 62 VHGISNEE-----VEEAPDMGTVYERFRDYVKGTVLV-FHNANFDLTFL------DMMAK 109
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ N+ D LD+ + ++ P ++W L GI H A
Sbjct: 110 ETRNFPLTNAYIDTLDISQEVFG-RPHSLKW--------------LCEKLGIRDKIEHRA 154
Query: 178 KADVYATLAL-VWLIR 192
+D T + V L++
Sbjct: 155 LSDALVTAKVFVRLVK 170
>gi|295689870|ref|YP_003593563.1| exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
21756]
gi|295431773|gb|ADG10945.1| Exonuclease RNase T and DNA polymerase III [Caulobacter segnis ATCC
21756]
Length = 298
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 46/209 (22%), Positives = 66/209 (31%), Gaps = 37/209 (17%)
Query: 9 DYETFGRDVALDRPAQFAGV--RVDRQWEK--IESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G D A D +F V D + +P+ +P P+ +TG+T
Sbjct: 48 DLETTGLDPAKDEIIEFGLVPFTYDAGGRIVAVGEPFSRLRQPS-GPIP-PDVTKLTGLT 105
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
V AE + I +I +N FD ++ + S+
Sbjct: 106 DAMVAGQVVDPAEVATFID------GAALIIAHNAGFDRRFAEAFCPAFAQKPWACSYTQ 159
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
I W + G S KL LA A G H H A D AT
Sbjct: 160 ---------------------IDW--QAHGHESGKLAFLACAYGFFHDG-HRAHHDCLAT 195
Query: 185 LA-LVWLIREKKPKLFEYLYDYRNKNQLR 212
L L + F+ L + +R
Sbjct: 196 LEILASPLGATDGSAFQTLLATARRASVR 224
>gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
DGI18]
gi|240117765|ref|ZP_04731827.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
PID1]
gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
PID24-1]
gi|240125570|ref|ZP_04738456.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
SK-92-679]
gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
Length = 244
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 24/144 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT ++ D ET G DR +FAG+ D+ + P D +P
Sbjct: 2 MTRQIIL-DTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T Q AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 VGLPTVE---ELGCTVTDTLAMAR 129
>gi|237747031|ref|ZP_04577511.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
gi|229378382|gb|EEO28473.1| oligoribonuclease [Oxalobacter formigenes HOxBLS]
Length = 218
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D DR + A V D + V+ D+ L
Sbjct: 44 NLIWVDLEMTGLDPETDRIIEVALVVTDPDLNILAEGPVYAIHQPDEIL 92
>gi|261867655|ref|YP_003255577.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412987|gb|ACX82358.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 182
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V + D L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIRQPDALL 55
>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium D344SRF]
gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium D344SRF]
Length = 1452
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 478
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + G E R+ FS +T ++ +N FD + + R+
Sbjct: 479 TGIT--DGMVRGSKSEEEVLRMFLEFSK-DTILVAHNA-AFDMGFLNTSYARHGIPEAA- 533
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 534 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 575
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 576 AEATGHLAWIF 586
>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 1439
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 50/235 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAV 58
+ + FVI+D ET G + D + +++ + + F +P +
Sbjct: 422 LDDTFVIFDIETTGFSMTNDNIIEIGAIKIKEG-KVVGKFSEFVNPERPIPLTI-----T 475
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT + E + I F N+ ++ +N FD + +
Sbjct: 476 QLTGITDEMVQN-----CESIKYILPKFMEFIDNSVVVAHNA-NFDVGFIKKNCM----- 524
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N ++D + P+ FKL +A I N H
Sbjct: 525 ELNLKFKNP-----VMDTIPLCKFLFPEL----------KRFKLNVVAKHLDISLENHHR 569
Query: 177 AKADVYATLALV----WLIREKKPKLFEYLYDYR--NKNQLRKLIDIQNMTPLVH 225
A D AT ++ +++EK + NK L ID++ P+ H
Sbjct: 570 AVDDAGATCEILLRCFKMLKEKN------ILSLGDLNKEFLSN-IDVKK-QPMYH 616
>gi|90407113|ref|ZP_01215302.1| oligoribonuclease [Psychromonas sp. CNPT3]
gi|90311835|gb|EAS39931.1| oligoribonuclease [Psychromonas sp. CNPT3]
Length = 179
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + D + A + D +E
Sbjct: 4 NNLIWIDLEMTGLNPETDLIIEIATIVTDSDLNVLEE 40
>gi|47566006|ref|ZP_00237044.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
cereus G9241]
gi|47556923|gb|EAL15253.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
cereus G9241]
Length = 934
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 31/190 (16%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP----- 53
Query: 59 FITGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
FIT +T +++ + + + +N + FD + + Y
Sbjct: 54 FITELTGIDESMVKQAPLFQDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTE 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ D +++ I P+ D S+KL+DLA + +EH H A
Sbjct: 112 I------HCPKVDTVEL---------GQILLPTAD----SYKLRDLAKQHELEHDQPHRA 152
Query: 178 KADVYATLAL 187
+D AT L
Sbjct: 153 DSDALATAEL 162
>gi|258620689|ref|ZP_05715724.1| oligoribonuclease [Vibrio mimicus VM573]
gi|258586887|gb|EEW11601.1| oligoribonuclease [Vibrio mimicus VM573]
Length = 181
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIVIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + V E E + F C N+I D R YR
Sbjct: 66 HTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICG---NSIGQD----RRFLYR 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|271502182|ref|YP_003335208.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
Ech586]
gi|270345737|gb|ACZ78502.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
Ech586]
Length = 180
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE 41
>gi|332878163|ref|ZP_08445892.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683901|gb|EGJ56769.1| DNA polymerase III, alpha subunit [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 1486
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 26/192 (13%)
Query: 5 FVIYDYETFGR----------DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G R Q A D QW + + F P +P
Sbjct: 2 YLIFDTETTGLPRNYNAPISDSNNWPRAVQIAWQLHD-QWGALIEHQDFLIAPDGFDIPY 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+A + GI+ A + GV AE ++ S ++G NI FD FYR
Sbjct: 61 -DAEKVHGISTLLAEKQGVPIAEVFAAFNEALSKAQ-YVVG-QNIGFDINIMGAEFYRYG 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF--KLQDLALANGIEHV 172
+ S D L V+ + + + G F + + G+
Sbjct: 118 VE----------SPLDKLPVIDTCTEATANLCKIEGGRGGKYKFPSLTELHSFLFGVPFA 167
Query: 173 NAHDAKADVYAT 184
AH+A ADV AT
Sbjct: 168 EAHNATADVEAT 179
>gi|291537849|emb|CBL10960.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis XB6B4]
Length = 226
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 34/184 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
+V+YD ET G D + + V+V R + ++ P P A +
Sbjct: 15 PDYVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGR-PIPYAASSVN 69
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I+ + E EF F+ + + G+N FD + + F +
Sbjct: 70 NISDKMVENARSFEKVLPEFLA-----FAG-DDVLAGHNIAGFDMKFLYRDCEKYFGQTL 123
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N D L + + + P+ W R +L DLA GI AH A
Sbjct: 124 T------NDYIDTLAIAKLCF---PE---WKHR-------RLSDLAEHYGISTKGAHRAL 164
Query: 179 ADVY 182
AD
Sbjct: 165 ADCR 168
>gi|291537711|emb|CBL10823.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis M50/1]
Length = 226
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 34/184 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
+V+YD ET G D + + V+V R + ++ P P A +
Sbjct: 15 PDYVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGR-PIPYAASSVN 69
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I+ + E EF F+ + + G+N FD + + F +
Sbjct: 70 NISDKMVENARSFEKVLPEFLA-----FAG-DDVLAGHNIAGFDMKFLYRDCEKYFGQTL 123
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N D L + + + P+ W R +L DLA GI AH A
Sbjct: 124 T------NDYIDTLAIAKLCF---PE---WKHR-------RLSDLAEHYGISTKGAHRAL 164
Query: 179 ADVY 182
AD
Sbjct: 165 ADCR 168
>gi|254463814|ref|ZP_05077225.1| exonuclease, DNA polymerase III, epsilon subunit family
[Rhodobacterales bacterium Y4I]
gi|206684722|gb|EDZ45204.1| exonuclease, DNA polymerase III, epsilon subunit family
[Rhodobacterales bacterium Y4I]
Length = 469
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 62/190 (32%), Gaps = 36/190 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITG 62
+V++D ET G D Q +RV R +I + E F P P A + G
Sbjct: 276 SYVVFDTETTGLLPHKDEIVQIGALRVVR--NRIVAGEQFGTLVDPGT-PIPAASTKVHG 332
Query: 63 ITPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I+ A+ G + + +R H+F S +I +N FD + R
Sbjct: 333 IS--DAMVQGAPDIGQAARAFHRFASD---AVIVAHNAPFDMAFLR------------RH 375
Query: 122 WDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDA 177
WD +LD + S L L + A H A
Sbjct: 376 AKRAGVSWDQPVLDTVLLSAVLFGAS----------QSHTLDALCERLEVTIPPALRHTA 425
Query: 178 KADVYATLAL 187
D AT +
Sbjct: 426 MGDAQATAEV 435
>gi|253996722|ref|YP_003048786.1| oligoribonuclease [Methylotenera mobilis JLW8]
gi|253983401|gb|ACT48259.1| Exonuclease RNase T and DNA polymerase III [Methylotenera mobilis
JLW8]
Length = 186
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
N+ + D E G DR + A V D + + VF +D+ L D
Sbjct: 11 NNLIWLDMEMSGLLPDSDRVLELAAVVTDADLNVLAESPVFVVHQSDEVLDGMDAWNKGA 70
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFS 87
G + K + EAE S ++ +F
Sbjct: 71 HGRSGLIDKVKASTLSEAEASAQMIEFLK 99
>gi|242237928|ref|YP_002986109.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
Ech703]
gi|242129985|gb|ACS84287.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
Ech703]
Length = 180
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNVLAE 41
>gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
NCCP11945]
gi|239998794|ref|ZP_04718718.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
35/02]
gi|240112723|ref|ZP_04727213.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
MS11]
gi|240115471|ref|ZP_04729533.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
PID18]
gi|240123321|ref|ZP_04736277.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
PID332]
gi|240128023|ref|ZP_04740684.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
SK-93-1035]
gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
gi|260440719|ref|ZP_05794535.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
DGI2]
gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
NCCP11945]
gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 244
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 24/144 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT ++ D ET G DR +FAG+ D+ + P D +P
Sbjct: 2 MTRQIIL-DTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T Q AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|290474872|ref|YP_003467752.1| Exonuclease [Xenorhabdus bovienii SS-2004]
gi|289174185|emb|CBJ80974.1| Exonuclease [Xenorhabdus bovienii SS-2004]
Length = 186
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 34/195 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFITGITPQ 66
D ET G + V + + + D P DPE++ +TG+
Sbjct: 11 DVETSGPVPGVFSLLSIGACLVHQA------EVAIYLELQPDS-PEHDPESLAVTGLDLM 63
Query: 67 KALRDGVVEAEFSRR---IHQFFSVPN--TCIIGYNNIRFDDYYSRNIFYRN-FYDSYRW 120
+ +DG+ + + + P +G N FD + FY+ + +
Sbjct: 64 QLEQDGLPPSAAMHQFKVWIESVIDPGQKAIFVGLN-TPFDWSFINYYFYKYVGINPF-- 120
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
G + D+ Y G W S L+ N H+A D
Sbjct: 121 ----GFTAIDIKAYFMGAY-----GYSWSETKSSHMSAILKPCTKPN-------HNALED 164
Query: 181 VYATLALVWLIREKK 195
L L+ ++
Sbjct: 165 ARFQAELFALMLARQ 179
>gi|240146656|ref|ZP_04745257.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
gi|257201200|gb|EEU99484.1| DNA polymerase III, alpha chain [Roseburia intestinalis L1-82]
Length = 226
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 34/182 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
+V+YD ET G D + + V+V R + ++ P P A + I
Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSEL---VNPGR-PIPYAASSVNNI 71
Query: 64 TPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ + E EF F+ + + G+N FD + + F +
Sbjct: 72 SDKMVENARSFEKVLPEFLA-----FAG-DDVLAGHNIAGFDMKFLYRDCEKYFGQTLT- 124
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N D L + + + P+ W R KL DLA GI AH A AD
Sbjct: 125 -----NDYIDTLAIAKLCF---PE---WKHR-------KLSDLAEHYGISTKGAHRALAD 166
Query: 181 VY 182
Sbjct: 167 CR 168
>gi|154246367|ref|YP_001417325.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
Py2]
gi|154160452|gb|ABS67668.1| DNA polymerase III, epsilon subunit [Xanthobacter autotrophicus
Py2]
Length = 719
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 45/202 (22%)
Query: 5 FVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEA-VFI 60
+ ++D ET G D A D Q R+ C + D PEA + +
Sbjct: 529 YTVFDTETTGLDPAGGDEILQIGATRI-----VNGRLLASECFDQLVDPQRSIPEAGIAV 583
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI P+ + ++ F +T ++G+N + FD R + +
Sbjct: 584 HGIRPEMVRGKPTLP-----QVLPAFHAFAADTVLVGHN-VAFD---MRFLTLK------ 628
Query: 119 RWSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+G R+D +LD + P G S L+ +A GI H
Sbjct: 629 --ENASGV-RFDQPVLDTLLLAAIVHP----------GEDSHGLEAMAARLGIAVSGRHT 675
Query: 177 AKADVYAT----LALVWLIREK 194
A D AT L L+ L+R++
Sbjct: 676 ALGDALATAEIFLKLLPLLRQR 697
>gi|308235755|ref|ZP_07666492.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14018]
Length = 301
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 34/193 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ + + D ET G D + +RV E ++ + KP+ + D +TG
Sbjct: 14 DDYCVLDTETTGLSAYYDEIIEIGILRVRNN-EIVDRYDQLI-KPSIEV--DGFITALTG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT S + S + I+G+N FD + F + Y
Sbjct: 70 ITNDMLED----MPSISSVKNDVLSFISEDIILGHNT-SFDMRFLNEGFKEQLSNQY--- 121
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D M+ P+ +L DL G+ H N H A AD
Sbjct: 122 ----------MDTMQFARKLYPEL----------KHHRLSDLTDYLGL-HNNEHRALADC 160
Query: 182 YATLALVWLIREK 194
AT L ++ +
Sbjct: 161 IATKELYDAVKSR 173
>gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
FA6140]
Length = 244
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 24/144 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT ++ D ET G DR +FAG+ D+ + P D +P
Sbjct: 2 MTRQIIL-DTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T Q AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 VGLPTVE---ELGCTVTDTLAIAR 129
>gi|311114663|ref|YP_003985884.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
gi|310946157|gb|ADP38861.1| DNA polymerase III PolC [Gardnerella vaginalis ATCC 14019]
Length = 307
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 65/193 (33%), Gaps = 34/193 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ + + D ET G D + +RV E ++ + KP+ + D +TG
Sbjct: 20 DDYCVLDTETTGLSAYYDEIIEIGILRVRNN-EIVDRYDQLI-KPSIEV--DGFITALTG 75
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT S + S + I+G+N FD + F + Y
Sbjct: 76 ITNDMLED----MPSISSVKNDVLSFISEDIILGHNT-SFDMRFLNEGFKEQLSNQY--- 127
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D M+ P+ +L DL G+ H N H A AD
Sbjct: 128 ----------MDTMQFARKLYPEL----------KHHRLSDLTDYLGL-HNNEHRALADC 166
Query: 182 YATLALVWLIREK 194
AT L ++ +
Sbjct: 167 IATKELYDAVKSR 179
>gi|84386967|ref|ZP_00989991.1| oligoribonuclease [Vibrio splendidus 12B01]
gi|84378257|gb|EAP95116.1| oligoribonuclease [Vibrio splendidus 12B01]
Length = 181
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 40/201 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
++ V E E ++ +F C N+I D R Y+
Sbjct: 66 HTGSGLVKRIQESTVSEQEAIQQTIEFLEKWVPKGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + D+ + + P+ + G
Sbjct: 119 HM--PELEEYFHY-RYVDVSTLKELTRRWKPEVLD--------------------GFSKS 155
Query: 173 NAHDAKADVYATLALVWLIRE 193
+H A D+ ++A + R+
Sbjct: 156 GSHLALDDIRESIAELQYYRK 176
>gi|229822935|ref|ZP_04449005.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
gi|229787748|gb|EEP23862.1| hypothetical protein GCWU000282_00227 [Catonella morbi ATCC 51271]
Length = 828
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 31/192 (16%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
D ET G + D+ Q V + + + + + +P ITGI
Sbjct: 12 DLETTGSHLDQGDQIIQIGAVLI-EDGQVLAQHSML---LNPERNIPT-HITAITGIQSD 66
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ +D ++ + ++ C +N+ FD + + F D +
Sbjct: 67 QV-QDAPTFSQVAGLWYERLKD---CFFVAHNLGFDLTFLQAKFAEQGLD-----FQPP- 116
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
LD ++ F P F LQDL+ G+ +AHDA D T
Sbjct: 117 ----ALDTVQLAKIFLPQA----------PGFNLQDLSQFFGLNFQDAHDALGDARMTAH 162
Query: 187 LVWLIREKKPKL 198
L+ ++ + L
Sbjct: 163 LLDVLAHQAADL 174
>gi|109899782|ref|YP_663037.1| oligoribonuclease [Pseudoalteromonas atlantica T6c]
gi|122971629|sp|Q15Q55|ORN_PSEA6 RecName: Full=Oligoribonuclease
gi|109702063|gb|ABG41983.1| Exonuclease, RNase T and DNA polymerase III [Pseudoalteromonas
atlantica T6c]
Length = 181
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ V D E G +D + A + D + V +DD L
Sbjct: 5 AQNLVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDDVL 55
>gi|59801359|ref|YP_208071.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
FA 1090]
gi|240080918|ref|ZP_04725461.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
FA19]
gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
FA 1090]
gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
Length = 244
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 24/144 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT ++ D ET G DR +FAG+ D+ + P D +P
Sbjct: 2 MTRQIIL-DTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T Q AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIQVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 VGLPTVE---ELGCTVTDTLAMAR 129
>gi|325577877|ref|ZP_08148110.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
gi|325160307|gb|EGC72434.1| oligoribonuclease [Haemophilus parainfluenzae ATCC 33392]
Length = 200
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 24 QNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELL 73
>gi|149377531|ref|ZP_01895272.1| oligoribonuclease [Marinobacter algicola DG893]
gi|149358223|gb|EDM46704.1| oligoribonuclease [Marinobacter algicola DG893]
Length = 180
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ V D E G D +R + A + D IE
Sbjct: 4 ANYLVWIDLEMTGLDPEKERIIEIATIVTDSDLNTIEE 41
>gi|294632065|ref|ZP_06710625.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
gi|292835398|gb|EFF93747.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
Length = 240
Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 10/116 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGITPQ 66
+D ET G D R A + V AD +P P+AV + GI+ +
Sbjct: 11 FDLETTGTDPRTARIVTAAVIEVRD-----GEPAGRREWLADPGVPIPPDAVAVHGISTE 65
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+A +G + I + + ++ YN FD R S
Sbjct: 66 RAAAEGQPADRVADAIAEALTGYWRAGVPVVAYNA-AFDLTLLSAELRRYGLPSLA 120
>gi|257094696|ref|YP_003168337.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047220|gb|ACV36408.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 729
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 45/191 (23%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDP------ 55
+ ++D ET G + D Q R + + C D L DP
Sbjct: 538 SYTVFDTETTGLQPSQGDEIIQIGATR------IVNRRLLRHECF---DQLIDPRRPLSQ 588
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+++ + GIT + + G + Q F +T ++G+N FD + +
Sbjct: 589 QSIEVHGITRELLV--GQPTIDTVLPQFQTFCA-DTVLVGHNA-AFDMRFLQ-------- 636
Query: 116 DSYRWSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
G R+D +LD + P+ S +L+ +A G+
Sbjct: 637 ---LKEKQTGV-RFDQPVLDTLLLSAVLHPN----------QNSHRLEAIAERLGVSVFG 682
Query: 174 AHDAKADVYAT 184
H A D T
Sbjct: 683 RHTALGDAMVT 693
>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU144]
Length = 1438
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis FRI909]
Length = 1438
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus caprae C87]
gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus caprae C87]
Length = 1442
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 481 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 531 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 575
Query: 182 YAT 184
AT
Sbjct: 576 EAT 578
>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis SK135]
gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis SK135]
Length = 1438
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
Length = 1442
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 481 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 531 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 575
Query: 182 YAT 184
AT
Sbjct: 576 EAT 578
>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
Length = 1442
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 481 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 531 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 575
Query: 182 YAT 184
AT
Sbjct: 576 EAT 578
>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus capitis SK14]
gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus capitis SK14]
Length = 1438
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis
M23864:W2(grey)]
gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis RP62A]
gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 1436
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 475 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU028]
gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU045]
Length = 1438
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus
epidermidis ATCC 12228]
Length = 1442
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 481 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 531 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 575
Query: 182 YAT 184
AT
Sbjct: 576 EAT 578
>gi|90022321|ref|YP_528148.1| oligoribonuclease [Saccharophagus degradans 2-40]
gi|89951921|gb|ABD81936.1| Exonuclease [Saccharophagus degradans 2-40]
Length = 181
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 50/211 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N+ + D E G D + A + D Q + + + P+AV
Sbjct: 6 NNLIWIDLEMTGLVPDRDVIIEIATIVTDAQLNVLAEGPML-------AIAQPKAVMDGM 58
Query: 60 ---------ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI---IGYNNIRFDDYYSR 107
+G+T ++ L V A ++ +F I N+I D R
Sbjct: 59 DEWNTNQHGKSGLT-ERVLNSAVSTAMAEQQTIEFLQQWVPAGKSPICGNSIGQD----R 113
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
R + + N D+ + + P+ + N
Sbjct: 114 RFLAR-YMPRLEAYFHYRN--LDVSTLKELAVRWKPEVL--------------------N 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G AH A D+ ++A + RE KL
Sbjct: 151 GFTKKGAHLALDDIKDSIAELKHYREHFIKL 181
>gi|254509115|ref|ZP_05121216.1| oligoribonuclease [Vibrio parahaemolyticus 16]
gi|219547953|gb|EED24977.1| oligoribonuclease [Vibrio parahaemolyticus 16]
Length = 181
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 54/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA----- 57
+ + D E G D + + A + D + + V + PE+
Sbjct: 6 QNLIWMDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVL-------AIHQPESELEKM 58
Query: 58 ---VFITGI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYY 105
T + V E + R+ +F C N+I D
Sbjct: 59 DEWCTTTHTGSGLVARVRASQVTEQDAIRQTIEFLEKWVPKGKSPICG---NSIGQD--- 112
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
R Y++ + + D+ + + P+ +
Sbjct: 113 -RRFLYKHM--PELEEYFHY-RYVDVSTLKELTRRWKPEVLD------------------ 150
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIRE 193
G +H A D+ ++A + R+
Sbjct: 151 --GFSKSGSHLALDDIRESIAELKYYRQ 176
>gi|91215241|ref|ZP_01252213.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
gi|91186846|gb|EAS73217.1| DNA Pol III Epsilon Chain [Psychroflexus torquis ATCC 700755]
Length = 256
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 45/219 (20%), Positives = 77/219 (35%), Gaps = 44/219 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+T +D ET G +++ DR + + ++V E + K +P P E
Sbjct: 5 LTRPICFFDLETTGINISKDRIVEISILKVFENNN----KESYTWKVNPG-IPIPKETTA 59
Query: 60 ITGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I GI+ D V E +F + +I+ + + GYN+ RFD R D
Sbjct: 60 IHGIS----DEDVVNEPKFDELAPKINA--MIKGCDLGGYNSNRFDIPLLAEEMLRTGID 113
Query: 117 SYRWSWDNGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+DL ++ + F + K DL +A
Sbjct: 114 ------------FDLKKINAVDVQTIFHKKEKRTLEAAYKFYCDK--DLT--------DA 151
Query: 175 HDAKADVYATLALVWLIREKKPKL-----FEYLYDYRNK 208
H A+AD AT ++ ++ P L + + K
Sbjct: 152 HSAEADTNATYEVLKSQLDRYPDLENDTKWLSTFSAHKK 190
>gi|312131463|ref|YP_003998803.1| exonuclease rnase t and DNA polymerase iii [Leadbetterella
byssophila DSM 17132]
gi|311908009|gb|ADQ18450.1| Exonuclease RNase T and DNA polymerase III [Leadbetterella
byssophila DSM 17132]
Length = 270
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 40/185 (21%), Positives = 63/185 (34%), Gaps = 38/185 (20%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQK 67
D ET G ++ DR + + + + E K +P P E I GI
Sbjct: 16 DLETTGVNITRDRIVEICIAKANLD----GTVETRTKKVNP-TIPIPLETSLIHGI---- 66
Query: 68 ALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYR---NFYDSYRWSW 122
D E F +++ + + + G+N+ RFD F R N +D
Sbjct: 67 YDEDVANEPTF-KQLARSLAQFLEGCDLAGFNSNRFDIPMLVEEFLRVDSNLFDIKNRK- 124
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
L+DV R + P + + + NAH A+AD
Sbjct: 125 --------LIDVQRIFHLMEPRTLSAAYKFYCQKTL-------------ENAHSAEADTL 163
Query: 183 ATLAL 187
ATL +
Sbjct: 164 ATLEV 168
>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 3_1_53]
gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 3_1_53]
Length = 1271
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ ++D ET G D +F G + DR + F KP +TG
Sbjct: 220 TYCVFDLETTGLSSRFDHIIEFGGQIVKDRA---CIKSLQMFIKPP--VALSAFTTELTG 274
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ +++ F+ I + I+ +N FD + + R
Sbjct: 275 IT-EEHMKNAKS---FADSIDEILDFIGDSILVAHNATFDYNFLNDELARIGRKPIM--- 327
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKAD 180
N D LD+ R++ A ++L +A + GI + AH A D
Sbjct: 328 ---NPVIDTLDLARSMQADRKG-------------YRLGQIARSYGIRYDEDVAHRADYD 371
Query: 181 VY 182
Sbjct: 372 AE 373
>gi|311110686|ref|ZP_07712083.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus gasseri MV-22]
gi|311065840|gb|EFQ46180.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus gasseri MV-22]
Length = 937
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKTYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNRDVAQARDFNY-YAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAIDTVELAQIAFPT----------FPSYKLRDLTARLKIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|296273413|ref|YP_003656044.1| exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
DSM 7299]
gi|296097587|gb|ADG93537.1| Exonuclease RNase T and DNA polymerase III [Arcobacter nitrofigilis
DSM 7299]
Length = 252
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 49/207 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVFIT 61
+V++D ET G + DR Q + VD + + + + D EA+ +
Sbjct: 2 PKYVLFDTETTG-NQEEDRIIQLGAMIVDAK-----APVEVYDELCFSDVEIKLEAMEVH 55
Query: 62 GITPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
ITP + G EA +F +++ ++ + N I +NI FD + +
Sbjct: 56 NITPDMII--GKPEATQTKFYQKLQEYNNPSNYLIA--HNINFDLGMIKKEGFE------ 105
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPD-----------GIQWPSRDDGATSFKLQDLALAN 167
S++ +LD +R P+ + ++ ++ A N
Sbjct: 106 --------SQYQILDTLRCAQHLFPELPYHRLQYLRYALDIYMDEE-------EEAAKHN 150
Query: 168 GIEHVNAHDAKADVYAT-LALVWLIRE 193
+ AHDA DV L L L+ +
Sbjct: 151 --ITIKAHDAIGDVLVMKLFLSQLVAK 175
>gi|56477410|ref|YP_158999.1| nuclease subunit Cho of the excinuclease complex (UvrC homolog
protein) [Aromatoleum aromaticum EbN1]
gi|56313453|emb|CAI08098.1| Nuclease subunit Cho of the excinuclease complex (UvrC homolog
protein) [Aromatoleum aromaticum EbN1]
Length = 469
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 36/195 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAV 58
+ + V+ D ET G + DR + A +R++R E + E +P A+
Sbjct: 3 LPDSLVLIDVETTGANPVSDRVTEIAVLRIERG-EIVGRWESLVNPERPIP-------AL 54
Query: 59 F--ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ GIT + + AE + + + +N RFD + RN F R
Sbjct: 55 IQRLVGIT-DEMVAGAPTFAELADSVRGHLD--GAVFVAHNA-RFDYGFIRNEFSRLGQQ 110
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ S +L ++ A P+ G L L +G H
Sbjct: 111 -FEAS---------VLCTVKLSRALYPE-----HHRHG-----LDALIERHGFTCGARHR 150
Query: 177 AKADVYATLALVWLI 191
A D L+
Sbjct: 151 AMGDTDVLWQFARLV 165
>gi|116629671|ref|YP_814843.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
gi|238854243|ref|ZP_04644587.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus gasseri 202-4]
gi|116095253|gb|ABJ60405.1| Rad3-related DNA helicase [Lactobacillus gasseri ATCC 33323]
gi|238833054|gb|EEQ25347.1| putative DnaQ family exonuclease/DinG family helicase
[Lactobacillus gasseri 202-4]
Length = 937
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKTYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNRDVAQARDFNY-YAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAIDTVELAQIAFPT----------FPSYKLRDLTARLKIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|229058278|ref|ZP_04196665.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH603]
gi|228720049|gb|EEL71635.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH603]
Length = 934
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 33/191 (17%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P +
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKRE-IP----L 53
Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
FIT +T + ++ + + + I + + +N + FD NF +
Sbjct: 54 FITELTGIDEDLVKQAPLFRDVAPMIVELLQ--GAAFVAHN-VHFD---------WNFLN 101
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D + P S+KL+DLA + +EH H
Sbjct: 102 EELRQAGYTEVHCPKIDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHR 151
Query: 177 AKADVYATLAL 187
A +D AT L
Sbjct: 152 ADSDALATAEL 162
>gi|229166488|ref|ZP_04294244.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH621]
gi|228617062|gb|EEK74131.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
AH621]
Length = 934
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 33/191 (17%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P +
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKRE-IP----L 53
Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
FIT +T + ++ + + + I + + +N + FD NF +
Sbjct: 54 FITELTGIDEDLVKQAPLFRDVAPMIVELLQ--GAAFVAHN-VHFD---------WNFLN 101
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D + P S+KL+DLA + +EH H
Sbjct: 102 EELRQAGYTEVHCPKIDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHR 151
Query: 177 AKADVYATLAL 187
A +D AT L
Sbjct: 152 ADSDALATAEL 162
>gi|189485715|ref|YP_001956656.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287674|dbj|BAG14195.1| DNA polymerase III epsilon subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 198
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 39/211 (18%), Positives = 63/211 (29%), Gaps = 39/211 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+ ++ V D ET G D A + + E + + LP P
Sbjct: 14 LPDNLVFLDIETTGLDPEKG-----ANIVEIAMLKVCGGIEERYESLVNPGLPIPSECSK 68
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I I + + FS ++ +N FD + Y
Sbjct: 69 IHAI--YDDMIKNSPSFDEIA--GNVFSFIGHSVVVCHNAPFDLLFVYRELYLAGVPV-- 122
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D L + R ++F S KL ++A A GIE H A A
Sbjct: 123 ----KNIRYIDTLKLARQYFSFD--------------SNKLGNIADAIGIEAELRHRAMA 164
Query: 180 DVYATLALVWLIREK---------KPKLFEY 201
DV ++ I +P +++Y
Sbjct: 165 DVLTMFSVAKYIFANMYRKDINMIEPSVYKY 195
>gi|325917447|ref|ZP_08179656.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria
ATCC 35937]
gi|325536321|gb|EGD08108.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas vesicatoria
ATCC 35937]
Length = 194
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 58/210 (27%), Gaps = 56/210 (26%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFI 60
+ + D E G D D + A + D Q + E+ + P A
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPEL--------AIAHPLATLE 59
Query: 61 -----TGITP------QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDD 103
Q+ L V A+ + F C N+I D
Sbjct: 60 AMDEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCG---NSICQD- 115
Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
R +R + N D+ + ++P
Sbjct: 116 ---RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP-------------------- 149
Query: 164 ALANGIEHVNAHDAKADVYATLALVWLIRE 193
+ANG +AH A +DV ++ + R+
Sbjct: 150 TVANGFAKSSAHTALSDVRDSIDELRHYRQ 179
>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
Length = 1433
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 28/200 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V++ E I+ E F + +TG
Sbjct: 416 ETYVVFDVETTGLSAVYDTVIELAAVKIKGG-EIIDRFESFA---NPHQPLSATIIELTG 471
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + + + +T + +N FD + F + +
Sbjct: 472 ITDDMLTD--APEVDEVFKKFEEWMGDHTLVA--HNASFDMGFINVGFKKAGIE----KT 523
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L + IE H A D
Sbjct: 524 KNP-----VIDTLELARFLFPE----------MKNHRLNTMCKKLDIELTQHHRAIYDTE 568
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT LV ++++ K FEY
Sbjct: 569 ATGYLLVKMLKDVIEKGFEY 588
>gi|228990657|ref|ZP_04150622.1| DnaQ family exonuclease/DinG family helicase [Bacillus
pseudomycoides DSM 12442]
gi|228769183|gb|EEM17781.1| DnaQ family exonuclease/DinG family helicase [Bacillus
pseudomycoides DSM 12442]
Length = 930
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 29/189 (15%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G DR Q A V V+ +I F P + +P P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDRITQIAAVVVEDG--EILEIFSSFVNPKRE-IP-PFIT 56
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI + ++ + + + + + + +N + FD + + + Y
Sbjct: 57 ELTGID-ENLVKQAPLFCDVAPMVAELLQ--GAYFVAHN-VHFDWNFLKEELKQAGYGEV 112
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ D +++ + I P+ D S+KL+DLA + +EH H A
Sbjct: 113 ------NCPKIDTVELAQ---------ILLPTAD----SYKLRDLAKKHELEHDQPHRAD 153
Query: 179 ADVYATLAL 187
+D T L
Sbjct: 154 SDALVTAEL 162
>gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 247
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 9/132 (6%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G DR +FAG+ + R+ E T + P D +P+ EA + GIT
Sbjct: 10 DTETTGLYSDRGDRILEFAGIEM-RKRRLTERTLHLYIHPDRD-IPE-EAAAVHGITLDT 66
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + F II +N RFD + F R + + G
Sbjct: 67 LAEKNAPKFAAVGQEIADFLRGAELII--HNARFDVGFLDMEFERMGLPTIE---ELGCE 121
Query: 128 RWDLLDVMRAIY 139
D L + R Y
Sbjct: 122 VTDTLAMAREKY 133
>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis SK119]
gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus hominis SK119]
Length = 1438
Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V + E I+ E F P + + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFE-RFSNPNEKL--SETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|301156619|emb|CBW16090.1| oligoribonuclease [Haemophilus parainfluenzae T3T1]
Length = 182
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGPVIAVHQSDELL 55
>gi|145641023|ref|ZP_01796604.1| oligoribonuclease [Haemophilus influenzae R3021]
gi|145274184|gb|EDK14049.1| oligoribonuclease [Haemophilus influenzae 22.4-21]
Length = 115
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|145631577|ref|ZP_01787343.1| oligoribonuclease [Haemophilus influenzae R3021]
gi|144982777|gb|EDJ90303.1| oligoribonuclease [Haemophilus influenzae R3021]
Length = 182
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V D L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDGLL 55
>gi|237749183|ref|ZP_04579663.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
gi|229380545|gb|EEO30636.1| oligoribonuclease [Oxalobacter formigenes OXCC13]
Length = 206
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D DR + A V D +
Sbjct: 32 NLIWVDLEMTGLDPETDRIIEVAVVVTDANLNVLAE 67
>gi|329914413|ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
gi|327545130|gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480]
Length = 201
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
+ V D E G D DR + A V D + VF
Sbjct: 27 NLVWLDMEMTGLDPETDRIIEVAVVVTDSNLNILGQGPVF 66
>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
Length = 1445
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 43/196 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-----VDRQWEKIESTEVFFCKPADDYLPDPEA- 57
+V++D ET G D + A V+ V+ +++ P +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMHKGNVEASFDEFIDPG------------HPLSN 471
Query: 58 --VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ +TGIT + +R E E R+ + FS ++ +N FD + N YR +
Sbjct: 472 TTINLTGIT-DEMVRGSKSEEE-VLRLFREFS-EGAVLVAHNA-SFDMGFL-NTSYRKYG 526
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+N ++D + P+ F L L+ G+ H
Sbjct: 527 IP---EAENP-----VIDTLELARYLYPE----------FKRFGLGVLSKKFGVSLEQHH 568
Query: 176 DAKADVYATLALVWLI 191
A D AT L W+
Sbjct: 569 RAIYDAEATGHLAWIF 584
>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
Length = 1433
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 53/228 (23%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVF 59
+ + FV++D ET G + DR + V+V R + ++ F +P V
Sbjct: 418 LDDDFVVFDIETTGLNPQQDRITEIGAVKV-RNGQIVDRFSAF---VNPGVSIPS-FIVK 472
Query: 60 ITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IFYRN 113
+TGIT +E EF I + ++ +N FD + ++ I
Sbjct: 473 LTGITNDMVKDAPPIEQVLNEFMEFIQ------GSVLVAHNA-NFDVGFIKHNAKIIGEK 525
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ Y LD + P+ G +KL +A IE N
Sbjct: 526 VKNPY-------------LDTLELCRKMFPEL--------GR--YKLNIVAKHLKIELEN 562
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
H A D AT K+F + + + + + DIQN
Sbjct: 563 HHRAVDDSMAT-----------AKIFIHCLNELKEKGCKNIKDIQNAF 599
>gi|91775906|ref|YP_545662.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
gi|91709893|gb|ABE49821.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
Length = 462
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 62/186 (33%), Gaps = 28/186 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +V+ D ET G DR + +R + +++ + P P I
Sbjct: 1 MLPAYVLLDLETTGATPVTDRITEIGLIRYENGI-EVKRWQTL-VNPEMHI--SPFITSI 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + F ++ S + ++ +N+RFD + +N F R D
Sbjct: 57 TGISNAMVKDAPL----FKDVANELLSHLHGAVLCAHNVRFDYGFLKNEFRR--LDITLR 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+L ++ P+ + G L + +GI H A D
Sbjct: 111 QN--------VLCTVKLSRRLYPE-----YKSHG-----LDAIIARHGIACAARHRAMGD 152
Query: 181 VYATLA 186
V
Sbjct: 153 VEVMAE 158
>gi|237654661|ref|YP_002890975.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
gi|237625908|gb|ACR02598.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
Length = 482
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 32/184 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAV 58
+ + D E+ G DR + A +RV E + E +P P
Sbjct: 3 LPSRLAFIDVESTGAHPVRDRITEIAILRV-EDGEVVARWESLVAPGQPIP-----PLIE 56
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI+ E + + + + + RFD + RN F R
Sbjct: 57 EVTGISDAMVAEAPAFEV-LADTVAALL--EGCVFVAH-SARFDYGFIRNAFTR-----I 107
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++ +L ++ A P+ G L L +G+ H A
Sbjct: 108 GREFEAP-----VLCTVKLSRALYPE-----HHRHG-----LDALIERHGLVCAARHRAM 152
Query: 179 ADVY 182
DV
Sbjct: 153 GDVE 156
>gi|241662497|ref|YP_002980857.1| oligoribonuclease [Ralstonia pickettii 12D]
gi|309781079|ref|ZP_07675817.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
gi|240864524|gb|ACS62185.1| Exonuclease RNase T and DNA polymerase III [Ralstonia pickettii
12D]
gi|308920145|gb|EFP65804.1| oligoribonuclease [Ralstonia sp. 5_7_47FAA]
Length = 215
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G DR + A V D + + V +D+ L
Sbjct: 24 NNLIWLDMEMTGLSPENDRIIEVAVVVTDSELNILAEGPVLVIHQSDELL 73
>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
Length = 1499
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 46/231 (19%), Positives = 78/231 (33%), Gaps = 47/231 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
+V++D ET G D+ + V+V+ + E F + +P P + +T I
Sbjct: 462 YVVFDLETTGFSPIKDKIIEIGAVKVENG-KITERFSTFV----NPKIPIPFRITQLTSI 516
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-YRNFYDSYRWSW 122
T Q + + + QF ++ +N FD + Y++ ++
Sbjct: 517 TDQMVMDA----PDIDTVLPQFLEFIGDAVLVAHNASFDVGFIEQNCRYQDIVPNFTS-- 570
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D + P + FKL +A A I N H A D
Sbjct: 571 ---------VDTVAMARILLPTLSK----------FKLNVVANALHISLENHHRAVDDAG 611
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKL-------IDIQNMTPLVHV 226
AT + ++ F + RN N L +L D P HV
Sbjct: 612 ATAEI--FVK------FVEMLKERNINDLARLNQFGSNNADAIKKLPTYHV 654
>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
Length = 1450
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS +T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-DTILVAHNA-AFDMGFLNTSYARYGIPEAA- 531
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 532 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
Length = 1450
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS +T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-DTILVAHNA-AFDMGFLNTSYARYGIPEAA- 531
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 532 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|284006621|emb|CBA71882.1| oligoribonuclease [Arsenophonus nasoniae]
Length = 173
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D DR + A + D +
Sbjct: 19 NNLIWIDLEMTGLDPQQDRIIEIATIVTDSNLTILSE 55
>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
Length = 1450
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS +T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-DTILVAHNA-AFDMGFLNTSYARYGIPEAA- 531
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 532 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
Length = 1450
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS +T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-DTILVAHNA-AFDMGFLNTSYARYGIPEAA- 531
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 532 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E1071]
gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E1679]
gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium U0317]
gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E1071]
gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E1679]
gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium U0317]
Length = 1450
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 476
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + +R E E R FS +T ++ +N FD + + R
Sbjct: 477 TGIT-DEMVRGSKSEEEVLRMFL-EFSK-DTILVAHNA-AFDMGFLNTSYARYGIPEAA- 531
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 532 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 573
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 574 AEATGHLAWIF 584
>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 208-1]
gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 208-1]
Length = 1439
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + +T IT
Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + EAE +R +F+ C +N++FD + R+
Sbjct: 478 -DEMVSKADDEAEVIKRFQEFYGDRPLCG---HNVQFDVGFVNAALRRSGLKEI------ 527
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L L + + H A D AT
Sbjct: 528 ---TQPVVDTLEVSRLLHPEQT--------KHT--LDSLCKKYNVVLEHHHRANQDAEAT 574
>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii SJ-7A-US]
gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii SJ-7A-US]
Length = 1439
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + +T IT
Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + EAE +R +F+ C +N++FD + R+
Sbjct: 478 -DEMVSKADDEAEVIKRFQEFYGDRPLCG---HNVQFDVGFVNAALRRSGLKEI------ 527
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L L + + H A D AT
Sbjct: 528 ---TQPVVDTLEVSRLLHPEQT--------KHT--LDSLCKKYNVVLEHHHRANQDAEAT 574
>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 1153]
gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 1153]
Length = 1428
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + +T IT
Sbjct: 411 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 466
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + EAE +R +F+ C +N++FD + R+
Sbjct: 467 -DEMVSKADDEAEVIKRFQEFYGDRPLCG---HNVQFDVGFVNAALRRSGLKEI------ 516
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L L + + H A D AT
Sbjct: 517 ---TQPVVDTLEVSRLLHPEQT--------KHT--LDSLCKKYNVVLEHHHRANQDAEAT 563
>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 269-3]
gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 269-3]
Length = 1405
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + +T IT
Sbjct: 388 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 443
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + EAE +R +F+ C +N++FD + R+
Sbjct: 444 -DEMVSKADDEAEVIKRFQEFYGDRPLCG---HNVQFDVGFVNAALRRSGLKEI------ 493
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L L + + H A D AT
Sbjct: 494 ---TQPVVDTLEVSRLLHPEQT--------KHT--LDSLCKKYNVVLEHHHRANQDAEAT 540
>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 27-2-CHN]
gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 115-3-CHN]
gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 208-1]
gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 27-2-CHN]
gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 115-3-CHN]
gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus jensenii 208-1]
gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
Length = 1439
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + +T IT
Sbjct: 422 FVIFDVETTGLSSVYDTIIEIGAVKM-KDGEVIERFDEF---INPHHPLSETTINLTSIT 477
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + EAE +R +F+ C +N++FD + R+
Sbjct: 478 -DEMVSKADDEAEVIKRFQEFYGDRPLCG---HNVQFDVGFVNAALRRSGLKEI------ 527
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L L + + H A D AT
Sbjct: 528 ---TQPVVDTLEVSRLLHPEQT--------KHT--LDSLCKKYNVVLEHHHRANQDAEAT 574
>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
Length = 1500
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T+ + +D ET G + D+ + V++ R E ++ D L DPE
Sbjct: 445 LTDEIICFDLETTGTNAKEDKIIEIGAVKL-RNLEIVDKF---------DMLVDPEVPLT 494
Query: 61 ------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
T IT + I F + C++ +N FD + RN R
Sbjct: 495 EFISNLTNITDDMLKGQADIRTAIDAFI--AFCGDSPCLVAHNA-PFDTGFIRNTCERLG 551
Query: 115 YD 116
D
Sbjct: 552 ID 553
>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
Length = 1536
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 72/200 (36%), Gaps = 34/200 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+ +++V++D ET G + + VRV+ F + + +P P +
Sbjct: 498 LDDNYVVFDIETTGLSNLTCKIIEIGAVRVEH-----GEVVSRFSEFINPEVPIPFKITE 552
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T IT V+E + + F ++ +N FD + + R D
Sbjct: 553 LTSITDAMVEDAPVIEEILPK--FREFC--GDAVLVAHNADFDTGFIKMECERQKLD--- 605
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W + +D + P G + FKL +A A G+ + H A
Sbjct: 606 WEFT-------YVDTVAMAQMLLP----------GLSRFKLDTVAKAVGVPLEHHHRAVD 648
Query: 180 DVYAT----LALVWLIREKK 195
D T + V +++E+
Sbjct: 649 DAECTAWIFVKFVEMLKERN 668
>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
HKU09-01]
gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
HKU09-01]
gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
Length = 1438
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-YDGEIIDKFERFS---NPHQKLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T E + F + + +N FD + + R +
Sbjct: 477 TDDMLTD--APE---IDEVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERIGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|218510298|ref|ZP_03508176.1| DNA polymerase III subunit epsilon [Rhizobium etli Brasil 5]
Length = 72
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D +DR + G+ + + +T + P D + P+A+ + GIT
Sbjct: 4 IIFDTETTGLDNRMDRIIEIGGIELFNHF-PTGNTLHIYINPGDQKV-HPDALAVHGITD 61
Query: 66 QKALRD 71
+
Sbjct: 62 EFLKDK 67
>gi|91228387|ref|ZP_01262313.1| oligoribonuclease [Vibrio alginolyticus 12G01]
gi|91188028|gb|EAS74334.1| oligoribonuclease [Vibrio alginolyticus 12G01]
Length = 181
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 48/204 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D + + E K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELVKMDDWCTNT 65
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRN 108
A +G+ ++ + E + + +F C N+I D R
Sbjct: 66 HTA---SGL-VERVRNSQISEQDAVAQTIEFLEKWVPKGASPICG---NSIGQD----RR 114
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
Y++ + + D+ + + P+ + NG
Sbjct: 115 FLYKHM--PELEEFFHY-RYVDVSTLKELARRWQPEVL--------------------NG 151
Query: 169 IEHVNAHDAKADVYATLALVWLIR 192
H A D+ ++A + R
Sbjct: 152 FTKQGTHLALDDIRESIAELKYYR 175
>gi|326406526|gb|ADZ63597.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
lactis CV56]
Length = 277
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 42/201 (20%), Positives = 65/201 (32%), Gaps = 41/201 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ +V++D+ET G + Q V+ D ++ K Y+ E +
Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQL-VKNQRSYV-STEITQL 58
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGI P L +E EF I V + N FD + Y+ D
Sbjct: 59 TGIKPADLLNQPTIEEILPEFLDFIKGHLLVAH-------NAPFDISF----LYQAIIDC 107
Query: 118 YRWSWDNGNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ +D L + + YA FK DL N +
Sbjct: 108 AITDVEAFRV-YDTLAESKKLLTMSSYALEN--------------FK--DLLEMNDLRS- 149
Query: 173 NAHDAKADVYATLALVWLIRE 193
HDA D T L +++
Sbjct: 150 --HDALNDCLITAKLYQYLQK 168
>gi|251792379|ref|YP_003007105.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
gi|247533772|gb|ACS97018.1| oligoribonuclease [Aggregatibacter aphrophilus NJ8700]
Length = 181
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELL 55
>gi|325963971|ref|YP_004241877.1| DNA polymerase III subunit epsilon [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470058|gb|ADX73743.1| DNA polymerase III, epsilon subunit [Arthrobacter
phenanthrenivorans Sphe3]
Length = 236
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 46/212 (21%), Positives = 71/212 (33%), Gaps = 60/212 (28%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFIT 61
+D ET GR+ R + VD Q E + E +L DP EA +
Sbjct: 12 FDLETTGRNSRAARIVTASVTVVDHQAEVMREHE---------WLADPGVEIPTEASDVH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT ++A R+G E +R + + +
Sbjct: 63 GITTEQARREGRPAHEVTREVAAAL---------------------QELFDSNIPVIA-- 99
Query: 122 WDNGNSRWDLLDVMRAIYAFS---PDGIQWPSRD------------DGATSFKLQDLALA 166
N+ +D + A + P ++P D G + L L
Sbjct: 100 ---FNASYDF--TVLAAESARYGIPQLTRFPVLDPYIMNKQVDRYRKGKRT--LTALCEE 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKKPKL 198
G+ NAH + AD ATL ++ + K PKL
Sbjct: 153 YGVVLDNAHTSAADALATLRVLDAMAGKFPKL 184
>gi|304414192|ref|ZP_07395560.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
insecticola LSR1]
gi|304283406|gb|EFL91802.1| oligoribonuclease (3'->5' exoribonuclease) [Candidatus Regiella
insecticola LSR1]
Length = 181
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 52/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--------- 53
N+ + D E G DR + A + D +E V +D+ L
Sbjct: 6 NNLIWIDLEMTGLYPEHDRIIEIATLVTDANLNLLEEGPVIAIHQSDETLSLMDEWNTRT 65
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSR 107
++ + I EA ++ +F C N++ D R
Sbjct: 66 HNDSGLVNRI-----KNSTTDEAAAEKQTIEFLKKYVPQGVSPICG---NSVGQD----R 113
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+R + + D+ + + P+ ++
Sbjct: 114 RFLFR-YMPELEKYFHY--RYLDVSTLKELARRWKPEILK-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIREKK 195
G N H A D+ ++ L+ ++
Sbjct: 151 GFTKNNTHKAMDDIRESV--AELVYYRQ 176
>gi|119474830|ref|ZP_01615183.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
gi|119451033|gb|EAW32266.1| oligoribonuclease [marine gamma proteobacterium HTCC2143]
Length = 195
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 42/201 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFIT 61
+ + D E G + A D + A + D I V + + L D
Sbjct: 15 NLIWIDLEMTGLEPATDHIIEIATIVTDSDLNTIAEGPVLAIHQSQEILSGMDEWNTTHH 74
Query: 62 GIT------PQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
G + Q + D E EF R+ + T I N+I D F
Sbjct: 75 GSSGLTDRVKQSLIVDRDAEQLTLEFLRQ----YVPEGTSPICGNSIGQD-----RRFLV 125
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + N D+ + + + PD I G
Sbjct: 126 KYMPELEAYFHYRN--LDVSTLKELMRRWRPDLIS--------------------GFNKK 163
Query: 173 NAHDAKADVYATLALVWLIRE 193
AH A D+ ++ + R+
Sbjct: 164 GAHLALDDIRESIEELKYYRD 184
>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type
[Lactobacillus plantarum WCFS1]
gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 1437
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 27/182 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +VI+D ET G DR + + V++ + ++ E F + +T
Sbjct: 420 STYVIFDTETTGLSAIYDRVIELSAVKMVKG-NVVDQFEEF---IDPGFHLSETTTNLTS 475
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT +R E E + +F+ ++G+N + FD + + R+
Sbjct: 476 IT-DDMVRGSKSEEEVFKLFREFYGD--AIVVGHN-VTFDIGFMNTGYARHHMGPI---- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ ++L LA + + H A D
Sbjct: 528 TNP-----IIDTLTLARWLYPNL----------RGYRLNTLAKKFNVNLEHHHRAIYDAE 572
Query: 183 AT 184
T
Sbjct: 573 TT 574
>gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
Length = 1428
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 54/276 (19%), Positives = 88/276 (31%), Gaps = 72/276 (26%)
Query: 5 FVIYDYETFGRDVA-----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
++I+D ET G R Q A D + I + +P +P
Sbjct: 2 YLIFDTETTGL-PRDYNAPMSDVDNWPRLVQLAWQLHDEKGNLISNHNYII-RPEGFTIP 59
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIF 110
A + GI+ ++AL++G ++I F ++G+N + FD + +
Sbjct: 60 Y-NAEKVHGISTKRALKEGHD----LKQILGIFEGDVKKTKYLVGHN-VEFDINVVGSEY 113
Query: 111 YRNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN-G 168
R + D+ AI +WP+ L +L G
Sbjct: 114 LRAEATMPLTADQLD---TKDISTEFCAIPGGRGGKFKWPT---------LTELHQKLFG 161
Query: 169 IEHVNAHDAKADVYAT------------------LALVWLIREKKPKLFEY--------- 201
+AHDA DV AT +A+ +I E PKL E
Sbjct: 162 KGFGDAHDAAYDVDATARCFFGLITQGVQAPEEGIAISEVIYEA-PKLDEANFAQAKDTQ 220
Query: 202 ------LYDYRNKNQLRKLIDIQNMTPLVHVSGMFG 231
+ K + L DI +HV +
Sbjct: 221 KAAAKDVLKQAGKADISDLTDIP--FTHLHVHSQYS 254
>gi|84394531|ref|ZP_00993240.1| exodeoxyribonuclease I [Vibrio splendidus 12B01]
gi|84374856|gb|EAP91794.1| exodeoxyribonuclease I [Vibrio splendidus 12B01]
Length = 30
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 440 LQSLSGEYKGDEGKEGLINALYEYLQWVI 468
L++L+ E++ DE K ++ A+Y+Y++ +
Sbjct: 1 LENLAHEHESDEKKMAILKAVYQYVEKLA 29
>gi|262194125|ref|YP_003265334.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077472|gb|ACY13441.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 62/190 (32%), Gaps = 25/190 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
V D ET G D + A +RV + + E V +P +D DPEA+ + G
Sbjct: 4 LVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDA--DPEALEVNG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
++A D V + + + G+N + FD + W +
Sbjct: 62 YR-RRAWADAVSLGDAMAELAPML--EGAVLAGHN-VAFDRRFL----------EAAWDY 107
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
+A + +P G S L + G+ H A DV
Sbjct: 108 VGHR------PENLDHHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161
Query: 182 YATLALVWLI 191
A L + +
Sbjct: 162 RACLGVARRL 171
>gi|255070749|ref|XP_002507456.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
gi|226522731|gb|ACO68714.1| exonuclease and DNA helicase [Micromonas sp. RCC299]
Length = 1473
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 62/187 (33%), Gaps = 28/187 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V++D ET G + +R + A V V P +P P V +TGIT
Sbjct: 296 VVFDLETTGLNKDRNRIIEIAAVNVSD---PTHQPMSTLVNPGRFAVPPPV-VALTGITN 351
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIG--------YNNIRFDDYYSRNIFYRNFYDS 117
V + + + Q + G +N +FD + + YR
Sbjct: 352 AMVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAE-YRRLGRE 410
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAH 175
W D L + R A S+KL+ LA G+ +AH
Sbjct: 411 LPEDW----RFVDTLPLARKTLA---------KEAVPGGSYKLESLAAHFGVDTAGASAH 457
Query: 176 DAKADVY 182
A+AD
Sbjct: 458 RAEADAR 464
>gi|295133095|ref|YP_003583771.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
gi|294981110|gb|ADF51575.1| DNA polymerase III subunit epsilon [Zunongwangia profunda SM-A87]
Length = 257
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 41/196 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +D ET G ++A DR + A ++V + + + P + +P E + I
Sbjct: 5 LTKPICFFDLETTGTNLAKDRIVEIAILKVYPNGN--KESRTWLVNPEME-IPK-EVIAI 60
Query: 61 TGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
GI+ E F S++I+ + + GYN+ RFD R D
Sbjct: 61 HGIS----NEKVANEPTFKELSKQIYD--MIKGCDLGGYNSNRFDIPLLAEELLRADID- 113
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA----NGIEHVN 173
+D+ ++M D + + T LA A G E ++
Sbjct: 114 -----------FDMKNMMAV------DVQTIFHKKEQRT------LAAAFKFYCGKELID 150
Query: 174 AHDAKADVYATLALVW 189
AH A AD AT ++
Sbjct: 151 AHSAAADTEATYEVLK 166
>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum Ba4 str. 657]
gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum Ba4 str. 657]
Length = 1432
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 42/189 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFVNPKRIIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFY 115
T IT E +I F IG + N FD +
Sbjct: 470 TSITDDMVQDK-----ETIDKILPRFID----FIGDSVVVAHNADFDVSFINKNC----- 515
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ ++N ++D + P+ +KL +A GI N H
Sbjct: 516 KDLKIEFENS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHH 560
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 561 RAVDDAKAT 569
>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum Bf]
gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum Bf]
Length = 1432
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 42/189 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFVNPKRIIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFY 115
T IT E +I F IG + N FD +
Sbjct: 470 TSITDDMVQDK-----ETIDKILPRFID----FIGDSVVVAHNADFDVSFINKNC----- 515
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ ++N ++D + P+ +KL +A GI N H
Sbjct: 516 KDLKIEFENS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHH 560
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 561 RAVDDAKAT 569
>gi|262393026|ref|YP_003284880.1| oligoribonuclease [Vibrio sp. Ex25]
gi|262336620|gb|ACY50415.1| oligoribonuclease [Vibrio sp. Ex25]
Length = 181
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 48/204 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D + + E K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAIHQPEEELAKMDDWCTNT 65
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRN 108
A +G+ ++ + E + + +F C N+I D R
Sbjct: 66 HTA---SGL-VERVRNSKISEQDAVAQTIEFLEKWVPKGASPICG---NSIGQD----RR 114
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
Y++ + + D+ + + P+ + NG
Sbjct: 115 FLYKHM--PELEEFFHY-RYVDVSTLKELARRWQPEVL--------------------NG 151
Query: 169 IEHVNAHDAKADVYATLALVWLIR 192
H A D+ ++A + R
Sbjct: 152 FTKQGTHLALDDIRESIAELKYYR 175
>gi|78484978|ref|YP_390903.1| oligoribonuclease [Thiomicrospira crunogena XCL-2]
gi|123555812|sp|Q31HZ4|ORN_THICR RecName: Full=Oligoribonuclease
gi|78363264|gb|ABB41229.1| Exonuclease [Thiomicrospira crunogena XCL-2]
Length = 184
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G D D+ + A V D + + V + YL
Sbjct: 5 NNLIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAEGPVMAIQTEQHYL 54
>gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
Length = 926
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 32/191 (16%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAV 58
+ + I D ET G A DR Q A + + + WE ++ F KP ++ D
Sbjct: 4 SQKYAIVDIETTGHSPASGDRMIQIA-IVIMQGWEIVKKYSTFINPGKPIPLFIQD---- 58
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+T IT + ++D + ++ I++ + +N FD + + F R
Sbjct: 59 -LTNIT-DEDVKDALPFEAYADYIYELL--EGAVFVAHNT-DFDLNFLQAEFNRAGLS-- 111
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+W +D + P + S+KL DLA I +AH A
Sbjct: 112 KWHGKK-------IDTVELTKILFPMSL----------SYKLSDLANDFNILLQSAHRAD 154
Query: 179 ADVYATLALVW 189
D AT L+
Sbjct: 155 DDALATAYLLK 165
>gi|260434020|ref|ZP_05787991.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417848|gb|EEX11107.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
ITI-1157]
Length = 470
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 70/211 (33%), Gaps = 32/211 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV++D ET G D Q VRV + +I E F P + + ++
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVVKG--RIVEGEQFDTLVNPGIPIPPASTRVHKVS 335
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++D R+ H F+ + +N FD + R R WD+
Sbjct: 336 -DRMVQDAPDIITAGRQFH-HFARDAVIVA--HNAPFDMAFLRRHAKR-----MEVEWDH 386
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE------HVNAHDAK 178
+LD + + L L GIE H DA
Sbjct: 387 P-----ILDTVLLSAVLFGAS----------ETHTLDALCDRLGIEIPETLRHTALGDAV 431
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
A A + ++ +++ + K F + K+
Sbjct: 432 ATAEALVRMLPMLQARGMKTFGDVIAETRKH 462
>gi|169334141|ref|ZP_02861334.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
17244]
gi|169258858|gb|EDS72824.1| hypothetical protein ANASTE_00535 [Anaerofustis stercorihominis DSM
17244]
Length = 204
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 34/177 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + + + V+V R + ++ F P D + PE +TGI +A
Sbjct: 28 DIETTGLNPDENEIIEVGAVKV-RDRKIVDEFSSFVS-PKKDII-SPEIRKLTGI--DEA 82
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGY----NNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +G + +I N I G +N+ FD + YD+Y + +
Sbjct: 83 MIEG------ADQIEDVIPRFNEFIDGEILLGHNVNFDINFL--------YDNYER-YSD 127
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
D +D+++ SP+ + KL+ + GI+ H A +D
Sbjct: 128 FYLSNDYVDLLKISRKLSPE----------FENHKLETVLKKLGIKVDQQHRAVSDC 174
>gi|15600144|ref|NP_253638.1| oligoribonuclease [Pseudomonas aeruginosa PAO1]
gi|107104050|ref|ZP_01367968.1| hypothetical protein PaerPA_01005123 [Pseudomonas aeruginosa PACS2]
gi|116053100|ref|YP_793419.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894046|ref|YP_002442915.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
gi|254238334|ref|ZP_04931657.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
gi|254244161|ref|ZP_04937483.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
gi|296391791|ref|ZP_06881266.1| oligoribonuclease [Pseudomonas aeruginosa PAb1]
gi|313109953|ref|ZP_07795880.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
gi|11386963|sp|P57665|ORN_PSEAE RecName: Full=Oligoribonuclease
gi|122256887|sp|Q02F67|ORN_PSEAB RecName: Full=Oligoribonuclease
gi|9951232|gb|AAG08336.1|AE004908_2 oligoribonuclease [Pseudomonas aeruginosa PAO1]
gi|115588321|gb|ABJ14336.1| oligoribonuclease [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170265|gb|EAZ55776.1| oligoribonuclease [Pseudomonas aeruginosa C3719]
gi|126197539|gb|EAZ61602.1| oligoribonuclease [Pseudomonas aeruginosa 2192]
gi|218774274|emb|CAW30091.1| oligoribonuclease [Pseudomonas aeruginosa LESB58]
gi|310882382|gb|EFQ40976.1| oligoribonuclease [Pseudomonas aeruginosa 39016]
Length = 180
Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 37/131 (28%), Gaps = 33/131 (25%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
+ + D E G D D + A + D + V + PE +
Sbjct: 4 PQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVI-------AIHQPEEILAG 56
Query: 61 -----------TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDD 103
+G+T Q+ V AE + F C N+I D
Sbjct: 57 MDEWNTRQHGQSGLT-QRVRESTVSMAEAEAQTLAFLEQWVPKRSSPICG---NSICQD- 111
Query: 104 YYSRNIFYRNF 114
R YR+
Sbjct: 112 ---RRFLYRHM 119
>gi|329667338|gb|AEB93286.1| ATP dependent helicase [Lactobacillus johnsonii DPC 6026]
Length = 938
Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKTYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNEDVAQAHDFSY-YAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAVDTVELAQIAFPT----------FPSYKLRDLTARLRIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
Length = 1375
Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 28/196 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + + A V++ R E I+ E F + + +TG
Sbjct: 423 DTYVVFDVETTGLSAMYNTIIELAAVKI-RDGEIIDRFESFA---NPHHPLSATTINLTG 478
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + +G E + + F ++ +N FD + + + D
Sbjct: 479 ITDD--MVEGAPEV--AEALKAFKDWAGDAVLVAHNASFDMGFLNVGYGKAGLDKA---- 530
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+N ++D + P+ + +L LA +E H A D
Sbjct: 531 ENP-----VIDTLELARLLYPE----------MKNHRLNTLAKKFDVELTQHHRAIYDAE 575
Query: 183 AT-LALVWLIREKKPK 197
AT L+ ++++ K
Sbjct: 576 ATGYLLLKMLKDANEK 591
>gi|42519127|ref|NP_965057.1| hypothetical protein LJ1202 [Lactobacillus johnsonii NCC 533]
gi|41583414|gb|AAS09023.1| hypothetical protein LJ_1202 [Lactobacillus johnsonii NCC 533]
Length = 938
Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 40/187 (21%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPD---PEAV 58
F + D ET G D QF I+ +V + + P P+AV
Sbjct: 10 FAVVDLETTGTQRNQGDHIIQFGCA-------IIKKRKVVKTYSFLIN---PHREIPQAV 59
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+T I+ + + ++ +I + NT + +N + FD + +
Sbjct: 60 ENLTHISNEDVAQAHDFSY-YAPKIRKIL--ENTIFVAHN-VNFDLPFLNYELVNAGLEP 115
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D + P S+KL+DL I+H+N H A
Sbjct: 116 L---------TGKAVDTVELAQIAFPT----------FPSYKLRDLTARLRIKHLNPHRA 156
Query: 178 KADVYAT 184
+D T
Sbjct: 157 DSDALVT 163
>gi|330505332|ref|YP_004382201.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
gi|328919618|gb|AEB60449.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina NK-01]
Length = 233
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 60/193 (31%), Gaps = 37/193 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFITGITP 65
D ET G ++ D+ V +D I+ E F C PD +A I GI P
Sbjct: 45 DLETTGLNMRRDQVLAIGAVVIDHG--AIDFAEQFECTLHQ---PDHQASASTLIHGIAP 99
Query: 66 QKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ GV AE F F + + F + + + R S +
Sbjct: 100 SEV-ARGVDPAEGLLDFM-----EFVGSSPL------LAFHAGFDQRMLARALRQSLGYR 147
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ DV P G L D G++ H+A AD
Sbjct: 148 LQHS-----FFDVAEIAPLLCPQA----RIRQGG----LDDWVAEFGLQVHQRHNASADA 194
Query: 182 YATLALVWLIREK 194
T L ++ K
Sbjct: 195 LVTAELALMLFSK 207
>gi|258648468|ref|ZP_05735937.1| exonuclease [Prevotella tannerae ATCC 51259]
gi|260851225|gb|EEX71094.1| exonuclease [Prevotella tannerae ATCC 51259]
Length = 256
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 37/194 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T + +D E G +A DR + + ++V E + + EA +
Sbjct: 6 LTRPIIFFDIEATGLQIARDRIVELSYIKVFPD----GREESKTLRFNPEMHISAEATAV 61
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GI + F + + ++ +C + G+N+ FD F R D
Sbjct: 62 NGIKDEDVADC----PTFKEKSGELTAIFQSCDLAGFNSNVFDVPMLVEEFARAGSDFDI 117
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSP----DGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
L+DV + P ++ D NAH
Sbjct: 118 TKSK-------LVDVQTIYHKLEPRNLIAAYKFYCNKD-----------------LHNAH 153
Query: 176 DAKADVYATLALVW 189
A AD AT ++
Sbjct: 154 TAMADTQATYEVLK 167
>gi|302345413|ref|YP_003813766.1| exonuclease [Prevotella melaninogenica ATCC 25845]
gi|302149990|gb|ADK96252.1| exonuclease [Prevotella melaninogenica ATCC 25845]
Length = 284
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 11/118 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+T +++D ET G D+ DR Q + ++V ++ E F P P P E
Sbjct: 5 LTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKE--ERENIFINPEK---PIPAEVTL 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ F ++ C GYN+ RFD F R D
Sbjct: 60 LTGISDADVADA----PTFKQKAKDLSDKFAGCDFAGYNSNRFDVPMLAEEFLRAGVD 113
>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
Length = 1436
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 32/195 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YATLAL-VWLIREKK 195
AT + + ++++ +
Sbjct: 570 EATAYIFIKMVQQMQ 584
>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21193]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
Length = 1436
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus MRSA131]
Length = 1436
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus ED133]
Length = 1436
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
Length = 1436
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus ST398]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus D139]
gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
H19]
gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus D139]
gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
H19]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C427]
gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C427]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
TW20]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
Length = 1436
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9635]
gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9635]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
TCH130]
gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
TCH130]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus MRSA177]
Length = 1442
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 425 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 481 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 531 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 575
Query: 182 YAT 184
AT
Sbjct: 576 EAT 578
>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
14600]
gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
14600]
Length = 1532
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 67/221 (30%), Gaps = 47/221 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + FV++D ET G DR + VR++ + F P I
Sbjct: 496 LDDSFVVFDIETTGFSAEKDRIIEIGAVRMEGG-RITDRFSSF---VNPGR---PIPFRI 548
Query: 61 TGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T +T D V+ + + F + I+ +N FD + R R ++
Sbjct: 549 TELT--SIRDDMVIGSAGIEEVLPDFLAFSQGAIMVAHNADFDMGFIRQNCLRLHLEAPA 606
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANGIEHVNAHD 176
D V Y S KL LA A I+ + H
Sbjct: 607 T-------YMD--TVAMGRYLM--------------PSLHNQKLNTLAKALKIDPGHHHR 643
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
A D AT + FE + +L DI
Sbjct: 644 AVDDAEATAHI-----------FEKFIQMFRDRGMNELSDI 673
>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
68-397]
gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
E1410]
gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M876]
gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M899]
gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C101]
gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M809]
gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M1015]
gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
68-397]
gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
E1410]
gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M876]
gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C101]
gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M899]
gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WBG10049]
gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
aureus subsp. aureus M1015]
gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus M809]
gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C160]
gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus A017934/97]
gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus C160]
gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus A017934/97]
gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
Length = 1415
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
MSSA476]
gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
Newman]
gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5948]
gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
D30]
gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
930918-3]
gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9765]
gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus MW2]
gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
MSSA476]
gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus str. Newman]
gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5948]
gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
930918-3]
gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
D30]
gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A9765]
gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21189]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
Length = 1435
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus COL]
gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
Length = 1436
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 474
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 475 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 524
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 525 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 569
Query: 182 YAT 184
AT
Sbjct: 570 EAT 572
>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
A9719]
gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A9299]
gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A8115]
gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6300]
gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6224]
gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5937]
gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A8117]
gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A10102]
gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
subsp. aureus N315]
gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus Mu50]
gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
aureus subsp. aureus JH9]
gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
aureus JH1]
gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
subsp. aureus Mu3]
gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
A9719]
gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A9299]
gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A8115]
gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6300]
gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A6224]
gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
A5937]
gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A10102]
gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus A8117]
gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus aureus subsp. aureus 21172]
Length = 1438
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
Length = 1421
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 74/425 (17%), Positives = 142/425 (33%), Gaps = 100/425 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAV-FI 60
FV++D ET G A ++ + V+ VD Q ++ + + +P PE + +
Sbjct: 400 EEFVVFDIETTGLSNATEKITEIGAVKIVDNQ--IVDEFN----QLINPEIPIPEKITEL 453
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T IT + +E EF + + C + +N FD + + +
Sbjct: 454 TSITNEMVKDMPKIEEVLPEFLKFV-------GDCTLIAHNADFDMGFIKKNCLDLRINP 506
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
R +D + A P + KL L + N H A
Sbjct: 507 IRT----------YIDTLAFARALEPHL----------KNHKLDTLTKKYNVNLFNHHRA 546
Query: 178 KADVYAT----LALVWLIREKKPKL--------FEYLYDYRNKNQ----LRKLIDIQNMT 221
D AT + +V + ++ K ++ R + + LI ++N+
Sbjct: 547 CDDARATGEVFICMVKDLEKRGVKFDININKIDSDWSISKRESHTATIYAQNLIGLKNLY 606
Query: 222 PLVHVSG-MFGASRSNTALIAPVAWHPRYKDSVIGCNLSGD---MRVFQDLDSVQLAKRL 277
LV S + P + + ++ ++ + + D ++ +S + +
Sbjct: 607 KLVTASNLKYFYREGGI----PKSELNKRREGLVIGSGNEDGELIKAILGFESDEKLDEI 662
Query: 278 FTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNL 337
+ +D L+ P+ Y +R + K C L R+ +L
Sbjct: 663 ISRYDFLEVQPPL-----------------YYDGVKSKRMSFNLKSCE---ELTRKLYDL 702
Query: 338 RDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLP 397
+ +NKP + S Y +F D + IL P ++ + P
Sbjct: 703 SKK----HNKPLVADS-------YAKYFEKTDYIFRNIILEGQPRKIYG-------EKFP 744
Query: 398 ELFFR 402
LFFR
Sbjct: 745 TLFFR 749
>gi|242014597|ref|XP_002427973.1| oligoribonuclease, putative [Pediculus humanus corporis]
gi|212512472|gb|EEB15235.1| oligoribonuclease, putative [Pediculus humanus corporis]
Length = 196
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 4/124 (3%)
Query: 1 MT-NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV 58
MT + ++ D E G + D + A + + + F D+ L E
Sbjct: 18 MTLDRYIWIDLEMTGLNPETDTILEVACIITEPDLNPLNEGMHFVIHQNDNVLKSMNEWC 77
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ + F+ NT I G N + + Y +F + +
Sbjct: 78 LVHHEKSGLISESRASPHSLKDVEEKLFNYIKSNTFIDGTNYLAGNSVYMDLLFLKKYMP 137
Query: 117 SYRW 120
S
Sbjct: 138 SIPT 141
>gi|15835437|ref|NP_297196.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270285617|ref|ZP_06195011.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Nigg]
gi|270289627|ref|ZP_06195929.1| DNA polymerase III subunit epsilon [Chlamydia muridarum Weiss]
gi|301337013|ref|ZP_07225215.1| DNA polymerase III subunit epsilon [Chlamydia muridarum MopnTet14]
gi|8163328|gb|AAF73606.1| DNA polymerase III, epsilon subunit, putative [Chlamydia muridarum
Nigg]
Length = 250
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV D ET G DV DR +FA +R E I+S E + E+ I I+
Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIRFTFD-EVIDSVEFL---IHPERAVSAESQKIHKIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
L+D +E I FF I+G+ ++ FD R
Sbjct: 65 -DAMLKDKPKFSEVFSTIKGFF-KERDYIVGH-HVGFDLQVLSQESERLGETLLPKQ--- 118
Query: 125 GNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ ++D +R Y SP+ L+ LA + H H A DV
Sbjct: 119 ---HY-VIDTLRLAKEYGDSPNN-------------SLEALARHFNVPHQGNHRAMKDVE 161
Query: 183 ATLALVWLIREK 194
+ + + ++
Sbjct: 162 MNVKVFKHLTKR 173
>gi|26991580|ref|NP_747005.1| oligoribonuclease [Pseudomonas putida KT2440]
gi|148549980|ref|YP_001270082.1| oligoribonuclease [Pseudomonas putida F1]
gi|37999402|sp|Q88DC5|ORN_PSEPK RecName: Full=Oligoribonuclease
gi|166216581|sp|A5W9T8|ORN_PSEP1 RecName: Full=Oligoribonuclease
gi|24986668|gb|AAN70469.1|AE016688_8 oligoribonuclease [Pseudomonas putida KT2440]
gi|148514038|gb|ABQ80898.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas putida F1]
gi|313500881|gb|ADR62247.1| Orn [Pseudomonas putida BIRD-1]
Length = 180
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 64/208 (30%), Gaps = 42/208 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
+ + D E G D D + A + D + + V +D+ L D
Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFY 111
G + Q+ V AE + F C N+I D R Y
Sbjct: 64 THGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICG---NSICQD----RRFLY 116
Query: 112 RNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
R+ + + + N D+ + ++PD SFK
Sbjct: 117 RHMRNLENYFHYRN----LDVSTLKELAARWAPDV---------RDSFK----------- 152
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
N H A D+ ++A + RE KL
Sbjct: 153 KGNTHLALDDIRESIAELRHYREHFIKL 180
>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
4796]
gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC
4796]
Length = 1437
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + + +T IT
Sbjct: 420 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 475
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + EA ++ F+ C +N++FD + RN +
Sbjct: 476 -DEMVSAADDEAIVIKQFQDFYGDRPLCG---HNVQFDVGFVNAALRRNGFSEI------ 525
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L LA + + H A D AT
Sbjct: 526 ---TQPVVDTLEVSRLLHP--------EQNRHT--LDSLAKKYNVSLEHHHRANQDAEAT 572
>gi|281491483|ref|YP_003353463.1| DNA polymerase III subunit epsilon [Lactococcus lactis subsp.
lactis KF147]
gi|281375201|gb|ADA64714.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
KF147]
Length = 277
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 42/201 (20%), Positives = 65/201 (32%), Gaps = 41/201 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ +V++D+ET G + Q V+ D ++ K Y+ E +
Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQL-VKNQRSYV-STEITQL 58
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGI P L +E EF I V + N FD + Y+ D
Sbjct: 59 TGIKPADLLNQPTIEEILPEFLDFIKGHLLVAH-------NAPFDISF----LYQAIIDC 107
Query: 118 YRWSWDNGNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ +D L + + YA FK DL N +
Sbjct: 108 AITDVEAFRV-YDTLAESKKLLTMSSYALEN--------------FK--DLLEMNDLRS- 149
Query: 173 NAHDAKADVYATLALVWLIRE 193
HDA D T L +++
Sbjct: 150 --HDALNDCLITAKLYQYLQK 168
>gi|332536010|ref|ZP_08411688.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
gi|332034620|gb|EGI71185.1| oligoribonuclease [Pseudoalteromonas haloplanktis ANT/505]
Length = 181
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + D+ + A V D +
Sbjct: 6 SNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAE 42
>gi|15672964|ref|NP_267138.1| DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
Il1403]
gi|12723925|gb|AAK05080.1|AE006332_9 DNA polymerase III, epsilon chain [Lactococcus lactis subsp. lactis
Il1403]
Length = 277
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 42/201 (20%), Positives = 65/201 (32%), Gaps = 41/201 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ +V++D+ET G + Q V+ D ++ K Y+ E +
Sbjct: 1 MSEKYVVFDFETTGFSAQKNEIIQIGAVKYDENNQEQARFNQL-VKNQRSYV-STEITQL 58
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGI P L +E EF I V + N FD + Y+ D
Sbjct: 59 TGIKPADLLNQPTIEEILPEFLDFIKGHLLVAH-------NAPFDISF----LYQAIIDC 107
Query: 118 YRWSWDNGNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ +D L + + YA FK DL N +
Sbjct: 108 AITDVEAFRV-YDTLAESKKLLTMSSYALEN--------------FK--DLLEMNDLRS- 149
Query: 173 NAHDAKADVYATLALVWLIRE 193
HDA D T L +++
Sbjct: 150 --HDALNDCLITAKLYQYLQK 168
>gi|224023848|ref|ZP_03642214.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
18228]
gi|224017070|gb|EEF75082.1| hypothetical protein BACCOPRO_00565 [Bacteroides coprophilus DSM
18228]
Length = 258
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 69/205 (33%), Gaps = 41/205 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + ++ P PEA
Sbjct: 5 LKNPLVFFDLETTGTNINTDRIVEICYLKVYPNGNE--ESKTMRINPGMHI---PEASSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + D E ++ I + I G+N+ RFD F R D
Sbjct: 60 IHGIY-DADVADCPTFKEVAKDIARDL--EGADIAGFNSNRFDVPVLVEEFLRAGIDIDL 116
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
+DV + KL+ L+ A G +
Sbjct: 117 TRRK-------FIDVQVIYH-------------------KLEQRTLSAAYKFYCGKNLED 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A+AD AT ++ + P +
Sbjct: 151 AHTAEADTRATYEVLKAQLDHYPDV 175
>gi|86741790|ref|YP_482190.1| hypothetical protein Francci3_3104 [Frankia sp. CcI3]
gi|86568652|gb|ABD12461.1| DNA polymerase III, epsilon subunit [Frankia sp. CcI3]
Length = 584
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 64/197 (32%), Gaps = 37/197 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D ET G D + VRV + +P +P P +TGI
Sbjct: 29 TFVVFDLETTGTSPGRDEITEIGAVRVRGG-RILAEMATL-VRPGVG-IP-PMVSVLTGI 84
Query: 64 T-PQKALRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T A V + EF+R ++ +N FD + R Y
Sbjct: 85 TDVMVATAPPVTQVLPTFLEFAR---------GAVLVAHNA-PFDLGFLRAAVELCGYPV 134
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
W + LD +R D + +L LA H A
Sbjct: 135 PVWEY---------LDTLRIARRV--------VTRDESPDCRLTSLASLFRSPVEPRHRA 177
Query: 178 KADVYATLALVWLIREK 194
AD AT+ ++ + E+
Sbjct: 178 LADARATVDVLHGLFER 194
>gi|42525158|ref|NP_970538.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
gi|39577369|emb|CAE81192.1| DNA polymerase III alpha subunit [Bdellovibrio bacteriovorus HD100]
Length = 217
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 29/178 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
F+ +D ET G +D+ + VR + E F D P P A + GI
Sbjct: 15 FIAFDLETTGTVPGVDQIVEIGAVR----F-IDGQPEAIFATLIDPLRPIPPGASAVNGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + G + F + + +N FD + D +
Sbjct: 70 SDD--MVKGKPLIDTILPAFAEFCGEDVLVA--HNAPFDSQFL-------IADIKKHETT 118
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+LD + P G ++KL L I N H A+ D
Sbjct: 119 APRGV--ILDSLPIARKVFP----------GLPNYKLGTLVQHLKIPTSNFHRAEEDA 164
>gi|270004806|gb|EFA01254.1| three prime repair exonuclease [Tribolium castaneum]
Length = 232
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 44/223 (19%), Positives = 67/223 (30%), Gaps = 54/223 (24%)
Query: 1 MTN--HFVIYDYETFGRDV---ALDRPAQFA--GVRVDRQWEKIESTEVFFCKPA----- 48
M+ FV +D ET G R +F VR D I CK
Sbjct: 1 MSEIKTFVFFDLETTGLPKFEENRTRITEFCAVAVRADH----IGLQTAQKCKLPRVQSK 56
Query: 49 ------DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIR 100
P+A +TG++ + ++ I + + C++ +N
Sbjct: 57 LSLCFNPARAICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNE 116
Query: 101 FDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL--LDVMRAIYAFS----------PDGIQW 148
FD R N D+ LD + A P+ I+
Sbjct: 117 FDFPILRAEI----------ENTGENLPEDILCLDSIIAFKEIDTLEGGAVINQPNEIKI 166
Query: 149 PSRDDG---ATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
D FK + L+ +NAH A+ DV LA
Sbjct: 167 RKIDTSYNLGHVFK-RRLSK----RPLNAHGAEGDVNMLLACA 204
>gi|113461243|ref|YP_719312.1| oligoribonuclease [Haemophilus somnus 129PT]
gi|112823286|gb|ABI25375.1| oligoribonuclease [Haemophilus somnus 129PT]
Length = 184
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D +R + A + D+ +
Sbjct: 6 QNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAE 42
>gi|299066912|emb|CBJ38107.1| oligoribonuclease [Ralstonia solanacearum CMR15]
Length = 219
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G DR + A V D + + V D+ L
Sbjct: 28 NNLVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDELL 77
>gi|260592337|ref|ZP_05857795.1| exonuclease [Prevotella veroralis F0319]
gi|260535724|gb|EEX18341.1| exonuclease [Prevotella veroralis F0319]
Length = 283
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+T +++D ET G D+ DR Q + ++V ++ E FF P P V
Sbjct: 5 LTKPLIVFDLETTGLDLVADRIIQISYIKVYADGKE--ERENFFINPGKHI---PTIVTE 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ + + D + ++ + F+ G+N+ RFD F R D
Sbjct: 60 LTGIS-DEDVADAPTFKQKAKELADKFA--GCDFAGFNSNRFDVPMLAEEFLRAGID 113
>gi|169627433|ref|YP_001701082.1| DNA polymerase III subunit epsilon [Mycobacterium abscessus ATCC
19977]
gi|169239400|emb|CAM60428.1| DNA polymerase III, epsilon subunit (DnaQ) [Mycobacterium
abscessus]
Length = 327
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 34/202 (16%), Positives = 60/202 (29%), Gaps = 45/202 (22%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +V+ D ET G R A + +D +S DP +
Sbjct: 11 SPKWVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSL---LNPGV--DPGPTHVH 65
Query: 62 GITPQKALRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
G+TP+ +G E + + V + Y+ + +
Sbjct: 66 GLTPEML--EGQPEFSDIAPDLIALLRGRTLVAHNVGFDYSFLAAEAELV--------GA 115
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
VM + + P + +L+ LA G+E + AHD
Sbjct: 116 ELPTE-----------AVMCTVELTRRLELDTP-------NLRLETLAAHWGVEQLKAHD 157
Query: 177 AKADVYATLALVWLIREKKPKL 198
A D ++ E PK+
Sbjct: 158 AYDD-------ARVLAEVLPKV 172
>gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
23970]
gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
23970]
Length = 244
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F I +N +FD + F R
Sbjct: 53 E-EAAKVHGLTIEVLEEKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|170717217|ref|YP_001784337.1| oligoribonuclease [Haemophilus somnus 2336]
gi|168825346|gb|ACA30717.1| Exonuclease RNase T and DNA polymerase III [Haemophilus somnus
2336]
Length = 184
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D +R + A + D+ +
Sbjct: 6 QNLIWIDLEMTGLDPDKERIIEIATIVTDKDLNILAE 42
>gi|315125481|ref|YP_004067484.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
gi|315013994|gb|ADT67332.1| oligoribonuclease [Pseudoalteromonas sp. SM9913]
Length = 181
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + D+ + A V D +
Sbjct: 6 SNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAE 42
>gi|187931822|ref|YP_001891807.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 230
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 60/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + + A+ I G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYEV--EAGALAIHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + F + Y N
Sbjct: 62 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWEFSLLKNNKYGTLEQN 117
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 118 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 163
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 164 LLADVYLAM 172
>gi|163848275|ref|YP_001636319.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
J-10-fl]
gi|222526189|ref|YP_002570660.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
gi|163669564|gb|ABY35930.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450068|gb|ACM54334.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
Length = 232
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 24/185 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D V ++ ++ T KP D P E++ + +TP +
Sbjct: 41 DVETTGLDTRHDALIAVGAVNIENGRVLLKQTWYSLIKPPPDREPSVESIRVHHLTPAEL 100
Query: 69 LRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
E AE RRI V + ++RF + + + G
Sbjct: 101 QNAPPAEEVLAELLRRIAGRVLV---VHVAQVDVRFINAALK---------PF-----GG 143
Query: 126 NSRWDLLDVMRAIYAFSPDGIQW---PSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
R +LD R + +W D + +L+ LA A G+ H+A D
Sbjct: 144 KLRRPILDTARLALTLHMNA-RWLGEQPHDMPDPAIELRGLATALGLPVYAQHNALNDAV 202
Query: 183 ATLAL 187
T L
Sbjct: 203 TTAQL 207
>gi|152975065|ref|YP_001374582.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152023817|gb|ABS21587.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
cytotoxicus NVH 391-98]
Length = 929
Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 37/193 (19%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P P
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEGG--EILEIFSSFVNPKRE-IP-PFIT 56
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI + ++ + + + I + + +N + FD NF
Sbjct: 57 ELTGID-ENLVKQAPLFQDVAPMIVELLQ--GASFVAHN-VHFD---------WNFLK-- 101
Query: 119 RWSWDNGNSRWDL----LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
D+ +D + P S+KL+DLA + +EH
Sbjct: 102 --EELKQAGYADIHCPKIDTVELAQILLPTA----------DSYKLRDLAKKHELEHDQP 149
Query: 175 HDAKADVYATLAL 187
H A +D AT L
Sbjct: 150 HRADSDALATAEL 162
>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
fibrisolvens 16/4]
Length = 1480
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 32/187 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + ++ + V+ + E ++ F + +P P IT
Sbjct: 446 DEYVVFDIETTGFNPKNNKIIEIGAVKF-KDGEIVDHFSEFI----NPEVPIPY--RITE 498
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+T D V++A I F T ++ +N FD + R + +
Sbjct: 499 LT--SITDDMVLDAPTIDVILPKFMEFCKGTVLVAHNA-GFDTSFIRYNCKQLGLEYDYT 555
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + P+ F L + + + + H A AD
Sbjct: 556 H----------VDTVEVARYLHPN----------NARFNLDAVCKLENVVNEHHHRAVAD 595
Query: 181 VYATLAL 187
T +
Sbjct: 596 AEVTAKI 602
>gi|288926239|ref|ZP_06420165.1| exonuclease [Prevotella buccae D17]
gi|315606363|ref|ZP_07881379.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
gi|288337018|gb|EFC75378.1| exonuclease [Prevotella buccae D17]
gi|315252054|gb|EFU32027.1| DNA polymerase III epsilon chain [Prevotella buccae ATCC 33574]
Length = 284
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T V++D ET G D+ DR Q + ++V ++ E+ PE +
Sbjct: 5 LTKPLVVFDLETTGLDLVNDRVIQLSYIKVCPDGTELRGNEII----NPGKPIAPEITAL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
TGI+ ++D E + R+ + F G+N+ FD F R D
Sbjct: 61 TGIS-DDDVKDRPAFKELAPRLAEEF--KGCDFAGFNSNHFDIPMLAEEFLRAGID 113
>gi|23099217|ref|NP_692683.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Oceanobacillus iheyensis HTE831]
gi|22777446|dbj|BAC13718.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
Length = 939
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 40/195 (20%), Positives = 67/195 (34%), Gaps = 32/195 (16%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVF 59
N FV+ D ET G + D+ + V ++ E I++ FF +P P
Sbjct: 2 NRFVVIDLETTGHAPSKNDKIIEIGMVIIEGD-EIIDTKTTFFNPGQPIP-----PFITN 55
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI+ + D + E + I +N+ FD + N D
Sbjct: 56 LTGIS-DDDVADAPLFTEKALSIKSILEDSYIIA---HNVNFDLGFLNAELKENGIDRL- 110
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+LD + P +KL L+ ++H + H A +
Sbjct: 111 --------HNQVLDTVELSRILFPTA----------PGYKLSQLSDHFNLQHDDPHRALS 152
Query: 180 DVYATLALVWLIREK 194
D Y T L + +K
Sbjct: 153 DAYVTAKLFQKLMDK 167
>gi|120553834|ref|YP_958185.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
gi|120323683|gb|ABM17998.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
Length = 235
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 74/235 (31%), Gaps = 51/235 (21%)
Query: 9 DYETFGRDVALDRPAQFAG-------VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
D ET G + + D + ++ Q++ I +P D E V I
Sbjct: 45 DLETTGLNASKDEVIAIGAVAIEGGVIHLNDQFDLILR------RPELDIR---ETVLIH 95
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI P +AL G + + ++ + I+ Y++ FD + +
Sbjct: 96 GIGP-EALTQGYETQDALLYLLEWMNGDP--ILAYHS-AFDQKFLEKTLKSQLGYTLPHV 151
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W +DV + AF P G L D A G+E H A AD
Sbjct: 152 W---------MDVAELMPAFFPKA-----TIKGRG---LDDWADVFGLEISERHHAAADA 194
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSN 236
T L LI + KN ++ L ++ +H
Sbjct: 195 LVTAELA-LI----------ALNKARKNDVKTLKELSEK---LHYQRRLQHMHRY 235
>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum B1 str. Okra]
Length = 1432
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 42/189 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFVNPERSIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFY 115
T IT E +I F IG + N FD +
Sbjct: 470 TSITDDMVDDK-----EAIDKILPRFIE----FIGDSVVVAHNAAFDASFINKNC----- 515
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ + N ++D + P+ +KL +A GI N H
Sbjct: 516 KDLKIEFKNS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHH 560
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 561 RAVDDAKAT 569
>gi|307326746|ref|ZP_07605938.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
gi|306887509|gb|EFN18503.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
Length = 241
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 8 YDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+D ET G DV DR A V R +I V + P A I G+T
Sbjct: 12 FDTETTGVDVEHDRIVSAALVVQRGTGSLPEIRRWLV-----SPGVPVPPAATEIHGLTD 66
Query: 66 QKALRDGVVEA----EFSRRIHQFFSVPNTCII 94
R G A E +R I + + ++
Sbjct: 67 AHLQRHGRWPAPVMDEMARAIAEQTARGTPLVV 99
>gi|172040912|ref|YP_001800626.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
gi|171852216|emb|CAQ05192.1| putative exonuclease [Corynebacterium urealyticum DSM 7109]
Length = 270
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 26/195 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQK 67
D ET G + A DR + A V + F C + +P E+ I G
Sbjct: 95 DLETTGLEPATDRVIEIA-VLTVEHGSIVG---SFHCLLNPECSIPG-ESSNING----- 144
Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
D V + + Q V N ++G+N ++FD + + R +
Sbjct: 145 LRDDDVANSPTFAEVAQELLPHVLNRTLVGHN-VKFDVGFLAAEYARLGHADAARVLTEQ 203
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
L A + + I P G + L +LA G+ AH A+ D T
Sbjct: 204 C-----LPQALCTAATARELI--PREAVGRYT--LANLAAHCGLASSPAHRAQQDAATTF 254
Query: 186 ALVWL---IREKKPK 197
L I ++ P+
Sbjct: 255 DLTHRLYTIAQEPPR 269
>gi|77359452|ref|YP_339027.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
gi|123587965|sp|Q3IG97|ORN_PSEHT RecName: Full=Oligoribonuclease
gi|76874363|emb|CAI85584.1| oligoribonuclease [Pseudoalteromonas haloplanktis TAC125]
Length = 181
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + D+ + A V D +
Sbjct: 6 SNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAE 42
>gi|255020848|ref|ZP_05292904.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
gi|254969639|gb|EET27145.1| Oligoribonuclease [Acidithiobacillus caldus ATCC 51756]
Length = 200
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
T V D E G + D+ + A + D + +
Sbjct: 5 TQRLVWIDLEMTGLNPERDQILEIASIVTDNELRVLSE 42
>gi|237653313|ref|YP_002889627.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
gi|237624560|gb|ACR01250.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
Length = 769
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 46/199 (23%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRV-------DRQWEKIESTEVFFCKPADDYLPDP 55
+ ++D ET G + + D Q R+ +E++ E +P P
Sbjct: 578 SYTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLVDPE----RPL-----AP 628
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRN 113
E+ I GIT + ++ F +T +I +N FD + +
Sbjct: 629 ESAKIHGITSEMLRGQPT-----IDKVLPAFHAFAADTVLIAHNA-AFDMRFLQ------ 676
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ ++D + P+ S +L+ +A G+ V
Sbjct: 677 ----LKEEQTGLRFDHPVIDTLLLSAVVHPN----------QESHRLEAIAERLGLTIVG 722
Query: 174 AHDAKADVYATLAL-VWLI 191
H A D T + + LI
Sbjct: 723 RHTALGDAIVTAEVFLKLI 741
>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
Length = 1449
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 30/186 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + A V+V + +I+S E + P P + IT +
Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGTEIDSFES-YINPQR-----PISELITRL 480
Query: 64 TPQ--KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +RD +E E + + + + +N +FD + F R ++
Sbjct: 481 TSITNDDVRDAPLEKEVMTNFYNWLDKDDILVA--HNAKFDLGFLDTCFERLGLEN---- 534
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N+ D L V RA + L +LA + V H A D
Sbjct: 535 --KNNASIDTLFVSRA------------ENKEAKRH-GLSNLAKLYKVRLVQHHRAIYDT 579
Query: 182 YATLAL 187
AT +
Sbjct: 580 KATAEI 585
>gi|308807965|ref|XP_003081293.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
gi|116059755|emb|CAL55462.1| DNA helicase RecG (ISS) [Ostreococcus tauri]
Length = 1259
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 49/155 (31%), Gaps = 26/155 (16%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGV-RVD--RQWEKIESTEVFFCKPADDYLPDPEAVF 59
+++D ET G R + A D + + + F PA L
Sbjct: 193 PSIIVFDLETTGLSKEKSRIIELAAQSLTDPSAAFSTLVNPGRFNIPPAIKAL------- 245
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF------SVPNT--CIIGYNNIRFDDYYSRNIFY 111
TGIT V + + F S P ++ +N +FD + + Y
Sbjct: 246 -TGITNSMVSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYE-Y 303
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGI 146
R SW D L + R PDG+
Sbjct: 304 RRLGRELPSSW----RFCDTLPLAR--QLLRPDGL 332
>gi|163937886|ref|YP_001642772.1| exonuclease RNase T and DNA polymerase III [Bacillus
weihenstephanensis KBAB4]
gi|163865741|gb|ABY46797.1| Exonuclease RNase T and DNA polymerase III [Bacillus
weihenstephanensis KBAB4]
Length = 271
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 40/189 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF----CKPADDYLPDPEAVFI 60
F ++D ET G D ++ + A +R D + +++ + K D+L D +
Sbjct: 14 FTVFDLETTGLDYKNEQVVEIAAIRTDLE-QELGRMHILVKLNEGKKLPDFLVDNTDLR- 71
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
L +G+VE + + F N+ ++ + ++
Sbjct: 72 -----DYMLVNGMVEHQALINLMAFMG--NSIVV-----AHYAPFDFAYLFKALIAP--- 116
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
++ + + + P + S L A G++ AH A D
Sbjct: 117 ------------ELFLCTRSI--ERLLTPDK-----SASLAPTAERRGVKLEGAHRAMND 157
Query: 181 VYATLALVW 189
+ AT+ ++
Sbjct: 158 IEATIGVLK 166
>gi|288803395|ref|ZP_06408828.1| exonuclease [Prevotella melaninogenica D18]
gi|288334215|gb|EFC72657.1| exonuclease [Prevotella melaninogenica D18]
Length = 284
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 11/118 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+T +++D ET G D+ DR Q + ++V ++ E F P P P E
Sbjct: 5 LTKPLIVFDLETTGLDLVNDRIIQISFIKVHPDGKE--ERENIFINPEK---PIPAEVTL 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTC-IIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ F ++ C GYN+ RFD F R D
Sbjct: 60 LTGISDADVADA----PTFKQKAKDLSDKFAGCDFAGYNSNRFDVPMLAEEFLRAGVD 113
>gi|260913837|ref|ZP_05920311.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
gi|260631924|gb|EEX50101.1| oligoribonuclease [Pasteurella dagmatis ATCC 43325]
Length = 184
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|224824186|ref|ZP_03697294.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
2002]
gi|224603605|gb|EEG09780.1| Exonuclease RNase T and DNA polymerase III [Lutiella nitroferrum
2002]
Length = 181
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G + DR + A V D Q + + V D L
Sbjct: 6 NNLIWLDMEMTGLNPDSDRIIEIAVVVTDGQLNVLAESPVLAIHQPDSVL 55
>gi|126667590|ref|ZP_01738560.1| exonuclease [Marinobacter sp. ELB17]
gi|126628016|gb|EAZ98643.1| exonuclease [Marinobacter sp. ELB17]
Length = 232
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 25/189 (13%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVF 59
+T+ ++ D ET G + A D+ V ++ ++ ++ +P D + V
Sbjct: 34 VTSRLIVLDLETTGLNPAKDQMIAIGAVAINNNAMPLDDQFDLILRRPELDIR---KTVL 90
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI P +AL G + + + + I+ Y++ FD +
Sbjct: 91 IHGIGP-EALTAGHETEDALLHLLDWMNGDP--ILAYHS-AFDQKFLEKTLRAELGYGEN 146
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W LDV + AF P + G L + A G++ H A A
Sbjct: 147 HIW---------LDVAELMPAFFPTA---NKQRKG-----LDNWADTFGLQASARHHAAA 189
Query: 180 DVYATLALV 188
D T L
Sbjct: 190 DAMVTAELT 198
>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
Length = 231
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 66/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD F Y+ N N+
Sbjct: 55 MVKGSDPIDVVLKQFREWSGDDILVA--HNASFD-----MGFINTAYEKVGLEKAN-NAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|229010951|ref|ZP_04168147.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
2048]
gi|229132450|ref|ZP_04261304.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
BDRD-ST196]
gi|228651156|gb|EEL07137.1| DnaQ family exonuclease/DinG family helicase [Bacillus cereus
BDRD-ST196]
gi|228750351|gb|EEM00181.1| DnaQ family exonuclease/DinG family helicase [Bacillus mycoides DSM
2048]
Length = 934
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 33/191 (17%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P +
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKRE-IP----L 53
Query: 59 FITGIT-PQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
FIT +T + ++ + + + I + + +N + FD NF +
Sbjct: 54 FITELTGIDENLVKQAPLFRDVAPMIVELLQ--GAAFVAHN-VHFD---------WNFLN 101
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D + P S+KL+DLA + +EH H
Sbjct: 102 EELRQAGYTEVHCPKIDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHR 151
Query: 177 AKADVYATLAL 187
A +D AT L
Sbjct: 152 ADSDALATAEL 162
>gi|163939458|ref|YP_001644342.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus weihenstephanensis KBAB4]
gi|163861655|gb|ABY42714.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
weihenstephanensis KBAB4]
Length = 934
Score = 47.1 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 33/191 (17%)
Query: 1 MTNHFVIYDYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ +V+ D ET G D+ Q A V V+ +I F P + +P +
Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKRE-IP----L 53
Query: 59 FITGIT-PQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
FIT +T + ++ + + + I + + +N + FD NF +
Sbjct: 54 FITELTGIDENLVKQAPLFRDVAPMIVELLQ--GAAFVAHN-VHFD---------WNFLN 101
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D + P S+KL+DLA + +EH H
Sbjct: 102 EELRQAGYTEVHCPKIDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHR 151
Query: 177 AKADVYATLAL 187
A +D AT L
Sbjct: 152 ADSDALATAEL 162
>gi|312882822|ref|ZP_07742555.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369514|gb|EFP97033.1| oligoribonuclease [Vibrio caribbenthicus ATCC BAA-2122]
Length = 181
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 48/206 (23%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLP 53
+ + + D E G D + + A + DR+ + EV K D
Sbjct: 5 SQNLIWIDLEMTGLDPEEHKIIEIATIVTDRELNILAEGPVLAIHQPEVELAKMDDWCTN 64
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSR 107
A +G+ ++ + E + F C N++ D R
Sbjct: 65 THTA---SGL-VERVQSSAISEHSAVSQTIDFLEKWVPKGASPICG---NSVGQD----R 113
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
Y++ + + D+ + + P+ +
Sbjct: 114 RFLYKHM--PKLEEYFHY-RYLDVSTLKELTRRWKPEVLD-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
G H A D+ ++A + R+
Sbjct: 151 GFSKAGTHLALDDIRESIAELRYYRK 176
>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
Length = 1439
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
Length = 1439
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
Length = 1439
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|158313649|ref|YP_001506157.1| hypothetical protein Franean1_1813 [Frankia sp. EAN1pec]
gi|158109054|gb|ABW11251.1| DNA polymerase III, epsilon subunit [Frankia sp. EAN1pec]
Length = 603
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 66/198 (33%), Gaps = 39/198 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-TG 62
FV+ D ET G A + VRV + + +P+ P P + + TG
Sbjct: 28 TFVVVDLETTGGSPATSEITEIGAVRVRGG-QILGEMSSL-VRPSA---PIPAFISVLTG 82
Query: 63 ITPQK-ALRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT A G+ E EF+R ++ +N FD + R Y
Sbjct: 83 ITGAMVATAPGIGEVVPTFLEFAR---------GAVLVAHNA-PFDLGFLRAAATACGYP 132
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ W LD +R D +L LA G H
Sbjct: 133 APAWEH---------LDTVRIARRV--------ISRDETRDCRLSSLAALFGSATQPNHR 175
Query: 177 AKADVYATLALVWLIREK 194
A AD AT+ ++ + E+
Sbjct: 176 ALADARATVDVLHGLFER 193
>gi|262371112|ref|ZP_06064434.1| oligoribonuclease [Acinetobacter johnsonii SH046]
gi|262313998|gb|EEY95043.1| oligoribonuclease [Acinetobacter johnsonii SH046]
Length = 184
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V D L
Sbjct: 1 MSSTADTRLIWIDLEMTGLDTDNDQIIEVATIVTDDNLNILAEGPVLAVHQPDRVL 56
>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
Length = 1439
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
Length = 1439
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum 5521]
gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 1472
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 47/219 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITG 62
+ + D ET G L++ + G+ + + I+ F KP P V +T
Sbjct: 446 YCVLDLETTGFSPKLEKITEI-GIMKVKDGKVIDKFSTFVNPEKPIP-----PRVVEVTN 499
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
IT AE ++ + ++ +N FD F R++
Sbjct: 500 ITDDMVRN-----AETIDKVFPKMLEFIEGSILVAHNA-EFD-----IGFLRHYAKVLGH 548
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + LD + P S+KL +A GI+ AH A D
Sbjct: 549 DFD-----FTYLDTLSLAQDLFPQ----------YKSYKLGRIAKNLGIKVEVAHRALDD 593
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
V T+ K+F + D + + L DI+
Sbjct: 594 VDTTV-----------KVFNVMIDMLKERGAKTLSDIET 621
>gi|187477876|ref|YP_785900.1| oligoribonuclease [Bordetella avium 197N]
gi|123515337|sp|Q2L2P5|ORN_BORA1 RecName: Full=Oligoribonuclease
gi|115422462|emb|CAJ48987.1| oligoribonuclease [Bordetella avium 197N]
Length = 181
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 46/209 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
N V D E G D +R + A V + + V +D L EA+
Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQSDSVL---EAMDNWN 62
Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNI 109
G + K + EA+ +++ F S C N I D R +
Sbjct: 63 KSTHGKSGLIDKVRASTLTEAQAEQQLIDFLSQYVPAGKSPLCG---NTISQDR---RFM 116
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F + + + N D+ + ++P + SF
Sbjct: 117 F--AYMPNLERFFHYRN--LDVSTLKELARRWAPAVYK---------SF----------- 152
Query: 170 EHVNAHDAKADVYATLALVWLIREKKPKL 198
E + H+A AD+Y ++ + RE KL
Sbjct: 153 EKKSRHEALADIYESIDELKHYREHFLKL 181
>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
Length = 1432
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 36/186 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFVNPERSIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T IT E +I F N+ ++ +N FD +
Sbjct: 470 TSITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNA-AFDVSFINKNC-----KDL 518
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ + N ++D + P+ +KL +A GI N H A
Sbjct: 519 KIEFKNS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHHRAV 563
Query: 179 ADVYAT 184
D AT
Sbjct: 564 DDAKAT 569
>gi|300214468|gb|ADJ78884.1| ATP-dependent helicase, DinG family [Lactobacillus salivarius CECT
5713]
Length = 929
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 9 DYETFG-RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + D+ QF+ + + F + +P P + +T K
Sbjct: 11 DLETTGPKQDGSDKIIQFSC-----DFVQSNKIVNHFSTLINPGMPIPA--EVKKLTGIK 63
Query: 68 ALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
E + I+ NT + +N + FD + + R Y
Sbjct: 64 NKDVRYAPYFDEVAGTIYAMLQ--NTTFVAHN-VNFDYSFLSSELERAGYPELELP---- 116
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
++D ++ P S++L D++ + H++ H A +D AT
Sbjct: 117 -----MMDTVQLTQIIYPTL----------VSYRLIDVSKYLQLSHIHPHKADSDTKATA 161
Query: 186 ALVWLIREK 194
L+ ++++
Sbjct: 162 ELLINLKKR 170
>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
Length = 1444
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 75/196 (38%), Gaps = 27/196 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G D+ + A V++ + + I+ E + + +T IT
Sbjct: 421 YVVFDVETTGLSAVYDKVIELAAVKM-KDGQVIDQFEEM---IDPGFPLSELTINLTHIT 476
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ G E R+ Q F ++G+N + FD + N + R+ DN
Sbjct: 477 DD--MVHGSKSEEEVFRLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI----DN 528
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + KL LA + + H A D AT
Sbjct: 529 P-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANVDAEAT 573
Query: 185 LALVWLIREKKPKLFE 200
L++ + ++ K++
Sbjct: 574 GYLLYALEKEAAKMYN 589
>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A2 str. Kyoto]
gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A2 str. Kyoto]
Length = 1432
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 36/186 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFVNPERSIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T IT E +I F N+ ++ +N FD +
Sbjct: 470 TSITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNA-AFDVSFINKNC-----KDL 518
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ + N ++D + P+ +KL +A GI N H A
Sbjct: 519 KIEFKNS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHHRAV 563
Query: 179 ADVYAT 184
D AT
Sbjct: 564 DDAKAT 569
>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum F str. Langeland]
gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum F str. 230613]
Length = 1432
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 36/186 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFVNPERSIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T IT E +I F N+ ++ +N FD +
Sbjct: 470 TSITDDMVDDK-----EAIDKILPRFIEFIGNSVVVAHNA-AFDVSFINKNC-----KDL 518
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ + N ++D + P+ +KL +A GI N H A
Sbjct: 519 KIEFKNS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHHRAV 563
Query: 179 ADVYAT 184
D AT
Sbjct: 564 DDAKAT 569
>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
Length = 1439
Score = 46.7 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|322831149|ref|YP_004211176.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
gi|321166350|gb|ADW72049.1| Exonuclease RNase T and DNA polymerase III [Rahnella sp. Y9602]
Length = 184
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G D DR + A + D +
Sbjct: 6 SNLIWIDLEMTGLDPERDRIIEIATLVTDAHLNILAE 42
>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
Length = 1446
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 84/232 (36%), Gaps = 42/232 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + A V+V + +I+S E + P P + IT +
Sbjct: 425 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGAEIDSFES-YINPER-----PISELITRL 477
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +RD VE E + + + + +N +FD + F R ++
Sbjct: 478 TSITDDDVRDAPVEKEVMTDFYNWLDEDDILVA--HNAKFDLGFIDKSFERLGLEN---- 531
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N+ D L + RA + L +LA + V H A D
Sbjct: 532 --KNNASIDTLFISRA------------ENKEAKRH-GLSNLAKMYKVRLVQHHRAIYDT 576
Query: 182 YATLAL-VWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV-SGMFG 231
AT + + ++ + Y N++ ID++ H S F
Sbjct: 577 KATAEIFIKMLNQL------YALGIERHNEIDNKIDLK----FAHTRSRTFP 618
>gi|301166629|emb|CBW26205.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 273
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 28/180 (15%)
Query: 14 GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLP-DPEAVFITGITPQKALR 70
G ++A DR + V D ++ + + +D LP E +TGI L+
Sbjct: 36 GLNLAKDRVTEIGAVLWDTEFN---QPIKIYSELIHEEDRLPISEEIEELTGINDIMLLK 92
Query: 71 DGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G+ E + I+ +N +D R +F R F +
Sbjct: 93 YGLQGDEIRMALERLSIIMKKADFIMAHNGPNYDIPMLRALFER-FRVPFP--------- 142
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
+ S I++P R + L L A+G + H A DV + L +
Sbjct: 143 -------EMKWIDSKTDIEFPKRI---IANSLSALEHAHGFINPFPHRAVTDVLSMLKVA 192
>gi|156392522|ref|XP_001636097.1| predicted protein [Nematostella vectensis]
gi|156223197|gb|EDO44034.1| predicted protein [Nematostella vectensis]
Length = 461
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 44/217 (20%), Positives = 76/217 (35%), Gaps = 51/217 (23%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE-VFFCKPADDYLPDPEAVFITG 62
FV++D ET G D + D Q A + + P + EA G
Sbjct: 155 TFVMFDTETTGLDTSNDVIIQLACA------SENGDPLHSRYMFPGGRSIGS-EATNAHG 207
Query: 63 ITPQ------------------KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
I+ + +DG+ E ++HQ S C++ + FD
Sbjct: 208 ISEAFIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFR 267
Query: 105 YSRNIFYR-NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT---SFKL 160
N R N + + + G+ D + V+RA + + + SFK
Sbjct: 268 LLINCLKRHNLMNEFIST---GSVLLDSVKVVRAS-----------KKQEKSPFDSSFKK 313
Query: 161 QDLALAN----GIEHVNAHDAKADVYATLALVWLIRE 193
+ L+ + G+ HDA+AD AL ++ +
Sbjct: 314 ESLSALHGHLFGVPIDRPHDAQADA---CALSKVLMK 347
>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
Length = 1439
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
Length = 1439
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
Length = 1439
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 413 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 468
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 520
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 521 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 565
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 566 TGHLCWIFLKEAK 578
>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis DAPTO 516]
gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis DAPTO 516]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|320007769|gb|ADW02619.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
flavogriseus ATCC 33331]
Length = 241
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G DV DR A VR++ +P+ +A I GI+ +
Sbjct: 11 FDLETTGTDVETDRIVTAAVVRLEADGSVSAELTWL---LDPGVAIPE-QASAIHGISTE 66
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+A G+ A I + + T ++ N R+D R DS
Sbjct: 67 RAREHGLPAAAAIEEITRAVADGLRSGTPLV-VMNARYDLSLLDRECRRYGVDSV 120
>gi|255534253|ref|YP_003094624.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
3519-10]
gi|255340449|gb|ACU06562.1| DNA polymerase III epsilon subunit [Flavobacteriaceae bacterium
3519-10]
Length = 407
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 30/194 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E+ G + + A + D E ++ P + P + + T I+P K
Sbjct: 6 DIESNGAGFRKESIIEIAVYKYDGH-EIVDQFISL-VNPESEITPFVQKL--TKISP-KM 60
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
++ E +RR+ + NT ++G+N I FD R F R YD
Sbjct: 61 VKTAPKFPEIARRVIEITR--NTILVGHN-IDFDYRMLRQEFKRLGYD----------FT 107
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
+ LD + P+ S+ L L + GI V+ H A D ATL L
Sbjct: 108 INTLDTIPLAKKLIPEA----------ESYSLGKLVKSLGIPLVDQHRASGDARATLDLF 157
Query: 189 W--LIREKKPKLFE 200
LI++K ++ +
Sbjct: 158 KLLLIKDKNSEIIQ 171
>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis TUSoD Ef11]
gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis TUSoD Ef11]
gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|294625309|ref|ZP_06703946.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600378|gb|EFF44478.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 194
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 64/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
+ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETL----EAMDE 63
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ L V A+ + F S C N+I D
Sbjct: 64 WNRNQHRRSGLW-QRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCG---NSICQD---- 115
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P +A
Sbjct: 116 RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP--------------------TVA 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 153 NGFAKSSAHTALSDVRDSIDELRHYRQ 179
>gi|227548945|ref|ZP_03978994.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078970|gb|EEI16933.1| DNA polymerase III epsilon subunit [Corynebacterium lipophiloflavum
DSM 44291]
Length = 472
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 30/181 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD--DYLPDPEAVFITG 62
FV +D ET + A Q VRV ++E + C P D DP V I G
Sbjct: 122 FVGFDVET--ANPAWGSICQIGLVRV-IDGREVER-VTWLCTPPPGLDEF-DPSNVAIHG 176
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I+ + +G A ++RI + + +N +FD R
Sbjct: 177 ISAETV--EGSPPA--AQRIDELVEFVGELPVVAHNAQFDATALREACRAVGR------- 225
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D+ ++M A + ++ +L LA G++ HDA D
Sbjct: 226 -------DIPNIMFACTLAQSRAAKLKVQNH-----RLPTLAEHFGVQLEKHHDAGEDAA 273
Query: 183 A 183
A
Sbjct: 274 A 274
>gi|189467072|ref|ZP_03015857.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
17393]
gi|189435336|gb|EDV04321.1| hypothetical protein BACINT_03455 [Bacteroides intestinalis DSM
17393]
Length = 256
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 75/223 (33%), Gaps = 50/223 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVF 59
+ N V +D ET G + +DR + ++V + + P PE A
Sbjct: 5 LKNPIVFFDLETTGTSINVDRIVEICYLKVHPNGNE--EAKTLRINPEMHI---PEGASA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GI + D E +R I + G+N+ RFD F R D
Sbjct: 60 VHGIYDADVV-DCPTFKEVARTIANDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVDIDL 116
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
SR +DV + KL+ L+ A G +
Sbjct: 117 -------SRRKFVDVQVIFH-------------------KLEQRTLSAAYKFYCGKNLED 150
Query: 174 AHDAKADVYATLA--LVWLIREKKPKL-----FEYLYDYRNKN 209
AH A AD AT + L ++ P+L F Y NKN
Sbjct: 151 AHTAAADTQATYEVLMAQL--DRYPELQNDIAFLAEYSSFNKN 191
>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis V583]
gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis PC1.1]
gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis PC1.1]
gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecalis 62]
gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
Length = 1451
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + IE+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 481 T-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA---- 532
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S +L L+ G+ H A D +
Sbjct: 533 NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSES 577
Query: 184 TLALVWL-IREKK 195
T L W+ ++E K
Sbjct: 578 TGHLCWIFLKEAK 590
>gi|262193953|ref|YP_003265162.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262077300|gb|ACY13269.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 180
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 64/190 (33%), Gaps = 25/190 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFITG 62
V D ET G D + A +RV + + E V +P +D DPEA+ + G
Sbjct: 4 LVFIDCETTGLDPEEHEILEIAAIRVHPRTLEEERALVLRVRPERLEDA--DPEALEVNG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
++A D V + + + G+N + FD F +D
Sbjct: 62 YR-RRAWADAVSLGDAMSELAPML--EGAVLAGHN-VAFD-----RSFLEAAWDYVGHRP 112
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHVNAHDAKADV 181
+N +A + +P G S L + G+ H A DV
Sbjct: 113 EN-----------LDHHALDTATLAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDV 161
Query: 182 YATLALVWLI 191
A L + +
Sbjct: 162 RACLGVARRL 171
>gi|320540682|ref|ZP_08040312.1| putative exonuclease I [Serratia symbiotica str. Tucson]
gi|320029255|gb|EFW11304.1| putative exonuclease I [Serratia symbiotica str. Tucson]
Length = 40
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 431 SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
R+++Y +L++L +Y D+ K L++AL++Y + +
Sbjct: 2 ERVQKYLLQLEALYNQYASDKEKIALLHALFDYGRELA 39
>gi|300767360|ref|ZP_07077272.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|300495179|gb|EFK30335.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
Length = 936
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 38/192 (19%)
Query: 2 TNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---DPEA 57
+ + D ET G DR Q V + I + A D P P A
Sbjct: 6 NTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNN-KIINTF-------ATDVNPLTTVP-A 56
Query: 58 VF--ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGI+ + R + + ++ T + +N + FD + + R Y
Sbjct: 57 VIENLTGISNARV-RKAPPFDDLAGTVYSLLQ--GTVFVAHN-VNFDLPFINSELQRVGY 112
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P +SF+L+DL+ I+H + H
Sbjct: 113 PELPIQ---------AVDTVSLSQILLPTA----------SSFRLRDLSHLLAIDHNHPH 153
Query: 176 DAKADVYATLAL 187
A +D AT L
Sbjct: 154 SADSDAIATAHL 165
>gi|227431886|ref|ZP_03913909.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352353|gb|EEJ42556.1| DNA-directed DNA polymerase III epsilon subunit [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 797
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 36/188 (19%)
Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQW----EKIESTEVFFCKPADDYLPDPE 56
+ FV+ D ET G V R Q + + ++ E F L D +
Sbjct: 4 NDTFVVVDLETTGHSVKKGGRIIQIG-----MTFIKKRQIVDHFESF---VNPGQLIDRQ 55
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+T I+ + E + Q NT II +N + FD Y + F R +
Sbjct: 56 IQQLTHIS--QKDVQNAPYFEEIAPLLQNLLQ-NTVIIAHN-VNFDYPYLNDEFERTGFQ 111
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ + +D ++ P ++L DL I NAH
Sbjct: 112 LLKSA---------AIDTVQLAQILFPMA----------PGYRLLDLTTYLNITLKNAHR 152
Query: 177 AKADVYAT 184
A AD +AT
Sbjct: 153 ANADAHAT 160
>gi|240144403|ref|ZP_04743004.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
L1-82]
gi|257203586|gb|EEV01871.1| putative DNA polymerase III, alpha chain [Roseburia intestinalis
L1-82]
Length = 235
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 36/194 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+ D E G + D + VRV R + ++ C+ + +P+ + +TGIT
Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ--NVKIPE-KVTELTGIT 59
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR----NFYDSYRW 120
+A+ G +E E + R F + I+G N I FD F + N
Sbjct: 60 --EAMVQGGMEKEEAMRQFFEFIGED-IIVGQNVI-FD-----YGFLKQWAVNHNMPLER 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
S +D ++ F P + D L+ L G++ NAH A D
Sbjct: 111 S---------AVDTLKLARKFLPK----EQKKD------LESLCAYFGVKRENAHRAFDD 151
Query: 181 VYATLALVWLIREK 194
Y T + +RE+
Sbjct: 152 AYETWQIYEALRER 165
>gi|258624475|ref|ZP_05719421.1| oligoribonuclease [Vibrio mimicus VM603]
gi|258583224|gb|EEW08027.1| oligoribonuclease [Vibrio mimicus VM603]
Length = 181
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + V E E + F C N+I D R YR
Sbjct: 66 HTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICG---NSIGQD----RRFLYR 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|254556626|ref|YP_003063043.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
gi|254045553|gb|ACT62346.1| ATP-dependent helicase DinG [Lactobacillus plantarum JDM1]
Length = 934
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 38/192 (19%)
Query: 2 TNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---DPEA 57
+ + D ET G DR Q V + I + A D P P A
Sbjct: 4 NTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNN-KIINTF-------ATDVNPLTTVP-A 54
Query: 58 VF--ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGI+ + R + + ++ T + +N + FD + + R Y
Sbjct: 55 VIENLTGISNARV-RKAPPFDDLAGTVYSLLQ--GTVFVAHN-VNFDLPFINSELQRVGY 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P +SF+L+DL+ I+H + H
Sbjct: 111 PELPIQ---------AVDTVSLSQILLPTA----------SSFRLRDLSHLLAIDHNHPH 151
Query: 176 DAKADVYATLAL 187
A +D AT L
Sbjct: 152 SADSDAIATAHL 163
>gi|120436251|ref|YP_861937.1| exonuclease family protein [Gramella forsetii KT0803]
gi|117578401|emb|CAL66870.1| exonuclease family protein [Gramella forsetii KT0803]
Length = 223
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 41/221 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
F+++D ET G + DR VR++ +I ++ EVF + +PE V I GI
Sbjct: 39 FIVFDTETTGFNYDEDRVLSIGAVRIENNSIEISDNFEVFLEQKKF----NPETVKIHGI 94
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
Q + + E E ++ + N+ ++ ++ FD RN +
Sbjct: 95 -IQNEKFEKLSELEALKKFLSYIQ--NSVLVAHHA-GFDMKMINKALSRNGLPKLK---- 146
Query: 124 NGNSRWD----LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N D A D I + L ++A A I+ ++ H A
Sbjct: 147 --NKVLDTSILYKKTRIATNFIDRDKI-----------YSLDEIAEAYNIDLIDRHTASG 193
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
D Y T + F L KN+ L DI +
Sbjct: 194 DAYITALI-----------FMKLLSRLKKNKDSTLKDIYKL 223
>gi|308180572|ref|YP_003924700.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|308046063|gb|ADN98606.1| DNA-directed DNA polymerase III epsilon subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 934
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 38/192 (19%)
Query: 2 TNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---DPEA 57
+ + D ET G DR Q V + I + A D P P A
Sbjct: 4 NTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNN-KIINTF-------ATDVNPLTTVP-A 54
Query: 58 VF--ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGI+ + R + + ++ T + +N + FD + + R Y
Sbjct: 55 VIENLTGISNARV-RKAPPFDDLAGTVYSLLQ--GTVFVAHN-VNFDLPFINSELQRVGY 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P +SF+L+DL+ I+H + H
Sbjct: 111 PELPIQ---------AVDTVSLSQILLPTA----------SSFRLRDLSHLLAIDHNHPH 151
Query: 176 DAKADVYATLAL 187
A +D AT L
Sbjct: 152 SADSDAIATAHL 163
>gi|163749340|ref|ZP_02156589.1| oligoribonuclease [Shewanella benthica KT99]
gi|161331059|gb|EDQ01985.1| oligoribonuclease [Shewanella benthica KT99]
Length = 181
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D D+ + A + D++ +
Sbjct: 5 ANNLIWVDLEMTGLDPETDKVIEIATIVTDKELNILAE 42
>gi|169830753|ref|YP_001716735.1| DNA polymerase III subunit epsilon [Candidatus Desulforudis
audaxviator MP104C]
gi|169637597|gb|ACA59103.1| DNA polymerase III, epsilon subunit [Candidatus Desulforudis
audaxviator MP104C]
Length = 921
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 57/190 (30%), Gaps = 46/190 (24%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M+ FV+ D ET G D D + VRV+ P AVF
Sbjct: 1 MSRTFVVLDLETTGLDPQADEIVEVGLVRVEDG--------------------KPGAVFH 40
Query: 61 TGITPQKAL------RDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRN 113
+ P + L G+ +A+ + R P T +G ++ + +
Sbjct: 41 ALVRPSRPLPARIKSLTGLDDADLAERPDWSEVRPAVTAFLG------NEPVVGHHVH-- 92
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+D G D + P G S++L+ L +
Sbjct: 93 -FDLAFLERHAGYRATQAYDTVDLARLVLP----------GLPSYRLELLCAHLDLPERP 141
Query: 174 AHDAKADVYA 183
H A D A
Sbjct: 142 GHRAMEDARA 151
>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
Length = 1431
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 43/207 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEA 57
+ FV++D ET G + + VRV+ + + + E + E
Sbjct: 415 DTFVVFDIETTGLSHLKNNITEIGAVRVESGKIVDVFNGLVNPEQEISQ---------EI 465
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
ITGIT + ++ +E + FS N + +N FD + + R +
Sbjct: 466 TEITGITNEMVADKPLI-SEIMPKFL-EFSK-NAVFVAHNA-EFDISFIKTNCKRLNLEF 521
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+D M A P + KL L G+ +N H A
Sbjct: 522 NPT----------FIDTMGFARAILPHL----------KNHKLNTLCKELGVNLLNHHRA 561
Query: 178 KADVYA----TLALVWLIREKKPKLFE 200
D A L L+ ++ EK+ K+F+
Sbjct: 562 SFDAEACAGILLELIKIV-EKEGKVFD 587
>gi|28378418|ref|NP_785310.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
gi|28271254|emb|CAD64158.1| ATP-dependent helicase DinG [Lactobacillus plantarum WCFS1]
Length = 934
Score = 46.7 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 38/192 (19%)
Query: 2 TNHFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---DPEA 57
+ + D ET G DR Q V + I + A D P P A
Sbjct: 4 NTTYAVVDIETTGTSVKDGDRIIQIGCAFVKNN-KIINTF-------ATDVNPLTTVP-A 54
Query: 58 VF--ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
V +TGI+ + R + + ++ T + +N + FD + + R Y
Sbjct: 55 VIENLTGISNARV-RKAPPFDDLAGTVYSLLQ--GTVFVAHN-VNFDLPFINSELQRVGY 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P +SF+L+DL+ I+H + H
Sbjct: 111 PELPIQ---------AVDTVSLSQILLPTA----------SSFRLRDLSHLLAIDHNHPH 151
Query: 176 DAKADVYATLAL 187
A +D AT L
Sbjct: 152 SADSDAIATAHL 163
>gi|332978247|gb|EGK14977.1| oligoribonuclease [Psychrobacter sp. 1501(2011)]
Length = 193
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 64/218 (29%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---------PDP 55
+ D E G D D + A + D + VF K +D L
Sbjct: 18 LIWIDLEMTGLDTMNDDIIEVATIVTDEDLNILAEGPVFAIKVSDQKLNGMDDWNTKQHG 77
Query: 56 EAVFITG-----ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS---- 106
++ I +T ++A ++ + EF + C N+I D +
Sbjct: 78 QSGLIDRVRRSTVTLEQAEKETI---EFLNKWVDE-GKSPMCG---NSICQDRRFLARQM 130
Query: 107 ----RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
R YRN D+ + Y + PD ++
Sbjct: 131 PQLERFFHYRNL---------------DVSSIKELCYRWRPDILK--------------- 160
Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFE 200
G+E +H A D+ ++ + R+ KL +
Sbjct: 161 -----GVEKTGSHLAMDDIRDSIRELKHYRQHFFKLLD 193
>gi|238753629|ref|ZP_04614991.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
gi|238708181|gb|EEQ00537.1| Ribonuclease T [Yersinia ruckeri ATCC 29473]
Length = 217
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 57/193 (29%), Gaps = 36/193 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + + + T F +P + PEA+ GI P
Sbjct: 23 DVETAGFNAKTDALLEIAAVTLKMDENGWLQRDETLHFHVEPFEGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 83 SNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFVMEAAERACLKRNP 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 143 FHPFATF-----DTAALSGLVLGQTVLAKACLT-----AGIP------------FDSTQA 180
Query: 175 HDAKADVYATLAL 187
H A D T L
Sbjct: 181 HSALYDTEQTAEL 193
>gi|89902537|ref|YP_525008.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
gi|89347274|gb|ABD71477.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
Length = 722
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 40/196 (20%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ ++D ET G + A D Q R+ +KI E F D L +V I G
Sbjct: 531 SYTVFDTETTGLNPAEGDEIIQIGAARIVN--KKILRQESFEQLVNPDRLISAASVQIHG 588
Query: 63 ITPQKALRDG-----VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
IT + + + + +T ++ +N FD + +
Sbjct: 589 ITQDRVIGQPRIGEVLPAFHAFAQ--------DTVLVAHNA-AFDMKFLQ---------- 629
Query: 118 YRWSWDNG-NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
G +LD + P+ S +L+ +A I + H
Sbjct: 630 -LKEAATGLAFHQPVLDTLLLSAVVHPN----------QESHRLEAIAERFNITVLGRHT 678
Query: 177 AKADVYATLAL-VWLI 191
A D T + + LI
Sbjct: 679 ALGDAMVTAEVWLRLI 694
>gi|156346891|ref|XP_001621564.1| hypothetical protein NEMVEDRAFT_v1g248663 [Nematostella vectensis]
gi|156207642|gb|EDO29464.1| predicted protein [Nematostella vectensis]
Length = 460
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 50/214 (23%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V++D ET G D + D Q A + + P D A + GI+
Sbjct: 157 VMFDTETTGLDTSNDDIIQLACASENGD-NL----HSRYMFPRGSI--DLGATRVHGISK 209
Query: 66 Q------------------KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
+ +DG+ E ++HQ S C++ + FD
Sbjct: 210 AFIDGSRVLVKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLLI 269
Query: 108 NIFYR-NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT---SFKLQDL 163
N R N + + + G+ D + V+RA + + + SFK + L
Sbjct: 270 NCLKRHNLMNEFIST---GSVLLDSVKVVRAS-----------KKQEKSPFDSSFKKESL 315
Query: 164 ALAN----GIEHVNAHDAKADVYATLALVWLIRE 193
+ + G+ HDA+AD AL ++ +
Sbjct: 316 SALHGHLFGVPIDRPHDAQADA---CALSKVLMK 346
>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
haemolyticus JCSC1435]
Length = 1438
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V + E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDQIIELAAVKV-KDGEIIDKFERFS---NPHEKLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
+T
Sbjct: 572 EST 574
>gi|239906614|ref|YP_002953355.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
gi|239796480|dbj|BAH75469.1| DNA polymerase III epsilon subunit [Desulfovibrio magneticus RS-1]
Length = 242
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 45/212 (21%), Positives = 72/212 (33%), Gaps = 40/212 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D E G D D A VR+ R + T +P D +P ++ + G+
Sbjct: 46 FVVLDTELTGFDPKRDAIVSVAAVRL-RGLSIMAGETFAALTRPQRD-VPR-QSSLVHGL 102
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSYRW 120
T + +EA R + F P I+G++ ++ F + SR F
Sbjct: 103 TASTLSQAADLEAVLLRLL--DFIGP-AVIVGHHVDLDMGFLNAASRRYFGDELAAP--- 156
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA-----TSFKLQDLALANGI----EH 171
D L + A +G +F L L G+ H
Sbjct: 157 -------CIDTLRLAMAYEEKR-------LSLEGGAGLEHAAFDLPSLCRRYGLPEFAAH 202
Query: 172 VNAHDAKADVYATLALVWLIREKK----PKLF 199
HDA A Y + L + + + P L+
Sbjct: 203 DARHDALAAAYLFVYLAKKLGQGRALTLPDLW 234
>gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum]
Length = 292
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 24/127 (18%)
Query: 1 MTN--HFVIYDYETFGRDV---ALDRPAQFA--GVRVDRQWEKIESTEVFFCKPA----- 48
M+ FV +D ET G R +F VR D I CK
Sbjct: 1 MSEIKTFVFFDLETTGLPKFEENRTRITEFCAVAVRADH----IGLQTAQKCKLPRVQSK 56
Query: 49 ------DDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIR 100
P+A +TG++ + ++ I + + C++ +N
Sbjct: 57 LSLCFNPARAICPQATKLTGLSNELLEHQAHFSSQTLNVIKNWLDVNEKPICLVAHNGNE 116
Query: 101 FDDYYSR 107
FD R
Sbjct: 117 FDFPILR 123
>gi|108759005|ref|YP_633932.1| exonuclease [Myxococcus xanthus DK 1622]
gi|108462885|gb|ABF88070.1| exonuclease [Myxococcus xanthus DK 1622]
Length = 988
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 36/180 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGIT 64
V D ET G D +D + + + + F + P P + +TG+T
Sbjct: 12 VFLDLETTGLDPRVDEVIELGCI-----FFENGREVERFARLYSASRPLPLTIRRLTGLT 66
Query: 65 PQKALRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
A +G + + S T + +N F+ F +
Sbjct: 67 --DADLEGHPRFGTDIAELREKLSGW-TVVA--HNAPFE-----KGFLPDLLGPI----- 111
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+LD ++ P+ S L+ L G+ H A +D A
Sbjct: 112 ----HAPVLDSCELMHYLHPEL----------PSHSLESLLRWGGLALRQPHRAVSDCEA 157
>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
Length = 231
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 66/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S N + +N FD + + + + N+
Sbjct: 55 MVKGSDPIDVVLKQFKEWSGDNILVA--HNASFDMGFINTAYEKVGIE------KAKNAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|290961805|ref|YP_003492987.1| exonuclease [Streptomyces scabiei 87.22]
gi|260651331|emb|CBG74453.1| putative exonuclease [Streptomyces scabiei 87.22]
Length = 233
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 60/194 (30%), Gaps = 26/194 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G DV DR A V D V +P P A + G+T +
Sbjct: 4 FDTETTGVDVETDRIVSAAVVVQDA---PGTRPRVTRWLVNPG-VPVPAGATAVHGLTDE 59
Query: 67 KALRDGVVEAEFSRRIHQFFSVPN----TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ RDG A I + + ++ N FD R
Sbjct: 60 RLQRDGRWPAPVMEEIARALAEQAVRGRPLVV--MNAPFDLTLLDRELRR---------- 107
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ S D + P + G + L DL + AHDA AD
Sbjct: 108 -HRASSLDRWFEATPLRVLDPRVLDKHLDRYRKGRRT--LTDLCAHYEVVLDGAHDAGAD 164
Query: 181 VYATLALVWLIREK 194
A + +V + +
Sbjct: 165 AQAAMDVVRAVGRR 178
>gi|33357113|pdb|1J9A|A Chain A, Oligoribonuclease
Length = 184
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 8 QNLIWIDLEXTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 57
>gi|16273602|ref|NP_439857.1| oligoribonuclease [Haemophilus influenzae Rd KW20]
gi|260581056|ref|ZP_05848878.1| oligoribonuclease [Haemophilus influenzae RdAW]
gi|1176352|sp|P45340|ORN_HAEIN RecName: Full=Oligoribonuclease
gi|1574570|gb|AAC23360.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092296|gb|EEW76237.1| oligoribonuclease [Haemophilus influenzae RdAW]
Length = 182
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|145629185|ref|ZP_01784984.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
gi|145639128|ref|ZP_01794735.1| oligoribonuclease [Haemophilus influenzae PittII]
gi|148827138|ref|YP_001291891.1| oligoribonuclease [Haemophilus influenzae PittGG]
gi|166216262|sp|A5UFF2|ORN_HAEIG RecName: Full=Oligoribonuclease
gi|144978688|gb|EDJ88411.1| oligoribonuclease [Haemophilus influenzae 22.1-21]
gi|145271690|gb|EDK11600.1| oligoribonuclease [Haemophilus influenzae PittII]
gi|148718380|gb|ABQ99507.1| oligoribonuclease [Haemophilus influenzae PittGG]
gi|309750709|gb|ADO80693.1| Oligoribonuclease [Haemophilus influenzae R2866]
Length = 182
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|317507722|ref|ZP_07965427.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
gi|316253975|gb|EFV13340.1| exonuclease [Segniliparus rugosus ATCC BAA-974]
Length = 202
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT--- 61
+ D E G D+ + A + D ++ ++D L +
Sbjct: 8 LLWIDCEMTGLRPGHDQLIEIAALVTDGDLNILDEGIDLVIHASEDKLAQMDEYVTNMHA 67
Query: 62 --GITPQ-KALRDGVVEAEF--SRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
G+T +A + EAE + + F P T I+ N+I D +
Sbjct: 68 SSGLTDAVRAATLSLAEAEAKVLAYVKERFPAPRTAILAGNSIATDRSFL 117
>gi|311697102|gb|ADP99974.1| YacC protein [marine bacterium HP15]
Length = 286
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 61/193 (31%), Gaps = 28/193 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + + D ET G D + + A D Q + T K DPEA +
Sbjct: 104 LDENPLFLDTETTGLD-DQAQIIELA--ISDAQGTILLET-----KLRPSVSIDPEAEDV 155
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G+T + E S ++ + I N FD R + + W
Sbjct: 156 HGLTIEFLANAPTWP-EVSDQVRKILCGRALVIF---NADFDTRMFRQT-AAAYGEPVEW 210
Query: 121 --SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ + A AF P+ G+ S + A AH A
Sbjct: 211 VSELKTHCAMY------LAADAFG------PTNRHGSISLA-DAVDFAGVTWRGAAHGAV 257
Query: 179 ADVYATLALVWLI 191
AD AT+ LV I
Sbjct: 258 ADTLATVDLVQAI 270
>gi|302557603|ref|ZP_07309945.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
gi|302475221|gb|EFL38314.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
Length = 240
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET G D R A + V AD +P PE AV + GI+ +
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRA-----GEPLGRREWLADPGVPIPEDAVAVHGISGE 65
Query: 67 KALRDGVVEAEFSRRIHQFFSV-PNTC--IIGYNNIRFDDYYSRNIFYRNFYDSY 118
+A +G + + I + T ++ YN FD R S
Sbjct: 66 RAAAEGRPADQVADAIAGVLTAYWQTGVPVVAYNA-AFDLTLLSAELRRYGLPSL 119
>gi|167854572|ref|ZP_02477353.1| oligoribonuclease [Haemophilus parasuis 29755]
gi|167854327|gb|EDS25560.1| oligoribonuclease [Haemophilus parasuis 29755]
Length = 183
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V D+ L
Sbjct: 7 QNLIWIDLEMTGLDPEKERIIEIATIITDKDLNILAEGPVLAVHQPDELL 56
>gi|260582817|ref|ZP_05850603.1| oligoribonuclease [Haemophilus influenzae NT127]
gi|260094143|gb|EEW78045.1| oligoribonuclease [Haemophilus influenzae NT127]
Length = 182
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
Length = 1513
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 32/189 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ + +V++D ET G D+ + V+V+ +I F P +P P +
Sbjct: 466 LDDTYVVFDLETTGFSPIKDKIIEIGAVKVEHG--EITDKFSTFVNPK---VPIPFQITQ 520
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-YRNFYDSY 118
+T IT Q + G + E F + +N FD + Y++ +
Sbjct: 521 LTSITDQMVI--GAPDIETVLPQFLEFIGDAALVA--HNASFDVSFIEQNCRYQDIQPDF 576
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+D + P + +KL +A A I N H A
Sbjct: 577 TS-----------VDTVAMARILLPTLSK----------YKLNVVANALHISLENHHRAV 615
Query: 179 ADVYATLAL 187
D AT +
Sbjct: 616 DDAGATAEI 624
>gi|28899597|ref|NP_799202.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
gi|153840401|ref|ZP_01993068.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
gi|260876662|ref|ZP_05889017.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
gi|260902310|ref|ZP_05910705.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
gi|31076785|sp|Q87L01|ORN_VIBPA RecName: Full=Oligoribonuclease
gi|28807833|dbj|BAC61086.1| oligoribonuclease [Vibrio parahaemolyticus RIMD 2210633]
gi|149745937|gb|EDM57067.1| oligoribonuclease [Vibrio parahaemolyticus AQ3810]
gi|308093946|gb|EFO43641.1| oligoribonuclease [Vibrio parahaemolyticus AN-5034]
gi|308110954|gb|EFO48494.1| oligoribonuclease [Vibrio parahaemolyticus AQ4037]
Length = 181
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 60/208 (28%), Gaps = 44/208 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D + + E K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIF 110
A +G+ ++ + E + + +F + G N+I D R
Sbjct: 66 HTA---SGL-VERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICG-NSIGQD----RRFL 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
Y++ + + D+ + + P+ + G
Sbjct: 117 YKHM--PELEEYFHY-RYLDVSTLKELTRRWKPEVLD--------------------GFS 153
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
H A D+ ++A + RE K+
Sbjct: 154 KQGTHLALDDIRESIAELKYYRETIFKI 181
>gi|256821737|ref|YP_003145700.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis
DSM 16069]
gi|256795276|gb|ACV25932.1| Exonuclease RNase T and DNA polymerase III [Kangiella koreensis
DSM 16069]
Length = 182
Score = 46.7 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ + D E G D D + A + D+ +E V +D+ L
Sbjct: 6 DNLIWVDLEMTGLDPETDVVIEIATIVTDKDLNILEEGPVIAIHQSDEVL 55
>gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M04-240196]
Length = 244
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
961-5945]
gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136]
Length = 244
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|295135069|ref|YP_003585745.1| exonuclease family protein [Zunongwangia profunda SM-A87]
gi|294983084|gb|ADF53549.1| exonuclease family protein [Zunongwangia profunda SM-A87]
Length = 457
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 28/193 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G + + A + D + + ++ + P V +TGI
Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGE-KVVDQFISL---INPERPIQPFVVGLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ LR+ E ++RI + + CII +N +FD R F R + +
Sbjct: 58 -NEMLRNAPKFYEVAKRIVEITTD---CIIVAHNAKFDYRILRTEFKRLGF-----EFQR 108
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+ + PD S+ L L A GI + H A D AT
Sbjct: 109 KSLC-----TVELSKKLIPD----------MPSYSLGKLVRALGIPLSDRHRANGDAQAT 153
Query: 185 LALVWLIREKKPK 197
+ L ++ K K
Sbjct: 154 VKLFKMLLAKDTK 166
>gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275]
gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M01-240013]
Length = 244
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153]
Length = 244
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|218768496|ref|YP_002343008.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
gi|254805280|ref|YP_003083501.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha14]
gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha14]
gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE
2594]
gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
Length = 244
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDVA-LDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
MT +I D ET G DR +FAG+ D+ + P D +P
Sbjct: 1 MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLH-------LYVHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F I +N +FD + F R
Sbjct: 53 E-EAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELII---HNAKFDVGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
+ + G + D L + R
Sbjct: 109 MGLPTVE---ELGCTVTDTLAMAR 129
>gi|68250317|ref|YP_249429.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
gi|148825742|ref|YP_001290495.1| oligoribonuclease [Haemophilus influenzae PittEE]
gi|81335262|sp|Q4QJM8|ORN_HAEI8 RecName: Full=Oligoribonuclease
gi|166216261|sp|A5UBG1|ORN_HAEIE RecName: Full=Oligoribonuclease
gi|68058516|gb|AAX88769.1| oligoribonuclease [Haemophilus influenzae 86-028NP]
gi|148715902|gb|ABQ98112.1| oligoribonuclease [Haemophilus influenzae PittEE]
Length = 182
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|299140892|ref|ZP_07034030.1| exonuclease [Prevotella oris C735]
gi|298577858|gb|EFI49726.1| exonuclease [Prevotella oris C735]
Length = 286
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGI 63
V++D ET G D+ DR Q + ++V E+ + K D + D +TGI
Sbjct: 9 LVVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDHLINPGKHIPDMVSD-----LTGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ ++D + S + + F G+N+ RFD F R D
Sbjct: 64 D-DEKVKDAPSFKQLSATLAEKF--KGCDFAGFNSNRFDVPMLAEEFLRAGID 113
>gi|262067765|ref|ZP_06027377.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
gi|291378491|gb|EFE86009.1| putative exonuclease [Fusobacterium periodonticum ATCC 33693]
Length = 191
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
N + D ET G + Q +G +R+D+ + +E F+ KP + + +A+ +
Sbjct: 2 NKIIFIDTETGGVNPEKATLIQLSGIIRIDK--KDVEKF-NFYIKPFKNSEVNEKALEVQ 58
Query: 62 GITPQKALRDGVVE-----AEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYSRNIFYR 112
G T ++ D VE +F + ++ + + GYN +RFD + F R
Sbjct: 59 GRTLEELKTDKYVEEKEVYKQFINLLDKYIDKYDRTDKFIVAGYN-VRFDVDILKAFFQR 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ +++ +S+ + +LD + +I I P ++ KL+ GIE +
Sbjct: 118 HG-NNFLFSYLDS----SMLDPLYSIRLLQIAEI-LPVLENN----KLETWCKHFGIE-L 166
Query: 173 NAHDAKADVYATLAL-VWLI 191
AHD+ ++ AT L LI
Sbjct: 167 KAHDSLENIEATKKLIGKLI 186
>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
29176]
gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC
29176]
Length = 1517
Score = 46.3 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 53/227 (23%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
+ + ++++D ET G D+ + V+V E ++ F P P
Sbjct: 477 LDDTYIVFDIETTGFSAIRDKIIEIGAVKV-VNGEIVDRFSTF-------VNPQRPIPFE 528
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIF-YRN 113
IT +T + V+EA+ + F +G N FD + Y+
Sbjct: 529 ITNLT--SITDEMVLEADPIENVLPQFLE----FVGDGVLVAHNASFDVGFIEQNCRYQE 582
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + +D + P + +KL +A GI N
Sbjct: 583 IEYRFTY-----------VDTVAMARVLLPTLSK----------YKLNLVAKTLGISLEN 621
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
H A D AT + F + K+ + L I
Sbjct: 622 HHRAVDDAGATAEI-----------FVKFVEMLKKDHITDLKGINRF 657
>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
Length = 231
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD + + + N+
Sbjct: 55 MVKGSDPIDVVLQRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------KAENAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum BKT015925]
Length = 1443
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 32/186 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVF 59
+ + FV++D ET G A D+ + V++ + I+S F + +P
Sbjct: 426 INDTFVVFDLETTGFSSAYDKIIEIGAVKI-KNGNIIDSFSTF---VNPEIKVPY----N 477
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
IT +T D V A+ I F ++ +N FD + R D
Sbjct: 478 ITELT--SITNDDVKNADTIDSILPKFIEFCGDSVLVAHNANFDMSFIRKNCNDLNIDIN 535
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++D + P+ +KL +A G+ N H A
Sbjct: 536 YT----------VMDTVPLAKFLFPEL----------KRYKLNTIAKHLGVSLENHHRAV 575
Query: 179 ADVYAT 184
D AT
Sbjct: 576 DDAKAT 581
>gi|319776026|ref|YP_004138514.1| oligoribonuclease [Haemophilus influenzae F3047]
gi|317450617|emb|CBY86837.1| oligoribonuclease [Haemophilus influenzae F3047]
Length = 182
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
P7]
gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
P7]
Length = 862
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 75/189 (39%), Gaps = 39/189 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-----CKPADDYLPDPEA 57
++ +++D E+ G DV D Q A ++V++ + E E F K ++
Sbjct: 495 DNIIVFDVESTGVDVTEDEIIQIAAIKVNKNGQVTEKFERFLKNNKSVKNSEH------- 547
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ G + + ++G + + + F ++ I+G+N +++D + R
Sbjct: 548 --VHGFSDEFLKKNGEDK----NTVLKEFVKFSEDSVIVGHN-VQYDINILTSELQRAGL 600
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ +D LD+ F P+ + KL+ L+ E+ +H
Sbjct: 601 GE-----PKFKAFYDTLDI---YRRFHPNL----------RNHKLETLSHIFETENKPSH 642
Query: 176 DAKADVYAT 184
DA D+ AT
Sbjct: 643 DAMDDIQAT 651
>gi|55978361|ref|YP_145417.1| hypothetical protein TTHB178 [Thermus thermophilus HB8]
gi|55773534|dbj|BAD71974.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 296
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 24/180 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E D + + A V D + +P PD E +TGI ++
Sbjct: 12 DLEATSTDPSEAEVLEVAAV--DGEGRVFHRYLATQ-RPLP---PDHEVFQLTGIPYEEY 65
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
V E + F ++G+N +R+D + W
Sbjct: 66 EAKKVAPKEALEELLAFLGGRP--LLGHNLLRYDLPLLQRHLEEAGLP----RWQG---- 115
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVYATLAL 187
+ LD +R + +P+ G ++L DL A G AH A D ATLA+
Sbjct: 116 -EALDTLRLAHLL------FPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAV 168
>gi|52425567|ref|YP_088704.1| oligoribonuclease [Mannheimia succiniciproducens MBEL55E]
gi|59798011|sp|Q65SE1|ORN_MANSM RecName: Full=Oligoribonuclease
gi|52307619|gb|AAU38119.1| Orn protein [Mannheimia succiniciproducens MBEL55E]
Length = 186
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 5 NQNLIWIDLEMTGLDPENERIIEIATIVTDKDLNILAEGPVLAVHQSDELL 55
>gi|325921805|ref|ZP_08183622.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
ATCC 19865]
gi|325547682|gb|EGD18719.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas gardneri
ATCC 19865]
Length = 212
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 64/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
+ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 26 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLEKL----EAMDE 81
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ L V A+ + F S C N+I D
Sbjct: 82 WNRNQHRRSGLW-QRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCG---NSICQD---- 133
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P +A
Sbjct: 134 RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP--------------------TVA 170
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 171 NGFAKSSAHTALSDVRDSIDELRHYRQ 197
>gi|311695397|gb|ADP98270.1| oligoribonuclease [marine bacterium HP15]
Length = 180
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+N V D E G D +R + A + D + +
Sbjct: 4 SNRLVWIDLEMTGLDPEKERIIEMATIITDSELNIVAE 41
>gi|302338443|ref|YP_003803649.1| DNA polymerase III subunit epsilon [Spirochaeta smaragdinae DSM
11293]
gi|301635628|gb|ADK81055.1| DNA polymerase III, epsilon subunit [Spirochaeta smaragdinae DSM
11293]
Length = 210
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 60/188 (31%), Gaps = 49/188 (26%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
FV +D+ET G D DR + V + + + + P P +
Sbjct: 25 FVSFDFETTGLDSFRDRILEIGAVSWRQGKTKETFSSLVRPGI----PVP-----PASTA 75
Query: 60 ITGITPQKAL----RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ GIT L G + F R I +V + N+ FD F +
Sbjct: 76 VHGITDDDLLDAPDEKGAL-VSFLRFIEGKVAVAH-------NLPFD-----YGFLESSV 122
Query: 116 DSYRWSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
D G S D +D + P G S+ L +L + +
Sbjct: 123 DRL------GLSLGDTLFIDTLTLSRRVYP----------GLPSYALGNLITFLNLFQED 166
Query: 174 AHDAKADV 181
AH A +D
Sbjct: 167 AHRALSDA 174
>gi|291540867|emb|CBL13978.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis XB6B4]
Length = 235
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 36/194 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+ D E G + D + VRV R + ++ C+ + +P+ + +TGIT
Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ--NVKIPE-KVTELTGIT 59
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR----NFYDSYRW 120
+A+ G +E E + R F + I+G N I FD F + N
Sbjct: 60 --EAMVQGGMEKEEAMRQFFEFIGED-IIVGQNVI-FD-----YGFLKQWAVNHNMPLER 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ +D ++ F P + D L+ L G++ NAH A D
Sbjct: 111 N---------AVDTLKLARKFLPK----EQKKD------LESLCACFGVKRENAHRAFDD 151
Query: 181 VYATLALVWLIREK 194
Y T + +RE+
Sbjct: 152 AYETWQVYEALRER 165
>gi|269964116|ref|ZP_06178417.1| oligoribonuclease [Vibrio harveyi 1DA3]
gi|269831150|gb|EEZ85308.1| oligoribonuclease [Vibrio harveyi 1DA3]
Length = 181
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 60/208 (28%), Gaps = 44/208 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D + + E K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIF 110
A +G+ ++ + E + + +F + G N+I D R
Sbjct: 66 HTA---SGL-VERVQNSQISEQDAVAQTIEFLEKWVPKGVSPICG-NSIGQD----RRFL 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
Y++ + + D+ + + P+ + G
Sbjct: 117 YKHM--PELEEYFHY-RYLDVSTLKELTRRWKPEVLD--------------------GFS 153
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
H A D+ ++A + RE K+
Sbjct: 154 KQGTHLALDDIRESIAELKYYRETIFKI 181
>gi|83648050|ref|YP_436485.1| oligoribonuclease [Hahella chejuensis KCTC 2396]
gi|123531236|sp|Q2SBB4|ORN_HAHCH RecName: Full=Oligoribonuclease
gi|83636093|gb|ABC32060.1| Oligoribonuclease (3'->5' exoribonuclease) [Hahella chejuensis KCTC
2396]
Length = 182
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 50/206 (24%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
++ + D E G D DR + A V E + V D L A+
Sbjct: 5 DNLIWIDLEMTGLDPDSDRIIEMAVVVTTSNLELVAEGPVIAVHQPDSVL----ALMDDW 60
Query: 60 ---ITGITPQKALRDGVV--EAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRN 108
G + G EA+ ++I F + C N+I D R
Sbjct: 61 NRNTHGASGLTGRVKGSTIGEADAEKQILDFLAQHVDAGCSPMCG---NSIGQD----RR 113
Query: 109 IFYRNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
R D + + N D+ + + P+ +A
Sbjct: 114 FLARYMKDLEKFFHYRN----LDVSTLKELARRWRPE--------------------VAA 149
Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
GI+ +H A D+ ++ + RE
Sbjct: 150 GIKKKGSHQALEDIRESVEELRYYRE 175
>gi|297194325|ref|ZP_06911723.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297152225|gb|EFH31608.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 658
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 55/182 (30%), Gaps = 30/182 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A V V + DP V + G+T ++
Sbjct: 24 DVETSGLVARRDRVLSVAVVTVGPDGAQTGEFSTL---LDPGC--DPGPVHVHGLTAERL 78
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SYRWSWDNGNS 127
E E ++RI Q ++ +N +FD + + F R
Sbjct: 79 HGAPAFE-EVAQRISQML--EGRVLVAHNA-QFDYDFLAHEFARAGVSLPVAR------- 127
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
+ D P D +L LA G+ + AHDA D +
Sbjct: 128 -----RLCTLALNRRVD----PPTQD----LRLGTLAAHYGVPQLRAHDALDDTRVLAGV 174
Query: 188 VW 189
+
Sbjct: 175 LR 176
>gi|254442129|ref|ZP_05055605.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
gi|198256437|gb|EDY80745.1| exonuclease superfamily [Verrucomicrobiae bacterium DG1235]
Length = 193
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 20/115 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP---------DP 55
+ D E G D A DR + A + ++Q E + E + + L
Sbjct: 6 YCWIDLEMTGLDPATDRIVEAAVIITNKQLEPVFEWES-AVRQPQEVLEGMNDWCKHHHA 64
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQF----FSVPNTCIIGYNNIRFDDYYS 106
E+ + I +DG+ E E ++ + F N C+I N+I D +
Sbjct: 65 ESGLLDRI------QDGITEEELDDKLAEITLKYFKKNNPCVIAGNSIAQDRKFI 113
>gi|153802855|ref|ZP_01957441.1| oligoribonuclease [Vibrio cholerae MZO-3]
gi|124121610|gb|EAY40353.1| oligoribonuclease [Vibrio cholerae MZO-3]
Length = 156
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + V E E + F C N+I D R Y+
Sbjct: 66 HTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|291535622|emb|CBL08734.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
intestinalis M50/1]
Length = 235
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 36/194 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+ D E G + D + VRV R + ++ C+ + +P+ + +TGIT
Sbjct: 4 YVVIDLEMTGLNAKTDHILEVGAVRV-RNHQAVDKFGAILCQ--NVKIPE-KVTELTGIT 59
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR----NFYDSYRW 120
+A+ G +E E + R F + I+G N I FD F + N
Sbjct: 60 --EAMVQGGMEKEEAMRQFFEFIGED-IIVGQNVI-FD-----YGFLKQWAVNHNMPLER 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ +D ++ F P + D L+ L G++ NAH A D
Sbjct: 111 N---------AVDTLKLARKFLPK----EQKKD------LESLCACFGVKRENAHRAFDD 151
Query: 181 VYATLALVWLIREK 194
Y T + +RE+
Sbjct: 152 AYETWQVYEALRER 165
>gi|293392189|ref|ZP_06636523.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290952723|gb|EFE02842.1| oligoribonuclease [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 182
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V D+ L
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAIHQPDELL 55
>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
haemolysans ATCC 10379]
gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
haemolysans ATCC 10379]
Length = 1449
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 30/186 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + A V+V + +I+S E + P P + IT +
Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGAEIDSFES-YINPQR-----PISELITRL 480
Query: 64 TPQ--KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T ++D +E E + + + + +N +FD + F R ++
Sbjct: 481 TSITNDDVKDAPLEKEVMTNFYNWLDKDDILVA--HNAKFDLGFLDTCFERLGLEN---- 534
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N+ D L V RA + L +LA + V H A D
Sbjct: 535 --KNNASIDTLFVSRA------------ENKEAKRH-GLSNLAKLYKVRLVQHHRAIYDT 579
Query: 182 YATLAL 187
AT +
Sbjct: 580 KATAEI 585
>gi|229821534|ref|YP_002883060.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
DSM 12333]
gi|229567447|gb|ACQ81298.1| Exonuclease RNase T and DNA polymerase III [Beutenbergia cavernae
DSM 12333]
Length = 283
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 20/210 (9%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGITPQ 66
+D ET G DVA DR A + V + + + P + PEA I G+T +
Sbjct: 15 FDTETTGVDVAHDRIVT-AALVVRHGLQGLPQERTWIIDPGVEI---PEAASAIHGVTTE 70
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYN--NIRFDDYYSRNIFYRNFYDSY-RWSWD 123
A R G AE I + N +D + R+ +
Sbjct: 71 HARRLGRPPAEALEEIAAALAAAIADGAAVVAFNASYDLTILEHELVRHHLPTLHERLGR 130
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++ D L + RA+ F P G KL DLA G+ H A DV A
Sbjct: 131 RPDAVLDPLVLDRALDRFRP----------GKR--KLVDLAALYGVSTGELHAADVDVTA 178
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
TL ++ + + P+L E + Q+R
Sbjct: 179 TLDVLRALVGRFPELAEVPLPQMHARQIRA 208
>gi|299821667|ref|ZP_07053555.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
gi|299817332|gb|EFI84568.1| ATP-dependent DNA helicase [Listeria grayi DSM 20601]
Length = 929
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 60/183 (32%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRD-VALDRPAQFAGVRVDRQ--WEKIESTEVFFCKPADDYLPDPEAVFIT 61
+++ D ET G DR QFA V+ E + + +P P +T
Sbjct: 8 YLVVDLETTGNQANRHDRIIQFAATLVEGSKRLETYSTFIN-----PEREIP-PFIQQLT 61
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI P + + + I CI +N+ FD + R Y +
Sbjct: 62 GIKPSDCYDAPIF-TDVAPIIQNLLED---CIFVAHNVSFDWTFLAREMQRAGY-PLPKT 116
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
LD + P G S+KLQDL+ + H H A +D
Sbjct: 117 KK--------LDTVELARIIYP----------GIDSYKLQDLSDEFKLGHDRPHQADSDA 158
Query: 182 YAT 184
T
Sbjct: 159 EVT 161
>gi|319440229|ref|ZP_07989385.1| putative exonuclease [Corynebacterium variabile DSM 44702]
Length = 186
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 40/187 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF------CKPADDYLPDPEAVFITG 62
D ET G D DR + A +RV F +P ++ +TG
Sbjct: 25 DCETTGLDPDSDRIIEVAALRVRE-----GRPVALFHRVVDPGRPLPGFITS-----LTG 74
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+T Q+ + I S + ++G+N + FD +
Sbjct: 75 LTDQQVRQAPP-----VGDILGDLSAFLAHDTVVGHN-VGFDLAFIDAEITTTHSTPRAA 128
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
S L + A P G ++L LA A ++H +H +D
Sbjct: 129 SLS--------LCTAESARAL------VPRSRVGR--YRLNTLAEAFDLDHRPSHRTVSD 172
Query: 181 VYATLAL 187
V ATL L
Sbjct: 173 VLATLDL 179
>gi|288959104|ref|YP_003449445.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
sp. B510]
gi|288911412|dbj|BAI72901.1| gram-positive type DNA polymerase III subunit alpha [Azospirillum
sp. B510]
Length = 702
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 4 HFVIYDYETFGRDV-ALDRPAQFAGVR-------VDRQWEKIESTEVFFCKPADDYLPDP 55
H+V++D ET G A D Q A VR + + + +P P
Sbjct: 508 HYVVFDTETTGLSPSAGDEIVQIAAVRIVGGRILTGETFNMLVDPK----RPIP-----P 558
Query: 56 EAVFITGIT 64
E++ GIT
Sbjct: 559 ESIPFHGIT 567
>gi|86142317|ref|ZP_01060827.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
blandensis MED217]
gi|85831069|gb|EAQ49526.1| putative DNA polymerase III epsilon chain [Leeuwenhoekiella
blandensis MED217]
Length = 257
Score = 46.3 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVF 59
+T +D ET G +VA DR + + ++V E + P +P PE
Sbjct: 5 LTRPICFFDLETTGINVAKDRIVEISVLKVLP--NGKEEKHTWLVNPT---IPIPPETTA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-----DYYSR 107
+ GI + + E + IH + + G+N+ RFD + R
Sbjct: 60 VHGIKDEDVADKPTFK-ELANEIHNLIKDSD--LAGFNSNRFDIPLLAEEMLR 109
>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
subunit, Gram-positive type [Enterococcus faecium DO]
gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E1162]
gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
subunit, Gram-positive type [Enterococcus faecium DO]
gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
faecium E1162]
gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
Length = 1452
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 478
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + G E R+ FS +T ++ +N FD + + R
Sbjct: 479 TGIT--DGMVRGSKSEEEVLRMFLEFSK-DTILVAHNA-AFDMGFLNTSYARYGIPEAA- 533
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 534 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 575
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 576 AEATGHLAWIF 586
>gi|315634034|ref|ZP_07889323.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
gi|315477284|gb|EFU68027.1| oligoribonuclease [Aggregatibacter segnis ATCC 33393]
Length = 182
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D +R + A + D+ +
Sbjct: 6 QNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAE 42
>gi|321470748|gb|EFX81723.1| hypothetical protein DAPPUDRAFT_92597 [Daphnia pulex]
Length = 185
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 25/120 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPD------- 54
N V D E G D D + A + D+ + + +P D + D
Sbjct: 10 NRIVWMDLEMTGLDETKDYILEAACLITDQDLNIVAEGPNIIINQP--DSILDGMGEWCK 67
Query: 55 --------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
EA + I+ ++A V +F R ++ P C + N+I D +
Sbjct: 68 KTHGESGLTEACRNSNISVEEAQEQLV---DFIGR----YTNPGECPLAGNSIGEDKRFL 120
>gi|322497434|emb|CBZ32508.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 1430
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 20/190 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V +D ET G + + D + A ++ IE+ F P V I IT
Sbjct: 765 IVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRSITPRTVGIHHIT 817
Query: 65 PQKALRDGVVEAEFSRRIHQFF----SVPNT----CIIGYNNIRFDDYYSRNIFYRNFYD 116
V+ ++ I Q+ + N ++G+N D+ R
Sbjct: 818 NAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRAL-ECHAP 875
Query: 117 SYRWSWDNGNSRWDLLDVMR--AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVN 173
+ LL+ R + P D A+S +L L A + +
Sbjct: 876 ECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPEGD 935
Query: 174 AHDAKADVYA 183
H A D A
Sbjct: 936 LHRADTDTKA 945
>gi|146080581|ref|XP_001464035.1| mitochondrial DNA polymerase I protein B [Leishmania infantum
JPCM5]
gi|134068125|emb|CAM66410.1| putative mitochondrial DNA polymerase I protein B [Leishmania
infantum JPCM5]
Length = 1430
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 20/190 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V +D ET G + + D + A ++ IE+ F P V I IT
Sbjct: 765 IVFFDIETTGLNPSTDAIVEVAM------FDPIEN-STFHTLVNPQRSITPRTVGIHHIT 817
Query: 65 PQKALRDGVVEAEFSRRIHQFF----SVPNT----CIIGYNNIRFDDYYSRNIFYRNFYD 116
V+ ++ I Q+ + N ++G+N D+ R
Sbjct: 818 NAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRAL-ECHAP 875
Query: 117 SYRWSWDNGNSRWDLLDVMR--AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVN 173
+ LL+ R + P D A+S +L L A + +
Sbjct: 876 ECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSRLITALNVRPEGD 935
Query: 174 AHDAKADVYA 183
H A D A
Sbjct: 936 LHRADTDTKA 945
>gi|329120336|ref|ZP_08249004.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
gi|327462677|gb|EGF09000.1| oligoribonuclease [Neisseria bacilliformis ATCC BAA-1200]
Length = 184
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 42/208 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
N+ D E G DR + A + D + + V+ +D+ L +
Sbjct: 6 ANNLCWLDMEMTGLSPETDRIIEVAVIITDSDLNVLAQSPVYAVHQSDEVLDAMDEWCTA 65
Query: 61 ----TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIF 110
TG+T Q+ EAE + + F + C N++ D F
Sbjct: 66 THGRTGLT-QRVRESQYTEAEVEQNLLDFIAAWIPAQASPMCG---NSVHQD-----RRF 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+ + + N D+ + K + A+A G+
Sbjct: 117 MQKYMPRLEAYFHYRN--LDVSTLKELA--------------------KRWNPAVAKGVV 154
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
+H A D+ ++ + R+ KL
Sbjct: 155 KRGSHKALDDILESIEEMRYYRDHFLKL 182
>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A3 str. Loch Maree]
Length = 1432
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 42/189 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSNKNDKIIEIGAVKIEKG-KIVDRFSEFVNPGRSIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFY 115
T IT E +I F IG + N FD +
Sbjct: 470 TSITDDMVQDK-----ETIDKILPRFID----FIGDSVVVAHNAAFDVSFINKNC----- 515
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ ++N ++D + P+ +KL +A GI N H
Sbjct: 516 KDLKIEFENS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHH 560
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 561 RAVDDAKAT 569
>gi|118496683|ref|YP_897733.1| oligoribonuclease [Francisella tularensis subsp. novicida U112]
gi|194323992|ref|ZP_03057767.1| exonuclease family protein [Francisella tularensis subsp. novicida
FTE]
gi|208780043|ref|ZP_03247386.1| exonuclease family protein [Francisella novicida FTG]
gi|166216259|sp|A0Q414|ORN_FRATN RecName: Full=Oligoribonuclease
gi|118422589|gb|ABK88979.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella novicida
U112]
gi|194321889|gb|EDX19372.1| exonuclease family protein [Francisella tularensis subsp. novicida
FTE]
gi|208744047|gb|EDZ90348.1| exonuclease family protein [Francisella novicida FTG]
Length = 178
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 36/200 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
++ + D E G DV + + A + D+ I E +D+ L I
Sbjct: 4 ADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIHQSDEILNSMNEWCIK 63
Query: 61 ----TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
TG+T Q+ + ++I + R +
Sbjct: 64 VHCETGLT-QRVKDSKISTEAAEQQIL--------------------EFIRK------FV 96
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL--QDLALANGIEHVNA 174
Y+ S GNS W A Y D D T+ KL Q G E N
Sbjct: 97 PYQSSPLCGNSIWQDRR-FLAKYMPKIDEYCHYRMLD-VTTLKLLNQYWGDGKGFEKKNT 154
Query: 175 HDAKADVYATLALVWLIREK 194
H A D+ ++A + R+K
Sbjct: 155 HKALDDIRESIAELKFYRQK 174
>gi|114564478|ref|YP_751992.1| oligoribonuclease [Shewanella frigidimarina NCIMB 400]
gi|122298754|sp|Q07XW1|ORN_SHEFN RecName: Full=Oligoribonuclease
gi|114335771|gb|ABI73153.1| Exonuclease, RNase T and DNA polymerase III [Shewanella
frigidimarina NCIMB 400]
Length = 181
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G + +DR + A + D++ I V D+ L
Sbjct: 5 ANNLIWVDLEMTGLEPDVDRVIEIATLVTDQELNIIAQGPVLAIYQTDEVL 55
>gi|70734062|ref|YP_257702.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
gi|85542915|sp|Q4KJ81|ORN_PSEF5 RecName: Full=Oligoribonuclease
gi|68348361|gb|AAY95967.1| oligoribonuclease [Pseudomonas fluorescens Pf-5]
Length = 180
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 17/51 (33%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + D + A + D + V +D+ L
Sbjct: 4 PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHQSDEIL 54
>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
Length = 1436
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 30/193 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ E I+ E F + + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKMKEG-EIIDRFERFA---NPHHPLSATTIELTGI 475
Query: 64 TPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T + E +E R H++ I+ +N FD + + +
Sbjct: 476 TDD--MVQNAPEISEVLRDFHEWMGDS---ILVAHNASFDMGFLNMGLQKIGLEKAA--- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NG ++D + P + +L LA IE V H A D
Sbjct: 528 -NG-----VIDTLELGRFLYPH----------MKNHRLNTLAKKFDIELVQHHRAIYDAE 571
Query: 183 AT-LALVWLIREK 194
T L ++++
Sbjct: 572 TTGYLLNKMLKDA 584
>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
Length = 1436
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 30/193 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ E I+ E F + + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKMKEG-EIIDRFERFA---NPHHPLSATTIELTGI 475
Query: 64 TPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T + E +E R H++ I+ +N FD + + +
Sbjct: 476 TDD--MVQNAPEISEVLRDFHEWMGDS---ILVAHNASFDMGFLNMGLQKIGLEKAA--- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
NG ++D + P + +L LA IE V H A D
Sbjct: 528 -NG-----VIDTLELGRFLYPH----------MKNHRLNTLAKKFDIELVQHHRAIYDAE 571
Query: 183 AT-LALVWLIREK 194
T L ++++
Sbjct: 572 TTGYLLNKMLKDA 584
>gi|311068754|ref|YP_003973677.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus atrophaeus 1942]
gi|310869271|gb|ADP32746.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus atrophaeus 1942]
Length = 930
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
FV+ D ET G D+ Q A V ++ +I + P P + +TG
Sbjct: 6 FVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNKSI---PFFIEQLTG 60
Query: 63 ITPQKALRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ + E + + Q + +N I FD + + +
Sbjct: 61 IT--NSMVENEQPFEAVAEEVFQLLD--GAYFVAHN-IHFDLGFVKYELNEAGFRLPDCE 115
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+LD + P G +KL +L+ ++H N H A +D
Sbjct: 116 ---------VLDTVELSRIVYP----------GFEGYKLTELSEELQLKHENPHRADSDA 156
Query: 182 YAT 184
T
Sbjct: 157 EVT 159
>gi|304311523|ref|YP_003811121.1| Oligoribonuclease [gamma proteobacterium HdN1]
gi|301797256|emb|CBL45476.1| Oligoribonuclease [gamma proteobacterium HdN1]
Length = 184
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
MT+ + + D E G D DR + A V ++ E + VF D+ L
Sbjct: 1 MTDRKTNLIWIDLEMTGLDPDQDRIIEIATVITNKDLEILAEGPVFAVHQPDEIL 55
>gi|296110415|ref|YP_003620796.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
gi|295831946|gb|ADG39827.1| ATP-dependent helicase DinG [Leuconostoc kimchii IMSNU 11154]
Length = 801
Score = 46.3 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 44/206 (21%)
Query: 2 TNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQW----EKIESTEVFFCKPADDYLPDPE 56
FV+ D ET G+ VA R Q + + ++ E F +P
Sbjct: 4 NETFVVVDLETTGQSVAKGGRIIQIG-----MTFIKQRKIVDHFESFV---------NPG 49
Query: 57 AVFITGIT----PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ I + E + Q I +NI FD Y + F R
Sbjct: 50 QLIARNIQQLTHISQKEVKNAPYFEEIAPLLQNLLKDAVIIA--HNINFDYPYLNDEFVR 107
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ NS +D ++ P ++L DL I
Sbjct: 108 TGF-------QKLNSAA--IDTVQLAQILLPTA----------PGYRLLDLTTYLDITLN 148
Query: 173 NAHDAKADVYATLALVWLIREKKPKL 198
NAH A AD +AT L + ++ +L
Sbjct: 149 NAHRANADAHATALLFLKLWQRAEQL 174
>gi|327313528|ref|YP_004328965.1| exonuclease [Prevotella denticola F0289]
gi|326944167|gb|AEA20052.1| exonuclease [Prevotella denticola F0289]
Length = 284
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+T V++D ET G D+ DR Q + ++V ++ E F P P P E
Sbjct: 5 LTKPLVVFDLETTGLDLVNDRIIQISFIKVLPDGKE--ERENIFINPEK---PIPTEVTQ 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ + D + ++ + F+ G+N+ RFD F R D
Sbjct: 60 LTGISHKDV-ADAPTFRQKAKELADRFA--GCDFAGFNSNRFDVPMLAEEFLRAGVD 113
>gi|254468761|ref|ZP_05082167.1| oligoribonuclease [beta proteobacterium KB13]
gi|207087571|gb|EDZ64854.1| oligoribonuclease [beta proteobacterium KB13]
Length = 184
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G + D+ + A + D E I V+ K +++ L
Sbjct: 5 NNNLIWIDMEMTGLNPVTDKIIEVAVIVTDPHLEIIAEAPVYVIKQSNELL 55
>gi|21242783|ref|NP_642365.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
gi|23821917|sp|Q8PKW8|ORN_XANAC RecName: Full=Oligoribonuclease
gi|21108265|gb|AAM36901.1| oligoribonuclease [Xanthomonas axonopodis pv. citri str. 306]
Length = 194
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
+ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETL----EAMDE 63
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ + V A+ + F S C N+I D
Sbjct: 64 WNRNQHRRSGLW-QRVIDSQVTHAQAEAQTVAFLSEWIRAGASPMCG---NSICQD---- 115
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P +A
Sbjct: 116 RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP--------------------TVA 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 153 NGFAKSSAHTALSDVRDSIDELRHYRQ 179
>gi|160891921|ref|ZP_02072924.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
gi|270296413|ref|ZP_06202613.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317480391|ref|ZP_07939491.1| exonuclease [Bacteroides sp. 4_1_36]
gi|156858399|gb|EDO51830.1| hypothetical protein BACUNI_04379 [Bacteroides uniformis ATCC 8492]
gi|270273817|gb|EFA19679.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316903469|gb|EFV25323.1| exonuclease [Bacteroides sp. 4_1_36]
Length = 256
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 41/205 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ N V +D ET G ++ DR + ++V + E + + +P P EA
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPE-MPIPAEASA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GI + D E +R I + G+N+ RFD F R D
Sbjct: 60 VHGIY-DADIADCPTFKEVARNIANDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVDI-- 114
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
SR +DV + K++ L+ A G +
Sbjct: 115 -----DMSRRKFVDVQVIFH-------------------KMEQRTLSAAYKFYCGKNLED 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A+AD AT ++ ++ P+L
Sbjct: 151 AHTAEADTRATYEVLMSQLDRYPEL 175
>gi|330899885|gb|EGH31304.1| oligoribonuclease [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 178
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 34/176 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+ + D E G D D + A + D + + V +D+ L A
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL----AKMDEW 60
Query: 61 -------TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSR 107
+G+T Q+ V AE + +F + C N+I D R
Sbjct: 61 NTRQHGGSGLT-QRVRESTVSMAEAEAQTLEFIKLWVPERSSPICG---NSICQD----R 112
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
YR+ +W + + D+ + +SP+ G+T L D+
Sbjct: 113 RFLYRHM--PTLENWFHYRN-LDVSTLKELAARWSPEL----KFKKGSTHLALDDI 161
>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str.
ATCC 3502]
gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC
3502]
gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A str. ATCC 19397]
gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum A str. Hall]
Length = 1432
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 42/189 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ FV++D ET G D+ + V++++ + ++ F + D + +
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFVNPERSIPDKI-----TEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFY 115
T IT E +I F IG + N FD +
Sbjct: 470 TSITDDMVDDK-----EAIDKILPRFID----FIGDSVVVAHNASFDVSFINKNC----- 515
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ ++N ++D + P+ +KL +A GI N H
Sbjct: 516 KDLKIEFENS-----VMDTVTLSRFLFPEL----------KRYKLNVIAKHLGISLENHH 560
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 561 RAVDDAKAT 569
>gi|220935624|ref|YP_002514523.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
gi|219996934|gb|ACL73536.1| ribonuclease T [Thioalkalivibrio sp. HL-EbGR7]
Length = 216
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 39/201 (19%), Positives = 65/201 (32%), Gaps = 52/201 (25%)
Query: 9 DYETFGRDVALDRPAQFAGV--RVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D Q A V R+D + + T F +P + DP+++ + GI P
Sbjct: 23 DVETGGFNPRTDALLQVAAVLLRMDPEGQLYRHQTLSFHVQPFEGANLDPKSLEVNGINP 82
Query: 66 QKALRDGVVEAEFSRR----IHQFFSVPNT---CIIGYNNIRFDDYYS-----RNIFYRN 113
LR E + + + + ++G+N FD + R RN
Sbjct: 83 WHPLRIAHPEKDALATVFRGVREEMKLNACKRAILVGHNA-GFDLSFIHQGAERAGLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDV-------MRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
+ + S D + + A G++W + +
Sbjct: 142 PFHPF--------SSLDTVTLSAMAFGQTVLARAVQAAGMEWSNSE-------------- 179
Query: 167 NGIEHVNAHDAKADVYATLAL 187
AH A D T L
Sbjct: 180 -------AHSAVYDAEKTADL 193
>gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549]
gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1]
Length = 230
Score = 46.3 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 60/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V +T F+C P + + A+ I G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNTLHFYCNPNYEV--EAGALAIHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 62 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELGLLRNNKYGTLEQN 117
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 118 VARIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 163
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 164 LLADVYLAM 172
>gi|192360800|ref|YP_001983571.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
gi|190686965|gb|ACE84643.1| oligoribonuclease [Cellvibrio japonicus Ueda107]
Length = 185
Score = 45.9 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G D D + A + D + VF D +
Sbjct: 9 NNLIWIDLEMTGLDPDKDVIIEIATIVTDAHLNILAEGPVFAIHQPDSIM 58
>gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
Length = 238
Score = 45.9 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 60/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V +T F+C P + + A+ I G+T
Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNTLHFYCNPNYEV--EAGALAIHGLT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 70 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELGLLRNNKYGTLEQN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 126 VARIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 171
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 172 LLADVYLAM 180
>gi|66043831|ref|YP_233672.1| oligoribonuclease [Pseudomonas syringae pv. syringae B728a]
gi|75503630|sp|Q4ZYY8|ORN_PSEU2 RecName: Full=Oligoribonuclease
gi|63254538|gb|AAY35634.1| Exonuclease [Pseudomonas syringae pv. syringae B728a]
gi|330971545|gb|EGH71611.1| oligoribonuclease [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 178
Score = 45.9 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 34/176 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+ + D E G D D + A + D + + V +D+ L A
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL----AKMDEW 60
Query: 61 -------TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSR 107
+G+T Q+ V AE + +F + C N+I D R
Sbjct: 61 NTRQHGGSGLT-QRVRESTVSMAEAEAQTLEFIKLWVPERSSPICG---NSICQD----R 112
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
YR+ +W + + D+ + +SP+ G+T L D+
Sbjct: 113 RFLYRHM--PTLENWFHYRN-LDVSTLKELAARWSPEL----KFKKGSTHLALDDI 161
>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
Length = 1463
Score = 45.9 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 27/196 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E IE E F + +TG
Sbjct: 420 ETYVVFDVETTGLSAVYDTIIELAAVKVKGG-EIIERFERFA---NPHRPLSATIIELTG 475
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E E R + + +T + +N FD + N+ Y+ +S +
Sbjct: 476 ITDDMLKD--APEVEEVIRDFKEWVGDHTLVA--HNASFDIGFI-NVAYKRLLNSEKV-- 528
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 529 QNP-----VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDTE 573
Query: 183 AT-LALVWLIREKKPK 197
AT LV ++++ K
Sbjct: 574 ATGYLLVKMLKDAAEK 589
>gi|227536554|ref|ZP_03966603.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
ATCC 33300]
gi|227243631|gb|EEI93646.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
ATCC 33300]
Length = 316
Score = 45.9 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 39/191 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
+D ET G ++ LDR + + ++V + EV + +P P E+ GI
Sbjct: 9 LAFFDLETTGVNIPLDRIVEISILKVMPD----GNKEVLTRRINPG-MPIPAESSMFHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ ++D E + I F + + GYN+ +FD F R D +
Sbjct: 64 Y-DEDVKDLPSFKELGQEIADFIGDAD--LAGYNSNKFDVPMLMEEFLRANVD-FSLEGR 119
Query: 124 NGNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++ ++A Y F D QDL NAH A+
Sbjct: 120 NFVDVQNIFHQMEQRTLKAAYKFYCD----------------QDLN--------NAHTAE 155
Query: 179 ADVYATLALVW 189
ADV AT ++
Sbjct: 156 ADVTATYEVLK 166
>gi|302554973|ref|ZP_07307315.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
gi|302472591|gb|EFL35684.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
Length = 238
Score = 45.9 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 24/177 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET G D R A + V AD +P PE AV + GI+ +
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRG-----GEPSGRREWLADPGVPIPEDAVAVHGISTE 65
Query: 67 KALRDGVVEAEFSRRIHQ-FFSVPNTCI--IGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+A +G + + + + S T + + YN FD R+ S R
Sbjct: 66 RAAAEGRPADQVADAMAEVLTSYWKTGVPVVAYNA-AFDLTLLSAELRRHGLPSLR---- 120
Query: 124 NGNSRWDLLDVMRAIYAFSPDGI-QWPSR-DDGATSFKLQDLALANGIEHVNAHDAK 178
D L + P I +W R G + L+ + G+ +AHDA
Sbjct: 121 ------DRLGGVDPAPVIDPYTIDRWVDRYRRGKRN--LEAVCAEYGVVLDSAHDAL 169
>gi|239945175|ref|ZP_04697112.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
gi|239991636|ref|ZP_04712300.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
11379]
gi|291448639|ref|ZP_06588029.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
gi|291351586|gb|EFE78490.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
Length = 237
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 55/182 (30%), Gaps = 22/182 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
V +D ET G DV DR A VR+D E + +A I GI
Sbjct: 7 TLVGFDLETTGTDVESDRIVTAALVRLDPDGTVAEQRTWL---LDPGVVIPEQASAIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
A + G A I S ++ N R+D R S
Sbjct: 64 GTDHARKHGTRAASAVEEIAHAVAEVLRSDVPLVVM---NARYDLSLLDRECRRYGLPSV 120
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+G + ++ + G + LQ L G+ AHDA
Sbjct: 121 E-ERVDGAPSPVIDPLVIDKHVDKY--------RKGKRA--LQALCDHYGVTLDGAHDAT 169
Query: 179 AD 180
AD
Sbjct: 170 AD 171
>gi|228473001|ref|ZP_04057758.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
33624]
gi|228275583|gb|EEK14360.1| DNA polymerase III, epsilon subunit [Capnocytophaga gingivalis ATCC
33624]
Length = 453
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 32/192 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITG 62
+ I D ET G + + + A R D Q + + K DD++ V +TG
Sbjct: 2 YAIIDIETTGGKMGEEAITEIAIYRFDGQ-KVTDRFISLINPEKKIDDFV-----VRLTG 55
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I+ K +R E ++RI + CI+ +N FD F R +D Y+ S
Sbjct: 56 IS-NKTVRQAPKFYEVAKRIVEITED---CILVAHNASFDYRVLSLEFRRLGFD-YQRST 110
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
L + PD S+ L L + GI +N H A D
Sbjct: 111 ---------LCTVEMSQRLLPDE----------PSYSLGKLTRSLGIPLLNRHRANGDAM 151
Query: 183 ATLALVWLIREK 194
AT+ L L+ ++
Sbjct: 152 ATVHLFKLLLDR 163
>gi|300773554|ref|ZP_07083423.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
ATCC 33861]
gi|300759725|gb|EFK56552.1| DNA polymerase III epsilon subunit [Sphingobacterium spiritivorum
ATCC 33861]
Length = 316
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 39/191 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
+D ET G ++ LDR + + ++V + EV + +P P E+ GI
Sbjct: 9 LAFFDLETTGVNIPLDRIVEISILKVMPD----GNKEVLTRRINPG-MPIPAESSMFHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ ++D E + I F + + GYN+ +FD F R D +
Sbjct: 64 Y-DEDVKDLPSFKELGQEIADFIGDAD--LAGYNSNKFDVPMLMEEFLRANVD-FSLEGR 119
Query: 124 NGNSRWDLLD-----VMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++ ++A Y F D QDL NAH A+
Sbjct: 120 NFVDVQNIFHQMEQRTLKAAYKFYCD----------------QDLN--------NAHTAE 155
Query: 179 ADVYATLALVW 189
ADV AT ++
Sbjct: 156 ADVTATYEVLK 166
>gi|298528189|ref|ZP_07015593.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511841|gb|EFI35743.1| DNA polymerase III, epsilon subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 249
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 17/181 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK-PADDYLPDPEAVFITGI 63
FV+ D E G +V D +R+ + +FC P D +P +++ I GI
Sbjct: 52 FVVLDTELTGLNVKKDEIVTIGALRI-SEMRIDMEQSFYFCACPTRD-VPK-QSIVIHGI 108
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TP +A + E + + F N+ I+G+N I D R +
Sbjct: 109 TPSEA-QKAPPLKEALQGLLDFCG--NSIIVGHN-INLDISVIN----RELKKEFGGELH 160
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N +D MR + S+ L+ L+ G+ H+A D
Sbjct: 161 NPC-----IDTMRLARQYREGQWTGAYECYEEYSYNLRKLSREFGLPLFTEHNAFTDALQ 215
Query: 184 T 184
T
Sbjct: 216 T 216
>gi|331000795|ref|ZP_08324441.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
gi|329570323|gb|EGG52056.1| oligoribonuclease [Parasutterella excrementihominis YIT 11859]
Length = 204
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + ++R + A V D Q I
Sbjct: 29 NNLIWMDLEMTGLEPQINRILEMAAVITDPQLNVIAE 65
>gi|145588723|ref|YP_001155320.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047129|gb|ABP33756.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 218
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 24/190 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G +VA D+ V++ KP + E+V I + +
Sbjct: 46 DCETTGLNVAQDQIISIGAVKIVGNQLITSERLELLVKPDKEV--SAESVKIHRLR-ELD 102
Query: 69 LRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ +G+ ++ QF S P I+GY + FD I +R
Sbjct: 103 IANGLDPEVAVAKLMQFIGSRP---IVGY-YLEFDMAMLHKIIWRMLGQGLPQPK----- 153
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDG-ATSFKLQDLALANGIEHVNAHDAKADVYAT-- 184
++V Y + + P G + L + +AHDA D T
Sbjct: 154 ----IEVSAMYYEYKNAQL--PINLRGQMIDLRFDTLMKDLNLPVRDAHDALNDAVMTGM 207
Query: 185 --LALVWLIR 192
+ L L++
Sbjct: 208 AFIKLRQLLK 217
>gi|164663451|ref|XP_001732847.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
gi|159106750|gb|EDP45633.1| hypothetical protein MGL_0622 [Malassezia globosa CBS 7966]
Length = 186
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
V D E G D DR + A + D Q ++ + + L
Sbjct: 20 LVWIDCEMTGLDPNNDRLLEIACIVTDGQLRPVDEGVSYVIRTQPHVL 67
>gi|94984265|ref|YP_603629.1| exonuclease, RNase T and DNA polymerase III [Deinococcus
geothermalis DSM 11300]
gi|94554546|gb|ABF44460.1| exonuclease domain in DNA-polymerase alpha and epsilon chain,
ribonuclease T [Deinococcus geothermalis DSM 11300]
Length = 188
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 18/184 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T + D ET GRD A P G+ ++ + + Y + EA+ +
Sbjct: 10 LTQPIIFVDTETGGRDPAR-HPLLTVGLVTLTPQGEVTRPLHLRVR-HEHYEVEEEAMAV 67
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI E + + + ++G +N+ +D F R +
Sbjct: 68 NGIDLATHHATAQAPEEVAEAVRAYARAVGRVMLGGHNLAYD-----LGFLRWLLPDLKS 122
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ G L P + P L LA G+ + AHDA D
Sbjct: 123 IFRRGRVDTKLTAQFLLHAGILPRKVGTP----------LDQLAKYFGLAY-QAHDALED 171
Query: 181 VYAT 184
T
Sbjct: 172 ARVT 175
>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
14580]
gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
Length = 1438
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 70/196 (35%), Gaps = 27/196 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E IE E F + +TG
Sbjct: 420 ETYVVFDVETTGLSAVYDTIIELAAVKVKGG-EIIERFERFA---NPHRPLSATIIELTG 475
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E E R + + +T + +N FD + N+ Y+ +S +
Sbjct: 476 ITDDMLKD--APEVEEVIRDFKEWVGDHTLVA--HNASFDIGFI-NVAYKRLLNSEKV-- 528
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 529 QNP-----VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDTE 573
Query: 183 AT-LALVWLIREKKPK 197
AT LV ++++ K
Sbjct: 574 ATGYLLVKMLKDAAEK 589
>gi|46255199|ref|YP_006111.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
gi|46198048|gb|AAS82458.1| hypothetical protein TT_P0128 [Thermus thermophilus HB27]
Length = 1649
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 24/180 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E D + + A V D + +P PD E +TGI ++
Sbjct: 12 DLEATSTDPSEAEVLEVAAV--DGEGRVFHRYLATQ-RPLP---PDHEVFQLTGIPYEEY 65
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
V E + F ++G+N +R+D + W
Sbjct: 66 EAKKVAPKEALEELLAFLGGRP--LLGHNLLRYDLPLLQRHLEEAGLP----RWQG---- 115
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEHVNAHDAKADVYATLAL 187
+ LD +R + +P+ G ++L DL A G AH A D ATLA+
Sbjct: 116 -EALDTLRLAHLL------FPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAV 168
>gi|322833483|ref|YP_004213510.1| ribonuclease T [Rahnella sp. Y9602]
gi|321168684|gb|ADW74383.1| ribonuclease T [Rahnella sp. Y9602]
Length = 238
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 41/213 (19%), Positives = 65/213 (30%), Gaps = 36/213 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + W + + T F +P + + PEA+ GI P
Sbjct: 34 DVETAGFNAKTDALLEIAAITLKMDEDGWLQSDETVHFHVEPFEGAILVPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEYEALHEIFKVIRKGMKEQNCNRAIIVAHNANFDHSFLMAAAERAGLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + I F + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACIS------AGIVF-----------DSSQA 191
Query: 175 HDAKADVYATLALVWLIREKKPKLFEYLYDYRN 207
H A D T L + + +L + +
Sbjct: 192 HSALYDTERTAELFCELVNRWKRLGGWPLALSD 224
>gi|303257152|ref|ZP_07343166.1| oligoribonuclease [Burkholderiales bacterium 1_1_47]
gi|302860643|gb|EFL83720.1| oligoribonuclease [Burkholderiales bacterium 1_1_47]
Length = 180
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + ++R + A V D Q I
Sbjct: 5 NNLIWMDLEMTGLEPQINRILEMAAVITDPQLNVIAE 41
>gi|213962688|ref|ZP_03390949.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
Capno]
gi|213954683|gb|EEB66004.1| DNA polymerase III, epsilon subunit [Capnocytophaga sputigena
Capno]
Length = 442
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 82/226 (36%), Gaps = 44/226 (19%)
Query: 5 FVIYDYETFGRDVALDR-------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
+ I D ET G D QF G + Q+ + + E +P DY+
Sbjct: 2 YAILDIETTG--GKYDEEGITEIAIYQFDGHTITDQFISLINPE----RPIQDYV----- 50
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGI K LR+ E ++RI + I+G+N FD + F R Y+
Sbjct: 51 TKLTGIN-NKMLRNAPKFYEIAKRIVEI--TEGCIIVGHNA-AFDYRILQTEFRRLGYEY 106
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ + L + PD S+ L L + GI H A
Sbjct: 107 IKTT----------LCTVELSQQLIPD----------KESYSLGKLVRSLGIPMSERHRA 146
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
D ATL L + EK K + + KN +R + +++ L
Sbjct: 147 SGDAMATLNLFKYLLEKDTK--KSIITASVKNDVRLEMASRHLKIL 190
>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 1410
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 32/186 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D ET G D + V++ + ++ +++ E F P + FIT +
Sbjct: 398 SFVVFDIETTGLSSINDNIIEIGAVKI-KNFQIVDTFETF-VNPQVHI-----SKFITKL 450
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T D V E I F ++ ++ +N FD F + +
Sbjct: 451 T--GITDDMVKEYPSIEEILPKFLDFIKDSILVAHNA-NFD-----VTFIKTKARNLGME 502
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
DN D L++ R +Y + ++KL +A G+ N H A D
Sbjct: 503 VDNPV--LDTLELSRHMY-------------ENLKNYKLDTVAQHLGVSLENHHRAVDDA 547
Query: 182 YATLAL 187
AT +
Sbjct: 548 KATAEI 553
>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
Length = 231
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD + + + N+
Sbjct: 55 MVKGSDPIDVVLKRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------KAENAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
Length = 862
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D A DR Q A +R+D + +E+ E F +P ++ + G +
Sbjct: 495 VVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERF---INPG-VPVGQSEEVHGFSD 550
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--FYDSYRWSWD 123
G E + + FS N I+G+N + +D N R+ ++
Sbjct: 551 AYLQEHGE-EPAIVLQAFKEFSK-NAIIVGHN-VNYDVTIFTNELARHNLGNPEFKAI-- 605
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D LD+ R Y P+ + KL LA I H H+A D+ A
Sbjct: 606 -----YDTLDIYRRFY---PNL----------PNHKLGFLASKFPIHHEPTHNAMDDILA 647
Query: 184 TLAL 187
T L
Sbjct: 648 TAQL 651
>gi|260221319|emb|CBA29763.1| hypothetical protein Csp_A13780 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 307
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 35/184 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADD-YLPDPEAV 58
++ D ET G D A ++ + A +RVD + +V+ +P PE V
Sbjct: 37 KTILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIP-PEVV 95
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
ITGI + EA R+ + + I +N FD + + + +
Sbjct: 96 AITGIQDADVQGQALDEA----RVAELMQGVDVVIA--HNAGFDRPFVESRL--PAFAAL 147
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W+ S D + W + G +S KL+ LA G+ + AH A+
Sbjct: 148 PWA----CSFAD---------------LDW--KSLGRSSAKLESLAQELGLFYD-AHRAE 185
Query: 179 ADVY 182
D +
Sbjct: 186 MDCH 189
>gi|311896098|dbj|BAJ28506.1| putative oligoribonuclease [Kitasatospora setae KM-6054]
Length = 200
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV- 58
M + V D E G D+ D + A + D + + +P + L PE V
Sbjct: 1 MNDRLVWIDCEMTGLDLDRDALIEVAALVTDSELNVLGEGVDVIIRPPAEALEGMPEVVR 60
Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQ 84
T L DG+ AE R+
Sbjct: 61 QMHTASGLLDELADGLTMAEAQERVLA 87
>gi|194290291|ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
gi|193224126|emb|CAQ70135.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424]
Length = 211
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G DR + A V D + +
Sbjct: 14 NNLIWLDMEMTGLQPDTDRIIEVAVVITDSELNILAE 50
>gi|299132474|ref|ZP_07025669.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
gi|298592611|gb|EFI52811.1| Exonuclease RNase T and DNA polymerase III [Afipia sp. 1NLS2]
Length = 297
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 44/196 (22%), Positives = 65/196 (33%), Gaps = 38/196 (19%)
Query: 9 DYETFGRDVALDRPAQFAGV----RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G D D + A V +D ++ +P+ E +TGIT
Sbjct: 47 DVETTGLDPDRDEIIELAMVPFRYALDGTVVEVLEPFDRLREPSKPI--SSEITVLTGIT 104
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +E + F+ P +I +N FD F F +
Sbjct: 105 DAMVAGKSIDPSEVT-----MFAAPAAVVIAHNA-AFD-----RRFLERFSPVFSTK--- 150
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+A S I W +G KL LA+A G + H A D A
Sbjct: 151 -------------PWACSMSEIDW--AAEGFEGAKLSYLAMALGFFYDR-HRAANDCLAA 194
Query: 185 LALV--WLIREKKPKL 198
+ L+ L R + P L
Sbjct: 195 IELLARELPRARAPAL 210
>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
str. F0314]
gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
str. F0314]
Length = 240
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLP 53
M+ +I D ET G DR +FAG+ D + P D +P
Sbjct: 1 MSKRQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLH-------LYIHPERD-MP 52
Query: 54 DPEAVFITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ EA + G+T + AE R+I F II +N +FD + F R
Sbjct: 53 E-EAAKVHGLTIEVLEEKNAPPFAEVGRQIAD-FIRDAELII--HNAKFDIGFLNMEFRR 108
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMR 136
S + G + D L + R
Sbjct: 109 MGLPSIE---ELGCTVTDTLAMAR 129
>gi|71733293|ref|YP_272859.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298484922|ref|ZP_07003021.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|123638427|sp|Q48P10|ORN_PSE14 RecName: Full=Oligoribonuclease
gi|71553846|gb|AAZ33057.1| oligoribonuclease [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298160609|gb|EFI01631.1| Oligoribonuclease [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|330886590|gb|EGH20251.1| oligoribonuclease [Pseudomonas syringae pv. mori str. 301020]
Length = 178
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
+ + D E G D D + A + D + + V +D+ L D
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQ 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
G + Q+ + AE + +F + C N+I D R YR
Sbjct: 65 HGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICG---NSICQD----RRFLYR 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
+ +W + + D+ + +SP+ G+T L D+
Sbjct: 118 HM--PTLENWFHYRN-LDVSTLKELAARWSPEL----KFKKGSTHLALDDI 161
>gi|42527504|ref|NP_972602.1| DNA polymerase III domain-containing protein [Treponema denticola
ATCC 35405]
gi|41818089|gb|AAS12513.1| DNA polymerase III domain protein [Treponema denticola ATCC 35405]
gi|325473756|gb|EGC76945.1| DNA polymerase III domain-containing protein [Treponema denticola
F0402]
Length = 217
Score = 45.9 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 43/208 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPEAVF 59
F +D ET G + +R + V+ D ++ + E KP PEA
Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDIRGVIARYNVLIDPE----KPMP-----PEAGK 66
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ IT + +F+ + F + NT ++ +N FD + R
Sbjct: 67 VNQITDEMLAGQ----PKFAEVLPDFLDFIRNTVLVAHNA-SFDINFINCELERCGKTKL 121
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N +D L F+ + + G S+ LQ+LA G++ VNAH A+
Sbjct: 122 T------NKVFDTLT-------FARETLP------GLQSYALQNLATQFGVQAVNAHRAE 162
Query: 179 ADVYATLALVWL----IREKKPKLFEYL 202
D + + EK + +Y
Sbjct: 163 DDARVCMEFFKIAVSHFFEKNKDMLDYY 190
>gi|315925789|ref|ZP_07921996.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
gi|315620898|gb|EFV00872.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
Length = 158
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 42/125 (33%), Gaps = 26/125 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP----DPEAVFI 60
+V+ D ET G D A +R + V+VD Q + LP DP
Sbjct: 48 YVVIDLETDGLDAAKNRIIEIGAVKVDGQTVSTFEQLIVH----PHRLPKKITDP----- 98
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI-----RFDDYYSRNIFYRNFY 115
TGIT G EAE + IG +++ FD + +R
Sbjct: 99 TGITDTLLADGGRPEAEAIKAFLA--------FIGSDDLIRYHVDFDVQFINQTLHRMDI 150
Query: 116 DSYRW 120
+
Sbjct: 151 EPLIR 155
>gi|169841901|ref|ZP_02875010.1| hypothetical protein cdivTM_32380 [candidate division TM7
single-cell isolate TM7a]
Length = 30
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 160 LQDLALANGIEHVNAHDAKADVYATLALVW 189
++ ++ N +EH AHDA +DV A +A+
Sbjct: 1 MELISKINNLEHTKAHDALSDVEALIAVTK 30
>gi|71282475|ref|YP_271028.1| oligoribonuclease [Colwellia psychrerythraea 34H]
gi|123630997|sp|Q47VZ4|ORN_COLP3 RecName: Full=Oligoribonuclease
gi|71148215|gb|AAZ28688.1| oligoribonuclease [Colwellia psychrerythraea 34H]
Length = 181
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
++ + D E G + D + A + D + + +F DD L +P +
Sbjct: 6 SNLIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNMNPWCIEH 65
Query: 61 TGIT 64
G +
Sbjct: 66 HGKS 69
>gi|323498389|ref|ZP_08103386.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
gi|323316531|gb|EGA69545.1| oligoribonuclease [Vibrio sinaloensis DSM 21326]
Length = 181
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 40/201 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFIT 61
+ + D E G D + + A + D + + V +D L E T
Sbjct: 6 QNLIWMDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQSDAELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ V E + R+ +F C N+I D R Y+
Sbjct: 66 HTGSGLVARVKASQVTEQDAIRQTIEFLEKWVPKGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + D+ + + P+ + G
Sbjct: 119 HM--PELEEYFHY-RYVDVSTLKELTRRWKPEVLD--------------------GFSKS 155
Query: 173 NAHDAKADVYATLALVWLIRE 193
+H A D+ ++A + R+
Sbjct: 156 GSHLALDDIRESIAELKYYRQ 176
>gi|304437027|ref|ZP_07396990.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369978|gb|EFM23640.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 180
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 72/203 (35%), Gaps = 43/203 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV--FFC--KPADDYLPDPE 56
M +++D ET G D A V + T V + + A+ P+
Sbjct: 1 MQEKVLVFDTETTGFRSD-DEVLTLAVV------NGVGETMVDGMYAPARKAEW----PD 49
Query: 57 AVFITGITPQKALRDGVVEAEFSRR-IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
A I I+P A+ G R + + F+ P+T ++GYN FD R
Sbjct: 50 AERINRISP--AMVAGCDPILAHREELERLFNAPDTLLVGYN-TEFDIRLLAQSGIRI-- 104
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL-ANGIEHV-- 172
N N DVM A AF + P G ++ L A+ +
Sbjct: 105 -------TNPNRH----DVMLAFSAFR----KVPDARRGG--YRWWKLTECADYYRYDWG 147
Query: 173 --NAHDAKADVYATLALVWLIRE 193
AH A AD ATL ++E
Sbjct: 148 NTVAHGALADTLATLFCYQKMKE 170
>gi|119900237|ref|YP_935450.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
gi|119672650|emb|CAL96564.1| putative DNA-directed polymerase III [Azoarcus sp. BH72]
Length = 474
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 32/195 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
+V+ D ET G DR + A +R++R + ++ E +P P + +TGI
Sbjct: 7 YVLVDLETTGAHPLRDRITEIAILRIERG-QLVQRWESL---INPG-VPIPPTIQGVTGI 61
Query: 64 TPQKALRDGVVEAEF-SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ G + + + C+ +N RFD F + Y + +
Sbjct: 62 --DDTMVAGAPDFAAVADTVAALLDD---CVFVAHNARFD-----YGFLKTAYAALGREF 111
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D +L ++ A PD G L + +G+ H A D
Sbjct: 112 DAP-----VLCTVKLSRALYPD-----HHRHG-----LDAIIERHGLACGARHRAMGDTE 156
Query: 183 ATLALVWLIREKKPK 197
++ + P
Sbjct: 157 VLWQFARVVEQAFPA 171
>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
43243]
gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
43243]
Length = 1403
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 38/197 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G DR + V++ E I+ F + +P P I +T
Sbjct: 373 YVVFDIETTGFSAENDRIIEIGAVKI-EDGEIIDRFSTFV----NPEVPIP--FKIEKLT 425
Query: 65 -PQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
++ G + E ++ F ++ +N FD + RN + +
Sbjct: 426 SINDSMVMGAPKIE---QVLPEFLEFCEGCVVVAHNA-EFDTGFIRNKAAKQGM-----T 476
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+DN ++D + P +FKL L + + H A D
Sbjct: 477 FDNT-----VVDTLAIARFLVPRL----------HNFKLDTLTKHFNVVLTSHHRAVDDA 521
Query: 182 YAT----LALVWLIREK 194
AT L + L++ +
Sbjct: 522 EATAGIFLKMCELLKMR 538
>gi|229588067|ref|YP_002870186.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
gi|312958644|ref|ZP_07773164.1| exonuclease [Pseudomonas fluorescens WH6]
gi|229359933|emb|CAY46787.1| oligoribonuclease [Pseudomonas fluorescens SBW25]
gi|311287187|gb|EFQ65748.1| exonuclease [Pseudomonas fluorescens WH6]
Length = 180
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 20/100 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ + D E G + D + A + D + V + +AV T
Sbjct: 4 PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVI-------AIHHSDAVLAT 56
Query: 62 ------------GITPQKALRDGVVEAEFSRRIHQFFSVP 89
G+T Q+ + AE F
Sbjct: 57 MDEWNTRTHGNSGLT-QRVRDSRISMAEAEAETIAFLEKW 95
>gi|218708317|ref|YP_002415938.1| oligoribonuclease [Vibrio splendidus LGP32]
gi|218321336|emb|CAV17286.1| Oligoribonuclease [Vibrio splendidus LGP32]
Length = 181
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 40/201 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
++ V E + ++ +F C N+I D R Y+
Sbjct: 66 HTGSGLVKRIQDSTVSEQDAIQQTIEFLEKWVPKGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + D+ + + P+ + G
Sbjct: 119 HM--PELEEYFHY-RYVDVSTLKELTRRWKPEVLD--------------------GFSKS 155
Query: 173 NAHDAKADVYATLALVWLIRE 193
+H A D+ ++A + R+
Sbjct: 156 GSHLALDDIRESIAELQYYRK 176
>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
Length = 1449
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 30/186 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G DR + A V+V + +I+S E + P P + IT +
Sbjct: 428 TYVVFDVETTGLSAERDRLIEIAAVKV-KNGSEIDSFES-YINPRR-----PISELITRL 480
Query: 64 T--PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T ++D E E + + + + +N +FD + F R +
Sbjct: 481 TSITDDDVKDAPFEEEVMTNFYNWLDEDDILVA--HNAKFDLGFLDKSFERLGLKN---- 534
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N+ D L + RA + L +LA + V H A D
Sbjct: 535 --KNNASIDTLFISRA------------ENKEAKRH-GLSNLAKLYKVRLVQHHRAIYDT 579
Query: 182 YATLAL 187
AT +
Sbjct: 580 KATAEI 585
>gi|328472277|gb|EGF43147.1| oligoribonuclease [Vibrio parahaemolyticus 10329]
Length = 181
Score = 45.9 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 60/208 (28%), Gaps = 44/208 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D + + E K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNT 65
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIF 110
A +G+ ++ + E + + +F + G N+I D R
Sbjct: 66 HTA---SGL-VERVRNSKISEQDAVTQTIEFLEKWVPKGVSPICG-NSIGQD----RRFL 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
Y++ + + D+ + + P+ + G
Sbjct: 117 YKHM--PELEEYFHY-RYLDVSTLKELTRRWKPEVLD--------------------GFS 153
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
H A D+ ++A + RE K+
Sbjct: 154 KQGTHLALDDIRESIAELKYYRETIFKI 181
>gi|58581832|ref|YP_200848.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84623734|ref|YP_451106.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188576613|ref|YP_001913542.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
gi|81311869|sp|Q5H0Q8|ORN_XANOR RecName: Full=Oligoribonuclease
gi|123522125|sp|Q2P3P5|ORN_XANOM RecName: Full=Oligoribonuclease
gi|58426426|gb|AAW75463.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84367674|dbj|BAE68832.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521065|gb|ACD59010.1| oligoribonuclease [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 194
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
+ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETL----EAMDE 63
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ L V A+ + F C N+I D
Sbjct: 64 WNRNQHRRSGLW-QRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCG---NSICQD---- 115
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P +A
Sbjct: 116 RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP--------------------TVA 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 153 NGFAKSSAHTALSDVRDSINELRHYRQ 179
>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. D5]
gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
sp. D5]
Length = 1498
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 30/188 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + ++++D ET G D+ + V+V E ++ F +P + +
Sbjct: 457 LDDTYIVFDLETTGFSAIKDKIIEIGAVKV-VNGEIVDRFSTFVNPKRP--IPF-QITQL 512
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-YRNFYDSYR 119
T IT + + G + E F+ + +N FD + Y++ +
Sbjct: 513 TSITDEMVM--GYPDIETILPQFLEFAKDGVLVA--HNAGFDVGFIEQNCRYQDIEPHFV 568
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ +D + P + +KL +A A GI N H A
Sbjct: 569 Y-----------VDTVAMARVLLPTLSK----------YKLNVVAKALGISLENHHRAVD 607
Query: 180 DVYATLAL 187
D AT +
Sbjct: 608 DAAATSEI 615
>gi|229847336|ref|ZP_04467438.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
gi|229809761|gb|EEP45485.1| oligoribonuclease [Haemophilus influenzae 7P49H1]
Length = 182
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +R + A + D+ + V D L
Sbjct: 6 QNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDGLL 55
>gi|238897699|ref|YP_002923378.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465456|gb|ACQ67230.1| oligoribonuclease [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 185
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D D + A + D +
Sbjct: 10 QNLIWIDLEMTGLDPERDSIIEIATLVTDADLNILAE 46
>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
africanus TCF52B]
Length = 1365
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 49/223 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ ++D ET G + D +F V+ + + I++ + F KP D + +TGIT
Sbjct: 348 YTVFDLETTGTNARFDEIIEFGAVKY-KDGKIIDTFKSF-VKPNKDI--NDFTQKLTGIT 403
Query: 65 PQKALR-DGVVE--AEFSRRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSY 118
G+ E +F I T ++ +N + F R ++ ++ Y
Sbjct: 404 NDMLKDAPGIEEVVPKFLEFIE------GTVLVAHNADFDYGFIREVYRKMYDKDLIMPY 457
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
LD ++ ++ SF L L + H A
Sbjct: 458 -------------LDTLKLSKVILKGKVK---------SFGLGKLVEYFKLGPFKHHRAF 495
Query: 179 ADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
D T LF L + K ++ L DI +
Sbjct: 496 EDASVTAE-----------LFGKLVELLGKMGIKSLNDINKLK 527
>gi|166712351|ref|ZP_02243558.1| oligoribonuclease [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 194
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 64/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
++ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 8 SDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETL----EAMDE 63
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ L V A+ + F C N+I D
Sbjct: 64 WNRNQHRRSGLW-QRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCG---NSICQD---- 115
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P LA
Sbjct: 116 RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP--------------------TLA 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 153 NGFAKSSAHTALSDVRDSIDELRHYRQ 179
>gi|295096042|emb|CBK85132.1| RNAse T [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 219
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 44/220 (20%), Positives = 67/220 (30%), Gaps = 38/220 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLVP-DTTLHFHVEPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF---SVPNTC---IIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + N C I+ +N FD ++ R RN
Sbjct: 82 PTNPLRGAVSEYEALHAIFKMVRKGMKENDCSRAIMVAHNATFDHSFTMAAAERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACITAGIAFDGT-----------------Q 179
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
AH A D T L I + +L + ++ L+
Sbjct: 180 AHSALYDTERTAELFCEIVNRWKRLGGWPLPMGDEADLQS 219
>gi|330807223|ref|YP_004351685.1| Oligoribonuclease [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375331|gb|AEA66681.1| Oligoribonuclease [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 180
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G + D + A + D +
Sbjct: 4 PQNLIWIDLEMTGLNPDTDVIIEMATIVTDSDLNTLAE 41
>gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct]
Length = 230
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + + A+ I G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYEV--EAGALAIHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 62 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 117
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 118 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 163
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 164 LLADVYLAM 172
>gi|220920098|ref|YP_002495399.1| DNA polymerase III subunit epsilon [Methylobacterium nodulans ORS
2060]
gi|219944704|gb|ACL55096.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium
nodulans ORS 2060]
Length = 223
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 29/181 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D A +R+ +I ++E F PEA+ + + +
Sbjct: 35 DCETTGLDPRRDEIVAVAAIRIRGD--RILTSESFRATVQSQRPSSPEAIKVHRLLEAE- 91
Query: 69 LRDGVVEAEFSRRIHQFF-SVPNTCIIGYNN---IRFDDYYSRNIFYRNFYDSYRWSWDN 124
+R G+ + +F S P ++GY + D Y+R I +
Sbjct: 92 IRQGMPHDVMLPELLRFIGSRP---VVGYYTDFDVGMVDKYARRILRIRLPNP------- 141
Query: 125 GNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
R D+ + A Y +PD ++ SF +A G+ + HDA D
Sbjct: 142 ---RIDVSALYYACKYRDAPDYVKIDL------SF--ARIAADLGLPALPQHDAFNDALM 190
Query: 184 T 184
T
Sbjct: 191 T 191
>gi|311745409|ref|ZP_07719194.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
gi|126577956|gb|EAZ82176.1| DNA polymerase III PolC-type (PolIII) [Algoriphagus sp. PR1]
Length = 223
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 31/185 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFI 60
FV+ D ET G + ++D F V+++ Q +I + ++ K +P +
Sbjct: 38 SFVVLDTETTGLNPSVDHILSFGAVKIEDQMIQISTGVEWYLKSSKKDFKTIP------V 91
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G+ + V +F++R+ ++F N ++G+ ++ FD D
Sbjct: 92 HGL---IGNEEAVPLEQFAKRVLEYF--ENNILVGH-HLGFDLEMLEKALKPFGLDKI-- 143
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDA 177
N +D M + D FK L L I+ + H A
Sbjct: 144 --QNKC-----IDTMSLAIRLDHGLM----ADRNYIDFKDYSLDSLCQRYDIKTDDRHTA 192
Query: 178 KADVY 182
D +
Sbjct: 193 GGDAF 197
>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
Length = 1432
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 49/225 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++ FV++D ET G D+ + V++ ++ ++ P D + +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSELI-NPEKDI--SYKIQEL 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFY 115
TGIT + +E I F +G + N FD +
Sbjct: 470 TGITNELIKDKPTIE-----EILPKFME----FVGDSVLVAHNAEFDTGFISQKCREQG- 519
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
++ +D + P+ +L +A GI +N H
Sbjct: 520 --LLYNNKK-------VDTLMLARVMLPNL----------KRHRLNVVAKELGIPLLNHH 560
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
A D AT + F + + L D+ N+
Sbjct: 561 RAVDDAEATALI-----------FNKFLQMLTEKGAKTLSDVNNI 594
>gi|332885444|gb|EGK05693.1| hypothetical protein HMPREF9456_02495 [Dysgonomonas mossii DSM
22836]
Length = 256
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 29/197 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFIT 61
N + +D ET G D DR + + ++V E+ + + +P P A I
Sbjct: 7 NPIIFFDLETTGTDTVKDRIVELSYLKVYPN----GKEEMKTRRINPE-MPIPAGATAIH 61
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ + ++D + ++ + + G+N+ RFD F R D
Sbjct: 62 GIS-DEDVKDCPTFKQIAKSLADQM--EGCDLAGFNSSRFDIPLLAEEFLRADVDIDF-- 116
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
S+ ++DV + ++ + F + NAH A+AD
Sbjct: 117 -----SKRKMIDVQIIFHKKEQRTLEAAYK------FYCDK-------DLDNAHSAEADT 158
Query: 182 YATLALVWLIREKKPKL 198
AT ++ +K P L
Sbjct: 159 LATYEVLKAQLDKYPDL 175
>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
Length = 1476
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 35/191 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
+ +V++D ET G D + V++ + + ++ F + +P P + +T
Sbjct: 449 DTYVVFDLETTGLSPVNDSIIEIGAVKI-QNKKVVDRFSTFV----NPKIPIPYNIEQLT 503
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GI ++ VV+A+ I F ++ +N FD + R ++
Sbjct: 504 GI--DDSM---VVDADTIENILPEFLKFCDGAVMVAHNA-EFDVTFIREKTKTILGKAFE 557
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ ++D + A P+ G F L +A A + ++ H A
Sbjct: 558 CT---------VVDTVSLARALIPNL--------GK--FTLDHVAKALNVSLLHHHRAVD 598
Query: 180 DVY--ATLALV 188
D A + L
Sbjct: 599 DAECCADIFLA 609
>gi|153831492|ref|ZP_01984159.1| oligoribonuclease [Vibrio cholerae 623-39]
gi|148873026|gb|EDL71161.1| oligoribonuclease [Vibrio cholerae 623-39]
Length = 181
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + V E E + F C N+I D R Y+
Sbjct: 66 HTASGLVARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|238020295|ref|ZP_04600721.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC
51147]
gi|237867275|gb|EEP68281.1| hypothetical protein GCWU000324_00173 [Kingella oralis ATCC
51147]
Length = 192
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N+ D E G + D+ + A + D+ + +EVF +D+ + + E
Sbjct: 5 NNLCWLDMEMTGLNPETDKIIEVAMIITDKDLNVLAQSEVFAIHQSDEIMDNMDEWCTTT 64
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVP 89
TG+T + EAE +++ F
Sbjct: 65 HARTGLT-ARVKASSYNEAEVEQKLLDFMGEW 95
>gi|213852022|ref|ZP_03381554.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
Length = 32
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 437 KNKLQSLSGEYKGDEGKEGLINALYEYLQWVI 468
++LQ L +Y D+ K L+ AL++Y + ++
Sbjct: 1 ADELQMLVQQYADDKEKVALLKALWQYAEEIV 32
>gi|114706065|ref|ZP_01438968.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
gi|114538911|gb|EAU42032.1| DNA polymerase III subunit epsilon [Fulvimarina pelagi HTCC2506]
Length = 242
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVFITGI 63
+++D ET G D +DR + GV + W I T + +PA + DP A + GI
Sbjct: 4 IVFDTETTGLDNTIDRVIEIGGVEL---WNHIPTGKTYHQYIRPAGRKV-DPAAFDVHGI 59
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ + L + E E + FFS +N FD + R +
Sbjct: 60 SDEFLLDKPLFE-EIADEFVAFFSDAKLIA---HNANFDIGFLNAELQRLRHPPIE 111
>gi|15640368|ref|NP_229995.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591589|ref|ZP_01678842.1| oligoribonuclease [Vibrio cholerae 2740-80]
gi|121730775|ref|ZP_01682865.1| oligoribonuclease [Vibrio cholerae V52]
gi|147673115|ref|YP_001218609.1| oligoribonuclease [Vibrio cholerae O395]
gi|227080553|ref|YP_002809104.1| oligoribonuclease [Vibrio cholerae M66-2]
gi|229506863|ref|ZP_04396371.1| oligoribonuclease [Vibrio cholerae BX 330286]
gi|229508668|ref|ZP_04398162.1| oligoribonuclease [Vibrio cholerae B33]
gi|229516050|ref|ZP_04405501.1| oligoribonuclease [Vibrio cholerae RC9]
gi|229606377|ref|YP_002877025.1| oligoribonuclease [Vibrio cholerae MJ-1236]
gi|254851651|ref|ZP_05241001.1| oligoribonuclease [Vibrio cholerae MO10]
gi|255747141|ref|ZP_05421084.1| oligoribonuclease [Vibrio cholera CIRS 101]
gi|262149017|ref|ZP_06028162.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
gi|262166933|ref|ZP_06034653.1| oligoribonuclease [Vibrio cholerae RC27]
gi|298501303|ref|ZP_07011100.1| oligoribonuclease [Vibrio cholerae MAK 757]
gi|11133789|sp|Q9KV17|ORN_VIBCH RecName: Full=Oligoribonuclease
gi|172047716|sp|A5F3M7|ORN_VIBC3 RecName: Full=Oligoribonuclease
gi|9654757|gb|AAF93514.1| oligoribonuclease [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121546555|gb|EAX56757.1| oligoribonuclease [Vibrio cholerae 2740-80]
gi|121627652|gb|EAX60322.1| oligoribonuclease [Vibrio cholerae V52]
gi|146314998|gb|ABQ19537.1| oligoribonuclease [Vibrio cholerae O395]
gi|227008441|gb|ACP04653.1| oligoribonuclease [Vibrio cholerae M66-2]
gi|227012197|gb|ACP08407.1| oligoribonuclease [Vibrio cholerae O395]
gi|229346953|gb|EEO11920.1| oligoribonuclease [Vibrio cholerae RC9]
gi|229354303|gb|EEO19232.1| oligoribonuclease [Vibrio cholerae B33]
gi|229355968|gb|EEO20887.1| oligoribonuclease [Vibrio cholerae BX 330286]
gi|229369032|gb|ACQ59455.1| oligoribonuclease [Vibrio cholerae MJ-1236]
gi|254847356|gb|EET25770.1| oligoribonuclease [Vibrio cholerae MO10]
gi|255735190|gb|EET90592.1| oligoribonuclease [Vibrio cholera CIRS 101]
gi|262024638|gb|EEY43319.1| oligoribonuclease [Vibrio cholerae RC27]
gi|262031207|gb|EEY49826.1| oligoribonuclease [Vibrio cholerae INDRE 91/1]
gi|297539994|gb|EFH76058.1| oligoribonuclease [Vibrio cholerae MAK 757]
Length = 181
Score = 45.9 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + V E E + F C N+I D R Y+
Sbjct: 66 HTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|320533707|ref|ZP_08034325.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
gi|320134075|gb|EFW26405.1| exonuclease [Actinomyces sp. oral taxon 171 str. F0337]
Length = 264
Score = 45.9 bits (108), Expect = 0.016, Method: Composition-based stats.
Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 33/204 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD--DYLPDPE------AVF 59
+D ET G D + DR A V + +P +L DP A
Sbjct: 32 FDTETTGVDPSGDRLVTAALVWR-------AEPQADGVRPQSVTTWLADPGVEIPEAASA 84
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ G+T ++A +G E + T +I +N +D R+
Sbjct: 85 VHGVTTERARAEGRPVTEVLTEVSDHLVAAMTAGTPVIAFNA-SYDLTLMEAELARHGLP 143
Query: 117 SY-RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
+ D L + RA+ + G +L DL G+ A
Sbjct: 144 TMRSRLGRELGPIADPLVLDRAVDRYRR----------GKR--RLGDLCEVYGVHVNEAL 191
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A+ DV ATL ++ + P++
Sbjct: 192 HTAEVDVAATLDVLEALAAAHPQV 215
>gi|282879820|ref|ZP_06288549.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
gi|281306330|gb|EFA98361.1| exonuclease [Prevotella timonensis CRIS 5C-B1]
Length = 286
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 32/184 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I+D ET G D+ DR Q + ++V E+ E F P + +P E + +TGIT
Sbjct: 9 LIIFDLETTGLDLVNDRIIQISYIKVLPNGEE--ERESIFVNP-EKPIPH-EVIELTGIT 64
Query: 65 PQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
D +F + + F + I G+N+ FD F R D
Sbjct: 65 ----NEDVANAPKFKEIAAHLQNQFKDSD--IAGFNSNHFDVPLLAEEFLRAGIDFDF-- 116
Query: 122 WDNGNSRWDLLDVMRAIYAF-SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
S+ +L+DV + + G K++ E AH A D
Sbjct: 117 -----SKCNLIDVQTIFHKMERRNLAAAYKFYCGR---KME--------EDFQAHKANED 160
Query: 181 VYAT 184
AT
Sbjct: 161 AEAT 164
>gi|153217654|ref|ZP_01951335.1| oligoribonuclease [Vibrio cholerae 1587]
gi|229519881|ref|ZP_04409314.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
gi|297582247|ref|ZP_06944163.1| oligoribonuclease [Vibrio cholerae RC385]
gi|124113399|gb|EAY32219.1| oligoribonuclease [Vibrio cholerae 1587]
gi|229343122|gb|EEO08107.1| oligoribonuclease [Vibrio cholerae TM 11079-80]
gi|297533548|gb|EFH72393.1| oligoribonuclease [Vibrio cholerae RC385]
Length = 181
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + V E E + F C N+I D R Y+
Sbjct: 66 HTASGLVARVRQSKVSEEEAIDQTLAFLKQWVPEGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
Length = 862
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERF---INPG-VPVGQSEEVHGFSD 550
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--FYDSYRWSWD 123
G E + + FS N I+G+N + +D N R+ ++
Sbjct: 551 AYLKEHGE-EPAIVLQAFKEFSK-NAIIVGHN-VNYDVTIFTNELARHNLGNPEFKAI-- 605
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D LD+ R Y P+ + KL LA I H H+A D+ A
Sbjct: 606 -----YDTLDIYRRFY---PNL----------PNHKLGFLASEFPINHEPTHNAMDDILA 647
Query: 184 TLAL 187
T L
Sbjct: 648 TSQL 651
>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
168]
gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
168]
gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
SMY]
gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
subtilis str. 168]
Length = 1437
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 27/200 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKVKGG-EIIDKFEAFA---NPHRPLSATIIELTG 474
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + I F I+ +N FD + N+ Y+ + +
Sbjct: 475 ITDDMLQDA----PDVVDVIRDFREWIGDDILVAHNASFDMGFL-NVAYKKLLEVEKA-- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 528 KNP-----VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDTE 572
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT L+ ++++ K +Y
Sbjct: 573 ATAYLLLKMLKDAAEKGIQY 592
>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 1437
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 27/200 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKVKGG-EIIDKFEAFA---NPHRPLSATIIELTG 474
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + I F I+ +N FD + N+ Y+ + +
Sbjct: 475 ITDDMLRDA----PDVVDVIRDFREWIGDDILVAHNASFDMGFL-NVAYKKLLEVEKA-- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 528 KNP-----VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDTE 572
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT L+ ++++ K +Y
Sbjct: 573 ATAYLLLKMLKDAAEKGIQY 592
>gi|294506958|ref|YP_003571016.1| DNA polymerase III polC-type [Salinibacter ruber M8]
gi|294343286|emb|CBH24064.1| DNA polymerase III polC-type [Salinibacter ruber M8]
Length = 258
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 34/185 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
V +D E G D R Q R ++ T P ++ P AV +T
Sbjct: 17 LVFFDLEATGTDPQAARIIQIGMQRFVPSEDGAALDETIDVLVDPEEEI---PAAVTDLT 73
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD---SY 118
G++P + + A RI + + + GYN + +D + F R+
Sbjct: 74 GLSPDAVRQAPPLGAHL-DRIAPLLADAD--LAGYNALAYDIPLLQAEFERHGRTLPGPD 130
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+LD R P + S + G +AHDA
Sbjct: 131 DRV---------VLDPYRLEQVLRPRTL----------SALYERYT---GDALDDAHDAL 168
Query: 179 ADVYA 183
+DV A
Sbjct: 169 SDVEA 173
>gi|292493403|ref|YP_003528842.1| exonuclease RNase T and DNA polymerase III [Nitrosococcus
halophilus Nc4]
gi|291581998|gb|ADE16455.1| Exonuclease RNase T and DNA polymerase III [Nitrosococcus
halophilus Nc4]
Length = 183
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
+ + D E G D D + A V D IE VF
Sbjct: 5 PPNLIWLDLEMSGLDTTQDVILEIATVVTDSDLNIIEEGPVF 46
>gi|269137702|ref|YP_003294402.1| hypothetical protein ETAE_0344 [Edwardsiella tarda EIB202]
gi|267983362|gb|ACY83191.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
gi|304557757|gb|ADM40421.1| Oligoribonuclease [Edwardsiella tarda FL6-60]
Length = 181
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D DR + A + D +
Sbjct: 8 LIWIDLEMTGLDPQRDRIIEIATLVTDADLNVLAE 42
>gi|300781383|ref|ZP_07091237.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
33030]
gi|300533090|gb|EFK54151.1| DNA polymerase III subunit epsilon [Corynebacterium genitalium ATCC
33030]
Length = 233
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 47/218 (21%), Positives = 69/218 (31%), Gaps = 57/218 (26%)
Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDY 51
M F + +D ET + R A VR+D E + V D
Sbjct: 8 MAATFNASRMLSFDLETTSANPREARIVTSALVRIDGSSMTATETLADPGV-------DI 60
Query: 52 LPDPE-AVFITGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
PE A I GIT +KA +G E I Q + T ++ N +D
Sbjct: 61 ---PEQAARIHGITTEKARAEGRPHDDVLQETVAAIKQAWDEGLTLVV--FNAPYDLSVL 115
Query: 107 R-----NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
R +D L+D Y R G + L
Sbjct: 116 RALTGDFTVTGPVFDPL------------LIDRAMDRY-----------RKGGKRN--LG 150
Query: 162 DLALANGIEHVNAHDAKADVYATLALV-WLIREKKPKL 198
L+ G+ NAH+A +D A + + + P+L
Sbjct: 151 ALSEFYGVRLDNAHEATSDATAAARIAWKQVNKVWPQL 188
>gi|330965973|gb|EGH66233.1| oligoribonuclease [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 178
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
+ + D E G D D + A + D + + V +D+ L D
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQ 64
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
G + Q+ + AE + +F + C N+I D R YR
Sbjct: 65 HGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICG---NSICQD----RRFLYR 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
+ +W + + D+ + ++P+ G+T L D+
Sbjct: 118 HM--PTLENWFHYRN-LDVSTLKELAARWAPEL----KFKKGSTHLALDDI 161
>gi|282878677|ref|ZP_06287446.1| exonuclease [Prevotella buccalis ATCC 35310]
gi|281299222|gb|EFA91622.1| exonuclease [Prevotella buccalis ATCC 35310]
Length = 284
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+++D ET G D+ DR Q + ++V ++ E P + + A+ TGIT
Sbjct: 9 IIVFDLETTGLDLVKDRIIQISYIKVFPDGKE--ERENILVNPEKNIPLEVSAL--TGIT 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ D + ++++ + F GYN+ FD F R D
Sbjct: 65 NEDV-ADAPKFQDIAQKLAEEF--KGCDFAGYNSNHFDIPILAEEFLRAGID 113
>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type)
[Lactobacillus casei str. Zhang]
Length = 1444
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 27/198 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +V++D ET G D+ + A V++ + + I+ E + + +T
Sbjct: 418 SAEYVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEEM---IDPGFPLSELTINLT 473
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + E + ++ Q F ++G+N + FD + N + R+
Sbjct: 474 HIT-DDMVHGSKSEVDVF-KLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI--- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
DN ++D + P+ + KL LA + + H A AD
Sbjct: 527 -DNP-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANADA 570
Query: 182 YATLALVWLIREKKPKLF 199
AT L++ + ++ K++
Sbjct: 571 EATGYLLYALEKEAAKMY 588
>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus casei LC2W]
gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus casei BD-II]
Length = 1444
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 27/198 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +V++D ET G D+ + A V++ + + I+ E + + +T
Sbjct: 418 SAEYVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEEM---IDPGFPLSELTINLT 473
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + E + ++ Q F ++G+N + FD + N + R+
Sbjct: 474 HIT-DDMVHGSKSEVDVF-KLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI--- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
DN ++D + P+ + KL LA + + H A AD
Sbjct: 527 -DNP-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANADA 570
Query: 182 YATLALVWLIREKKPKLF 199
AT L++ + ++ K++
Sbjct: 571 EATGYLLYALEKEAAKMY 588
>gi|168032166|ref|XP_001768590.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680089|gb|EDQ66528.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 180
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYL 52
M V D E G D+ DR + A + D + + +E + +P +D L
Sbjct: 1 MQMPLVWIDLEMSGLDIEKDRILEIACIVTDGKLEKIVEGPVIVISQP-EDVL 52
>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
casei ATCC 334]
Length = 1444
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 27/198 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +V++D ET G D+ + A V++ + + I+ E + + +T
Sbjct: 418 SAEYVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEEM---IDPGFPLSELTINLT 473
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + E + ++ Q F ++G+N + FD + N + R+
Sbjct: 474 HIT-DDMVHGSKSEVDVF-KLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI--- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
DN ++D + P+ + KL LA + + H A AD
Sbjct: 527 -DNP-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANADA 570
Query: 182 YATLALVWLIREKKPKLF 199
AT L++ + ++ K++
Sbjct: 571 EATGYLLYALEKEAAKMY 588
>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 1437
Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 27/198 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ +V++D ET G D+ + A V++ + + I+ E + + +T
Sbjct: 411 SAEYVVFDVETTGLSAVYDKVIELAAVKM-KDGKVIDQFEEM---IDPGFPLSELTINLT 466
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + E + ++ Q F ++G+N + FD + N + R+
Sbjct: 467 HIT-DDMVHGSKSEVDVF-KLFQQFCD-GAIMVGHN-VTFDVGFLDNGYERHGLADI--- 519
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
DN ++D + P+ + KL LA + + H A AD
Sbjct: 520 -DNP-----VIDTLELSRMLHPE----------RKNHKLDTLAKQYKVSLEHHHRANADA 563
Query: 182 YATLALVWLIREKKPKLF 199
AT L++ + ++ K++
Sbjct: 564 EATGYLLYALEKEAAKMY 581
>gi|255633388|gb|ACU17051.1| unknown [Glycine max]
Length = 242
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 45/208 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFF-----C--KPADDYLPDPE 56
V D E G ++ +DR + A + D + +ES ++ C + +
Sbjct: 61 LVWIDLEMTGLNIEVDRILEIACIITDGNLTKTVESPDLVIHQTKECLDRMGEWCQSHHA 120
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRNIFY 111
A +G+T +K L+ + E E ++ +F T + N+I D F
Sbjct: 121 A---SGLT-KKVLKSTISEGEAEEQVIEFVKRYVNVGSYTPHLAGNSIYVD-----FQFL 171
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ + + + +L + ++ A I+W +D KL
Sbjct: 172 KKYMPKLASLFSH------VLVDVSSVKAL---CIRWYPKDQKRAPSKL----------- 211
Query: 172 VNAHDAKADVYATLALVWLIREK--KPK 197
N H A D+ ++ + + KPK
Sbjct: 212 -NRHRALDDIRESIEEIRYYKANIFKPK 238
>gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
Length = 246
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET G + R A V V AD +P PE A I GI+
Sbjct: 12 FDLETTGTEPGESRIVTAAVVEVRG-----GEVRERRGWLADPGIPIPEQASAIHGISTA 66
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+A+ +G E ++ + ++ YN FD R+ S
Sbjct: 67 RAVAEGRPVREVAQEVAAALVEHWRRGAVVVAYNA-AFDLTLLSAELARHGLPSL 120
>gi|113868667|ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16]
gi|113527443|emb|CAJ93788.1| Oligoribonuclease (3'->5' exoribonuclease) [Ralstonia eutropha
H16]
Length = 208
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G DR + A V D + +
Sbjct: 14 NNLIWLDMEMTGLQPDTDRIIEIAIVVTDSELNILAE 50
>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
KF147]
gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
KF147]
Length = 1638
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 67/208 (32%), Gaps = 37/208 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + Q A ++ + I+ + F Y +TG
Sbjct: 594 STYVVFDVETTGLSAVHNDLIQIAATKMHKG-NPIDEFDEF---INPGYRLSEFTTELTG 649
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ E + Q F T ++ +N FD + + RN
Sbjct: 650 ITDDHV-KNAKPLYEVLTK-FQKFC-EGTILVAHNA-TFDVGFMNMNYSRNGL-PIITQ- 703
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D + P+ F L L I + H A D
Sbjct: 704 -------PVVDTLEFARNLYPE----------MKRFGLGQLTKKFQIGLEHHHMANFDAE 746
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
AT L LF +L + R +N
Sbjct: 747 ATGRL----------LFVFLEELRTRNT 764
>gi|229512381|ref|ZP_04401856.1| oligoribonuclease [Vibrio cholerae TMA 21]
gi|229526905|ref|ZP_04416308.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
gi|229526997|ref|ZP_04416393.1| oligoribonuclease [Vibrio cholerae 12129(1)]
gi|262172561|ref|ZP_06040239.1| oligoribonuclease [Vibrio mimicus MB-451]
gi|229335520|gb|EEO01001.1| oligoribonuclease [Vibrio cholerae 12129(1)]
gi|229336074|gb|EEO01093.1| oligoribonuclease [Vibrio cholerae bv. albensis VL426]
gi|229350596|gb|EEO15541.1| oligoribonuclease [Vibrio cholerae TMA 21]
gi|261893637|gb|EEY39623.1| oligoribonuclease [Vibrio mimicus MB-451]
Length = 181
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + V E E + F C N+I D R Y+
Sbjct: 66 HTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
Length = 1434
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 44/199 (22%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP---ADDYLPDPEAVFI 60
+V++D ET G D+ + A V+V + E I+ E F P ++ + + +
Sbjct: 417 TYVVFDVETTGLSSQYDKIIELAAVKV-KDGEIIDKFE-RFSNPGERLNETIKN-----L 469
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-----YNNIRFDDYYSRNIFYRNFY 115
TGIT + +E+ + F +G +N FD + F R Y
Sbjct: 470 TGITDDMLIDAPPIES-----VLNDFKD----FVGDAIYVAHNASFDMGFIDTGFDRLGY 520
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
N D L++ R I G L LA G+E H
Sbjct: 521 GPTE------NGVIDTLELSRT--------INTEMGKHG-----LNFLAKKYGVELTQHH 561
Query: 176 DAKADVYATLAL-VWLIRE 193
A D T + V ++++
Sbjct: 562 RAIYDAETTAHIFVKMLKQ 580
>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
Length = 1638
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 67/208 (32%), Gaps = 37/208 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + Q A ++ + I+ + F Y +TG
Sbjct: 594 STYVVFDVETTGLSAVHNDLIQIAATKMHKG-NPIDEFDEF---INPGYRLSEFTTELTG 649
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ E + Q F T ++ +N FD + + RN
Sbjct: 650 ITDDHV-KNAKPLYEVLTK-FQKFC-EGTILVAHNA-TFDVGFMNMNYSRNGL-PIITQ- 703
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D + P+ F L L I + H A D
Sbjct: 704 -------PVVDTLEFARNLYPE----------MKRFGLGQLTKKFQIGLEHHHMANFDAE 746
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
AT L LF +L + R +N
Sbjct: 747 ATGRL----------LFVFLEELRTRNT 764
>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
Il1403]
Length = 1658
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 67/208 (32%), Gaps = 37/208 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + Q A ++ + I+ + F Y +TG
Sbjct: 614 STYVVFDVETTGLSAVHNDLIQIAATKMHKG-NPIDEFDEF---INPGYRLSEFTTELTG 669
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ E + Q F T ++ +N FD + + RN
Sbjct: 670 ITDDHV-KNAKPLYEVLTK-FQKFC-EGTILVAHNA-TFDVGFMNMNYSRNGL-PIITQ- 723
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D + P+ F L L I + H A D
Sbjct: 724 -------PVVDTLEFARNLYPE----------MKRFGLGQLTKKFQIGLEHHHMANFDAE 766
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
AT L LF +L + R +N
Sbjct: 767 ATGRL----------LFVFLEELRTRNT 784
>gi|118497560|ref|YP_898610.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
novicida U112]
gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
novicida FTE]
gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112]
gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
novicida FTE]
Length = 230
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + + A+ I G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYEV--EAGALAIHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 62 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 117
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 118 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 163
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 164 LLADVYLAM 172
>gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 1434
Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 70/194 (36%), Gaps = 32/194 (16%)
Query: 5 FVIYDYETFGRDVA----------LDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDY-L 52
++I D ET G ++ R QF+ + + + F KP D Y +
Sbjct: 2 YLIVDTETTGLPISYNFSITHTDNWPRIVQFS--WQNHDILGDLIEFKNFIIKP-DHYDI 58
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
P A I GIT +KA + GV + + C+IG+N + FD F R
Sbjct: 59 PF-NAFKIHGITNEKAEKYGVDLSFVLCEFRKSLEKSQ-CLIGHN-LEFDKKVIECEFLR 115
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAF--SPDGIQWPSRDDGATSFKLQDLALANGIE 170
S+ D ++ + + +WP+ S Q L +
Sbjct: 116 ---KKIEISFKKK-KILDTKEISVSYCKLPGNRKKFKWPT-----LSELYQKLFEE---K 163
Query: 171 HVNAHDAKADVYAT 184
N HDA DV AT
Sbjct: 164 IPNLHDAANDVKAT 177
>gi|170724006|ref|YP_001751694.1| exonuclease RNase T and DNA polymerase III [Pseudomonas putida
W619]
gi|169762009|gb|ACA75325.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
W619]
Length = 236
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 33/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D ET G + D+ V IE + F + + L P +V I G+
Sbjct: 45 DLETSGLNPNRDQVLSIGAV-------AIEDGAIDFSQQFERTLHRPAQKTNASVLIHGL 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P AL G AE + +F + F + + + R ++
Sbjct: 98 GPS-ALAAGSDPAEALLELLEFIGDSP-------VLAFHAPFDQRMLARALKETLGHRLQ 149
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
LDV +PD + R+ G L D G++ H A AD
Sbjct: 150 -----LPFLDVAELAPMLNPDTV---LREAG-----LDDWVARFGLQVDERHHASADAQV 196
Query: 184 TLALVWLIREK 194
T L ++ +
Sbjct: 197 TAELALILFSQ 207
>gi|33519554|ref|NP_878386.1| oligoribonuclease [Candidatus Blochmannia floridanus]
gi|77416670|sp|Q7VQP7|ORN_BLOFL RecName: Full=Oligoribonuclease
gi|33517217|emb|CAD83599.1| oligoribonuclease [Candidatus Blochmannia floridanus]
Length = 180
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + DR + A + D + +
Sbjct: 4 DNLIWIDLEMTGLNPERDRILEIATLITDNELSILSE 40
>gi|325271243|ref|ZP_08137788.1| oligoribonuclease [Pseudomonas sp. TJI-51]
gi|324103646|gb|EGC00948.1| oligoribonuclease [Pseudomonas sp. TJI-51]
Length = 180
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 42/203 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
+ + D E G D D + A + D + + V +D+ L D
Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFY 111
G + Q+ V AE + F C N+I D R Y
Sbjct: 64 THGASGLTQRVRDSKVGMAEAEAQTIAFLEQWVPKGKSPICG---NSICQD----RRFLY 116
Query: 112 RNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
R+ + + + N D+ + ++PD SFK
Sbjct: 117 RHMRNLENYFHYRN----LDVSTLKELAARWAPDV---------RDSFK----------- 152
Query: 171 HVNAHDAKADVYATLALVWLIRE 193
N H A D+ ++A + RE
Sbjct: 153 KGNTHLALDDIRESIAELRHYRE 175
>gi|152975987|ref|YP_001375504.1| DNA polymerase III subunit epsilon [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152024739|gb|ABS22509.1| DNA polymerase III, epsilon subunit [Bacillus cytotoxicus NVH
391-98]
Length = 299
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 38/188 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ ++V+ D+ET G DR Q A VR ++ V F P +P
Sbjct: 6 LPANYVVIDFETTGFHPYNDRIIQVAAVRYRN--HELADQFVSFVNPERS-IPSRITSL- 61
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI-----RFDDYYSRNIFYRNFY 115
TGIT + V +A + + F +G + I FD + ++ R
Sbjct: 62 TGITNYR-----VSDAPTVQEVLPLFL----AFLGNDTIVAHNASFDMRFLKSNMSRFQL 112
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ N D + + + +P+ FKL+ L GI + H
Sbjct: 113 ------GEPNNKVIDTVLLAKKYMKHAPN-------------FKLETLKRMLGIRLSS-H 152
Query: 176 DAKADVYA 183
+A D
Sbjct: 153 NALDDCIT 160
>gi|261364839|ref|ZP_05977722.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
gi|288566880|gb|EFC88440.1| oligoribonuclease [Neisseria mucosa ATCC 25996]
Length = 182
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
N+ D E G D +R + A + D + +EV+ +D+ L D
Sbjct: 5 ANNLCWLDMEMTGLDPERERIIEVAMIITDSDLNVLAQSEVYVVHQSDELLDGMDEWNTA 64
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP 89
G T ++ + EAE +++ F +
Sbjct: 65 THGRTGLTRRVRESQLTEAEVEQKLLDFIAQW 96
>gi|119776164|ref|YP_928904.1| oligoribonuclease [Shewanella amazonensis SB2B]
gi|166216584|sp|A1SA28|ORN_SHEAM RecName: Full=Oligoribonuclease
gi|119768664|gb|ABM01235.1| oligoribonuclease [Shewanella amazonensis SB2B]
Length = 181
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +DR + A + D+ + V +D+ L
Sbjct: 5 AKNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVL 55
>gi|78047756|ref|YP_363931.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325928670|ref|ZP_08189846.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
91-118]
gi|123585062|sp|Q3BTI2|ORN_XANC5 RecName: Full=Oligoribonuclease
gi|78036186|emb|CAJ23877.1| oligoribonuclease [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325540966|gb|EGD12532.1| oligoribonuclease (3'->5' exoribonuclease) [Xanthomonas perforans
91-118]
Length = 194
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
+ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETL----EAMDE 63
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ L V A+ + F S C N+I D
Sbjct: 64 WNRNQHRRSGLW-QRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCG---NSICQD---- 115
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P ++A
Sbjct: 116 RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP--------------------SVA 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 153 NGFAKSSAHTALSDVRDSIDELRHYRQ 179
>gi|309972889|gb|ADO96090.1| Oligoribonuclease [Haemophilus influenzae R2846]
Length = 182
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +R + A + D+ + V D+ L
Sbjct: 6 QNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELL 55
>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
17241]
gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
17241]
Length = 1445
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 29/185 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G A +R + V++ R E ++ F + P+ +TGIT
Sbjct: 427 IVFDLETTGLSAATERITEIGAVKL-RNGEIVDRFNTF---VNPERSIPPKITELTGIT- 481
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+R +E E R+ + F + +I +N FD + R R +
Sbjct: 482 DDDVRGAPLEGEALRQFYAFCGGSSAVLIAHNA-PFDTSFLRQCARRCGMEYNFT----- 535
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
+D + + P+ + KL +A G+ N H A D
Sbjct: 536 -----AIDTVVLSRSLFPELKK----------HKLDIVAKHLGLGEFNHHRACDDAEM-- 578
Query: 186 ALVWL 190
L +
Sbjct: 579 -LARI 582
>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
Length = 663
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFI 60
+V++D ET G D + A V++ + IES + F P + V +
Sbjct: 426 TYVVFDVETTGLSAVYDTIIELAAVKMYKG-NVIESFDEF---IDPG---HPLSRTTVDL 478
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + G E R+ FS +T ++ +N FD + + R
Sbjct: 479 TGIT--DGMVRGSKSEEEVLRMFLEFSK-DTILVAHNA-AFDMGFLNTSYARYGIPEAA- 533
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N ++D + P F L L+ G+ H A D
Sbjct: 534 ---NP-----VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHRAIYD 575
Query: 181 VYATLALVWLI 191
AT L W+
Sbjct: 576 AEATGHLAWIF 586
>gi|152978666|ref|YP_001344295.1| oligoribonuclease [Actinobacillus succinogenes 130Z]
gi|171704275|sp|A6VN13|ORN_ACTSZ RecName: Full=Oligoribonuclease
gi|150840389|gb|ABR74360.1| Exonuclease RNase T and DNA polymerase III [Actinobacillus
succinogenes 130Z]
Length = 182
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D +R + A + D+ +
Sbjct: 6 ENLIWIDLEMTGLDPEQERIIEIATIVTDKNLNILAE 42
>gi|307131423|ref|YP_003883439.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
gi|306528952|gb|ADM98882.1| ribonuclease T (RNase T) [Dickeya dadantii 3937]
Length = 225
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + + T F +P + + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAVTLKMDESGWLQP-DETLHFHIEPFEGAILRPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + N II +N FD + R RN
Sbjct: 82 PANPLRGAVSEYEALHEIFKAVRKGIKDLNCNRGIIVAHNATFDHSFLMAAAERCGLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|158424105|ref|YP_001525397.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
gi|158330994|dbj|BAF88479.1| putative exonuclease [Azorhizobium caulinodans ORS 571]
Length = 334
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 47/203 (23%), Positives = 69/203 (33%), Gaps = 33/203 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
VI D ET G D D + V R+ I F + +P P +TGI
Sbjct: 83 VIVDTETTGLDHTRDEVIELGMVAFTYREGGAIGDVVDTFSALREPTVPISPVITKLTGI 142
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TP+ + E + R F P + +I +N RFD + ++ + S
Sbjct: 143 TPEMVAGQSID-LEAAAR----FIQPASIVIAHNA-RFDRPFCEHLVEGFDVKPWACS-- 194
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++ P D G KL L G+ H N H A D +A
Sbjct: 195 ---------------------VVEVPWADFGFEGTKLGYLIGQCGMFH-NGHRAVDDCHA 232
Query: 184 TLA-LVWLIREKKPKLFEYLYDY 205
L L ++E F L +
Sbjct: 233 LLEVLAAPLKEATGTAFGRLLET 255
>gi|89094643|ref|ZP_01167580.1| oligoribonuclease [Oceanospirillum sp. MED92]
gi|89081113|gb|EAR60348.1| oligoribonuclease [Oceanospirillum sp. MED92]
Length = 186
Score = 45.6 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G + A D + A + D +
Sbjct: 10 NNLIWIDLEMTGLEPATDVIIEIATIVTDSDLNVLAE 46
>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
Length = 1442
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 34/188 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVF 59
+ F+++D ET G D+ + V++ + E I++ F C+
Sbjct: 427 DTFIVFDIETTGFSAKNDKIIEIGAVKI-KGREVIDTFSEFVYPKCRIPYKI------TE 479
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGIT + +E + I F ++ +N FD + + +
Sbjct: 480 LTGITDEIVQDADPIEVVLPKFI--EFID-GCAVVAHNA-AFDTGFIKKNC-----NDLG 530
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ NS ++D + P+ + KL +A G+ N H A
Sbjct: 531 LEF---NST--IVDTVPLARFLYPELKRV----------KLNLVAKHLGVSLENHHRAVD 575
Query: 180 DVYATLAL 187
D AT +
Sbjct: 576 DAKATAEI 583
>gi|282598821|ref|YP_003359140.1| putative exonuclease [Clavibacter phage CMP1]
gi|262212609|gb|ACY35945.1| putative exonuclease [Clavibacter phage CMP1]
Length = 236
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 51/199 (25%), Positives = 74/199 (37%), Gaps = 40/199 (20%)
Query: 8 YDYETFGRDVALDRPAQ-FAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITP 65
+D ET G DV DR F G+ +D + + P +P PE A I GIT
Sbjct: 10 FDTETSGVDVENDRIVTAFIGL-MDPD-GTMTEFHEWLIDPG---IPIPEGASDIHGITT 64
Query: 66 QKALRDGVVEAE-FSRRIHQFF---SVPN-TCII---GYNNIRFDDYYSRNIFYRNFYDS 117
+KA +G + + I S N +I Y+ D R++ +NF
Sbjct: 65 EKAHAEGRKDIDKALMEIATKLDYASRWNYPVVIMNAPYDLTILDRELRRHVGIKNFRAP 124
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176
N D + + +Y F S KL DLA G+ NAHD
Sbjct: 125 --------NVVLDTFVIDKKLYTFR------------KGSRKLVDLARIYGVPVEENAHD 164
Query: 177 AKADVYATLALVWLIREKK 195
A+AD + + K+
Sbjct: 165 AQADCR----MAGRVTLKQ 179
>gi|305682188|ref|ZP_07404992.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
gi|305658661|gb|EFM48164.1| exonuclease [Corynebacterium matruchotii ATCC 14266]
Length = 230
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 46/223 (20%), Positives = 69/223 (30%), Gaps = 49/223 (21%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET + R A V +D + F AD +P PE A + GIT +
Sbjct: 16 FDLETTSANPFEARIVTSALVHIDSGG---AHPQEF---LADPGVPIPEAATKVHGITTE 69
Query: 67 KALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
A G AE I + ++ T I+ N +D + +
Sbjct: 70 YAREHGSPHADVLAETIAAIRKAWTDGYTLIV--YNASYDLTVL-----HSLEPGFL--- 119
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + Y D + P R T L L + NAH+A +D
Sbjct: 120 --------ITGPVYDPYVM--DKLLDPYRRGKRT---LTALCEEYQVRLENAHEATSDAL 166
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
A I K+ K + I Q M L+
Sbjct: 167 A----AARIAWKQ-----------AKKRFASQISPQTMEQLME 194
>gi|237710744|ref|ZP_04541225.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
gi|229455466|gb|EEO61187.1| DNA Pol III epsilon chain [Bacteroides sp. 9_1_42FAA]
Length = 260
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 49/208 (23%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVF 59
+ N V +D ET G ++ DR + ++V + E + + +P+ ++
Sbjct: 7 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNSNE----ETKTMRINPEMHIPE-QSSA 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 62 IHGIY-DADVADCPTFKEVAKEIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 115
Query: 120 WSWDNGNSRWDLLDV----MRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GI 169
D++ ++ IY KL+ L+ A G
Sbjct: 116 ---------IDMMKRKFIDVQVIYH------------------KLEQRTLSAAYKFYCGK 148
Query: 170 EHVNAHDAKADVYATLALVWLIREKKPK 197
+AH A+AD AT ++ ++ P+
Sbjct: 149 NLEDAHTAEADTRATYEVLKSQLDRYPE 176
>gi|56707679|ref|YP_169575.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670150|ref|YP_666707.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|134301975|ref|YP_001121944.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis WY96-3418]
gi|224456748|ref|ZP_03665221.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis
FSC033]
gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis
FSC033]
gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis NE061598]
Length = 230
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + + A+ I G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYEV--EAGALAIHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 62 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 117
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 118 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 163
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 164 LLADVYLAM 172
>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
Length = 1437
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 27/200 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKVKGG-EIIDKFEAFA---NPHRPLSATIIELTG 474
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + I F I+ +N FD + N+ Y+ + +
Sbjct: 475 ITDDMLQDA----PDVVDVIRDFREWIGDDILVAHNASFDMGFL-NVAYKKLLEVDKA-- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 528 KNP-----VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDTE 572
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT L+ ++++ K +Y
Sbjct: 573 ATAYLLLKMLKDAAEKGIQY 592
>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
Length = 1437
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 27/200 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKVKGG-EIIDKFEAFA---NPHRPLSATIIELTG 474
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + I F I+ +N FD + N+ Y+ + +
Sbjct: 475 ITDDMLQDA----PDVVDVIRDFREWIGDDILVAHNASFDMGFL-NVAYKKLLEVDKA-- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 528 KNP-----VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDTE 572
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT L+ ++++ K +Y
Sbjct: 573 ATAYLLLKMLKDAAEKGIQY 592
>gi|254372051|ref|ZP_04987544.1| oligoribonuclease [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375197|ref|ZP_04990677.1| oligoribonuclease [Francisella novicida GA99-3548]
gi|151569782|gb|EDN35436.1| oligoribonuclease [Francisella novicida GA99-3549]
gi|151572915|gb|EDN38569.1| oligoribonuclease [Francisella novicida GA99-3548]
gi|328676136|gb|AEB27006.1| Oligoribonuclease [Francisella cf. novicida Fx1]
Length = 178
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFF 44
++ + D E G DV + + A + D+ I +
Sbjct: 4 ADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIY 48
>gi|254469279|ref|ZP_05082684.1| exonuclease, DNA polymerase III, epsilon subunit family
[Pseudovibrio sp. JE062]
gi|211961114|gb|EEA96309.1| exonuclease, DNA polymerase III, epsilon subunit family
[Pseudovibrio sp. JE062]
Length = 471
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 65/210 (30%), Gaps = 37/210 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVF-IT 61
FV++D ET G D Q VRV I T P P P A +
Sbjct: 278 SFVVFDTETTGLMPNKDEIVQIGAVRV-VNRRIIPGETVDQLVNPGR---PIPAASTGVH 333
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + + + H F+ + +N FD + + + +
Sbjct: 334 RIT-DDMVVNAPDPVTATSDFH-VFAKDAVIVA--HNAPFDMAFLQRYGHMSG-----HV 384
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA--HDAKA 179
WD+ +LD + + + L L IE A H A
Sbjct: 385 WDHP-----ILDTVLLSAVV--------FGAEQEHT--LDALCARLDIEIPEALRHTALG 429
Query: 180 DVYATL-ALVWLIREKKPKLFEYLYDYRNK 208
D AT AL L+ P L +D K
Sbjct: 430 DAQATAQALCKLL----PILTSRGFDTFGK 455
>gi|325854302|ref|ZP_08171501.1| exonuclease [Prevotella denticola CRIS 18C-A]
gi|325484096|gb|EGC87030.1| exonuclease [Prevotella denticola CRIS 18C-A]
Length = 284
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+T V++D ET G D+ DR Q + ++V ++ E F P P P E
Sbjct: 5 LTKPLVVFDLETTGLDLVNDRIIQISFIKVLPDGKE--ERENIFINPEK---PIPTEVTQ 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ K + D + ++ + F+ G+N+ RFD F R D
Sbjct: 60 LTGIS-DKDVADAPTFRQKAKELADRFT--GCDFAGFNSNRFDVPMLAEEFLRAGVD 113
>gi|294789770|ref|ZP_06755000.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
gi|294482276|gb|EFG29973.1| oligoribonuclease [Simonsiella muelleri ATCC 29453]
Length = 184
Score = 45.6 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ D E G + D+ + A + D + +EV+ +D+ L
Sbjct: 5 NNLCWLDMEMTGLNPDSDKIIEIAMIITDSNLNVLAQSEVYAIHQSDEIL 54
>gi|319950859|ref|ZP_08024742.1| DNA polymerase III [Dietzia cinnamea P4]
gi|319435472|gb|EFV90709.1| DNA polymerase III [Dietzia cinnamea P4]
Length = 313
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 50/176 (28%), Gaps = 30/176 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G A+DR A V + E +E DP V + G+TP
Sbjct: 8 DVETSGMTPAVDRVLSVAAVVIGDDGEVVEEFATL---LNPGV--DPGPVHVHGLTPALL 62
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-NFYDSYRWSWDNGNS 127
++ + + + T + +N FD + R
Sbjct: 63 AGKPRF-SDVAAELGRVLDG-RTVVA--HNAAFDASFLAAEARRAGLAPPLER----FVC 114
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D + A KL LA G+ AHDA D A
Sbjct: 115 TLDFAGRLHLSTAD----------------LKLSTLAAHFGVRQRAAHDAHDDALA 154
>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM
2522]
gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
2522]
Length = 1434
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 28/195 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ ++++D ET G + + A V+V + E ++ E F P + +
Sbjct: 416 LDETYIVFDVETTGLSAVYNTIIELAAVKV-KNGEIVDRFESFA---NPHEKLTPLIIDL 471
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGIT + + E + + + T + +N FD + F + Y
Sbjct: 472 TGITDD--MVENAPEVDDVLKDFHEWIGDATLVA--HNASFDMGFINAGFQKIGY----- 522
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
G++ ++D + P +++L L IE V H A D
Sbjct: 523 ----GHATNPVIDTLELGRLLYPT----------FKNYRLNTLCKKFNIELVAHHRAIYD 568
Query: 181 VYATLALV-WLIREK 194
AT L+ ++++
Sbjct: 569 AEATGHLLWKMVKDA 583
>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
Length = 1439
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 38/226 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
FV++D ET G DR + V+V + E I+ VF P D P E +TGI
Sbjct: 426 FVVFDIETTGFSSQNDRIIEIGAVKV-KNGEIIDEFSVF-VNPQKDI---PLEITELTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
A+ + + F V + ++ +N FD + + +N+ D+
Sbjct: 481 DNYMVKD-----AKTIDIVIKEFYDFVDGSILVAHNA-AFDTSFIK----KNYLDN-DLE 529
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++ + ++D + P + +KL + GI +N H A D
Sbjct: 530 FN-----YPIMDTIPLCKYLYPALNK----------YKLNVICKYLGITLLNHHRAVDDA 574
Query: 182 YATLALVWLIREKKPKLFE-YLYDYRNKNQLRKLIDIQNMTPLVHV 226
AT + + + +L + + N+ K P+ H+
Sbjct: 575 KAT---AMVFLKAQEELRSREIIKLSDLNKEYKQTQDIKKLPMNHI 617
>gi|257463061|ref|ZP_05627463.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium sp. D12]
Length = 129
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 23/122 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +D ET G Q A + +D +++ T + P D EA+ +T +
Sbjct: 3 ILYFDTETTGL-TYRSTIIQLAAIIEIDG---EVKETVNLYSAPFPDSDISEEALAVTKL 58
Query: 64 TPQKALRDGVVEA--EFSRRI----------HQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
T ++ R + E +I + F+ +G+N ++FD RN Y
Sbjct: 59 TREEIFRFDSPQLTCEMFTQILGKYVDKYNKNDKFTA-----VGHN-VKFDLDMLRNWAY 112
Query: 112 RN 113
R
Sbjct: 113 RC 114
>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
Length = 1443
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 38/226 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
FV++D ET G DR + V+V + E I+ VF P D P E +TGI
Sbjct: 430 FVVFDIETTGFSSQNDRIIEIGAVKV-KNGEIIDEFSVF-VNPQKDI---PLEITELTGI 484
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
A+ + + F V + ++ +N FD + + +N+ D+
Sbjct: 485 DNYMVKD-----AKTIDIVIKEFYDFVDGSILVAHNA-AFDTSFIK----KNYLDN-DLE 533
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++ + ++D + P + +KL + GI +N H A D
Sbjct: 534 FN-----YPIMDTIPLCKYLYPALNK----------YKLNVICKYLGITLLNHHRAVDDA 578
Query: 182 YATLALVWLIREKKPKLFE-YLYDYRNKNQLRKLIDIQNMTPLVHV 226
AT + + + +L + + N+ K P+ H+
Sbjct: 579 KAT---AMVFLKAQEELRSREIIKLSDLNKEYKQTQDIKKLPMNHI 621
>gi|269955496|ref|YP_003325285.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
cellulosilytica DSM 15894]
gi|269304177|gb|ACZ29727.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
cellulosilytica DSM 15894]
Length = 247
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 23/116 (19%)
Query: 8 YDYETFGRDVALDRPAQFA------GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+D ET G DVA DR A GV D + ++ PA EA I
Sbjct: 21 FDTETTGVDVANDRIVTAAVVLRIPGVSTDVRTWLVDPGVEI---PA-------EAAAIH 70
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNN----IRFDDYYSRNIF 110
G+T + A GV A I + ++ YN D +R+
Sbjct: 71 GVTTEHARAHGVAPAVALEEIAAELAAHLREGVPVVAYNAAFDLSLLDAELARHGL 126
>gi|262374958|ref|ZP_06068192.1| oligoribonuclease [Acinetobacter lwoffii SH145]
gi|262309971|gb|EEY91100.1| oligoribonuclease [Acinetobacter lwoffii SH145]
Length = 185
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M++ + D E G D D+ + A + D +
Sbjct: 1 MSSTADTRLIWIDLEMTGLDTDNDQIIEIATIVTDDNLNILAE 43
>gi|284040773|ref|YP_003390703.1| exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
74]
gi|283820066|gb|ADB41904.1| Exonuclease RNase T and DNA polymerase III [Spirosoma linguale DSM
74]
Length = 270
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 57/193 (29%), Gaps = 47/193 (24%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-----ESTEVFFCKPADDYLPDP-EAV 58
+D ET G ++A DR I + +P P E+
Sbjct: 11 LAFFDLETTGINIAKDRII---------DICIIKALPGGEVITKNQRVHPG-MPIPLESS 60
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I GI + R F + G+N RFD F R D
Sbjct: 61 LIHGIYDDDVQD--APPFKTVARTLAQFLD-GCDLAGFNCNRFDVPLLVEEFLRANVD-- 115
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSP----DGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+D N R L+D R + P ++ D V A
Sbjct: 116 ---FDMKNRR--LVDAQRIFHLMEPRNLSAAYKFYCNKD-----------------LVGA 153
Query: 175 HDAKADVYATLAL 187
H A+AD ATL +
Sbjct: 154 HGAEADTIATLEV 166
>gi|13097555|gb|AAH03502.1| REXO2 protein [Homo sapiens]
Length = 79
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M V D E G D+ D+ + A + D +
Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAE 77
>gi|72160587|ref|YP_288244.1| DNA polymerase III subunit epsilon [Thermobifida fusca YX]
gi|71914319|gb|AAZ54221.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
Length = 250
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G ++ DR A + + PEAV I GI+ +
Sbjct: 19 FDIETTGINLEQDRVVTAAIIETAADGSQRTRRTWL---VNPGVEIPPEAVAIHGISTEL 75
Query: 68 ALRDGVVEAEFSRRIHQFFSV 88
A+ DG+ I
Sbjct: 76 AVADGIPAPVAVAEITDLLEQ 96
>gi|89255617|ref|YP_512978.1| oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
gi|134302673|ref|YP_001122642.1| oligoribonuclease [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156501565|ref|YP_001427630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167010118|ref|ZP_02275049.1| oligoribonuclease [Francisella tularensis subsp. holarctica
FSC200]
gi|187932223|ref|YP_001892208.1| oligoribonuclease [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254367012|ref|ZP_04983048.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
gi|254368614|ref|ZP_04984630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
FSC022]
gi|290953723|ref|ZP_06558344.1| oligoribonuclease [Francisella tularensis subsp. holarctica
URFT1]
gi|295312909|ref|ZP_06803630.1| oligoribonuclease [Francisella tularensis subsp. holarctica
URFT1]
gi|122501292|sp|Q2A5M3|ORN_FRATH RecName: Full=Oligoribonuclease
gi|166216258|sp|A7N9M1|ORN_FRATF RecName: Full=Oligoribonuclease
gi|166216260|sp|A4J020|ORN_FRATW RecName: Full=Oligoribonuclease
gi|89143448|emb|CAJ78624.1| Oligoribonuclease [Francisella tularensis subsp. holarctica LVS]
gi|134050450|gb|ABO47521.1| exonuclease [Francisella tularensis subsp. tularensis WY96-3418]
gi|134252838|gb|EBA51932.1| oligoribonuclease [Francisella tularensis subsp. holarctica 257]
gi|156252168|gb|ABU60674.1| oligoribonuclease [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157121517|gb|EDO65708.1| oligoribonuclease [Francisella tularensis subsp. holarctica
FSC022]
gi|187713132|gb|ACD31429.1| oligoribonuclease (3'->5' exoribonuclease) [Francisella
tularensis subsp. mediasiatica FSC147]
Length = 178
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ + D E G DV + + A + D+ I E D+ L
Sbjct: 4 ADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVL 54
>gi|210620723|ref|ZP_03292209.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
gi|210155224|gb|EEA86230.1| hypothetical protein CLOHIR_00152 [Clostridium hiranonis DSM 13275]
Length = 179
Score = 45.6 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 26/190 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F++ D ET G + G+ R + + + F KP + +P P +TGI+
Sbjct: 13 FIVVDLETTGLNPFEGNEIIEIGITEIRNGKIV-RSYSRFVKPEQE-IP-PFITELTGIS 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + +E R + F NT I +N +FD + + + +
Sbjct: 70 NEMVANEDTIEQVLPR--FRKFIGSNTIIA--HNAKFDIKFLNYYLNKLGLEEI----KD 121
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+LL + + G + KL GIE+ NAH A +D AT
Sbjct: 122 YICTLELLKKVSSY---------------GGKNKKLATACEYYGIENKNAHRASSDTQAT 166
Query: 185 LALVWLIREK 194
L IR+K
Sbjct: 167 AELFLKIRDK 176
>gi|320535302|ref|ZP_08035422.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Treponema phagedenis F0421]
gi|320147834|gb|EFW39330.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Treponema phagedenis F0421]
Length = 216
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 61/184 (33%), Gaps = 29/184 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
F +D ET G D + G++ D + I + P PE V + I
Sbjct: 15 FTAFDTETTGLKQEEDSVVEIGGIKFDHR-GVIARFNIL---INPGK-PMPEDVTAVNNI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T F+ I F + T ++ +N FD + N R
Sbjct: 70 TDAMLADKPP----FNAVIPDFLRFIKKTVLVAHNA-PFDIGFINNELKRCKKPPLT--- 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P G ++LQ+LAL GI + AH A+ D
Sbjct: 122 ---NK---VIDTLVLAQEVFPGL--------GKHQYRLQNLALQFGITALEAHRAEDDSR 167
Query: 183 ATLA 186
+
Sbjct: 168 VCME 171
>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
Length = 255
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 1 MTNHFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
M+ +I D ET G DR +FAG+ + + + + P D +P+ EA
Sbjct: 16 MSKRQIILDTETTGLYAEGGDRLVEFAGLEM-INRQITGNNLHLYVHPERD-MPE-EAAK 72
Query: 60 ITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ G+T + AE R+I F II +N +FD + F R S
Sbjct: 73 VHGLTIEVLEEKNAPPFAEVGRQIAD-FIRDAELII--HNAKFDVGFLNMEFRRMGLPSI 129
Query: 119 RWSWDNGNSRWDLLDVMR 136
+ G + D L + R
Sbjct: 130 E---ELGCTVTDTLAMAR 144
>gi|226939937|ref|YP_002795010.1| DNA polymerase III subunit epsilon [Laribacter hongkongensis HLHK9]
gi|226714863|gb|ACO74001.1| Probable DNA polymerase III [Laribacter hongkongensis HLHK9]
Length = 202
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 20/173 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET +V VR+ R +I ++E + ++LP P +V + G+ P
Sbjct: 33 DCETTSLNVREAELLSIGAVRIRRG--RILASESLYLLVRPEHLPAPGSVVVHGLRPSD- 89
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
L DG+ A+ R+ F ++GY + +D +
Sbjct: 90 LSDGLAPADAVSRLLDFIG--GRALVGY-YLEYDVAVL-----NKYVKPLTGITLPQRQ- 140
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++V Y + DG +L+++ + + HDA D
Sbjct: 141 ---IEVSGLYYDWR-----LKQTPDGYVDLRLEEILKTLDLPRMGRHDALTDA 185
>gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
Length = 862
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLETFERF---INPG-VPVGQSEEVHGFSD 550
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--FYDSYRWSWD 123
G E + + FS N I+G+N + +D N R+ ++
Sbjct: 551 AYLQEHGE-EPAIVLQAFKEFSK-NAIIVGHN-VNYDVTIFTNELARHNLGNPEFKAI-- 605
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D LD+ R Y P+ + KL LA I H H+A D+ A
Sbjct: 606 -----YDTLDIYRRFY---PNL----------PNHKLGFLASEFPIHHEPTHNAMDDILA 647
Query: 184 TLAL 187
T L
Sbjct: 648 TAQL 651
>gi|146284105|ref|YP_001174258.1| oligoribonuclease [Pseudomonas stutzeri A1501]
gi|166216582|sp|A4VR15|ORN_PSEU5 RecName: Full=Oligoribonuclease
gi|145572310|gb|ABP81416.1| oligoribonuclease [Pseudomonas stutzeri A1501]
gi|327482422|gb|AEA85732.1| oligoribonuclease [Pseudomonas stutzeri DSM 4166]
Length = 180
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D Q + V +D+ L
Sbjct: 4 PQNLIWIDLEMTGLDPDNDVIIEMATIVTDSQLNVLAEGPVIAVHQSDEVL 54
>gi|115314122|ref|YP_762845.1| oligoribonuclease [Francisella tularensis subsp. holarctica
OSU18]
gi|122325833|sp|Q0BNX6|ORN_FRATO RecName: Full=Oligoribonuclease
gi|115129021|gb|ABI82208.1| oligoribonuclease [Francisella tularensis subsp. holarctica
OSU18]
Length = 178
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ + D E G DV + + A + D+ I E D+ L
Sbjct: 4 ADNLIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVL 54
>gi|300933650|ref|ZP_07148906.1| DNA polymerase III subunit epsilon [Corynebacterium resistens DSM
45100]
Length = 226
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 44/205 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGV------RVDRQWEKIESTEVFFCKPADDYLPDPEA 57
+ + +D ET G D R A + R D++ + V +P+ +A
Sbjct: 12 NMLSFDLETTGTDPKTCRIVTSAMISIEGRERKDQEL--LADPGVE--------IPE-QA 60
Query: 58 VFITGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+ GIT + A +G A+ I + + T ++ YN +D R
Sbjct: 61 TAVHGITTEYARENGSPHDEVLAQTIETIREAWQRGATLVV-YNA-PYDLSVLRA----- 113
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
S+ + D + A P G +L+++ GIE N
Sbjct: 114 LEPSFTVDGL-------VFDPLVVDRAMDP-------YRKGKR--RLENVCEHYGIELTN 157
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH+A AD A + W + +K P+L
Sbjct: 158 AHEATADAVAAARVAWKLAKKYPQL 182
>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
prausnitzii L2-6]
Length = 1417
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 35/197 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++D ET G D ++ + V V R E +E + F KP + +TGIT
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIV-RNGEVVEEFDTF-VKPGKPITS--KITELTGIT 452
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDSYRWSW 122
+ + D EAE + F ++G+N FD + R R+ ++
Sbjct: 453 -NEMVADAPSEAEALKAFLDFVD--GRILVGHNAHSFDIRFLRAAAKRSGIEFEPTY--- 506
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D + A P G ++K + + AH A D
Sbjct: 507 ---------IDTLTMAQAMYP----------GLHNYKQGTINKHLELPAYEAHRACEDSA 547
Query: 183 AT----LALVWLIREKK 195
A ++ + EK+
Sbjct: 548 ALGRIFCVMLKDLEEKQ 564
>gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
6_1_27]
gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
6_1_27]
Length = 862
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSEEVHGFSD 550
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--FYDSYRWSWD 123
G E + + FS N I+G+N + +D N R+ ++
Sbjct: 551 AYLQEHGE-EPAIVLQAFKEFSK-NAIIVGHN-VNYDVTIFTNELARHNLGNPEFKAI-- 605
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D LD+ R Y P+ + KL LA I H H+A D+ A
Sbjct: 606 -----YDTLDIYRRFY---PNL----------PNHKLGFLASEFPIHHEPTHNAMDDILA 647
Query: 184 TLAL 187
T L
Sbjct: 648 TAQL 651
>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
brevis ATCC 367]
Length = 1445
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 27/181 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + + V+++ Q ++ E F + + +T I
Sbjct: 424 TYVVFDVETTGLSAIYDKVIELSAVKMEHQ-NVVDQFEEF---IDPGFPLSEQTTNLTSI 479
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T E F ++ + F + I+G+N + FD + + R+
Sbjct: 480 TDDMVAGSKSEEEVF--KLFREFCG-DAIIVGHN-VTFDVGFMNTGYQRHGMAEIS---- 531
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P S++L LA + + H A D +
Sbjct: 532 NP-----IIDTLTLARFLYPTL----------KSYRLNTLAKRFHVSLEHHHRAVYDAES 576
Query: 184 T 184
T
Sbjct: 577 T 577
>gi|296392793|ref|YP_003657677.1| exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
DSM 44985]
gi|296179940|gb|ADG96846.1| Exonuclease RNase T and DNA polymerase III [Segniliparus rotundus
DSM 44985]
Length = 202
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT--- 61
+ D E G D+ + A + D + I+ +D L +
Sbjct: 8 LLWVDCEMTGLRPGFDQLIEIAALVTDGELNIIDDGIDLVIHAEEDKLAQMDEYVTNMHA 67
Query: 62 --GITPQ-KALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
G+T +A + EAE + + F P T I+ N+I D +
Sbjct: 68 SSGLTEAVRASELSLAEAEERVLAYVKERFPAPRTAILAGNSIATDRSFL 117
>gi|197334850|ref|YP_002157125.1| oligoribonuclease [Vibrio fischeri MJ11]
gi|197316340|gb|ACH65787.1| oligoribonuclease [Vibrio fischeri MJ11]
Length = 181
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 49/203 (24%), Gaps = 44/203 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D Q + E K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQPEEELAKMDDWC--- 62
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIF 110
+ E F + G N+I D R
Sbjct: 63 -TNTHTNSGLVARVQESKYNEEAAIAETIAFLEQWVPKGVSPICG-NSIGQD----RRFL 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
Y++ + + D+ + + P+ L A
Sbjct: 117 YKHM--PTLEEYFHY-RYVDVSTIKELARRWKPEV--------------LDGFTKAG--- 156
Query: 171 HVNAHDAKADVYATLALVWLIRE 193
H A D+ ++A + R+
Sbjct: 157 ---THLALDDIRESIAELKYYRQ 176
>gi|160878305|ref|YP_001557273.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
ISDg]
gi|160426971|gb|ABX40534.1| DNA polymerase III, epsilon subunit [Clostridium phytofermentans
ISDg]
Length = 235
Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 30/201 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITG 62
+F+ D E+ G DR + A +R + F K + P PE + +TG
Sbjct: 2 NFLAIDIESTGLSPEKDRIIEIAAIR-----YIDGKPKERFEKLINPGCPLPERITELTG 56
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + L + E E + F+ + ++G+N + D F + D + +
Sbjct: 57 IT-EDMLAGAMTEREVIKEFL-TFAGED-VLLGHN-VSVD-----FSFIKTAADRLKIGY 107
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ +D + D + L+ + GI +H A D
Sbjct: 108 ERQ-----GIDTLYLSRTLKSDL------EKKN----LESMCEHYGIIRECSHRALEDAI 152
Query: 183 ATLALVWLIREKKPKLFEYLY 203
A L + E+ FE L+
Sbjct: 153 AAATLYQKLYEEFNNNFEALF 173
>gi|326800451|ref|YP_004318270.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
21]
gi|326551215|gb|ADZ79600.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
21]
Length = 330
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 31/192 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
+D ET G +VA DR + + ++ S +V + + +P P + + G+
Sbjct: 9 LAFFDLETTGVNVASDRIVEISILKAMPD----GSEQVKTMRINPE-MPIPLSSSLLHGV 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ ++D + ++ I F T + GYN+ +FD F R ++
Sbjct: 64 Y-DEDIKDAPTFKQVAQEIADFLED--TDLAGYNSNKFDIPVLMEEFLRAGI-NFDIENR 119
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+DV + ++ + + NAH A+ADV A
Sbjct: 120 K------FVDVQNIFHQMEQRTLKAAYKFYCDRTL-------------ENAHSAEADVRA 160
Query: 184 TLALVWLIREKK 195
T + L+ + +
Sbjct: 161 TYEV--LLAQVQ 170
>gi|300949122|ref|ZP_07163165.1| exonuclease [Escherichia coli MS 116-1]
gi|300451432|gb|EFK15052.1| exonuclease [Escherichia coli MS 116-1]
Length = 199
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D+ DR + A + D +
Sbjct: 24 NNLIWIDLEMTGLDLERDRIIEIATLVTDANLNILAE 60
>gi|83814553|ref|YP_445082.1| exonuclease, putative [Salinibacter ruber DSM 13855]
gi|83755947|gb|ABC44060.1| exonuclease, putative [Salinibacter ruber DSM 13855]
Length = 249
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 42/189 (22%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK------IESTEVFFCKPADDYLPDPEAV 58
V +D E G D R Q R + ++ T P ++ P AV
Sbjct: 8 LVFFDLEATGTDPQAARIIQIGMQR----FVPSGDGAALDETIDVLVDPQEEI---PAAV 60
Query: 59 F-ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD- 116
+TG++P + + A RI + + + GYN + +D + F R+
Sbjct: 61 TDLTGLSPDAVRQAPPLGAHL-DRIAPLLADAD--LAGYNALAYDIPLLQAEFERHGRTL 117
Query: 117 --SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+LD R P + S + G +A
Sbjct: 118 PGPDDRV---------VLDPYRLEQVLRPRTL----------SALYERYT---GDALDDA 155
Query: 175 HDAKADVYA 183
HDA +DV A
Sbjct: 156 HDALSDVEA 164
>gi|219852875|ref|YP_002467307.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
palustris E1-9c]
gi|219547134|gb|ACL17584.1| Exonuclease RNase T and DNA polymerase III [Methanosphaerula
palustris E1-9c]
Length = 193
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 39/122 (31%), Gaps = 14/122 (11%)
Query: 5 FVIYDYETFGRDVA----------LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++ +D ET G R + V D + IE + +P +P
Sbjct: 2 YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLL-VRPDGFSVPA 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
E+ I GIT ++A G +E R I G+ + FD R
Sbjct: 61 -ESTAIHGITTEQATEQGSAISEVLARFLLALEQSE-LICGH-QVSFDHRVVGAELIRAG 117
Query: 115 YD 116
Sbjct: 118 MP 119
>gi|85058292|ref|YP_453994.1| oligoribonuclease [Sodalis glossinidius str. 'morsitans']
gi|123520179|sp|Q2NW86|ORN_SODGM RecName: Full=Oligoribonuclease
gi|84778812|dbj|BAE73589.1| putative oligoribonuclease [Sodalis glossinidius str. 'morsitans']
Length = 181
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 34/191 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYLPDPEAVFI 60
N+ + D E G D DR + A + D + + A L + V
Sbjct: 6 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLAILAEGPVLAIYQSDAQLALMNDWNVRT 65
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVPNTCI---IGYNNIRFDDYYSRNIFYRNFY 115
+ + + + E + F + I N+I D R +R +
Sbjct: 66 HTASGLVDRVRQSALDEEAAVAQTLAFLADWVPAGKSPICGNSIGQD----RRFLFR-YM 120
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ + D+ + + P+ + G++ N H
Sbjct: 121 PALEAYFHY--RYLDVSTLKELARRWKPEILS--------------------GLKKNNTH 158
Query: 176 DAKADVYATLA 186
A D+ ++A
Sbjct: 159 QALDDIRESVA 169
>gi|313108556|ref|ZP_07794557.1| putative nuclease [Pseudomonas aeruginosa 39016]
gi|310881059|gb|EFQ39653.1| putative nuclease [Pseudomonas aeruginosa 39016]
Length = 208
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 29/195 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET D V V R + + +P D E++ I +
Sbjct: 36 DLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRADL 93
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY----SRNIFYRNFYDSYRWSWDN 124
+E + R++ F ++GY + FD R +F R ++
Sbjct: 94 EGQLQLE-QALRQLLAFIGDRP--LLGY-YLSFDVAVLNRHLRQLFDRQLHNPS------ 143
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+++ + +P D + LA A + H A D A
Sbjct: 144 -------IEISSLYH--RKVSRHFP---DAHIDLRFDTLARALDVPVSGRHTALGDAQAV 191
Query: 185 LAL-VWLIREKKPKL 198
+ + L++ PK+
Sbjct: 192 ALMFMRLLKGPAPKV 206
>gi|213964467|ref|ZP_03392667.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
SK46]
gi|213952660|gb|EEB64042.1| DNA polymerase III subunit epsilon [Corynebacterium amycolatum
SK46]
Length = 226
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 30/194 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D + A VR + +P A + GIT +K
Sbjct: 12 FDLETTGTDPRTCKIVTSALVR----LTEQGKDSTIMLADPGVEIPQ-AASDVHGITTEK 66
Query: 68 ALRDGVVEAE-FSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
A +G E + I + ++ YN +D R+ +
Sbjct: 67 ARAEGRPHDEVLADTIAGLKAAWRDGLTVVAYNA-AYDLTVLRS--------------QD 111
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N D L P + D L D++ + AHDA D A
Sbjct: 112 PNFTVDGL-------VVDPFVLDNYFDPDRREKRTLTDVSRHYQVRLDGAHDATEDALAA 164
Query: 185 LALVWLIREKKPKL 198
+ W++ +L
Sbjct: 165 ARIAWVMARHYREL 178
>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
Length = 231
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD F Y+ N+
Sbjct: 55 MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-KADNAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|116515288|ref|YP_802917.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|116257142|gb|ABJ90824.1| oligoribonuclease [Buchnera aphidicola str. Cc (Cinara cedri)]
Length = 181
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
+ + D ET G + + + + + + D+ +E
Sbjct: 5 NENLIWVDLETTGLNPKIHKIIEISTIITDKNLNILE 41
>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners UPII 143-D]
gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners UPII 143-D]
Length = 1416
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 399 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 454
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 455 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 504
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 505 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 551
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 552 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 580
>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
Length = 1424
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|291234393|ref|XP_002737131.1| PREDICTED: Three prime repair exonuclease 2-like [Saccoglossus
kowalevskii]
Length = 598
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 43/227 (18%)
Query: 3 NHFVIYDYETFGR------DVALDRPAQFA----GVRVDRQWEKIESTEVFFCKPADDYL 52
N FV D ET + A A + + ++ V P D +
Sbjct: 153 NSFVFMDLETTTLIQYNKPLPKITEIALVAVSREALMTEGDIRIVDK-LVMCVDPLDQIV 211
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRI--HQFFSV--PNTCIIGYNNIRFDDYYSRN 108
P A +TG++ + + + + QFF P C+I +N +FD R+
Sbjct: 212 --PIASQMTGLSNESLQLHNKQTFDVNVMVALRQFFKRQIPPICMIAHNGNKFDFPILRD 269
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLL--DVMRAIYAFSPDGIQW--------PSRDDGATSF 158
R + D+L D ++A + + P R G +
Sbjct: 270 ELLRV------------RGQLDILCGDTLQAFIEIRDEEERTAFSNYYSSPMRQKGDLTL 317
Query: 159 KLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDY 205
K G + ++AH A++D +AL+ +++++ L +
Sbjct: 318 K-SLHQKYLGSQFLSAHCAESDA---IALMKIVQKQHHTLLRWFDRN 360
>gi|47214707|emb|CAG01060.1| unnamed protein product [Tetraodon nigroviridis]
Length = 228
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 45/198 (22%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
V +D ET G D Q A V + P P P A +TG
Sbjct: 13 LVFFDLETTGLGSTCD-IIQLAAVSGGHSLN-------LYVVPRR---PLQPGAAKVTGF 61
Query: 64 TP---------QKALRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
Q + + E F R +H + I+G+N RFD +
Sbjct: 62 RVRRRRLYLHRQLVPTNSLREVLVSFIAFLRMLH------HPLIVGHNIRRFDGPLLGRV 115
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
+ D R +++ + W +D + R +F+ + L
Sbjct: 116 L--DELD-LRTQFESSVTGW--VDTLSLAQEL--------LRGHNLQNFRQETLVRELLG 162
Query: 170 EHVNAHDAKADVYATLAL 187
AHDA DV A AL
Sbjct: 163 LDYRAHDALQDVRALQAL 180
>gi|89072943|ref|ZP_01159490.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
gi|89051161|gb|EAR56617.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
Length = 249
Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 56/196 (28%), Gaps = 34/196 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA------V 58
FV D+ET G + D V + FCK + ++ P+A V
Sbjct: 59 FVALDFETTGLNANKDDIISVGLV----PFNI----NRIFCKQSQHWVVKPKAKLDEDSV 110
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNI--RFDDYYSRNIFYRN 113
I GIT RRI + ++ Y I +F D R
Sbjct: 111 IIHGITHSDVQTAPD-----IRRILEAVLDSLAGKVVVVHYKAIERQFMDKALRVRLNEG 165
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
D L + I G + S +L + G+
Sbjct: 166 IQFPV----------VDTLALESHIQTQQYSGFLARLKGKKPGSVRLGKCRIRYGLPAYQ 215
Query: 174 AHDAKADVYATLALVW 189
H A D AT L+
Sbjct: 216 PHHALTDALATAELLQ 231
>gi|238917782|ref|YP_002931299.1| DNA polymerase [Eubacterium eligens ATCC 27750]
gi|238873142|gb|ACR72852.1| DNA polymerase [Eubacterium eligens ATCC 27750]
Length = 233
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 31/192 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-DDYLPDPEAVF 59
M N +V D ET G + A+DR + RV+ +
Sbjct: 1 MINRYVALDIETTGLNPAVDRIIEVGMARVED-----GQITQKYSTLVYPGISVSERITE 55
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI ++ +E + I +F ++G+N I FD + + N
Sbjct: 56 LTGIHNEELTGKPRIE-DIIGEITEFIGDWP--VLGHNVI-FDFSFLKKAAVNNGL---- 107
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D+G +D ++ P+ + + SF L I+ +H A
Sbjct: 108 TINDDG------IDTLKLARRILPEV------EHKSLSF----LCQYFNIDPGRSHRAYD 151
Query: 180 D-VYATLALVWL 190
D V A+L L
Sbjct: 152 DAVSASLLYAKL 163
>gi|332373288|gb|AEE61785.1| unknown [Dendroctonus ponderosae]
Length = 220
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G +V D+ + A + D +
Sbjct: 42 AERLVWIDMEMTGLNVDQDKIMEVACIVTDTDLNIVAE 79
>gi|148982513|ref|ZP_01816787.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
gi|145960438|gb|EDK25820.1| oligoribonuclease [Vibrionales bacterium SWAT-3]
Length = 169
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 40/194 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIATIVTDSELNILAEGPVLAIHQPQSELDKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
++ V E + + F C N+I D R Y+
Sbjct: 66 HTGSGLVKRIQESTVTEQDAIEQTIAFLEKWVPKGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + D+ + + P+ + G
Sbjct: 119 HM--PELEEYFHY-RYVDVSTLKELARRWKPEVLD--------------------GFSKS 155
Query: 173 NAHDAKADVYATLA 186
+H A D+ ++A
Sbjct: 156 GSHLALDDIRESIA 169
>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners UPII 60-B]
gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners UPII 60-B]
Length = 1424
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|320536084|ref|ZP_08036140.1| exonuclease [Treponema phagedenis F0421]
gi|320147069|gb|EFW38629.1| exonuclease [Treponema phagedenis F0421]
Length = 190
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 39/201 (19%)
Query: 4 HFVIYDYETFGRDV----ALDRPAQFAG---VRVDR--QWEKIESTEVFFCKPADDYLPD 54
+ + D ET G + A + FAG V +R + + + +
Sbjct: 2 NTIWCDTETTGLEPENSGAFEIAFIFAGKGKVTCERLFKLNPLNE-TILY---------H 51
Query: 55 PEAVFITGITPQKALRDGVVE------AEFSRR-IHQFFSVPNTCIIGYNNIRFDDYYSR 107
EA G++ ++ E A F ++ IH F GYN FD +
Sbjct: 52 EEAAKTHGVSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYN-CNFDYRHLE 110
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+F R + + ++D L+ ++ A I P ++ KL + +
Sbjct: 111 ALFNRCGLTLADY----FSKQFDALEFVKK--ATRQKAI--PRLEN----LKLGTVCKSL 158
Query: 168 GIEHVNAHDAKADVYATLALV 188
G+ NAH A AD+ AT AL
Sbjct: 159 GVNLENAHTALADIQATRALC 179
>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners SPIN 2503V10-D]
gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners SPIN 2503V10-D]
Length = 1424
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC
33386]
Length = 1421
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 34/185 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
++I+D ET G D D+ + V++ + I+ F + +P PE + +T
Sbjct: 397 EEYIIFDIETTGFDPYKDKIIEIGAVKL-KGRNIIDRFSAFV----NPEVPIPEEIIKLT 451
Query: 62 GITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
IT D V +AE + +F C + +N +FD +
Sbjct: 452 NIT-----DDMVKDAELIDTVLPRFLEFCGDCTMVAHNAKFDVGFL-------------- 492
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSR-DDGATSFKLQDLALANGIEHVNAHDAKA 179
+ + L + D + W F L+ LA I N H A
Sbjct: 493 TQKARQLELEFLPSVI-------DTLYWARVLITDLKRFNLKALANYFNISLDNHHRAVD 545
Query: 180 DVYAT 184
D AT
Sbjct: 546 DAEAT 550
>gi|217970407|ref|YP_002355641.1| oligoribonuclease [Thauera sp. MZ1T]
gi|217507734|gb|ACK54745.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
Length = 182
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 16/51 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ D E G + DR + A V D E I V D L
Sbjct: 5 PKTLIWLDMEMTGLEPDRDRIIEIAIVLTDEALEVIAEAPVIAVHQPDSVL 55
>gi|167581087|ref|ZP_02373961.1| oligoribonuclease [Burkholderia thailandensis TXDOH]
Length = 201
Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 60/210 (28%), Gaps = 58/210 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + + V +D+ L A
Sbjct: 19 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL----AKMDDWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EA+ + +I F P + N+I D
Sbjct: 75 KNTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWMPE 134
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREK 194
G + H A AD++ ++ + RE+
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRER 189
>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners SPIN 1401G]
gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners SPIN 1401G]
Length = 1424
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 3008A-a]
gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 2062A-h1]
gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 2062A-h1]
gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 3008A-a]
Length = 1420
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 459 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 508
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 509 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 555
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 556 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 584
>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 2052A-d]
gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 2052A-d]
Length = 1420
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 459 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 508
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 509 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 555
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 556 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 584
>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 2053A-b]
gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LEAF 2053A-b]
Length = 1424
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners
AB-1]
gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
Length = 1420
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 459 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 508
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 509 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 555
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 556 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 584
>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
824]
gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
824]
gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
2018]
Length = 1452
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 36/191 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFI 60
+ + D ET G ++ + G+ + I+ +F KP + V +
Sbjct: 426 TTYCVLDLETTGFSPKTEKITEI-GIMKYENGKVIDKFSLFVNPEKPIPARV-----VEV 479
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T IT D V AE ++ + ++ +N FD F ++
Sbjct: 480 TNIT-----DDMVKNAETIDKVFPKMLEFIKGSVLVAHNA-SFD-----IGFLKHNAKVL 528
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ +D + LD + A P S+KL +A GI+ AH A
Sbjct: 529 GYEFD-----FTYLDTLSLAQAVFPQ----------YKSYKLGRIAKNLGIKVEVAHRAL 573
Query: 179 ADVYATLALVW 189
DV T+ +
Sbjct: 574 DDVDTTVKVFK 584
>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
Length = 231
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD F Y+ N+
Sbjct: 55 MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-KADNAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 1443
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 32/182 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAG-VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ ++D ET G D +F G + D + F KP +T
Sbjct: 395 TYCVFDLETTGLSSRFDHIIEFGGQIMKD---RTCIKSLQLFVKPP--IALSAFTTELTN 449
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I+ ++ +++ AE I +F I+ +N FD + R
Sbjct: 450 IS-EENMKNAKPFAECVDEILEFIGDS---ILVAHNASFDYGFLNAELERIGRKPLM--- 502
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKAD 180
N D LD+ R++ G ++L +LA GI + AH A D
Sbjct: 503 ---NPVIDTLDLARSM-----------MDRKG---YRLGNLARQYGIRYDEDVAHRADYD 545
Query: 181 VY 182
Sbjct: 546 AE 547
>gi|156546675|ref|XP_001603963.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
Length = 185
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 29/133 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFI 60
+ + D E G +V D+ + A + D Q + + ++ + E VF
Sbjct: 9 ADRIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQM--------VIHQSEDVFE 60
Query: 61 TGITP---QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T I P ++ + G++EA + ++ + ++ R F+R +
Sbjct: 61 TMI-PWCQEQHNKTGLIEASRNSIFNEEMA--------------EEELIR--FFRKYVPH 103
Query: 118 YRWSWDNGNSRWD 130
D
Sbjct: 104 NTCPLAGSCLYMD 116
>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
Length = 231
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD F Y+ N+
Sbjct: 55 MVKGSDPIDVVLKQFREWSGDDILVA--HNASFD-----MGFINTAYEKVGLEKAK-NAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|110678446|ref|YP_681453.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
gi|109454562|gb|ABG30767.1| exonuclease, putative [Roseobacter denitrificans OCh 114]
Length = 465
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D ET G D D Q VRV + I EVF P + + I
Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRV-VNGKII-EGEVFDTLVNPGRTIPPGSTAVHQI 329
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
+ A+ + + R F+ + I+ +N FD + R
Sbjct: 330 S--DAMVADAPGFDVACRAFHQFA-EHAVIVAHNA-PFDMAFLRRQC 372
>gi|296118714|ref|ZP_06837290.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
gi|295968203|gb|EFG81452.1| oligoribonuclease [Corynebacterium ammoniagenes DSM 20306]
Length = 222
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D + A + D + I
Sbjct: 23 LVWIDLEMTGLDPKRHTIVEIAAIITDAELNVIGE 57
>gi|281424378|ref|ZP_06255291.1| exonuclease [Prevotella oris F0302]
gi|281401647|gb|EFB32478.1| exonuclease [Prevotella oris F0302]
Length = 286
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQ-WEKIESTEVFFCKPADDYLPDPEAVFITGI 63
V++D ET G D+ DR Q + ++V E+ + K D + +TGI
Sbjct: 9 LVVFDLETTGLDIVNDRIIQLSFIKVCPDGTEERGDHLINPGKHIPDMVSA-----LTGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ ++D + S + + F G+N+ RFD F R D
Sbjct: 64 D-DEKVKDAPSFKQLSATLAEKF--KGCDFAGFNSNRFDVPMLAEEFLRAGID 113
>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
pumilus ATCC 7061]
gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
pumilus ATCC 7061]
Length = 1437
Score = 45.2 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 27/195 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ E I+ E F + + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKIKGG-EIIDRFEAFA---NPHHPLSATTIELTGI 475
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T ++D + R ++ I+ +N FD + N Y+ + + S
Sbjct: 476 T-DDMVKDAPDVVDVVRDFKEWIGQD---ILVAHNASFDMGFL-NTAYKRLLKTDKASNP 530
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++D + P+ + +L L IE H A D A
Sbjct: 531 -------VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDAEA 573
Query: 184 T-LALVWLIREKKPK 197
T ++ ++++ K
Sbjct: 574 TGYLMLKMLKDAAEK 588
>gi|167837413|ref|ZP_02464296.1| oligoribonuclease [Burkholderia thailandensis MSMB43]
Length = 201
Score = 45.2 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 58/210 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G DR + A V + + V +D+ L A
Sbjct: 19 NLVWLDMEMTGLSPDTDRIIEIAVVVTNSTLDIALEGPVLAIHQSDETL----AKMDDWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EA+ + +I F P + N+I D
Sbjct: 75 KNTHGRSGLIDRVRASSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWMPE 134
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREK 194
G + H A AD++ ++ + RE+
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRER 189
>gi|330984568|gb|EGH82671.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 178
Score = 45.2 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 28/173 (16%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--------- 53
+ + D E G D +D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDIDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQ 64
Query: 54 DPEAVFITGI---TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
+ + T A + EF + S P I G N+I D R
Sbjct: 65 HGGSGLTQRVRESTISMAEAEAHT-LEFIKLWVPERSSP---ICG-NSICQD----RRFL 115
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
YR+ +W + + D+ + +SP+ G+T L D+
Sbjct: 116 YRHM--PTLENWFHYRN-LDVSTLKELAARWSPEL----KFKKGSTHLALDDI 161
>gi|254884285|ref|ZP_05256995.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
gi|254837078|gb|EET17387.1| DNA Pol III epsilon chain [Bacteroides sp. 4_3_47FAA]
Length = 260
Score = 45.2 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 49/208 (23%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVF 59
+ N V +D ET G ++ DR + ++V + E + + +P+ ++
Sbjct: 7 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPE-QSSA 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 62 IHGIY-DADVADCPTFKEVAKEIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 115
Query: 120 WSWDNGNSRWDLLDV----MRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GI 169
D++ ++ IY KL+ L+ A G
Sbjct: 116 ---------IDMMKRKFIDVQVIYH------------------KLEQRTLSAAYKFYCGK 148
Query: 170 EHVNAHDAKADVYATLALVWLIREKKPK 197
+AH A+AD AT ++ ++ P+
Sbjct: 149 NLEDAHTAEADTRATYEVLKSQLDRYPE 176
>gi|303236025|ref|ZP_07322628.1| exonuclease [Prevotella disiens FB035-09AN]
gi|302483898|gb|EFL46890.1| exonuclease [Prevotella disiens FB035-09AN]
Length = 284
Score = 45.2 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +++D ET G D+ DR Q + ++V ++ E + P + +P E V +
Sbjct: 5 LTKPLIVFDLETTGLDLVKDRIIQISYIKVSPNGDE--ERENLYINPEKE-IPK-EVVEL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
TGI+ V A ++ + + G+N+ RFD F R D
Sbjct: 61 TGISDAD-----VASAPTFKQKAKELADKFIGCDFAGFNSNRFDVPMLAEEFLRAGVD 113
>gi|297584389|ref|YP_003700169.1| DnaQ family exonuclease/DinG family helicase [Bacillus
selenitireducens MLS10]
gi|297142846|gb|ADH99603.1| DnaQ family exonuclease/DinG family helicase [Bacillus
selenitireducens MLS10]
Length = 935
Score = 45.2 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 32/188 (17%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAVF 59
N +VI D ET G DR Q A +V E ++ + + KP ++
Sbjct: 2 NRYVILDLETTGVAYDKGDRIIQIA-YQVLEDQEVLKRFSTYINYDKPVPAFIQS----- 55
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGI+ + + E E + I + +N + FD + + D+
Sbjct: 56 LTGISGEHLKNAPLFE-EVAPEILSDLEE--AYFVAHN-VEFDLKF----LNESLEDAGY 107
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
S+ ++D + I PS D S++L DLA H H A +
Sbjct: 108 ASFQGP-----VIDTVELAR------ICLPSED----SYRLSDLAKTVQATHTAPHQADS 152
Query: 180 DVYATLAL 187
DV AT AL
Sbjct: 153 DVEATRAL 160
>gi|85059419|ref|YP_455121.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
gi|84779939|dbj|BAE74716.1| ribonuclease T [Sodalis glossinidius str. 'morsitans']
Length = 234
Score = 45.2 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + D W + +ST F P L PEA+ GI P
Sbjct: 23 DVETAGFNAVTDALLEIAAVTLKMDDDGWLQADSTLHFHVDPFPGALLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFD-----DYYSRNIFYRNF 114
LR V E E I + N II +N FD SR RN
Sbjct: 83 HNPLRGAVGEYEALHEIFKMVRKGIKDQGCNRAIIVAHNAAFDHGFLMAAVSRAGLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|159484124|ref|XP_001700110.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272606|gb|EDO98404.1| predicted protein [Chlamydomonas reinhardtii]
Length = 398
Score = 45.2 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 20/150 (13%)
Query: 36 KIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
+++ +P +P +AV I GI+ Q+A ++G+ + + N +I
Sbjct: 256 ELQEHGYRIVRPVGFVIPA-DAVQIHGISTQRATQEGLPLDQVLDELMSAIQRWNCGVIV 314
Query: 96 YNNIRFDDYYSRNIFYR--NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD 153
+N+++D + YR D R G + Y + ++ + +D
Sbjct: 315 AHNLKYDLNVILSELYRRNRAQDVARLERMEGVCTANCSKFYLGRYHKQAELLKALTDED 374
Query: 154 GATSFKLQDLALANGIEHVNAHDAKADVYA 183
AHDA+ D A
Sbjct: 375 MRV-----------------AHDAECDAEA 387
>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
SAFR-032]
Length = 1437
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 27/195 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ E I+ E F + + +TGI
Sbjct: 420 TYVVFDVETTGLSAVYDTIIELAAVKIKGG-EIIDRFEAFA---NPHHPLSATTIELTGI 475
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T +RD + R ++ I+ +N FD + N Y+ + + S
Sbjct: 476 T-DDMVRDAPDVVDVVRDFKEWIGQD---ILVAHNASFDMGFL-NTAYKRLLKTDKASNP 530
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++D + P+ + +L L IE H A D A
Sbjct: 531 -------VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDAEA 573
Query: 184 T-LALVWLIREKKPK 197
T ++ ++++ K
Sbjct: 574 TGYLMLKMLKDAAEK 588
>gi|66768743|ref|YP_243505.1| hypothetical protein XC_2435 [Xanthomonas campestris pv. campestris
str. 8004]
gi|66574075|gb|AAY49485.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 185
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 33/173 (19%)
Query: 36 KIESTEVFF-CKPADDYL-PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF-----SV 88
IE+ + C+ DP A+ +TG++ ++ R+G+ R + S
Sbjct: 32 VIENPVQTYACELKPTTTQADPAALEVTGLSLERLAREGLAPEVAMREFRTWVLGVCESK 91
Query: 89 PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDL----LDVMRAIYAFSPD 144
+G+N FD + F+R D+ G S D+ + ++ +
Sbjct: 92 GEPVFVGFNA-AFDWSFINYYFHRYLGDNPF-----GFSALDIKSLYMGAVQCAWH---- 141
Query: 145 GIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197
D +S +A + HDA D L +R P
Sbjct: 142 --------DTRSS----QMAKSLQPHLAGNHDAMQDALYQAELFRCVRALTPA 182
>gi|271968895|ref|YP_003343091.1| oligoribonuclease [Streptosporangium roseum DSM 43021]
gi|270512070|gb|ACZ90348.1| putative oligoribonuclease; K01175 [Streptosporangium roseum DSM
43021]
Length = 200
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ V D E G D+ D + A V D + +++ KP + L
Sbjct: 1 MSDLLVWIDCEMTGLDLGRDALVEVACVVTDGELNQLDEGVDVVIKPPPEAL 52
>gi|86130881|ref|ZP_01049480.1| exonuclease [Dokdonia donghaensis MED134]
gi|85818292|gb|EAQ39452.1| exonuclease [Dokdonia donghaensis MED134]
Length = 229
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV++D ET G D DR GV V + T F D+ +P++ I GI
Sbjct: 46 FVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELF--LKQDFY-NPDSAQIHGIL 102
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
Q V E E + F T I+ +++ FD R +
Sbjct: 103 KQGNYLK-VNEKEAIAQCLDFI---GTDILVGHHVGFDVAVVNQSLKRAGLGRLK----- 153
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N + D + + P + P +D T L +LA A I + H A D T
Sbjct: 154 -NRQLDTEILYK--RLVHP--VNRPLQDKRYT---LDELAEALKIPLHDRHTAAGDSLIT 205
Query: 185 -LALVWLIREKK 195
LA + ++ +
Sbjct: 206 ALAFIKIVHKLN 217
>gi|253583228|ref|ZP_04860426.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
ATCC 27725]
gi|251833800|gb|EES62363.1| exonuclease RNase T and DNA polymerase III [Fusobacterium varium
ATCC 27725]
Length = 188
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 20/193 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ D ET G Q +G+ +++ F+ KP EA+ I G T
Sbjct: 3 ILFIDTETGGI-TEKSALIQLSGIVQIG--KEVAEEFNFYVKPFPGSEVTDEALKIQGRT 59
Query: 65 PQKALRDGVVEA---EFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
++ + E +F + +++ + + ++G N+RFD RN + Y
Sbjct: 60 REEIEKYDSEEVVFRKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINKFLRRNG-EKY 118
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+S+ + D L + A+ + P D KL+ GIE + AHD+
Sbjct: 119 LFSYIQA-TTLDPLQWIAALQLLK----KIPVLKDN----KLETWCNHFGIE-LKAHDSL 168
Query: 179 ADVYATLALVWLI 191
D+ AT AL +
Sbjct: 169 EDIKATKALTKKM 181
>gi|146328835|ref|YP_001209227.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
gi|146232305|gb|ABQ13283.1| ribonuclease T [Dichelobacter nodosus VCS1703A]
Length = 206
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 36/193 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIE-----STEVFFCKPADDYLPDPEAVFITGI 63
D ET G D D + A V V + + T + KP + +P+++ I GI
Sbjct: 18 DVETGGFDHEKDALLEVAAVLV--NFNEAGNLAPVETFHYHVKPFEGAHLNPDSLKINGI 75
Query: 64 TPQKALRDGVVEAEFSRRIH---QFFSVPNTCI----IGYNNIRFDDYYSRNIFYRNFYD 116
P LR + E ++++ + + +C +G+N FD + + R
Sbjct: 76 DPFHPLRPALDEVTVAKQLFGAIREYQKAQSCTRSILVGHNA-HFDLGFINALAARC--- 131
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH--VNA 174
+Y+ + + S D + + Y G T L +A A G E+ A
Sbjct: 132 NYQHNPFHPFSSLDTVSLGALAY--------------GQTV--LARIAKAAGFEYDSERA 175
Query: 175 HDAKADVYATLAL 187
H AK D T +
Sbjct: 176 HGAKYDTELTAQI 188
>gi|170723851|ref|YP_001751539.1| oligoribonuclease [Pseudomonas putida W619]
gi|169761854|gb|ACA75170.1| Exonuclease RNase T and DNA polymerase III [Pseudomonas putida
W619]
Length = 180
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 17/124 (13%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
+ + D E G D D + A + D + + V +D+ L D
Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFY 111
G + Q+ V AE + F C N+I D R Y
Sbjct: 64 THGGSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICG---NSICQD----RRFLY 116
Query: 112 RNFY 115
R+
Sbjct: 117 RHMR 120
>gi|294665061|ref|ZP_06730367.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605179|gb|EFF48524.1| oligoribonuclease [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 194
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 50/207 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAV-- 58
+ + D E G D D + A + D Q + E+ P + EA+
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETL----EAMDE 63
Query: 59 ------FITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS 106
+G+ Q+ L V A+ + F C N+I D
Sbjct: 64 WNRNQHRRSGLW-QRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCG---NSICQD---- 115
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R +R + N D+ + ++P +A
Sbjct: 116 RRFLHRQMSR-LERYFHYRN--LDVSTIKELARRWAP--------------------TVA 152
Query: 167 NGIEHVNAHDAKADVYATLALVWLIRE 193
NG +AH A +DV ++ + R+
Sbjct: 153 NGFAKSSAHTALSDVRDSIDELRHYRQ 179
>gi|256377528|ref|YP_003101188.1| exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
43827]
gi|255921831|gb|ACU37342.1| Exonuclease RNase T and DNA polymerase III [Actinosynnema mirum DSM
43827]
Length = 262
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 62/206 (30%), Gaps = 49/206 (23%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--------ADDYLPDPE-AVF 59
D ET + DR A V + + KP AD +P P A
Sbjct: 19 DLETTDVEPRRDRIVT-ASV-------VVITPGAEGAKPDVRVRTWLADPGVPIPASATA 70
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYSRNIFYRN 113
I GI+ ++A +G E + S P N FD R+
Sbjct: 71 IHGISTEQARAEGRPVGEVVAEVEALLAELWTASTPLCAF----NAPFDLTMLDAELLRH 126
Query: 114 FYDSYRWSWDNGNS---RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+G S ++D + A P + G + L + +G+
Sbjct: 127 ----------HGRSLRVSGPVVDPLCVDRALDPRRV-------GKRT--LGAVCEHHGVR 167
Query: 171 HVNAHDAKADVYATLALVWLIREKKP 196
AH + D A L W + P
Sbjct: 168 LEGAHTSAGDALAAARLAWKLARVHP 193
>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
carboxidivorans P7]
gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
carboxidivorans P7]
Length = 1449
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 28/185 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ + D ET G +++ + G+ + + I+ F +P P V +T
Sbjct: 424 TTYCVLDLETTGFSPVIEKITEI-GIMKIKDGKVIDKFSCFVNPKKP--IP-PRVVEVTN 479
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT +E F + + F + + +N FD + ++ R + +++
Sbjct: 480 ITDDMVRDAETIEQVFPKML--DFIKDSVLVA--HNAEFDIGFLKHN-ARVLGYDFDFTY 534
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
LD + PD ++KL +A GI+ AH A DV
Sbjct: 535 ---------LDTLTLAQELFPD----------FKTYKLGRIAKNLGIKVEVAHRALDDVD 575
Query: 183 ATLAL 187
T+ +
Sbjct: 576 TTVKI 580
>gi|156743855|ref|YP_001433984.1| DNA polymerase III subunit epsilon [Roseiflexus castenholzii DSM
13941]
gi|156235183|gb|ABU59966.1| DNA polymerase III, epsilon subunit [Roseiflexus castenholzii DSM
13941]
Length = 232
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 14/180 (7%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + D V +D +++ P DD +PE++ I G+ PQ
Sbjct: 39 DVETTGLNPRRDALLAIGLVEIDEGRIRMDRRWYTLVHPPDDAPINPESIRIHGLLPQDV 98
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
++A + + + +I F R ++ D R
Sbjct: 99 EHAPPLDAVVPDVLRRLTGRVLVVHVADVDIGFLRQAMRRLY---GVDP----------R 145
Query: 129 WDLLDVMRAIYAF-SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
+D R + F + + + +L+ LA + G+ H+A D T L
Sbjct: 146 GPAIDTARLAWHFQRHQRLIEGLGSEQEPALQLRALAESLGLPVYPEHNAFNDALTTAQL 205
>gi|146309112|ref|YP_001189577.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
gi|145577313|gb|ABP86845.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
Length = 233
Score = 45.2 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 37/197 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---VFIT 61
FV+ D ET G ++ D+ V +D I+ + F LPD +A I
Sbjct: 41 FVVLDLETTGLNMRRDQVLAIGAVVIDNG--AIDLAQQFERTLH---LPDHQASASTLIH 95
Query: 62 GITPQKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
GI P + GV E F F + + F + + + R
Sbjct: 96 GIAPSEV-ARGVEPVEALLGFM-----EFVGSSPV------LAFHAEFDQRMLARALKQH 143
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ + DV P G L + G++ H+A
Sbjct: 144 LGYRLQHS-----FFDVAEIAPLLCPQS----RIRQGG----LDEWVAEFGLQVHQRHNA 190
Query: 178 KADVYATLALVWLIREK 194
AD T L ++ K
Sbjct: 191 SADALVTAELALMLFSK 207
>gi|310642523|ref|YP_003947281.1| dnaq family exonuclease/ding family helicase [Paenibacillus
polymyxa SC2]
gi|309247473|gb|ADO57040.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus
polymyxa SC2]
Length = 960
Score = 45.2 bits (106), Expect = 0.027, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 27/183 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F + D+ET G A D Q +D I + P +P P +TGIT
Sbjct: 3 FAVLDFETTGTQSADD-IIQVGLAIIDHD-NSISRVYGSYVNPGRS-IP-PFITGLTGIT 58
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+E E + ++G+N + FD + ++ R Y + +
Sbjct: 59 DDDVKDAPALE-EMMMELVPMLDD--VVLVGHN-VAFDFNFLQSALDRCGYLPFSGRILD 114
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
D L +M P +S++L ++ G+ H H A +D AT
Sbjct: 115 ---TMDFLKIMF------PSL----------SSYQLGFVSSEFGLAHDRPHQADSDALAT 155
Query: 185 LAL 187
+
Sbjct: 156 AEV 158
>gi|296102681|ref|YP_003612827.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295057140|gb|ADF61878.1| ribonuclease T [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 216
Score = 45.2 bits (106), Expect = 0.027, Method: Composition-based stats.
Identities = 41/217 (18%), Positives = 64/217 (29%), Gaps = 38/217 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEEGWLTP-DTTLHFHVEPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N I+ +N FD ++ R RN
Sbjct: 82 PHNPLRGAVSEYDALHAIFKMVRKGMKESNCSRAIMVAHNATFDHSFTMAAAERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACITAGIEFDGT-----------------Q 179
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQ 210
AH A D T L I + +L + + +
Sbjct: 180 AHSALYDTERTAELFCEIVNRWKRLGGWPLAMGDSEE 216
>gi|228914217|ref|ZP_04077833.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228845421|gb|EEM90456.1| DnaQ family exonuclease/DinG family helicase [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 927
Score = 45.2 bits (106), Expect = 0.027, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 31/182 (17%)
Query: 9 DYETFGRD--VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT-P 65
D ET G D+ Q A V V+ +I F P + P FIT +T
Sbjct: 2 DLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKREIPP-----FITELTGI 54
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+++ E + + +N + FD + + Y
Sbjct: 55 DESMVKQAPLFEDVAPMVVELLQ-GAAFVAHN-VHFDWNFLTEELRQAGYTEI------H 106
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
+ D +++ + I P+ D S+KL+DLA + +EH H A +D AT
Sbjct: 107 CPKVDTVELAQ---------ILLPTAD----SYKLRDLAKQHELEHDQPHRADSDALATA 153
Query: 186 AL 187
L
Sbjct: 154 EL 155
>gi|224417820|ref|ZP_03655826.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
98-5491]
gi|253827160|ref|ZP_04870045.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
98-5491]
gi|313141361|ref|ZP_07803554.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
98-5491]
gi|253510566|gb|EES89225.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
98-5491]
gi|313130392|gb|EFR48009.1| DNA polymerase III subunit epsilon [Helicobacter canadensis MIT
98-5491]
Length = 247
Score = 45.2 bits (106), Expect = 0.027, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 45/184 (24%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
F I D ET G + + +P + + + ES F FC+ +Y+ +TGI
Sbjct: 71 FCIVDIETNGHNPFVHQPIEIGAIVYQGG-KICESFHSFVFCEEIPEYI-----TKLTGI 124
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV-----PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T E + +IHQ + + +N + FD + N Y +
Sbjct: 125 T--------SPMLEKAPKIHQVLESFKLFLSDCVFVAHN-VNFDYQFLSNALYHYGFG-- 173
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
Y ++P I+ + + + L+ L GI H H
Sbjct: 174 --------------------YLYNPRLCTIKLAQKTFTSPRYSLEFLNEFLGIRHSPLHR 213
Query: 177 AKAD 180
A D
Sbjct: 214 ALED 217
>gi|150005410|ref|YP_001300154.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
gi|212694908|ref|ZP_03303036.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
gi|237727134|ref|ZP_04557615.1| DNA Pol III epsilon chain [Bacteroides sp. D4]
gi|265750418|ref|ZP_06086481.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
gi|294777188|ref|ZP_06742645.1| exonuclease [Bacteroides vulgatus PC510]
gi|319640629|ref|ZP_07995346.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
gi|149933834|gb|ABR40532.1| DNA Pol III epsilon chain [Bacteroides vulgatus ATCC 8482]
gi|212662468|gb|EEB23042.1| hypothetical protein BACDOR_04445 [Bacteroides dorei DSM 17855]
gi|229433990|gb|EEO44067.1| DNA Pol III epsilon chain [Bacteroides dorei 5_1_36/D4]
gi|263237314|gb|EEZ22764.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_33FAA]
gi|294449057|gb|EFG17600.1| exonuclease [Bacteroides vulgatus PC510]
gi|317387750|gb|EFV68612.1| DNA Pol III epsilon chain [Bacteroides sp. 3_1_40A]
Length = 258
Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 49/208 (23%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVF 59
+ N V +D ET G ++ DR + ++V + E + + +P+ ++
Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPE-QSSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 60 IHGIY-DADVADCPTFKEVAKEIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDV----MRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GI 169
D++ ++ IY KL+ L+ A G
Sbjct: 114 ---------IDMMKRKFIDVQVIYH------------------KLEQRTLSAAYKFYCGK 146
Query: 170 EHVNAHDAKADVYATLALVWLIREKKPK 197
+AH A+AD AT ++ ++ P+
Sbjct: 147 NLEDAHTAEADTRATYEVLKSQLDRYPE 174
>gi|300855094|ref|YP_003780078.1| putative exonuclease [Clostridium ljungdahlii DSM 13528]
gi|300435209|gb|ADK14976.1| predicted exonuclease [Clostridium ljungdahlii DSM 13528]
Length = 202
Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 47/203 (23%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + +D ET G Q + + VD + I +FF A DY+ +P A +
Sbjct: 2 NMIFFDTETTGLRPGN--ICQLSYILVDTSAKPTKTIGK-NIFF---AVDYI-EPSAEKV 54
Query: 61 TGITPQKA--LRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYR-NFY 115
G T + L G+ F + +F + +IG+N + FD + + F N
Sbjct: 55 HGFTVETLYKLSSGMN---FKDHLDEFLNDFQNADILIGHN-VNFDIKFLSSEFKNCNEI 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH---- 171
+ + ++ N ++ ++ + + P +L+++ IE+
Sbjct: 111 LNIKHTFCTMNYYKNICNLKN-----RYNKCKAP---------RLEEVVRFLHIENPYIN 156
Query: 172 ----------VNAHDAKADVYAT 184
N HDA+ D AT
Sbjct: 157 AVSKKYFNGTGNFHDARFDTTAT 179
>gi|145633650|ref|ZP_01789377.1| oligoribonuclease [Haemophilus influenzae 3655]
gi|145635428|ref|ZP_01791129.1| oligoribonuclease [Haemophilus influenzae PittAA]
gi|229845250|ref|ZP_04465383.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
gi|144985527|gb|EDJ92343.1| oligoribonuclease [Haemophilus influenzae 3655]
gi|145267302|gb|EDK07305.1| oligoribonuclease [Haemophilus influenzae PittAA]
gi|229811845|gb|EEP47541.1| oligoribonuclease [Haemophilus influenzae 6P18H1]
Length = 182
Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|329298346|ref|ZP_08255682.1| ribonuclease T [Plautia stali symbiont]
Length = 222
Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 9 DYETFGRDVALDRPAQFAG--VRVDRQ--WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A +++D + + T F +P + + +PEA+ TGI
Sbjct: 23 DVETAGFNAQTDALLEIAATTLKMDEDGWLHR-DETLHFHVEPFEGAILNPEALAFTGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN-------NIRFDDYYS-----RNIFYR 112
P LR V E E I + T G N N FD + R R
Sbjct: 82 PSNPLRGAVSEYEALHAIFK-MVRKGTKDSGCNRAIIVAHNATFDHNFLMATAERTGMKR 140
Query: 113 NFYDSYRW 120
N + +
Sbjct: 141 NPFHPFAT 148
>gi|188997445|ref|YP_001931696.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188932512|gb|ACD67142.1| Exonuclease RNase T and DNA polymerase III [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 203
Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 36/200 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAG-------VRVDRQWEKIESTEVFFCKPADDYLPDP 55
N +V +D ET G + +D A + ++ ++ I + + +D +
Sbjct: 32 NEYVAFDTETTGLNPKVDDILSIAAVKIKDNKILLNERFNVIVKPDR---EINEDVI--- 85
Query: 56 EAVFITGITPQKALRDGVVEAEFSRR-IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
I G+ +K L G+ E R +H S P ++GY + FD F +
Sbjct: 86 ---KIHGLR-KKDLESGIPIEEAVDRFVHFIGSRP---LVGY-YLEFDVAMINKYFKKLS 137
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ ++V Y + I G + + I
Sbjct: 138 GTTLPNKQ---------IEVSALYYDYKIGLIP-----QGFVDLRFDSILKDLDIPTFGK 183
Query: 175 HDAKADVYATLALVWLIREK 194
HDA D T + ++ K
Sbjct: 184 HDALNDAIMTALIFLKLKNK 203
>gi|146305663|ref|YP_001186128.1| oligoribonuclease [Pseudomonas mendocina ymp]
gi|166216580|sp|A4XPY0|ORN_PSEMY RecName: Full=Oligoribonuclease
gi|145573864|gb|ABP83396.1| Exonuclease, RNase T and DNA polymerase III [Pseudomonas
mendocina ymp]
Length = 180
Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ + D E G + D + A + D + + V +D+ L
Sbjct: 4 PNNLIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSDETL 54
>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
Length = 1401
Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 35/225 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY---LPDPEAVFIT 61
FV++D ET G + + + V++ EKI E F D +P + IT
Sbjct: 388 FVVFDLETTGLNPSQHDIIEIGAVKIKAG-EKIAEFETFI-----DIDKNVPA-KITEIT 440
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI ++ G + + + I +F ++ +N FD + R +
Sbjct: 441 GIN--TSMLTGAPKLKAA--IERFIDFIGDGVLVAHNADFDYGFLRTALQKLEI------ 490
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ +LD + A D ++KL LA +E + H A AD
Sbjct: 491 ---NRKEYTVLDTLALSRALIKDS----------KNYKLNTLAEYFSVELDDHHRALADA 537
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
AT ++ + K + + ++ N ID +++ P V
Sbjct: 538 DATAEILKKLLAIIEK--DDNSNLKDINDYISKIDWKDLRPFHAV 580
>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 1398
Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 34/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
++++D ET G D + ++V+ E +E F + + P PE + +TGI
Sbjct: 382 YIVFDLETTGFSNRNDAITEIGAIKVENG-EIVEE----FSQLINPERPIPEKIQKLTGI 436
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + + + F ++ ++ +N+ FD + R N
Sbjct: 437 TNEMVIDKPT-----ISEVLPKFLDFCKDSILVAHNS-DFDTGFVREKASENNLP----- 485
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+D +D + PD + KL +A + N H A D
Sbjct: 486 -----YDFDAIDTVILSRLLMPDL----------KNHKLNTIAKELNVSLENHHRAVDDA 530
Query: 182 YATLAL 187
AT +
Sbjct: 531 TATAQI 536
>gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
Length = 240
Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 53/184 (28%), Gaps = 35/184 (19%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I+D ET G D A R + V + ++ + D DPEA+ + G+T
Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCVEL---VNRMATGNNLHIYLNPDRDSDPEALAVHGLT 60
Query: 65 PQKALRDG-VVEA--EFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ E EF + I +N FD + +
Sbjct: 61 TEFLSDKPRFAEVADEFVKFIQGAELIA--------HNAAFDVKFFNAELAKTGRGPI-T 111
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAK 178
+ + D + + P S L L GI H H A
Sbjct: 112 EY-----CATVTDSLLHARSLFPG---------KRNS--LDALCDRFGISNAHRTLHGAL 155
Query: 179 ADVY 182
D
Sbjct: 156 LDSQ 159
>gi|301170471|emb|CBW30078.1| oligoribonuclease [Haemophilus influenzae 10810]
Length = 182
Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|227328518|ref|ZP_03832542.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 223
Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + + T F +P + + +P A+ GI
Sbjct: 23 DVETAGFNAKTDALLEVAAVTLKMDQDGWLKP-DETLHFHVEPFEGAILEPAALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 82 PTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 1437
Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 41/199 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEAVFI 60
+V++D ET G D+ + A V+V E I+ E F P + D + + +
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HDGEIIDKFE-RFSNPHERLSDTIKN-----L 473
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T I+ + E + F + + +N FD + + R +Y
Sbjct: 474 THISDDMLVD--APE---IDDVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERAGLGNY 527
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N D L++ R I G L LA G+E H A
Sbjct: 528 T------NGVIDTLELSRT--------INTEFGKHG-----LNFLAKKYGVELTQHHRAI 568
Query: 179 ADVYAT----LALVWLIRE 193
D AT + ++ + E
Sbjct: 569 YDTEATAYIFIKMLKQVEE 587
>gi|104783881|ref|YP_610379.1| oligoribonuclease [Pseudomonas entomophila L48]
gi|122401621|sp|Q1I440|ORN_PSEE4 RecName: Full=Oligoribonuclease
gi|95112868|emb|CAK17596.1| oligoribonuclease (3'->5' exoribonuclease) [Pseudomonas entomophila
L48]
Length = 180
Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 44/204 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
+ + D E G D D + A + D + + V +D+ L D
Sbjct: 4 PQNLIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTR 63
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFY 111
G + Q+ V AE + F C N+I D R Y
Sbjct: 64 THGNSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICG---NSICQD----RRFLY 116
Query: 112 RNF--YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
R+ ++Y + N D+ + ++PD SFK
Sbjct: 117 RHMRGLENYFH-YRN----LDVSTLKELAARWAPDV---------RDSFK---------- 152
Query: 170 EHVNAHDAKADVYATLALVWLIRE 193
+ H A D+ ++A + RE
Sbjct: 153 -KGSTHLALDDIRESIAELRHYRE 175
>gi|225850393|ref|YP_002730627.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
gi|225646485|gb|ACO04671.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
Length = 206
Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 22/183 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F +D ET G DV D V++ KI+ + F+ + +P+ E + I I
Sbjct: 34 TFCSFDLETTGLDVEKDEIISIGAVKIKE--MKIDLSTSFYRIVKPERIPEKENILIHSI 91
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + ++ G E R + F T +IGY + FD + +
Sbjct: 92 TASE-MKKG----EDIRDVLPKFLEYIKGTVLIGY-FVSFDISMLSKYTQKFYGFPIL-- 143
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N D+ + Y P S L +A I H+A D
Sbjct: 144 ----NPYIDVSQL----YIKKKVKSYTPYEKIKEKS--LDQIAEELNIPVRKRHNALYDS 193
Query: 182 YAT 184
T
Sbjct: 194 ITT 196
>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
10507]
gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
10507]
Length = 1464
Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 34/184 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITG 62
FV++D ET G + + VRV + +E F + +P P + +T
Sbjct: 439 SFVVFDLETTGFSPMSCQIIEIGAVRV-EDGKIVERFSTFV----NPKVPIPFRIEQLTS 493
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I + V+E E + +F S ++ +N FD + R
Sbjct: 494 INDSMVMDAPVIE-EVLPKFLEFCS--GAVMVAHNA-DFDMSFVEFNCDRLGIP------ 543
Query: 123 DNGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
D +D + P FKL +A A I + H A D
Sbjct: 544 ------HDFTYIDTVGMARFLLPSL----------NRFKLDTVAKALEIPLGHHHRAVDD 587
Query: 181 VYAT 184
T
Sbjct: 588 AACT 591
>gi|49079546|gb|AAT49904.1| PA3232 [synthetic construct]
Length = 209
Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 29/195 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET D V V R + + +P D E++ I +
Sbjct: 36 DLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRADL 93
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY----SRNIFYRNFYDSYRWSWDN 124
+E + R++ F ++GY + FD R + R ++
Sbjct: 94 EGQLQLE-QALRQVLAFIGDRP--LLGY-YLSFDVAVLNRHLRQLLDRQLHNPS------ 143
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+++ + +P D + LA A + H A D A
Sbjct: 144 -------IEISSLYH--RKVSRHFP---DAHIDLRFDTLARALDVPVSGRHTALGDAQAV 191
Query: 185 LAL-VWLIREKKPKL 198
+ + L++ PK+
Sbjct: 192 ALMFMRLLKGPAPKV 206
>gi|296135837|ref|YP_003643079.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
Length = 239
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
MT V+ D ET G + A DR + AGV + + + + + + D P+A+
Sbjct: 1 MTRQIVL-DTETTGLNPASGDRIIEVAGVEL---FNRRLTGKHYHAYLNPDRASHPDALK 56
Query: 60 ITGITPQKALRDGVVE 75
+ G+T + E
Sbjct: 57 VHGLTEEFLSDKPRFE 72
>gi|145637656|ref|ZP_01793311.1| oligoribonuclease [Haemophilus influenzae PittHH]
gi|145269179|gb|EDK09127.1| oligoribonuclease [Haemophilus influenzae PittHH]
Length = 182
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct]
Length = 265
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + + A+ I G+T
Sbjct: 31 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYEV--EAGALAIHGLT 87
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 88 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 143
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 144 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 189
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 190 LLADVYLAM 198
>gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
Length = 862
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSEEVHGFSD 550
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--FYDSYRWSWD 123
G E + + FS N I+G+N + +D N R+ ++
Sbjct: 551 AYLQEHGE-EPAIVLQAFKEFSK-NAIIVGHN-VNYDVTIFTNELARHNLGNPEFKAI-- 605
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D LD+ R Y P+ + KL LA I H H+A D+ A
Sbjct: 606 -----YDTLDIYRRFY---PNL----------PNHKLGFLASKFPIHHEPTHNAMDDILA 647
Query: 184 TLAL 187
T L
Sbjct: 648 TAQL 651
>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
Length = 1437
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G LD +F + I FF + + V +
Sbjct: 405 EEYVVFDLETTGLSPRLDDIIEFGA--TIVKNNTITQKIQFFLQTKREL--SAFTVESSH 460
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I + L++G + E ++I++ +N FD + + F + D
Sbjct: 461 IN-NEMLKNGYAQEEGIKKIYEILKDKIAVA---HNANFDINFCKEKFSKLGLD------ 510
Query: 123 DNGNSRWDLLDVMRAIYAFSPD 144
NS+ LD + Y +PD
Sbjct: 511 ---NSKIFGLDTLALSYFLNPD 529
>gi|77163872|ref|YP_342397.1| oligoribonuclease [Nitrosococcus oceani ATCC 19707]
gi|76882186|gb|ABA56867.1| Exonuclease [Nitrosococcus oceani ATCC 19707]
Length = 183
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+++ + D E G + D + A V D Q IE
Sbjct: 5 SSNLIWLDLEMSGLNTIQDVILEIATVVTDSQLNIIEE 42
>gi|110635810|ref|YP_676018.1| DNA polymerase III subunit epsilon [Mesorhizobium sp. BNC1]
gi|110286794|gb|ABG64853.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
Length = 242
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 61/189 (32%), Gaps = 31/189 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + V + ++ T +F P + P+A + GI+
Sbjct: 4 IIFDTETTGLDPREDRVIELGCVELANRF-PTGRTLHYFINPQGRSV-HPDAQAVHGISD 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
V F+ + +F + + +N FD + F R + +
Sbjct: 62 ADLAGKPV----FAEILDEFLEFIDGAKLVAHNANFDIGFINAEFQRVGQP-----YIDP 112
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVYA 183
D L + R + P+ L L GI H H A D
Sbjct: 113 ARVIDTLAIARRKHPMGPNS--------------LDALCRRYGIDNSHRTKHGALLDAEL 158
Query: 184 T----LALV 188
+ L
Sbjct: 159 LAEVYIELA 167
>gi|325266418|ref|ZP_08133095.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
gi|324981861|gb|EGC17496.1| oligoribonuclease [Kingella denitrificans ATCC 33394]
Length = 182
Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
N+ D E G + D+ + A + D+ + + V+ +D+ L +A
Sbjct: 5 NNLCWLDMEMTGLNPDSDKIIEIAMIITDKDLNVLAQSPVYAIHQSDEILNGMDAWCTAT 64
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVP 89
TG+T ++ EAE + +
Sbjct: 65 HARTGLT-ERVRASTHTEAEVEEALLAWMQEW 95
>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 1402
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E I+ + F + + +T IT
Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 438
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++ EA ++ F+ C +N++FD + R Y
Sbjct: 439 -DEMVQAADDEAVVIKQFMDFYGNDPLCG---HNVQFDVGFVNAALKRCGYPEI------ 488
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L L + + H A D AT
Sbjct: 489 ---SQPVVDTLEVSRLLHP--------EQSRHT--LDSLCRKYNVALEHHHRANQDAEAT 535
>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 1445
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E I+ + F + + +T IT
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++ EA ++ F+ C +N++FD + R Y
Sbjct: 482 -DEMVQAADDEAVVIKQFMDFYGNDPLCG---HNVQFDVGFVNAALKRCGYPEI------ 531
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L L + + H A D AT
Sbjct: 532 ---SQPVVDTLEVSRLLHP--------EQSRHT--LDSLCRKYNVALEHHHRANQDAEAT 578
>gi|332139961|ref|YP_004425699.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype']
gi|327549983|gb|AEA96701.1| oligoribonuclease [Alteromonas macleodii str. 'Deep ecotype']
Length = 181
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 55/202 (27%), Gaps = 40/202 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
++ V D E G D + A + D Q + V +DD L D +
Sbjct: 6 SNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQSDDVLNNMDEWCTRV 65
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
G + + + E S + F C N I D F
Sbjct: 66 HGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCG---NTIGQD-----RRFMV 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + N D+ + + P+ + G E
Sbjct: 118 KYMPELEAYFHYRN--IDVSTIKELTRRWKPEVLD--------------------GFEKK 155
Query: 173 NAHDAKADVYATLALVWLIREK 194
H A D+ ++ + REK
Sbjct: 156 GVHLALDDIRESIEEMRYYREK 177
>gi|294083688|ref|YP_003550445.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663260|gb|ADE38361.1| DNA polymerase III, epsilon subunit [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 730
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 60/194 (30%), Gaps = 30/194 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVD----RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G DR Q + VD + + E+ + + GI
Sbjct: 37 DLETTGLKPQTDRIVQIGAIGVDVAVAADRAEDDHIEML---VDPGIAVPAASTAVHGIN 93
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
L D A + F + I+GYN I FD + N R W W
Sbjct: 94 -DAMLADAKPIAVALPALRSFINK--RIILGYN-IGFDLAFLTNEAKRQG---LEWKWSG 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
L V+ P+ + + L LA G+ + H A D AT
Sbjct: 147 ALCLRQLATVL-----LGPEAMLMIAD--------LDALAAHYGVPVIGRHTALGD--AT 191
Query: 185 LALVWLIREKKPKL 198
+ + + P L
Sbjct: 192 IT-AQVYHKMVPHL 204
>gi|261417450|ref|YP_003251133.1| Exonuclease RNase T and DNA polymerase III [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261373906|gb|ACX76651.1| Exonuclease RNase T and DNA polymerase III [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 179
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + V D E G D + A + D +
Sbjct: 5 SRNLVWMDLEMSGLYPEKDVILEIATIVTDANLNILAE 42
>gi|317047907|ref|YP_004115555.1| ribonuclease T [Pantoea sp. At-9b]
gi|316949524|gb|ADU68999.1| ribonuclease T [Pantoea sp. At-9b]
Length = 222
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + D W + T F +P + + +PEA+ TGI P
Sbjct: 23 DVETAGFNAKTDALLEIAATTLKMDDDGWLHCDETLHFHVEPFEGAILNPEALAFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + S N II +N FD + R RN
Sbjct: 83 SNPLRGAVSEYDALHAIFKMVRKGMKDSHCNRAIIVAHNATFDHNFLMAAAERVGLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
Length = 1437
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 27/187 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G A D+ + + V++ + I F + V +T IT
Sbjct: 421 YVVFDVETTGLSAAYDKVIELSAVKMVKG-NVIAEFSEF---IDPGFSLSQTTVDLTSIT 476
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+R E E +F+ ++G+N + FD + + R+ S N
Sbjct: 477 -DDMVRGSKSEKEVFTAFREFYGD--AILVGHN-VTFDMGFMNEGYERHGMGSI----TN 528
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ S++L LA G+ H A D T
Sbjct: 529 P-----VIDTLTLARFLYPN----------MRSYRLNTLAKHFGVLLEQHHRAIFDSETT 573
Query: 185 LALVWLI 191
L +
Sbjct: 574 GHLNRIF 580
>gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
Length = 238
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 59/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + + A+ I G+T
Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYEV--EAGALAIHGLT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 70 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 126 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRAFHGALLDSE 171
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 172 LLADVYLAM 180
>gi|289808554|ref|ZP_06539183.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
Length = 37
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYE 462
++LT +++Y N+LQ LS +Y D+ K GL+ +L++
Sbjct: 1 QVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSLWQ 37
>gi|329123183|ref|ZP_08251752.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
gi|327471528|gb|EGF16972.1| oligoribonuclease [Haemophilus aegyptius ATCC 11116]
Length = 182
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLEPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55
>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
Length = 1449
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 37/186 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA---DDYLPDPEAVFI 60
++ +D ET G D +F VR+ + I+ ++F KP ++
Sbjct: 393 TYISFDLETTGLSCYFDHIIEFGAVRI-KNSTIIDRKQLFI-KPPVSIPGFITS-----K 445
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T IT ++ AE I + ++ +N FD Y+ R
Sbjct: 446 TNITNDMV-KNAKPFAEAIDEILDYIKDD---VLVAHNATFDYYFLNEELRRIGRKPLT- 500
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL---ANGIEHVNAHDA 177
N D LD+ RA+ PD +++L +L+ N AH A
Sbjct: 501 -----NVVIDTLDMSRAV---LPD----------RRAYRLGNLSRYYHVN-YNEEEAHRA 541
Query: 178 KADVYA 183
D A
Sbjct: 542 DFDAGA 547
>gi|254787466|ref|YP_003074895.1| oligoribonuclease [Teredinibacter turnerae T7901]
gi|237686441|gb|ACR13705.1| oligoribonuclease [Teredinibacter turnerae T7901]
Length = 182
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP 47
N+ + D E G D + A V D + + +P
Sbjct: 6 NNLIWVDLEMTGLVPERDFIIEIATVVTDEHLNILAEGPVMAIHQP 51
>gi|160872136|ref|ZP_02062268.1| oligoribonuclease Orn [Rickettsiella grylli]
gi|159120935|gb|EDP46273.1| oligoribonuclease Orn [Rickettsiella grylli]
Length = 181
Score = 44.8 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 1 MTN---HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
MT + + D E G D D+ + A + D Q E IE VF ++ L
Sbjct: 1 MTPKAGNLIWIDLEMTGLDTNQDKIIEIATIITDSQLEIIEEGPVFAIFQSESILTH 57
>gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans
A8]
gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans
A8]
Length = 240
Score = 44.8 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I+D ET G D A R + V ++ + D DPEA+ + G+T
Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCV---EMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLT 60
Query: 65 PQKALRD 71
+
Sbjct: 61 TEFLSDK 67
>gi|110634574|ref|YP_674782.1| DNA polymerase III, epsilon subunit [Mesorhizobium sp. BNC1]
gi|110285558|gb|ABG63617.1| DNA polymerase III, epsilon subunit [Chelativorans sp. BNC1]
Length = 498
Score = 44.8 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 8 YDYETFGRDVALDRPAQFAG-------VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+D ET G D R Q AG VR D +E + + +P P+++ I
Sbjct: 18 FDTETTGLDTRTARVVQVAGVAISRGAVRQDESFESLVHPGMS--------IP-PDSIRI 68
Query: 61 TGITPQKALRDGVVEAEFSRRIHQF 85
GIT F+ F
Sbjct: 69 HGITDGMLREA----PAFAAVWRSF 89
>gi|167031397|ref|YP_001666628.1| DNA polymerase IIIsubunit epsilon [Pseudomonas putida GB-1]
gi|166857885|gb|ABY96292.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
Length = 236
Score = 44.8 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 33/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D ET G + D+ V IE + F + + L P +V I G+
Sbjct: 45 DLETSGLNPNRDQVLSIGAV-------AIEDGAIDFAQQFERTLHRPLQKTNASVLIHGL 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P AL G AE + F + F + + + R +S
Sbjct: 98 GPS-ALAAGCDPAEALLDLLDFMGDSP-------VLAFHAPFDQRMLARALKESLGHRLQ 149
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ LDV +PD + R+ G L D G++ H A AD
Sbjct: 150 SV-----FLDVAELAPMLNPDTV---LREAG-----LDDWVARFGLQVEERHHASADAQV 196
Query: 184 TLALVWLIREK 194
T L ++ +
Sbjct: 197 TAELALILFSQ 207
>gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
piechaudii ATCC 43553]
gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
piechaudii ATCC 43553]
Length = 239
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I+D ET G D A R + V ++ + D DPEA+ + G+T
Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCV---EMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ F+ + +F F I +N FD + +
Sbjct: 61 TEFLSDK----PRFADVVDEFVKFIQGAELIA--HNAAFDVKFFNAELAKTGRGPIT 111
>gi|262280955|ref|ZP_06058738.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
gi|262257855|gb|EEY76590.1| oligoribonuclease [Acinetobacter calcoaceticus RUH2202]
Length = 188
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V D L
Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDNLNVLAEGPVLAVHQPDRIL 56
>gi|308273149|emb|CBX29752.1| hypothetical protein N47_F14470 [uncultured Desulfobacterium sp.]
Length = 182
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 53/200 (26%)
Query: 1 MTNH---FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDP 55
M+++ +VI+D ET G + R + V ++ I + C A
Sbjct: 10 MSSNSDKYVIFDVETTGFNPQHGARIIEIGVVHIENG-NIISEFKSLINCGKAV----SK 64
Query: 56 EAVFITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+A + GIT + + E +F + F +T + +N FD + R R
Sbjct: 65 QAQKVNGITNEMLSGEPTPEEVFPDFLK-----FISKSTLVA--HNAVFDISFLRYELSR 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD---LALANGI 169
+ D L + PD L++ L +A I
Sbjct: 118 LGF----------VLSNDYLCTLNISRKIFPD---------------LENHKLLTVAKHI 152
Query: 170 -----EHVNAHDAKADVYAT 184
++++ H A D T
Sbjct: 153 LVNLPKNLHLHRALDDARLT 172
>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
Length = 231
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD F Y+ N+
Sbjct: 55 MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-KAENAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|308049484|ref|YP_003913050.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
DSM 9799]
gi|307631674|gb|ADN75976.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
DSM 9799]
Length = 249
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 59/195 (30%), Gaps = 32/195 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
FV D+ET G + D V + + + CK + ++ +P E+V
Sbjct: 59 FVALDFETTGMNPDQDAIISIGLV----PFTQ----QRIQCKGSAHWIVNPNRPLNEESV 110
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI--RFDDYYSRNIFYRNFYD 116
I GIT + +E + + ++ Y I F D R
Sbjct: 111 VIHGITHSDLEQAPDLEVVLDQVLDALAGK--IVVVHYKQIEREFLDRALRARLGEGIRF 168
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT--SFKLQDLALANGIEHVNA 174
D LD+ W +R G S +L G+
Sbjct: 169 PV----------VDTLDI--EAAIQHRACQGWFNRLRGKKPDSVRLGRARERYGLPAYQP 216
Query: 175 HDAKADVYATLALVW 189
H A D AT L+
Sbjct: 217 HHALTDALATAELLQ 231
>gi|302326392|gb|ADL25593.1| oligoribonuclease [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 185
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + V D E G D + A + D +
Sbjct: 11 SRNLVWMDLEMSGLYPEKDVILEIATIVTDANLNILAE 48
>gi|210622633|ref|ZP_03293293.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
gi|210154134|gb|EEA85140.1| hypothetical protein CLOHIR_01241 [Clostridium hiranonis DSM 13275]
Length = 273
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 46/210 (21%), Positives = 69/210 (32%), Gaps = 44/210 (20%)
Query: 5 FVIYDYE-----------TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP 53
++++D E TF + Q V++D + I + + F KP
Sbjct: 7 YIVFDLEFNQGFNKKTNKTFSDNACPFEIIQLGAVKLDSNFNIIAAFDTFI-KPCLYTSM 65
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRN 108
P ITGI + D F +F P C+ G +++R RN
Sbjct: 66 HPYVAKITGI----CMEDLENAPTFKEAFKKFTEFVASDDPIFCVWGKSDLR---ELYRN 118
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
I Y N D S D+ YA A S L++ +A
Sbjct: 119 IKYHNLPDLSL-----PKSYIDVQ-----YYASD------FINHTTAQSIGLENAVIALN 162
Query: 169 IEHVNA-HDAKADVYATLALVWLIREKKPK 197
+E A H+A D Y T + PK
Sbjct: 163 LEDTVAYHNALNDAYYT---AKVFASINPK 189
>gi|167010822|ref|ZP_02275753.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica FSC200]
Length = 230
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 58/189 (30%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + A+ I G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYKV--EAGALAIHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 62 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 117
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 118 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 163
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 164 LLADVYLAM 172
>gi|148927126|ref|ZP_01810755.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
gi|147887420|gb|EDK72865.1| oligoribonuclease [candidate division TM7 genomosp. GTL1]
Length = 184
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ D E G D DR + A + D +E+
Sbjct: 13 LLWLDLEMTGLDPQRDRVLEVAAIATDWNFEE 44
>gi|15598428|ref|NP_251922.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
gi|107102762|ref|ZP_01366680.1| hypothetical protein PaerPA_01003829 [Pseudomonas aeruginosa PACS2]
gi|218890575|ref|YP_002439439.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
gi|254236194|ref|ZP_04929517.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
gi|254241920|ref|ZP_04935242.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
gi|9949354|gb|AAG06620.1|AE004746_4 probable nuclease [Pseudomonas aeruginosa PAO1]
gi|126168125|gb|EAZ53636.1| hypothetical protein PACG_02159 [Pseudomonas aeruginosa C3719]
gi|126195298|gb|EAZ59361.1| hypothetical protein PA2G_02641 [Pseudomonas aeruginosa 2192]
gi|218770798|emb|CAW26563.1| probable nuclease [Pseudomonas aeruginosa LESB58]
Length = 208
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 29/195 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET D V V R + + +P D E++ I +
Sbjct: 36 DLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRADL 93
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY----SRNIFYRNFYDSYRWSWDN 124
+E + R++ F ++GY + FD R + R ++
Sbjct: 94 EGQLQLE-QALRQVLAFIGDRP--LLGY-YLSFDVAVLNRHLRQLLDRQLHNPS------ 143
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+++ + +P D + LA A + H A D A
Sbjct: 144 -------IEISSLYH--RKVSRHFP---DAHIDLRFDTLARALDVPVSGRHTALGDAQAV 191
Query: 185 LAL-VWLIREKKPKL 198
+ + L++ PK+
Sbjct: 192 ALMFMRLLKGPAPKV 206
>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LactinV 03V1-b]
gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LactinV 03V1-b]
Length = 1424
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQDFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
Length = 231
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD F Y+ N+
Sbjct: 55 MVKGSDPIDVVLKRFKEWSGDDILVA--HNASFD-----MGFINTAYEKVGLE-KAENAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLAWKLIKDAK 161
>gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
Length = 239
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
MT V+ D ET G + A DR + AGV + + + + + + D P+A+
Sbjct: 1 MTRQIVL-DTETTGLNPASGDRIIEVAGVEL---FNRRLTGKHYHAYLNPDRASHPDALK 56
Query: 60 ITGITPQKALRD 71
+ G+T +
Sbjct: 57 VHGLTEEFLSDK 68
>gi|227111797|ref|ZP_03825453.1| ribonuclease T [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 223
Score = 44.8 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + + T F +P + + +P A+ GI
Sbjct: 23 DVETAGFNAKTDALLEVAAVTLKMDQDGWLQP-DETLHFHVEPFEGAILEPAALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 82 PTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAAERCSLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
iheyensis HTE831]
gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus
iheyensis HTE831]
Length = 1428
Score = 44.8 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 27/192 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ FV++D ET G D + A V++ E ++ E F + + +TG
Sbjct: 412 DTFVVFDVETTGLSAVYDTIIELAAVKIKGG-EIVDRFESFA---NPHHALSQTTIDLTG 467
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT E + + F + I+ +N FD + F R +
Sbjct: 468 ITDDMVNDA----PEVADVLKDFHTWMGNDILVAHNASFDMGFLNQGFQR-----IDYEK 518
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ ++D + P+ + +L L IE H A D
Sbjct: 519 ASN----PVVDTLELARFLLPEL----------RNHRLNTLCKHLDIELTQHHRAIYDAE 564
Query: 183 ATLALVWLIREK 194
AT L+W + ++
Sbjct: 565 ATGYLLWKLVQR 576
>gi|255719107|ref|XP_002555834.1| KLTH0G18590p [Lachancea thermotolerans]
gi|238937218|emb|CAR25397.1| KLTH0G18590p [Lachancea thermotolerans]
Length = 323
Score = 44.8 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 19/177 (10%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFC------KPADDY 51
++ V D E G D D + + D I+ V C +
Sbjct: 72 ISRPIVWVDCEMTGLDHVNDHIIEICCIITDGDLNIIDEAGYESVIHCDKKIMDAMNEWC 131
Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+ + +T G VE E + ++ ++ N++ D + F
Sbjct: 132 IDHHGSSGLTQKVLDSTKTTGQVEEELLAYLRKYIPAERKGVLAGNSVHMDRVFMMREFP 191
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLAL 165
+ + D+ +M + +PD R GA + + L+ +A
Sbjct: 192 KVIDHLFYRI-------IDVSTIMEVSFRHNPDLASVFPRKKGAHTARADILESIAQ 241
>gi|157120016|ref|XP_001653489.1| oligoribonuclease, mitochondrial [Aedes aegypti]
gi|108875103|gb|EAT39328.1| oligoribonuclease, mitochondrial [Aedes aegypti]
Length = 210
Score = 44.8 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
++ V D E G +V DR + A V ++ E +E D + PE V
Sbjct: 34 HNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILER--------GPDIVIHEPEEVL 83
>gi|320353730|ref|YP_004195069.1| DNA polymerase III, subunit epsilon [Desulfobulbus propionicus DSM
2032]
gi|320122232|gb|ADW17778.1| DNA polymerase III, epsilon subunit [Desulfobulbus propionicus DSM
2032]
Length = 218
Score = 44.8 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 53/188 (28%), Gaps = 36/188 (19%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
T ++ D+ET G DRP + VR++ ++ + + +
Sbjct: 3 TPAVIVLDFETTGHSPNRGDRPIEVGAVRIEHD-RIVDRFQAL---MNPGFTISWFIERL 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY---RNFYDS 117
TGI+ E E R + +N FD + R+ +
Sbjct: 59 TGISNDLIAHAPPCE-EVMNRFADWMGDLPLVA---HNAGFDRAFLDAELALIGRHQSNP 114
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAHD 176
+ + A P+ + KL L GI H
Sbjct: 115 MACT-------------VLASRRLFPES----------PNHKLATLVNHLGIFTDGTFHR 151
Query: 177 AKADVYAT 184
A AD T
Sbjct: 152 ALADAEMT 159
>gi|325678237|ref|ZP_08157866.1| exonuclease [Ruminococcus albus 8]
gi|324110129|gb|EGC04316.1| exonuclease [Ruminococcus albus 8]
Length = 651
Score = 44.8 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 41/203 (20%)
Query: 1 MTNHF---VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
++ +F +I D ET G + D Q + + +F + EA
Sbjct: 198 ISENFDDMIILDTETTGLSPSYDELLQVSII------NGKGE-VLFDSYFKPNAASWDEA 250
Query: 58 VFITGITPQKA-LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ I+P+ + E + I Q + I+GYN + FD + + N
Sbjct: 251 QAVNHISPEMVKNSPRLNEKAY--EISQILDKAHK-IVGYN-VDFDLDF----LWLNG-- 300
Query: 117 SYRWSWDNGN-SRWDLLDVMRAIY---AFSPDGIQWPSRDDGATSFKLQDLALANGIE-- 170
N N + D++ + IY G +W KL A G +
Sbjct: 301 ---AGGSNDNFKKVDVMQMFAPIYGEINEKYGGYKWQ---------KLTKAADYYGYDWD 348
Query: 171 --HVNAHDAKADVYATLALVWLI 191
+AH++ D YATL + +
Sbjct: 349 SHAESAHNSLGDCYATLHVYKSV 371
>gi|253989411|ref|YP_003040767.1| ribonuclease T [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253780861|emb|CAQ84023.1| ribonuclease T [Photorhabdus asymbiotica]
Length = 217
Score = 44.8 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 42/193 (21%), Positives = 62/193 (32%), Gaps = 36/193 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + D W + + F +P + +P A+ TGI P
Sbjct: 23 DVETGGFNAKTDALLEIAAITLKMDDEGWITPDESLHFHIEPFEGANLEPAALEFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + S N II +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKMVRKGIKNSHCNRAIIVAHNANFDHGFVMAAAERARLKRNP 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + I SF ++ A
Sbjct: 143 FHPFATF-----DTAALGGLVLGQTILAKACIT------AGVSF-----------DNNQA 180
Query: 175 HDAKADVYATLAL 187
H A D T L
Sbjct: 181 HSALYDTNRTAEL 193
>gi|157120012|ref|XP_001653487.1| oligoribonuclease, mitochondrial [Aedes aegypti]
gi|157120014|ref|XP_001653488.1| oligoribonuclease, mitochondrial [Aedes aegypti]
gi|108875101|gb|EAT39326.1| oligoribonuclease, mitochondrial [Aedes aegypti]
gi|108875102|gb|EAT39327.1| oligoribonuclease, mitochondrial [Aedes aegypti]
Length = 192
Score = 44.8 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
++ V D E G +V DR + A V ++ E +E D + PE V
Sbjct: 16 HNLVWIDLEMTGLEVEKDRILEIACVITNKNLEILER--------GPDIVIHEPEEVL 65
>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
Length = 1432
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 45/223 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++ FV++D ET G D+ + V++ ++ ++ P D + +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSELI-NPEKDI--SYKIQEL 469
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT + +E +F + V + N FD +
Sbjct: 470 TGITNELIKDKPTIEEVLPKFMEFVGDSVLVAH-------NAEFDTGFISQKCREQG--- 519
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ +D + P+ +L +A GI +N H A
Sbjct: 520 LLYNNKK-------VDTLMLARVMLPNL----------KRHRLNVVAKELGIPLLNHHRA 562
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
D AT + F + + L D+ N+
Sbjct: 563 VDDAEATALI-----------FNKFLQMLTEKGAKTLSDVNNI 594
>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type
[Mycoplasma gallisepticum str. F]
Length = 1494
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
FVI+D ET G + ++ + A VRV + + F
Sbjct: 409 SFVIFDIETTGLNAYYEQIIEIAAVRVKAELNETNHQLEF 448
>gi|261254064|ref|ZP_05946637.1| oligoribonuclease [Vibrio orientalis CIP 102891]
gi|260937455|gb|EEX93444.1| oligoribonuclease [Vibrio orientalis CIP 102891]
Length = 181
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 31/129 (24%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA----- 57
+ + D E G D + + A + D + + V + P+A
Sbjct: 6 QNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVL-------AIHQPDAELKKM 58
Query: 58 ---VFITGI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYY 105
T + + + E E R+ +F C N++ D
Sbjct: 59 DEWCTTTHTGSGLVDRVRKSNIDEQEAVRQTIEFLEKWVPKGKSPICG---NSVGQD--- 112
Query: 106 SRNIFYRNF 114
R Y++
Sbjct: 113 -RRFLYKHM 120
>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
Length = 1432
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 45/223 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++ FV++D ET G D+ + V++ ++ ++ P D + +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSELI-NPEKDI--SYKIQEL 469
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT + +E +F + V + N FD +
Sbjct: 470 TGITNELIKDKPTIEEVLPKFMEFVGDSVLVAH-------NAEFDTGFISQKCREQG--- 519
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ +D + P+ +L +A GI +N H A
Sbjct: 520 LLYNNKK-------VDTLMLARVMLPNL----------KRHRLNVVAKELGIPLLNHHRA 562
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
D AT + F + + L D+ N+
Sbjct: 563 VDDAEATALI-----------FNKFLQMLTEKGAKTLSDVNNI 594
>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
Length = 1432
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 69/223 (30%), Gaps = 45/223 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
++ FV++D ET G D+ + V++ ++ ++ P D + +
Sbjct: 414 LSQTFVVFDIETTGFSNTNDKITEIGAVKI-ENFKIVDRFSELI-NPEKDI--SYKIQEL 469
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT + +E +F + V + N FD +
Sbjct: 470 TGITNELIKDKPTIEEVLPKFMEFVGDSVLVAH-------NAEFDTGFISQKCREQG--- 519
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ +D + P+ +L +A GI +N H A
Sbjct: 520 LLYNNKK-------VDTLMLARVMLPNL----------KRHRLNVVAKELGIPLLNHHRA 562
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
D AT + F + + L D+ N+
Sbjct: 563 VDDAEATALI-----------FNKFLQMLTEKGAKTLSDVNNI 594
>gi|90413340|ref|ZP_01221333.1| oligoribonuclease [Photobacterium profundum 3TCK]
gi|90325582|gb|EAS42051.1| oligoribonuclease [Photobacterium profundum 3TCK]
Length = 181
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 48/205 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--------FCKPADDYLPD 54
+ + D E G D + + + A + D Q + V K D
Sbjct: 6 QNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWC--- 62
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRN 108
++ + E + R+ F C N+I D R
Sbjct: 63 -TNTHTNSGLVERIRQSAFTEEDAIRQTIAFLEQWVPKGASPICG---NSIGQD----RR 114
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
Y++ + + D+ + + P+ ++ G
Sbjct: 115 FLYKHM--PELEQYFHY-RYLDVSTIKELTRRWQPELLE--------------------G 151
Query: 169 IEHVNAHDAKADVYATLALVWLIRE 193
+H A D++ ++A + RE
Sbjct: 152 FSKKGSHLALDDIHDSIAELRYYRE 176
>gi|268592614|ref|ZP_06126835.1| ribonuclease T [Providencia rettgeri DSM 1131]
gi|291311752|gb|EFE52205.1| ribonuclease T [Providencia rettgeri DSM 1131]
Length = 214
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 45/204 (22%), Positives = 64/204 (31%), Gaps = 36/204 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + W ++ T F +P + +P A+ TGI P
Sbjct: 23 DVETGGFNAKTDGLLEIAAITLKMDKDGWLSMDETLHFHVEPFEGANLEPSALAFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSV--PNT----CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + NT II +N FD + R RN
Sbjct: 83 TNPLRGAVSEYEALHAIFKVIRKGMKNTDCNRAIIVAHNANFDHSFVMNAAERAGLKRNP 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + DG A
Sbjct: 143 FHPFATF-----DTAALSGLVFGQTILAKACVSAGIPFDGK-----------------QA 180
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A D T L I K KL
Sbjct: 181 HGALYDTNRTALLFCEIVNKWKKL 204
>gi|114707953|ref|ZP_01440845.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Fulvimarina pelagi HTCC2506]
gi|114536582|gb|EAU39714.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Fulvimarina pelagi HTCC2506]
Length = 466
Score = 44.8 bits (105), Expect = 0.035, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPE------A 57
+ ++D ET G D Q +R VD + + E+ D L DP +
Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVDGKLVEGETF---------DTLVDPGGPIPRAS 324
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
I GIT + + + AE RR FS + + +N FD + R
Sbjct: 325 SKIHGITDKMVMGQPRI-AEAGRRFF-EFSKESVLVA--HNAPFDMSFLRR 371
>gi|302062272|ref|ZP_07253813.1| oligoribonuclease [Pseudomonas syringae pv. tomato K40]
Length = 107
Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
Length = 1635
Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 67/208 (32%), Gaps = 37/208 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + Q A ++ + I+ + F Y +TG
Sbjct: 591 STYVVFDVETTGLSAVHNDLIQIAATKMHKG-NPIDEFDEF---INPGYRLSEFTTELTG 646
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ E + Q F T ++ +N FD + + RN
Sbjct: 647 ITDDHV-KNAKPLYEVLTK-FQKFC-EGTILVAHNA-SFDVGFMNMNYSRNGLPII---- 698
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D + P+ F L L I + H A D
Sbjct: 699 -----SQPVVDTLEFARNLYPE----------MKRFGLGQLTKKFQIGLEHHHMANFDAE 743
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
AT L LF +L + R +N
Sbjct: 744 ATGRL----------LFVFLEELRTRNT 761
>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
subsp. cremoris SK11]
Length = 1635
Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 67/208 (32%), Gaps = 37/208 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + Q A ++ + I+ + F Y +TG
Sbjct: 591 STYVVFDVETTGLSAVHNDLIQIAATKMHKG-NPIDEFDEF---INPGYRLSEFTTELTG 646
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ E + Q F T ++ +N FD + + RN
Sbjct: 647 ITDDHV-KNAKPLYEVLTK-FQKFC-EGTILVAHNA-SFDVGFMNMNYSRNGLPII---- 698
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D + P+ F L L I + H A D
Sbjct: 699 -----SQPVVDTLEFARNLYPE----------MKRFGLGQLTKKFQIGLEHHHMANFDAE 743
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
AT L LF +L + R +N
Sbjct: 744 ATGRL----------LFVFLEELRTRNT 761
>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LactinV 01V1-a]
gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus iners LactinV 01V1-a]
Length = 946
Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|300115276|ref|YP_003761851.1| exonuclease RNase T and DNA polymerase III [Nitrosococcus
watsonii C-113]
gi|299541213|gb|ADJ29530.1| Exonuclease RNase T and DNA polymerase III [Nitrosococcus
watsonii C-113]
Length = 183
Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+++ + D E G + D + A V D Q IE
Sbjct: 5 SSNLIWLDLEMSGLNTTQDVILEIATVVTDSQLNVIEE 42
>gi|27383194|ref|NP_774723.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
110]
gi|27356368|dbj|BAC53348.1| bll8083 [Bradyrhizobium japonicum USDA 110]
Length = 304
Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 56/185 (30%), Gaps = 32/185 (17%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD--RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
V D ET G D D + A V D E F PE +TGI
Sbjct: 48 VFIDLETTGLDPVADEIVEIAMVPFDYSDDGRIFAVHESFARFRDPGRPIPPEVSAMTGI 107
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + AE I F ++ +N FD ++ + + SW
Sbjct: 108 TDAMVAGAAIEPAE----IEAFLGDTAALVVAHN-CSFDRRFAERFCPAFAHLPWACSWA 162
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAHDAKADVY 182
I W R++G KL LA A G H H A D
Sbjct: 163 E---------------------IPW--REEGFVDGTKLVHLAAACGFFHEG-HRAVHDCL 198
Query: 183 ATLAL 187
A + L
Sbjct: 199 AGIEL 203
>gi|293396307|ref|ZP_06640585.1| ribonuclease T [Serratia odorifera DSM 4582]
gi|291421096|gb|EFE94347.1| ribonuclease T [Serratia odorifera DSM 4582]
Length = 226
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + ++ + T F +P + PEA+ GI
Sbjct: 34 DIETAGFNARTDALLEIAAVTLKMDQDGWLQQ-DETLHFHVEPFEGANLQPEALAFNGID 92
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 93 PHNPLRGAVSEYDALHAIFKAVRKGIKDQGCNRAIIVAHNANFDHSFLMAAAERAGLKRN 152
Query: 114 FYDSYRW 120
+ +
Sbjct: 153 PFHPFAT 159
>gi|291454901|ref|ZP_06594291.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
gi|291357850|gb|EFE84752.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
Length = 247
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G D R A + V AD +P P A + GIT
Sbjct: 21 FDLETTGTDPREARIVTAAVIEVAD-----GERRGHRTWLADPGIPIPAGATAVHGITDA 75
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+A +G + + + + ++ YN FD R+ S
Sbjct: 76 RAAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNA-PFDLTLLAAELRRHRLPSLA 130
>gi|294634445|ref|ZP_06712981.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
gi|291092155|gb|EFE24716.1| oligoribonuclease [Edwardsiella tarda ATCC 23685]
Length = 181
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D DR + A + D + +
Sbjct: 8 LIWIDLEMTGLDPERDRIIEIATLVTDAELNVLAE 42
>gi|156303079|ref|XP_001617467.1| hypothetical protein NEMVEDRAFT_v1g226058 [Nematostella vectensis]
gi|156193984|gb|EDO25367.1| predicted protein [Nematostella vectensis]
Length = 256
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 37/190 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
+D ET G DVA DR + + +V + ++ + P +P P+ + GI
Sbjct: 9 ICFFDLETTGIDVARDRIVEISVFKVFPNGN--KESKTWLVNPT---IPIPPQTTAVHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T +K + E + ++ + + G+N+ RFD R D
Sbjct: 64 TDEKVANEPTF-NELAPHVYNMIKDSD--LAGFNSDRFDIPLLAEELLRAGVD------- 113
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----GIEHVNAHDAKA 179
+D+ + + D + + T L+ A NAH A+A
Sbjct: 114 -----FDMKNRVSV------DVQTIFHKKEERT------LSAAYKFYCNQSLENAHSAEA 156
Query: 180 DVYATLALVW 189
D AT ++
Sbjct: 157 DTMATYEILK 166
>gi|153808235|ref|ZP_01960903.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
gi|149129138|gb|EDM20354.1| hypothetical protein BACCAC_02523 [Bacteroides caccae ATCC 43185]
Length = 259
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 41/205 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + + P PEA
Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE--EAKTLRINPEMHI---PEASSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 60 VHGIY-DADVADCPTFKEVAKNIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALANGI----EHVN 173
+ D+ + K++ L+ A +
Sbjct: 114 -IDMSKRKFVDVQVIFH----------------------KMEQRTLSAAYKFYCEKNLED 150
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A+AD AT ++ ++ P L
Sbjct: 151 AHTAEADTRATYEVLKAQLDRYPDL 175
>gi|304382373|ref|ZP_07364875.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
gi|304336490|gb|EFM02724.1| DNA polymerase III epsilon chain [Prevotella marshii DSM 16973]
Length = 284
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +++D ET G D+ DR Q + ++V ++ F P +P E V +
Sbjct: 5 LTRPLIVFDLETTGLDLVNDRIIQLSYIKVLPDGTELRK--NIFINPERS-IPK-EVVEL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
TGIT +++ E + ++ F GYN+ FD F R D
Sbjct: 61 TGIT-DDDVKEAPTFKEMAPDLNNEFR--GCDFAGYNSNHFDIPMLAEEFLRAGID 113
>gi|242239125|ref|YP_002987306.1| ribonuclease T [Dickeya dadantii Ech703]
gi|242131182|gb|ACS85484.1| ribonuclease T [Dickeya dadantii Ech703]
Length = 225
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 60/193 (31%), Gaps = 36/193 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + + + T F +P + + +P+A+ GI P
Sbjct: 25 DVETAGFNAQTDALLEIAAVTLKMDDNGWLQPDETLHFHIEPFEGAILNPDALAFNGIDP 84
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + N I+ +N FD + R RN
Sbjct: 85 TNPLRGAVSEYEALHEIFKMVRKGIKDKGCNRGIVVAHNAAFDHSFLMAAAERCGLKRNP 144
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + S L + A + D + + A
Sbjct: 145 FHPFVTFDTTSLSGLVLGQTVLAKACITADIL----------------------FDSSQA 182
Query: 175 HDAKADVYATLAL 187
H A D T L
Sbjct: 183 HSALYDTQRTAEL 195
>gi|156934185|ref|YP_001438101.1| ribonuclease T [Cronobacter sakazakii ATCC BAA-894]
gi|166228564|sp|A7MFC6|RNT_ENTS8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|156532439|gb|ABU77265.1| hypothetical protein ESA_02012 [Cronobacter sakazakii ATCC BAA-894]
Length = 223
Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + T F +P + + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAVTLKMDADGWLTP-DETLHFHVEPFEGAILQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N I+ +N FD + R RN
Sbjct: 82 PHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFVT 148
>gi|330501616|ref|YP_004378485.1| oligoribonuclease [Pseudomonas mendocina NK-01]
gi|328915902|gb|AEB56733.1| oligoribonuclease [Pseudomonas mendocina NK-01]
Length = 180
Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G + D + A + D + +
Sbjct: 4 PSNLIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAE 41
>gi|169656602|ref|YP_001428489.2| DNA polymerase III, subunit epsilon [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica URFT1]
gi|295312420|ref|ZP_06803198.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica URFT1]
gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 238
Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 58/189 (30%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + A+ I G+T
Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYKV--EAGALAIHGLT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 70 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 126 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 171
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 172 LLADVYLAM 180
>gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
Length = 1403
Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 65/194 (33%), Gaps = 30/194 (15%)
Query: 5 FVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++I+D ET G + R Q A D + + + + KP +P
Sbjct: 2 YLIFDTETTGLPKDFNAPHTDVDNWPRLVQIAWQLHDYNGKLVSAENMI-VKPEGFTIPF 60
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
A + GI+ + AL +G+ E + + IIG+N I FD + R
Sbjct: 61 -NAEKVHGISTEIALEEGLPLNEVLEKFAVDIARSE-LIIGHN-IGFDVNIMGAEYVRTT 117
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYA----FSPDGIQWPSRDDGATSFKLQDLALANGIE 170
DS +D A Y +WP+ +
Sbjct: 118 VDSKLHE----VPTYDTKSEETAEYVGIQGGRGGKFKWPT--------LTELHTKLFSES 165
Query: 171 HVNAHDAKADVYAT 184
+AHDA DV AT
Sbjct: 166 FDDAHDAAYDVLAT 179
>gi|329961134|ref|ZP_08299389.1| exonuclease [Bacteroides fluxus YIT 12057]
gi|328532072|gb|EGF58882.1| exonuclease [Bacteroides fluxus YIT 12057]
Length = 256
Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G ++ DR + ++V + E + + E+ +
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMHIPAESSAV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
GI + + D E +R+I + G+N+ RFD F R D
Sbjct: 61 HGIY-DEDIADCPTFKEVARKIANDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD 113
>gi|332305263|ref|YP_004433114.1| Exonuclease RNase T and DNA polymerase III [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332172592|gb|AEE21846.1| Exonuclease RNase T and DNA polymerase III [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 181
Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ V D E G +D + A + D + V +D+ L
Sbjct: 5 AQNLVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDEVL 55
>gi|282859398|ref|ZP_06268505.1| exonuclease [Prevotella bivia JCVIHMP010]
gi|282587832|gb|EFB93030.1| exonuclease [Prevotella bivia JCVIHMP010]
Length = 287
Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 13/115 (11%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
+T +I+D ET G D+ DR Q + ++ + E F P PE V
Sbjct: 5 LTRPLIIFDLETTGLDLVNDRIIQISYIKAYPDGRE--ERENIFINPEKQI---PEEVIA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYR 112
+TGIT V EA + + + G+N+ RFD F R
Sbjct: 60 LTGITNAD-----VAEAPTFKEKGKELAQKFAGCDFAGFNSNRFDVPMLAEEFLR 109
>gi|125624796|ref|YP_001033279.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493604|emb|CAL98589.1| Probable ATP-dependent helicase dinG homolog [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071596|gb|ADJ60996.1| ATP-dependent helicase dinG-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 791
Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 49/235 (20%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFITGITPQK 67
D E + ++ Q + + + P +TG++ K
Sbjct: 8 DLEATDAHSSENKIIQIG-----IALVEGGKIVETYSTEVNPHEPLLPRISELTGLS-DK 61
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
L+ +E + + + + + + +N RFD F + N
Sbjct: 62 QLKSAPDFSEVASEVRKLLTD--SVFVAHNA-RFDYGLLEKSFLNAGLE------FNEML 112
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYAT 184
R D +D+ R Y +F+ L+ L+ + H + H A +D YAT
Sbjct: 113 RVDTVDLARVFY----------------PTFEKYGLEALSEKLDLAHDHPHAAVSDAYAT 156
Query: 185 LALVWLIREKKPKL----FEYLYDYRN------KNQLRKLIDIQNMTP----LVH 225
L+ I EK KL E L + + K+ L++ +D + P +VH
Sbjct: 157 AELLIRIEEKIQKLPRSVLEELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVH 211
>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
Length = 1437
Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 27/200 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V+V E I+ E F + +TG
Sbjct: 419 ETYVVFDVETTGLSAVYDTIIELAAVKVKGG-EIIDKFEAFA---NPHRPLSATIIELTG 474
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + I F I+ +N FD + N+ Y+ + +
Sbjct: 475 ITDDMLQDA----PDVVDVIRDFRVRIGDDILVAHNASFDMGFL-NVAYKKLLEVEKA-- 527
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P+ + +L L IE H A D
Sbjct: 528 KNP-----VIDTLELGRFLYPE----------FKNHRLNTLCKKFDIELTQHHRAIYDTE 572
Query: 183 AT-LALVWLIREKKPKLFEY 201
AT L+ ++++ K +Y
Sbjct: 573 ATAYLLLKMLKDAAEKGIQY 592
>gi|89256347|ref|YP_513709.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica LVS]
gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica 257]
gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
holarctica FSC022]
gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica LVS]
gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica 257]
gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
holarctica FSC022]
Length = 238
Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 58/189 (30%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + F+C P + A+ I G+T
Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPNYKV--EAGALAIHGLT 69
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 70 NEFLADKPLFEDKVDEMI--EFLRGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 125
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D LD+ R + + L L I H H A
Sbjct: 126 VAKIVDSLDLARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 171
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 172 LLADVYLAM 180
>gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
Length = 240
Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 59/193 (30%), Gaps = 41/193 (21%)
Query: 3 NHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
N V+ D ET G + R + V E I F D
Sbjct: 10 NRIVVLDTETTGMNQEGGPHYLGHRIIEIGAV------EIINRKLTGRHFHVYIKPDREI 63
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFY 111
PEA+ + GIT + + E IHQ F ++ +N FD + F
Sbjct: 64 QPEAIQVHGITDEFLVDK--PEY---ASIHQEFLDFIKGAELVAHNA-SFDTGFMDYEFE 117
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-- 169
+ D D+ D L + + I+ P + + L L GI
Sbjct: 118 K--LDPTIGKTDDYCKVTDTLAMAKKIF---------PGKRNN-----LDVLCERYGIDN 161
Query: 170 EHVNAHDAKADVY 182
H H A D
Sbjct: 162 SHRTLHGALLDAE 174
>gi|239997082|ref|ZP_04717606.1| oligoribonuclease [Alteromonas macleodii ATCC 27126]
Length = 181
Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 55/202 (27%), Gaps = 40/202 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFI 60
++ V D E G D + A + D Q + V +DD L D +
Sbjct: 6 SNLVWIDMEMTGLDPETCVVMEIATIVTDAQLNILAEGPVIAVHQSDDVLNNMDEWCTRV 65
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
G + + + E S + F C N I D F
Sbjct: 66 HGESGLTARCRESKISVEEASAQTIAFLEQWVDAGKSPLCG---NTIGQD-----RRFMV 117
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + N D+ + + P+ + G E
Sbjct: 118 KYMPELEAYFHYRN--IDVSTIKELTRRWKPEILD--------------------GFEKK 155
Query: 173 NAHDAKADVYATLALVWLIREK 194
H A D+ ++ + REK
Sbjct: 156 GVHLALDDIRESIEEMRYYREK 177
>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
arabaticum DSM 5501]
gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
arabaticum DSM 5501]
Length = 1440
Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 40/186 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA------V 58
++++D ET G + + + +V + I+ L DPE V
Sbjct: 428 YIVFDLETTGFNPYHNEIIEIGAAKV-KDGRIIDRF---------GTLVDPETEIPERIV 477
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI ++ G + E + F T + +N+ FD + N +
Sbjct: 478 ELTGI--DNSMVAGKPKKEEALNEFLDFVGEATIVA--HNLSFDRNFINNKLQAIGESAL 533
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
NS D L++ RA+ SFKL LA N H A
Sbjct: 534 ------DNSALDTLNLARALLDLK--------------SFKLNRLAKEFDKSLDNHHRAV 573
Query: 179 ADVYAT 184
D T
Sbjct: 574 DDAEVT 579
>gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
Length = 240
Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 58/193 (30%), Gaps = 41/193 (21%)
Query: 3 NHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
N V+ D ET G + R + V E I F D
Sbjct: 10 NRIVVLDTETTGMNREGGPHYMGHRIIEIGAV------EIINRKLTGRHFHVYLKPDREI 63
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFY 111
PEAV + GIT + + E +HQ F ++ +N FD + F
Sbjct: 64 QPEAVEVHGITDEFLVDK--PEY---ASVHQEFLEFIKGAELVAHNA-PFDTGFMDYEF- 116
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-- 169
D D+ D L + + I+ P + + L L GI
Sbjct: 117 -GMLDPNIGKTDDYCKVTDTLAMAKKIF---------PGKRNN-----LDILCERYGIDN 161
Query: 170 EHVNAHDAKADVY 182
H H A D
Sbjct: 162 SHRTLHGALLDAE 174
>gi|319896797|ref|YP_004134991.1| oligoribonuclease [Haemophilus influenzae F3031]
gi|317432300|emb|CBY80653.1| oligoribonuclease [Haemophilus influenzae F3031]
Length = 182
Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G + +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLEPEKERIIEIATIMTDKNLNILAEGPVLAVHQSDELL 55
>gi|269219439|ref|ZP_06163293.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
gi|269211135|gb|EEZ77475.1| putative DNA polymerase III, epsilon subunit [Actinomyces sp. oral
taxon 848 str. F0332]
Length = 589
Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 26/186 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFIT 61
FV+ D ET G + + V+V E + +P ++ +T
Sbjct: 43 TFVVVDLETTGAKPGPESITEIGAVKVRGG-ETVGEFSTLVNPGQPIPAFITS-----LT 96
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT R + A I + P+T + +N RFD + + F
Sbjct: 97 GITTAMTARAPRIAAVIPSLIEFLCAGPSTVVAAHNA-RFDVGHLKAAF----------- 144
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ W + V+ + D +FKL LA A G H A D
Sbjct: 145 -AGADFTWPSVRVLDTVALARRA-----FSSDEVPNFKLSTLAGACGATTAPNHRALDDA 198
Query: 182 YATLAL 187
AT+ +
Sbjct: 199 RATVDV 204
>gi|260597773|ref|YP_003210344.1| ribonuclease T [Cronobacter turicensis z3032]
gi|260216950|emb|CBA30569.1| Ribonuclease T [Cronobacter turicensis z3032]
Length = 223
Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + T F +P + + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAVTLKMDADGWLTP-DETLHFHVEPFEGAILQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N I+ +N FD + R RN
Sbjct: 82 PHNPLRGAVSEYDALHAIFKMVRKGMKESNCNRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFVT 148
>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
2782]
gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
2782]
Length = 1433
Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 46/203 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
+ FV++D ET G + D+ + V+V R + ++ F +P V +T
Sbjct: 420 DDFVVFDIETTGLNPHQDKITEIGAVKV-RNGQIVDRFSAF---VNPGVSIPS-FIVKLT 474
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IFYRNFY 115
GIT VE EF I + ++ +N FD + + +
Sbjct: 475 GITDDMVKDAPPVEQVLNEFMEFIQ------GSVLVAHNA-NFDVGFIKQNAKLMGEKVK 527
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ Y +D + P+ G +KL +A IE N H
Sbjct: 528 NPY-------------IDTLELCRKMFPEL--------GR--YKLNIVAKHLKIELENHH 564
Query: 176 DAKADVYAT----LALVWLIREK 194
A D AT + + +++EK
Sbjct: 565 RAVDDSMATAKIFMHCINILKEK 587
>gi|188582299|ref|YP_001925744.1| DNA polymerase III subunit epsilon [Methylobacterium populi BJ001]
gi|179345797|gb|ACB81209.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium populi
BJ001]
Length = 298
Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 63/187 (33%), Gaps = 44/187 (23%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ-------WEKIESTEVFFCKPADDYLPDPEAVFIT 61
D ET G D D + A + +S + +P++ PE IT
Sbjct: 48 DVETTGLDPQRDEIIELA--MTPFNYGLDGTVFSVGDSFQGLR-QPSEPI--TPEITAIT 102
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS-RNIFYRNFYDSYRW 120
GIT + + AE ++ F+ P + +I +N FD + R
Sbjct: 103 GITNEMVAGQVIDPAEVAK-----FAAPASLVIAHNA-AFDRRFLERFS----------- 145
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
D+ + S I W +G KL LA A G + H A D
Sbjct: 146 ---------DVFSTKPWACSLS--QIDW--AAEGFEGAKLAYLAQAAGFFYDR-HRAMHD 191
Query: 181 VYATLAL 187
AT+ L
Sbjct: 192 CLATVEL 198
>gi|145588712|ref|YP_001155309.1| oligoribonuclease [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047118|gb|ABP33745.1| Exonuclease, RNase T and DNA polymerase III [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 195
Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 60/203 (29%), Gaps = 40/203 (19%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ H + D E G + +R + A + D I + V+ D L +A
Sbjct: 16 SEHLIWVDMEMSGLNPETERILEIAIIVTDAHLNTIATAPVWVVHQDDAILDAMDAW--N 73
Query: 62 GITPQK----------ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
T + L + VEAE + + + N I D F
Sbjct: 74 KGTHGRSGLIDKVKTSTLDEAAVEAECIA-FLKQYIKAGIAPMCGNTIGQD-----RRFM 127
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ + N D+ + + P+ ++ G
Sbjct: 128 AKYMPKLEAYFHYRN--VDVSTLKELCKRWHPELVK--------------------GFTK 165
Query: 172 VNAHDAKADVYATLALVWLIREK 194
AH A AD+ ++ + REK
Sbjct: 166 NQAHTALADIEESIEELKYYREK 188
>gi|193212860|ref|YP_001998813.1| DNA polymerase III subunit epsilon [Chlorobaculum parvum NCIB 8327]
gi|193086337|gb|ACF11613.1| DNA polymerase III, epsilon subunit [Chlorobaculum parvum NCIB
8327]
Length = 208
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 47/223 (21%), Positives = 78/223 (34%), Gaps = 45/223 (20%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ V+ D+ET G DR + V ++ ++ + + P
Sbjct: 6 ADSVVVLDFETTGLSPQYGDRAIEIGAVLLENG-VIVDRFQRL---MNPGFRISPFIESY 61
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN----NIRFDDYYSRNIFYRNFYD 116
TGIT + + E + FS I G+N N FD + R
Sbjct: 62 TGITNEMLKVEPPCE-----EVMAGFSD---FIAGHNIVAHNASFDRRFLDFELKRA--- 110
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNAH 175
R +++ LL R IY +P+ KLQ L GI + + H
Sbjct: 111 --RRAYEGDCCCSLLLS--RRIYQDAPNH-------------KLQTLVNHAGIPKVGSFH 153
Query: 176 DAKADVYAT----LALVWLIREK---KPKLFEYLYDYRNKNQL 211
A AD T L+++ IR+ + F+ L + ++L
Sbjct: 154 RALADAEMTAHLWLSMIDRIRQHYGVQAIFFDQLTELSKIDKL 196
>gi|170050189|ref|XP_001859612.1| oligoribonuclease [Culex quinquefasciatus]
gi|167871717|gb|EDS35100.1| oligoribonuclease [Culex quinquefasciatus]
Length = 214
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++ V D E G +V DR + A + ++ + +E D +
Sbjct: 36 HNLVWIDLEMTGLNVETDRIIEIACIVTNKNLDVLER--------GPDIVIH 79
>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans
ATCC 25259]
gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
ATCC 25259]
Length = 232
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D A R + A V + + + P D D A+ + GITP+
Sbjct: 7 DTETTGLDPAQGHRIIEVAAVEM-VNRRLTGNHLHRYVNPDRDI--DAGAMQVHGITPEF 63
Query: 68 ALRD---GVVEAEFSRRI 82
G + EF I
Sbjct: 64 LQDKPRFGDIAREFVDFI 81
>gi|50120858|ref|YP_050025.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
gi|81827142|sp|Q6D5W0|RNT_ERWCT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|49611384|emb|CAG74831.1| ribonuclease T [Pectobacterium atrosepticum SCRI1043]
Length = 223
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + + T F +P + + +P A+ GI
Sbjct: 23 DVETAGFNAKTDALLEVAAVTLKMDQDGWLQP-DETLHFHVEPFEGAILEPAALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 82 PTNPLRGAVSEYDALHEIFKVVRKGIKDRGCNRAIIVAHNATFDHSFMAAAAERCSLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|15617165|ref|NP_240378.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|11133762|sp|P57637|ORN_BUCAI RecName: Full=Oligoribonuclease
gi|25338349|pir||H84996 oligoribonuclease [imported] - Buchnera sp. (strain APS)
gi|10039230|dbj|BAB13264.1| oligoribonuclease [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 184
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYL 52
+ + D E G + + R + A + D I + + + L
Sbjct: 6 KNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAEGPVIPIYQKKEHIL 56
>gi|225076263|ref|ZP_03719462.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
NRL30031/H210]
gi|224952387|gb|EEG33596.1| hypothetical protein NEIFLAOT_01303 [Neisseria flavescens
NRL30031/H210]
Length = 463
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 30/193 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + DR + A VR ++ V C+ +++ +TGI +
Sbjct: 25 DLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPCRSIPEFV-----ARLTGI-HDET 78
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+++ V A+ + + ++ +N+ RFD + R+ F R D S
Sbjct: 79 VKNAPVFADIAADLLPLLQ--GAVVVAHNS-RFDYTFLRHEFARIHTDFAAPS------- 128
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
L ++ P+ S L + GI+ N H A DV A +
Sbjct: 129 ---LCTVQLSRRLYPEFY--------KHS--LDSIIERTGIQTANRHRAMTDVAALCDYL 175
Query: 189 WL-IREKKPKLFE 200
L + EK + ++
Sbjct: 176 ELSLAEKNHQQWD 188
>gi|219681916|ref|YP_002468302.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|219682471|ref|YP_002468855.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|257471622|ref|ZP_05635621.1| oligoribonuclease [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|219622204|gb|ACL30360.1| oligoribonuclease [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|219624759|gb|ACL30914.1| oligoribonuclease [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|311086294|gb|ADP66376.1| oligoribonuclease [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311087458|gb|ADP67538.1| oligoribonuclease [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
Length = 184
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYL 52
+ + D E G + + R + A + D I + + + L
Sbjct: 6 KNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAEGPVIPIYQKKEHIL 56
>gi|116512711|ref|YP_811618.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
gi|116108365|gb|ABJ73505.1| Rad3-related DNA helicase [Lactococcus lactis subsp. cremoris SK11]
Length = 791
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 81/235 (34%), Gaps = 49/235 (20%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFITGITPQK 67
D E + ++ Q + + + P +TG++ K
Sbjct: 8 DLEATDAHSSENKIIQIG-----IALVEGGKIVETYSTEVNPHEPLLPRISELTGLS-DK 61
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
L+ +E + + + + + + +N RFD F + N
Sbjct: 62 QLKSAPDFSEVASEVRKLLTD--SVFVAHNA-RFDYGLLEKSFLNAGLE------FNEML 112
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYAT 184
R D +D+ R Y +F+ L+ L+ + H + H A +D YAT
Sbjct: 113 RVDTVDLARVFY----------------PTFEKYGLEALSEKLDLAHDHPHAAVSDAYAT 156
Query: 185 LALVWLIREKKPKL----FEYLYDYRN------KNQLRKLIDIQNMTP----LVH 225
L+ I EK KL E L + + K+ L++ +D + P +VH
Sbjct: 157 AELLIRIEEKIQKLPRSVLEELLRHSDNLLFESKSFLQEQLDKTKIRPAAFKVVH 211
>gi|224373045|ref|YP_002607417.1| exonuclease [Nautilia profundicola AmH]
gi|223588855|gb|ACM92591.1| exonuclease [Nautilia profundicola AmH]
Length = 203
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 56/176 (31%), Gaps = 20/176 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D V V + F KP+ + E++ I ITP
Sbjct: 35 DTETTGLDRKKDEIISIGAVIVKNNRVLLSRKFHIFVKPSKEL--SIESIKIHKITPDML 92
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+E E + ++ F N ++GY + FD N N +
Sbjct: 93 --KNALEPETAIKMFLNFIK-NRPLVGY-YLEFDVAML------NKLTKRYLGIKLPNRQ 142
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+ + A+Y G+ D + + + + HDA D T
Sbjct: 143 IE----VSAVYYDKKIGLIPQKHID----LRFDSIMKDLNLPIIGKHDALNDAIMT 190
>gi|163755942|ref|ZP_02163059.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
gi|161324113|gb|EDP95445.1| putative DNA polymerase III epsilon chain [Kordia algicida OT-1]
Length = 257
Score = 44.4 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ N +D ET G +VA DR + A ++V + ++ + P +P P E
Sbjct: 5 LKNPICFFDLETTGVEVAKDRIVEIAILKVYPNGN--KESKTWLVNPE---MPIPAETSE 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GIT K + + E S+ I+ + + GYN+ RFD R D
Sbjct: 60 IHGITDDKVANEPTFK-ELSKEIYNMIKDSD--LAGYNSDRFDIPLLAEELLRADID--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALAN----GIEHV 172
+D+ + + D T F K++ L+ A G E
Sbjct: 114 ---------FDMKNKV---------------SIDVQTIFHKMEKRTLSAAYKFYCGKELE 149
Query: 173 NAHDAKADVYATLALVW 189
AH A+AD AT ++
Sbjct: 150 GAHGAEADTNATYEVLK 166
>gi|238855548|ref|ZP_04645851.1| DNA polymerase III [Lactobacillus jensenii 269-3]
gi|260665137|ref|ZP_05865987.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
gi|282932326|ref|ZP_06337761.1| DNA polymerase III [Lactobacillus jensenii 208-1]
gi|238831832|gb|EEQ24166.1| DNA polymerase III [Lactobacillus jensenii 269-3]
gi|260561191|gb|EEX27165.1| DNA polymerase III [Lactobacillus jensenii SJ-7A-US]
gi|281303547|gb|EFA95714.1| DNA polymerase III [Lactobacillus jensenii 208-1]
Length = 316
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT---GITP 65
D ET G DR + AG++V R + ++ P ++ +P FIT GI
Sbjct: 39 DIETTGLSPYRDRVTELAGIKV-RNGKVVDKYSQLVKHPKNNKVPQ----FITKLNGIDE 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ L G+ E F I+GYN + FD + ++ + +
Sbjct: 94 KLILTQGIPVKEAITDFRNFIGE--DVIVGYN-VNFDLNFIYDLCEKFNLERLS------ 144
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N+ D+L R + + +L D GI AH D
Sbjct: 145 NNYIDVLHFSRVFF-------------KKESHNRLLDCIQRLGISESEAHRGLKD 186
>gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
Length = 229
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 56/187 (29%), Gaps = 41/187 (21%)
Query: 9 DYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVF 59
D ET G + R + V E I F D PEA+
Sbjct: 5 DTETTGMNQEGGPHYLGHRIIEIGAV------EIINRKLTGRHFHVYIKPDREIQPEAIQ 58
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GIT + + E IHQ F ++ +N FD + F + D
Sbjct: 59 VHGITDEFLVDK--PEY---ASIHQEFLDFIKGAELVAHNA-PFDTGFMDYEFEK--LDP 110
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAH 175
D+ D L + + I+ P + + L L GI H H
Sbjct: 111 IIGKTDDYCKVTDTLAMAKKIF---------PGKRNN-----LDVLCERYGIDNSHRTLH 156
Query: 176 DAKADVY 182
A D
Sbjct: 157 GALLDAE 163
>gi|260906794|ref|ZP_05915116.1| hypothetical protein BlinB_15797 [Brevibacterium linens BL2]
Length = 581
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 61/193 (31%), Gaps = 28/193 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FVI D ET G + V+ E + + KP + + P +TGI
Sbjct: 30 TFVIVDLETTGTTAGKSEITEIGAVKTRGG-EVLGEFQSL-VKPEESVI-SPFVARLTGI 86
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T R + F ++ +N FD + R+ + +
Sbjct: 87 THAMVDDAPS-----IRSVLPSFLEFCVGAVLVAHNA-PFDIGFIRSACEK-----LDYH 135
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W +LD + D + KL LA G E H A +D
Sbjct: 136 WPQPT----VLDTVTLSRRV--------VSRDEVRNHKLSTLAAHFGTEVSPDHRALSDA 183
Query: 182 YATLALVWLIREK 194
AT ++ + E+
Sbjct: 184 KATGEVLHRVLER 196
>gi|77456743|ref|YP_346248.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
gi|123606183|sp|Q3KIZ7|ORN_PSEPF RecName: Full=Oligoribonuclease
gi|77380746|gb|ABA72259.1| oligoribonuclease [Pseudomonas fluorescens Pf0-1]
Length = 180
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D D + A + D +
Sbjct: 4 PQNLIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAE 41
>gi|331005310|ref|ZP_08328699.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
gi|330420886|gb|EGG95163.1| Oligoribonuclease [gamma proteobacterium IMCC1989]
Length = 180
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 44/203 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
++ + D E G D + A + D + + +D+ L A
Sbjct: 5 DNLIWIDLEMTGLYPNDDVIIEIATIVTDSDLNILAEGPMLAIHQSDERL----AAMDEW 60
Query: 60 ------ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCI---IGYNNIRFDDYYSRNIF 110
+G+T ++ + ++ ++ F + N+I D F
Sbjct: 61 NTNQHGKSGLT-ERVRNSNISASDAEQQTIDFLKQWVPAGKSPMSGNSICQD-----RRF 114
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
N+ + + N D+ V + P+ ++ G
Sbjct: 115 LANYMPALENYFHYRN--LDVSSVKELARRWKPESMK--------------------GFT 152
Query: 171 HVNAHDAKADVYATLALVWLIRE 193
AH A DV ++ + R+
Sbjct: 153 KSGAHLALDDVRDSINELKHYRK 175
>gi|261821926|ref|YP_003260032.1| ribonuclease T [Pectobacterium wasabiae WPP163]
gi|261605939|gb|ACX88425.1| ribonuclease T [Pectobacterium wasabiae WPP163]
Length = 223
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + + T F +P + + +P A+ GI
Sbjct: 23 DVETAGFNAKTDALLEVAAVTLKMDQDGWLQP-DETLHFHVEPFEGAILEPAALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 82 PTNPLRGAVSEYDALHEIFKVVRKGIKDQGCNRAIIVAHNATFDHSFMAAAADRCSLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|224826734|ref|ZP_03699834.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
gi|224600954|gb|EEG07137.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
Length = 707
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 43/202 (21%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPE-AV 58
+ ++D ET G + A D Q R + + F + D P PE +V
Sbjct: 516 SYTVFDTETTGLEPAAGDEIIQIGATR------IVNRRLLQHEGFEQLIDPRRPLPEDSV 569
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I GITP+ G + + + +T ++ +N FD R + +
Sbjct: 570 KIHGITPEMLA--GQPPLDTVLPAFRAYCA-DTVLVAHNA-AFD---MRFLQLKEASTGV 622
Query: 119 RWSWDNGNSRWD--LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
R+D +LD + P+ S +L+ +A G+ + H
Sbjct: 623 ---------RFDQPVLDTLLLSAVLHPN----------QESHRLEAIAERLGVTIIGRHT 663
Query: 177 AKADVYAT----LALVWLIREK 194
A D T L ++ L+ EK
Sbjct: 664 AMGDAIVTGEVFLKMIPLLAEK 685
>gi|56707385|ref|YP_169281.1| oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110669856|ref|YP_666413.1| oligoribonuclease [Francisella tularensis subsp. tularensis
FSC198]
gi|224456460|ref|ZP_03664933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370915|ref|ZP_04986920.1| oligoribonuclease [Francisella tularensis subsp. tularensis
FSC033]
gi|254874223|ref|ZP_05246933.1| oligoribonuclease [Francisella tularensis subsp. tularensis
MA00-2987]
gi|81820821|sp|Q5NI61|ORN_FRATT RecName: Full=Oligoribonuclease
gi|123169637|sp|Q14JL3|ORN_FRAT1 RecName: Full=Oligoribonuclease
gi|56603877|emb|CAG44861.1| Oligoribonuclease [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110320189|emb|CAL08244.1| Oligoribonuclease [Francisella tularensis subsp. tularensis
FSC198]
gi|151569158|gb|EDN34812.1| oligoribonuclease [Francisella tularensis subsp. tularensis
FSC033]
gi|254840222|gb|EET18658.1| oligoribonuclease [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158524|gb|ADA77915.1| oligoribonuclease [Francisella tularensis subsp. tularensis
NE061598]
Length = 178
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI--ESTEVFF 44
++ + D E G DV + + A + D+ I +
Sbjct: 4 ADNLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIY 48
>gi|253688762|ref|YP_003017952.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251755340|gb|ACT13416.1| ribonuclease T [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 223
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + + T F +P + + +P A+ GI
Sbjct: 23 DVETAGFNAKTDALLEVAAVTLKMDQDGWLQP-DETLHFHVEPFEGAILEPAALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 82 PTNPLRGAVSEYDALHEIFKVVRKGIKEQNCNRAIIVAHNATFDHSFMMAAAERCSLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|119357378|ref|YP_912022.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
DSM 266]
gi|119354727|gb|ABL65598.1| DNA polymerase III, epsilon subunit [Chlorobium phaeobacteroides
DSM 266]
Length = 219
Score = 44.4 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 46/199 (23%), Positives = 64/199 (32%), Gaps = 50/199 (25%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIES------TEVFFCKPADDYLP 53
M + V+ D+ET G DR + V V+ E ++ + + Y
Sbjct: 5 MADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHG-EIVDRYQKLMNPGFRISRFIESY-- 61
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN----NIRFDDYYSRNI 109
TGIT + E + FS I G+N N FD +
Sbjct: 62 -------TGITNEMLSGQPCCE-----EVMTEFSE---FIAGHNIVAHNASFDRRFLDFE 106
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
R + ++ L V R IY SP+ KLQ L GI
Sbjct: 107 LKRA-----KRVYEGACCCS--LLVSRRIYQDSPNH-------------KLQTLVSHAGI 146
Query: 170 -EHVNAHDAKADVYATLAL 187
E + H A AD T L
Sbjct: 147 PEIGSFHRALADAEMTAHL 165
>gi|218130099|ref|ZP_03458903.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
gi|317476592|ref|ZP_07935837.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
gi|217987603|gb|EEC53931.1| hypothetical protein BACEGG_01686 [Bacteroides eggerthii DSM 20697]
gi|316907188|gb|EFV28897.1| exonuclease [Bacteroides eggerthii 1_2_48FAA]
Length = 256
Score = 44.4 bits (104), Expect = 0.042, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 39/204 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G ++ DR + ++V + E + + EA +
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ESKTMRINPEMHIPAEASAV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI + + D E +R I + G+N+ RFD F R D
Sbjct: 61 HGIY-DEDVADCPTFKEVARSIANDI--EGCDLAGFNSNRFDIPVLAEEFLRADVDI--- 114
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVNA 174
SR +DV + K++ L+ A G +A
Sbjct: 115 ----DMSRRKFVDVQVIFH-------------------KMEQRTLSAAYKFYCGKNLEDA 151
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A+AD AT ++ ++ P+L
Sbjct: 152 HTAEADTRATYEVLMSQLDRYPEL 175
>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
Length = 1438
Score = 44.4 bits (104), Expect = 0.042, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 39/149 (26%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59
F I+D ET G + D E IE + + + + ++
Sbjct: 394 FSIFDLETTGLNPIFD--------------EIIEIFVLKYS--SGTVIDHYYSLIRCNKK 437
Query: 60 -------ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+T IT +K G + + + F S T +I +N I FD + + +
Sbjct: 438 LRKEIINLTHITEEKLNMSGRDKLTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRK 495
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
+ + DN +LD +R A
Sbjct: 496 SGLEPL----DNP-----ILDTLRLCKAL 515
>gi|85706434|ref|ZP_01037528.1| putative exonuclease [Roseovarius sp. 217]
gi|85669207|gb|EAQ24074.1| putative exonuclease [Roseovarius sp. 217]
Length = 688
Score = 44.4 bits (104), Expect = 0.042, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 4 HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G D Q AG+R+ +I E F P + +
Sbjct: 493 SFVVFDTETTGLSPRGGDEIVQIAGLRIVNG--RILRGECFDMLVNPGRAIPPASTRVHH 550
Query: 63 ITPQKAL-RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR---NIFYRNFYDSY 118
I+ + G+VEA RR H F ++ +N FD + R + R F +
Sbjct: 551 ISDEMVQGAPGIVEAG--RRFHD-FCQ-GAVLVAHNA-PFDLAFLRLKEKVIGRRFDNPV 605
Query: 119 RWS 121
+
Sbjct: 606 LCT 608
>gi|239983070|ref|ZP_04705594.1| DNA polymerase III subunit epsilon [Streptomyces albus J1074]
Length = 237
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G D R A + V AD +P P A + GIT
Sbjct: 11 FDLETTGTDPREARIVTAAVIEVAD-----GERRGHRTWLADPGIPIPAGATAVHGITDA 65
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+A +G + + + + ++ YN FD R+ S
Sbjct: 66 RAAAEGSPPDRVADAVAEALTGYWRAGVPVVAYNA-PFDLTLLAAELRRHRLPSLA 120
>gi|153815178|ref|ZP_01967846.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
gi|145847437|gb|EDK24355.1| hypothetical protein RUMTOR_01410 [Ruminococcus torques ATCC 27756]
Length = 279
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 36/206 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M ++ +D ET G D + + ++V K+ + F KP + L P +
Sbjct: 35 MLKSYIAFDLETTGLDPMNNEIIEIGALKVRDG--KVSERFMEFIKPQE--LISPAITGL 90
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGI+ D V A +R + F +IG+N I FD +++ R +
Sbjct: 91 TGIS-----NDMVASARPARSVITDFIDFCEEDILIGHNII-FDYSFTKCTAAREGL-PF 143
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+D ++ P+ S L L IE+ AH A
Sbjct: 144 EKMG---------IDTLKIAKKVHPEL----------ESKSLSALCEHYKIENKAAHRAY 184
Query: 179 ADVYATLALVWLIRE----KKPKLFE 200
D AT L + PK F+
Sbjct: 185 FDALATAKLYQTLSHYFEPDNPKTFK 210
>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
Length = 1388
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 44/225 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI---T 61
FV++D ET G + A++ + V++ + + + KP P + F T
Sbjct: 382 FVVFDLETTGLEPAMNEIIEIGAVKI-KNMKIVSKFH-RLVKPR-----KPVSNFTSNFT 434
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT Q + +E +F I ++ +N I FD + R R + + +
Sbjct: 435 GITNQMLEVEKPIEEVLPQFLSFIE------GAVLVAHNAI-FDYRFIREWVRRVYNEHF 487
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++ +D + A S + S +L EH AH+
Sbjct: 488 EQTY---------IDTV----ALSKSLLTLKSYGLAKVVEEL----KLGSFEHHRAHE-- 528
Query: 179 ADVYAT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTP 222
D T L + LI K + E + +L+K ID + + P
Sbjct: 529 -DANITALVFLKLIEMAKSQNVE---MLSDLEKLKKFIDFKRIQP 569
>gi|146311450|ref|YP_001176524.1| ribonuclease T [Enterobacter sp. 638]
gi|166991090|sp|A4W9U3|RNT_ENT38 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|145318326|gb|ABP60473.1| RNAse T [Enterobacter sp. 638]
Length = 224
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 60/205 (29%), Gaps = 38/205 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLTP-DTTLHFHVDPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQF----FSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I++ N I+ +N FD + R RN
Sbjct: 82 PHNPLRGAVSEYDALHAIYKMVRKGMKDSNCNRAIMVAHNATFDHSFMMAASERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACITAGIDFDGN-----------------Q 179
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D T L I + +L
Sbjct: 180 AHSALYDTERTAELFCEIVNRWKRL 204
>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
Length = 1438
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 39/149 (26%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59
F I+D ET G + D E IE + + + + ++
Sbjct: 394 FSIFDLETTGLNPIFD--------------EIIEIFVLKYS--SGTVIDHYYSLIRCNKK 437
Query: 60 -------ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+T IT +K G + + + F S T +I +N I FD + + +
Sbjct: 438 LRKEIINLTHITEEKLNMSGRDKLTVLQEVRDFVS--GTVLIAHNGIDFDFPFLNSELRK 495
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAF 141
+ + DN +LD +R A
Sbjct: 496 SGLEPL----DNP-----ILDTLRLCKAL 515
>gi|322788644|gb|EFZ14245.1| hypothetical protein SINV_00413 [Solenopsis invicta]
Length = 189
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 2 TNHF-VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
++H+ V D E G DV D + A + D+ I
Sbjct: 17 SDHYIVWIDLEMTGLDVDKDHILEIACLVTDKNLNVISEDLNI 59
>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 1445
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E I+ + F + + +T IT
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++ EA ++ F+ C +N++FD + R Y
Sbjct: 482 -DEMVQAADDEAVVIKQFMDFYGNDPLCG---HNVQFDVGFVDAALKRCGYPEI------ 531
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L L + + H A D AT
Sbjct: 532 ---SQPVVDTLEVSRLLHP--------EQSRHT--LDSLCRKYNVALEHHHRANQDAEAT 578
>gi|297205524|ref|ZP_06922920.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
gi|297150102|gb|EFH30399.1| DNA polymerase III [Lactobacillus jensenii JV-V16]
Length = 317
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 56/299 (18%), Positives = 103/299 (34%), Gaps = 44/299 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT---GITP 65
D ET G + DR + AG++V R + + P D+ +P FIT GI
Sbjct: 39 DIETTGLSLYRDRITELAGIKV-RNGKVVAEYSQLVKYPKDNKVPR----FITKLNGIDE 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
L +G+ E F I+GYN + FD + + F
Sbjct: 94 ALILANGMPVKEAITEFRNFIG--GDVIVGYN-VNFDLNFI-YDLWEKFQLKKL-----S 144
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
N+ D+L R + + +L D GI AH D T
Sbjct: 145 NNYIDVLHFSRVFF-------------KKESHNRLLDCIRRLGISESEAHRGLKDSLDTK 191
Query: 186 ALVWLIREK-KPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
A+ + R++ P++ + K+ L+ + + + P ++ +
Sbjct: 192 AVFDIYRKQFTPEMLNEV-----KDSLKSCVLTEEI-PFEYLIKRNPLKNK---TVVFAG 242
Query: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQL----AKRLFTSHDELKGLVPVPIKEVHLNK 299
+ + +I N+ G +R D L S+ EL+ + + + +++
Sbjct: 243 TVNKEELELIVSNMGGQVRDHVDSTIDYLVMGDKDFFSKSNSELQKARRLISEGIKISR 301
>gi|149371249|ref|ZP_01890735.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
gi|149355387|gb|EDM43946.1| DNA Pol III Epsilon Chain [unidentified eubacterium SCB49]
Length = 257
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 45/198 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
++ +D ET G ++A DR + A ++V + E F K +P P+
Sbjct: 5 LSKPICFFDLETTGINIAKDRIVEIAILKVFPN----GNKESFVWKVNP-TIPIPKVTSD 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GIT + + + + E + ++ + + G+N+ RFD R D
Sbjct: 60 IHGITDEMVVNEPTFK-ELAPKVFALIKDSD--LAGFNSNRFDIPLLAEELLRAEIDYDL 116
Query: 120 WSWDNGNSRWDLLDVMR--------AIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ D+ + A Y F D +DL
Sbjct: 117 ----KKAASVDVQTIFHKKEKRTLEAAYKFYCD----------------EDL-------- 148
Query: 172 VNAHDAKADVYATLALVW 189
++AH A AD AT ++
Sbjct: 149 LDAHSAAADTNATFEVLK 166
>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 1411
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E I+ + F + + +T IT
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 447
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++ EA ++ F+ C +N++FD + R Y
Sbjct: 448 -DEMVQAADDEAVVIKQFMDFYGNDPLCG---HNVQFDVGFVDAALKRCGYPEI------ 497
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L L + + H A D AT
Sbjct: 498 ---SQPVVDTLEVSRLLHP--------EQSRHT--LDSLCRKYNVALEHHHRANQDAEAT 544
>gi|195449894|ref|XP_002072273.1| GK22765 [Drosophila willistoni]
gi|194168358|gb|EDW83259.1| GK22765 [Drosophila willistoni]
Length = 190
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 22/153 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPEA 57
V D E G D+ D+ + + + D+ I + + + + + A
Sbjct: 18 VWMDLEMTGLDIQKDKILEVSCLITDKDLNIQSNGLSFAINHPQEVYEQMNEWCIKQHYA 77
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
+G+ + V I + TC++ N++ D R Y+
Sbjct: 78 ---SGL-VDSCKKSTVTPEAAEDLILTYLKQNIPEKTCVLAGNSVYMD----RLFLYKYM 129
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQ 147
+ + D+ + ++PD I+
Sbjct: 130 --PIVNKYLHY-RIVDVSTIKELARRWNPDIIE 159
>gi|195392333|ref|XP_002054812.1| GJ24646 [Drosophila virilis]
gi|194152898|gb|EDW68332.1| GJ24646 [Drosophila virilis]
Length = 187
Score = 44.4 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
+ V D E G + D+ + A + D+Q F +
Sbjct: 12 SDIVWMDLEMTGLSIDKDQILEVACIITDKQLNIKAECLCFAIRHPP 58
>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
Length = 762
Score = 44.4 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 407 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 462
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 463 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 512
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 513 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 559
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 560 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 588
>gi|295102295|emb|CBK99840.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Faecalibacterium prausnitzii L2-6]
Length = 337
Score = 44.4 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 40/217 (18%), Positives = 70/217 (32%), Gaps = 60/217 (27%)
Query: 1 MTNHFVIYDYE-----------------TFGRDVALDRPAQFAGVRVDRQWEKIE----- 38
M + V++D E TF + V++D ++
Sbjct: 1 MPRNLVLFDLEWNIGYQPFIFNYHGVQQTF-----RGEIIEIGAVKIDEDANVLDTFSIH 55
Query: 39 -STEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN 97
+F C +TG+T Q+ L G + RR ++ P+ +
Sbjct: 56 LRPRIFRC-LQHHI------AKVTGLT-QEDLDKGEPIIQGLRRFMKW-CGPDAEFAEWG 106
Query: 98 NIRFDD-YYS-RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
DD +N+F N +S W +DL + Y P ++
Sbjct: 107 ---MDDVPVLKQNLFLCNLDESCPTVW------YDLQQLFLREY---------PRKEGEG 148
Query: 156 TSFKLQDLALANGIEHVN-AHDAKADVYATLALVWLI 191
KL+++ GI HDA +D T L ++
Sbjct: 149 --MKLENVVTRMGIPLERPFHDALSDTLYTADLCRML 183
>gi|295698463|ref|YP_003603118.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
gi|291157191|gb|ADD79636.1| oligoribonuclease [Candidatus Riesia pediculicola USDA]
Length = 184
Score = 44.4 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G + D+ + A + D Q +
Sbjct: 6 KNLIWIDLEMTGLNPKRDKIIEIATIITDSQINILSE 42
>gi|59712989|ref|YP_205765.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
gi|59481090|gb|AAW86877.1| DNA polymerase III, epsilon-subunit paralog (3' to 5' exonuclease)
[Vibrio fischeri ES114]
Length = 213
Score = 44.4 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 20/175 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET + A +++ ++ +++ K + +++ I + Q
Sbjct: 34 DCETTSLNPNHAELVSIAAIKIKN--NRVLTSQTIHLKLTPPQSLNSDSIKIHQLRHQDL 91
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G+ E + ++ +F N I+GY+ IR+D R+F S
Sbjct: 92 H-HGLSEQQAMTQLLEFIG--NRHIVGYH-IRYDKKILDRACLRHFSHPLPNS------- 140
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
L++V + + D ++ ++ G+ + HDA D A
Sbjct: 141 --LIEVSHIYHNKLERLLPNAYYD-----LSIEAISKHLGLPQADRHDALEDAIA 188
>gi|149201054|ref|ZP_01878029.1| putative exonuclease [Roseovarius sp. TM1035]
gi|149145387|gb|EDM33413.1| putative exonuclease [Roseovarius sp. TM1035]
Length = 688
Score = 44.4 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 10/122 (8%)
Query: 4 HFVIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G D Q AG+R+ +I E F P + +
Sbjct: 493 SFVVFDTETTGLSPRGGDEIVQIAGLRIVNG--RILRGESFDMLVNPGRPIPPASTRVHH 550
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR---NIFYRNFYDSYR 119
I+ ++D E RR H F ++ +N FD + R + R F +
Sbjct: 551 IS-DDMVQDAPDIIEAGRRFHD-FCQ-GAVLVAHNA-PFDLAFLRLKEKVIGRRFDNPVL 606
Query: 120 WS 121
+
Sbjct: 607 CT 608
>gi|37200012|dbj|BAC95841.1| oligoribonuclease [Vibrio vulnificus YJ016]
Length = 227
Score = 44.4 bits (104), Expect = 0.045, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + + + A + D + +
Sbjct: 52 QNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAE 88
>gi|311087943|gb|ADP68022.1| oligoribonuclease [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 178
Score = 44.4 bits (104), Expect = 0.045, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYL 52
+ + D E G + + R + A + D I + + + L
Sbjct: 6 KNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAEGPVIPIYQKKEHIL 56
>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
Length = 758
Score = 44.4 bits (104), Expect = 0.045, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 34/216 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI+D ET G D + V++ + I+ + F +L + +T IT
Sbjct: 403 YVIFDVETTGLSSVYDTIIEIGAVKM-KDGVVIDRFDKF---INPHHLLSDTTINLTSIT 458
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ +++ E R+ +F+ C +N++FD + R D
Sbjct: 459 -DEMVQNADDENIVIRQFQEFYQDLPLCG---HNVQFDIGFLNAALRRCNMDII------ 508
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ + L LA + + H A D AT
Sbjct: 509 ---TQPVVDTLEVSRLLHPEQT--------RHT--LDSLAKKYNVVLEHHHRANQDAEAT 555
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L+ KL + Y+ + L K+ D
Sbjct: 556 GYLM-------FKLLDAFYERFQEANLGKMNDYAKF 584
>gi|307822745|ref|ZP_07652976.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
tundripaludum SV96]
gi|307736349|gb|EFO07195.1| Exonuclease RNase T and DNA polymerase III [Methylobacter
tundripaludum SV96]
Length = 181
Score = 44.4 bits (104), Expect = 0.045, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
+H + D E G D D + A + D+ +
Sbjct: 5 PSHLIWIDLEMTGLDPDNDLIIEIATIITDKDLNIL 40
>gi|197335542|ref|YP_002157176.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
gi|197317032|gb|ACH66479.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
Length = 213
Score = 44.4 bits (104), Expect = 0.045, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 62/176 (35%), Gaps = 22/176 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET + A +++ ++ +++ K + +++ I + Q
Sbjct: 34 DCETTSLNPNHAELVSIAAIKIKN--NRVLTSQTIHLKLTPPQSLNSDSIKIHQLRHQDL 91
Query: 69 LRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G+ E + ++ +F + P I+GY+ IR+D R+F S
Sbjct: 92 H-HGLSEQQAMTQLLEFIGNRP---IVGYH-IRYDKKILDRACLRHFSHPLPNS------ 140
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
L++V + + D ++ ++ G+ HDA D A
Sbjct: 141 ---LIEVSHIYHNKLERLLPNAYYD-----LSIEAISKHLGLPQTERHDALEDAIA 188
>gi|323360067|ref|YP_004226463.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
StLB037]
gi|323276438|dbj|BAJ76583.1| DNA polymerase III, epsilon subunit [Microbacterium testaceum
StLB037]
Length = 224
Score = 44.0 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFIT 61
+D ET G DV DR +D I+ A D+L DP A I
Sbjct: 4 FDLETTGVDVVNDRIVTAHVGVLDADGHVID---------ARDWLADPGVDIPDGAAAIH 54
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT ++A DG + + S ++ YN FD ++ R+
Sbjct: 55 GITSERARADGAPAPRVVAEVVEALSALFAAGIPVVAYNA-PFDFSMLKHEAVRHGVAPI 113
Query: 119 RW 120
Sbjct: 114 EA 115
>gi|257467741|ref|ZP_05631837.1| Exonuclease RNase T and DNA polymerase III [Fusobacterium ulcerans
ATCC 49185]
gi|317062034|ref|ZP_07926519.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
gi|313687710|gb|EFS24545.1| exonuclease [Fusobacterium ulcerans ATCC 49185]
Length = 186
Score = 44.0 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 20/193 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ D ET G Q +G+ +++ F+ KP EA+ I G T
Sbjct: 3 ILFVDTETGGI-TERSALIQLSGIVQIG--KEVAEEFNFYIKPFPGSEVTDEALKIQGRT 59
Query: 65 PQKALRDGVVE---AEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
++ E +F + +++ + + ++G N+RFD RN + Y
Sbjct: 60 REEVETYDSEEEVFIKFMKILNKHIDKYNKEDKFLVGGYNVRFDIDVINRFLKRNG-EKY 118
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+S+ + D L + A+ + P D KL+ GIE + AHD+
Sbjct: 119 LFSYIQA-TTLDPLQWIAALQLLK----KIPVLKDN----KLETWCNHFGIE-LKAHDSL 168
Query: 179 ADVYATLALVWLI 191
D+ AT AL +
Sbjct: 169 EDIKATKALTKKM 181
>gi|157692739|ref|YP_001487201.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus pumilus SAFR-032]
gi|157681497|gb|ABV62641.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
Length = 930
Score = 44.0 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 44/189 (23%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
FV+ D ET G D+ Q A V ++ +I + KP ++ +
Sbjct: 6 FVVVDIETTGNSPKKGDKIIQIAAVVIENG--QIVERYSKYVNPGKPIPGFIEQ-----L 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-----DYYSRNIFYRNFY 115
TGI Q + D V + ++ ++ + +N + FD D +N
Sbjct: 59 TGIQ-QHMVDDAVFFEDIAQEVYDLIQ--GAYFVAHN-VHFDLNFLNDEL--KACGKNEL 112
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D +D + P+ +G +KL +L+ + H + H
Sbjct: 113 DVLA------------IDTVEISRILYPEL-------EG---YKLTELSEELMLPHDHPH 150
Query: 176 DAKADVYAT 184
A +D T
Sbjct: 151 RADSDAEVT 159
>gi|149192489|ref|ZP_01870676.1| oligoribonuclease [Vibrio shilonii AK1]
gi|148833680|gb|EDL50730.1| oligoribonuclease [Vibrio shilonii AK1]
Length = 181
Score = 44.0 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 40/201 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
++ + D E G D + + A + D + + V +D+ L +
Sbjct: 6 DNLIWVDLEMTGLDPEQHKIIEIASIVTDSELNILAEGPVIAIHQSDEELAKMDDWCTNT 65
Query: 63 IT----PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
T + EAE ++ F C N+I D R Y+
Sbjct: 66 HTASGLVARVKDSEYDEAEAIKQTITFLEQWVPKGKSPICG---NSIGQD----RRFLYK 118
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + D+ + + P+ + G
Sbjct: 119 HM--PELEEYFHY-RYVDVSTLKELTRRWKPEVLD--------------------GFSKQ 155
Query: 173 NAHDAKADVYATLALVWLIRE 193
H A D+ ++A + RE
Sbjct: 156 GTHLALDDIRESIAELKYYRE 176
>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
2360]
gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM
1313]
Length = 1442
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 34/201 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
FV++D ET G D+ + V++ + +++ F + +P PE V +TGI
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEG-KIVDTFSTFV----NPEIPIPEFVVKLTGI 483
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T D V +A ++ F +G + + + F R+ + D
Sbjct: 484 T-----DDMVSDAPTIDKVLPEFLE----FVGTSPLVAHNAVFDTGFIRHNARLINRNVD 534
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P+ + KL +A G+ N H A D A
Sbjct: 535 NP-----VIDTLELSRQMFPELKK----------HKLDVVAKHLGVSLENHHRALDDAKA 579
Query: 184 T----LALVWLIREKKPKLFE 200
+ + ++ EK K +
Sbjct: 580 CGEIFIKCLEILAEKNVKTID 600
>gi|83649371|ref|YP_437806.1| putative exonuclease [Hahella chejuensis KCTC 2396]
gi|83637414|gb|ABC33381.1| putative exonuclease [Hahella chejuensis KCTC 2396]
Length = 189
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 63/202 (31%), Gaps = 42/202 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRP----AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
+ V+ D ET G D D+ +R ++++ P D EA
Sbjct: 15 SPQVVVLDTETTGLD---DQAEVIEVSVMDMRGKVLFDQLVRPLN----PVPD-----EA 62
Query: 58 VFITGITPQKALRDGVVE--AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
I GIT + +R+ + ++ YN FD
Sbjct: 63 ADIHGITSESLADKPNFPDVYHSLKRV-----ISGKTVVAYNA-DFDSRLLMQTCAAYGL 116
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN---GIEHV 172
W M A + + P G ++ Q LA A GIE
Sbjct: 117 PVIEADWQ---------CAMNAYTRYRKE----PDAKRGG--YRRQSLAKAAAQMGIEVH 161
Query: 173 NAHDAKADVYATLALVWLIREK 194
AH A AD + T+ ++ + K
Sbjct: 162 GAHRALADCFTTVEVIGSVYSK 183
>gi|121997034|ref|YP_001001821.1| oligoribonuclease [Halorhodospira halophila SL1]
gi|166216263|sp|A1WTK7|ORN_HALHL RecName: Full=Oligoribonuclease
gi|121588439|gb|ABM61019.1| Exonuclease, RNase T and DNA polymerase III [Halorhodospira
halophila SL1]
Length = 183
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + DR + A V D + +
Sbjct: 7 NLIWIDLEMTGLDPSRDRIIEIAVVVTDSNLDTLAE 42
>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
thermocellum ATCC 27405]
Length = 1442
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 34/201 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
FV++D ET G D+ + V++ + +++ F + +P PE V +TGI
Sbjct: 429 FVVFDIETTGLSADKDKITEIGAVKIKEG-KIVDTFSTFV----NPEIPIPEFVVKLTGI 483
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T D V +A ++ F +G + + + F R+ + D
Sbjct: 484 T-----DDMVSDAPTIDKVLPEFLE----FVGTSPLVAHNAVFDTGFIRHNARLINRNVD 534
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N ++D + P+ + KL +A G+ N H A D A
Sbjct: 535 NP-----VIDTLELSRQMFPELKK----------HKLDVVAKHLGVSLENHHRALDDAKA 579
Query: 184 T----LALVWLIREKKPKLFE 200
+ + ++ EK K +
Sbjct: 580 CGEIFIKCLEILAEKNVKTID 600
>gi|317502363|ref|ZP_07960529.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089964|ref|ZP_08338855.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316896236|gb|EFV18341.1| hypothetical protein HMPREF1026_02473 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403102|gb|EGG82665.1| hypothetical protein HMPREF1025_02438 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 245
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 36/206 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M ++ +D ET G D + + ++V K+ + F KP + L P +
Sbjct: 1 MLKSYIAFDLETTGLDPMNNEIIEIGALKVRDG--KVSERFMEFIKPQE--LISPAITGL 56
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGI+ D V A +R + F +IG+N I FD +++ R +
Sbjct: 57 TGIS-----NDMVASARPARSVITDFIDFCEEDILIGHNII-FDYSFTKCTAAREGL-PF 109
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+D ++ P+ S L L IE+ AH A
Sbjct: 110 EKMG---------IDTLKIAKKVHPEL----------ESKSLSALCEHYKIENKAAHRAY 150
Query: 179 ADVYATLALVWLIRE----KKPKLFE 200
D AT L + PK F+
Sbjct: 151 FDALATAKLYQTLSHYFEPDNPKTFK 176
>gi|261750330|ref|ZP_05994039.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
gi|261740083|gb|EEY28009.1| DNA polymerase III [Brucella suis bv. 5 str. 513]
Length = 233
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 26 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 81
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 82 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 138
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 139 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 174
Query: 181 VYATLAL 187
Y T L
Sbjct: 175 AYLTAGL 181
>gi|229047208|ref|NP_935870.2| oligoribonuclease [Vibrio vulnificus YJ016]
gi|229220645|ref|NP_760214.2| oligoribonuclease [Vibrio vulnificus CMCP6]
gi|320155081|ref|YP_004187460.1| 3'-to-5' oligoribonuclease [Vibrio vulnificus MO6-24/O]
gi|29611786|sp|Q8DCV6|ORN_VIBVU RecName: Full=Oligoribonuclease
gi|41017432|sp|Q7MGZ7|ORN_VIBVY RecName: Full=Oligoribonuclease
gi|319930393|gb|ADV85257.1| 3'-to-5' oligoribonuclease (orn) [Vibrio vulnificus MO6-24/O]
gi|319999184|gb|AAO09741.2| Oligoribonuclease [Vibrio vulnificus CMCP6]
Length = 181
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + + + A + D + +
Sbjct: 6 QNLIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAE 42
>gi|261323134|ref|ZP_05962331.1| DNA polymerase III [Brucella neotomae 5K33]
gi|261299114|gb|EEY02611.1| DNA polymerase III [Brucella neotomae 5K33]
Length = 233
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 26 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 81
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D + +
Sbjct: 82 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPFYCT 138
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 139 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 174
Query: 181 VYATLAL 187
Y T L
Sbjct: 175 AYLTAGL 181
>gi|254516802|ref|ZP_05128860.1| oligoribonuclease [gamma proteobacterium NOR5-3]
gi|219674307|gb|EED30675.1| oligoribonuclease [gamma proteobacterium NOR5-3]
Length = 184
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G DR + A + D +
Sbjct: 5 QNLVWVDLEMTGLVPETDRVIEIATIVTDSDLNTLAE 41
>gi|115396528|ref|XP_001213903.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193472|gb|EAU35172.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 186
Score = 44.0 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPA 48
++ V D E G D D+ Q D Q ++ EV +PA
Sbjct: 7 SDPLVWIDCEMTGLDPETDQILQICCFVTDAQMNLLDETGFEVIIHQPA 55
>gi|306845957|ref|ZP_07478524.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
gi|306273592|gb|EFM55437.1| DNA polymerase III, epsilon chain [Brucella sp. BO1]
Length = 235
Score = 44.0 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 59/187 (31%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A I G
Sbjct: 17 IVFDTETTGILP-YDRIITLGAVKIEGD-ELLTQSLYLIFDPRKD--SSPQAEAIHGFDN 72
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 73 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDIHYIQREFRKAEVDMLDQPVYCT 129
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
+ W D S KL LA H A D
Sbjct: 130 MEGARRLW------------RGD------------SAKLDHCLAKIGLARTGYRHGALED 165
Query: 181 VYATLAL 187
Y T L
Sbjct: 166 AYLTAGL 172
>gi|167619167|ref|ZP_02387798.1| oligoribonuclease [Burkholderia thailandensis Bt4]
Length = 201
Score = 44.0 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 60/210 (28%), Gaps = 58/210 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + + V +D+ L A
Sbjct: 19 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL----AKMDDWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EA+ + +I F P + N+I D
Sbjct: 75 KNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWMPE 134
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREK 194
G + H A AD++ ++ + RE+
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRER 189
>gi|225629116|ref|ZP_03787149.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Brucella ceti str. Cudo]
gi|237817070|ref|ZP_04596062.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
abortus str. 2308 A]
gi|225615612|gb|EEH12661.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Brucella ceti str. Cudo]
gi|237787883|gb|EEP62099.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
abortus str. 2308 A]
Length = 248
Score = 44.0 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 41 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 96
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 97 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 153
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 154 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 189
Query: 181 VYATLAL 187
Y T L
Sbjct: 190 AYLTAGL 196
>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
Length = 1457
Score = 44.0 bits (103), Expect = 0.049, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA---DDYLPDPEAVFIT 61
+V++D ET G + +F V +I F KP Y+ D +T
Sbjct: 404 YVVFDLETTGLSPKFNELIEFGAVVWQNG--QILEKHEFLIKPKEKIPSYISD-----LT 456
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
GIT Q + + E + +I Q F N+ ++ +N RFD
Sbjct: 457 GITNQMIENEAISVEEAAIKIKQIFQ--NSILVAHNA-RFD 494
>gi|300727971|ref|ZP_07061349.1| exonuclease [Prevotella bryantii B14]
gi|299774813|gb|EFI71427.1| exonuclease [Prevotella bryantii B14]
Length = 279
Score = 44.0 bits (103), Expect = 0.049, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVF 59
+T +I+D ET G D+ DR Q + ++V E+ V KP ++ D
Sbjct: 5 LTKPLIIFDLETTGLDMVNDRIIQISYIKVMPNGEEKRGDELVNPEKPIPAFVSD----- 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT ++ ++ E ++ F G+N+ RFD F R D
Sbjct: 60 LTGITNEQV-KNAPTFKEIGTKLADIF--KGCDFAGFNSNRFDIPLLCEEFLRAGID 113
>gi|170738412|ref|YP_001767067.1| DNA polymerase III subunit epsilon [Methylobacterium sp. 4-46]
gi|168192686|gb|ACA14633.1| Exonuclease RNase T and DNA polymerase III [Methylobacterium sp.
4-46]
Length = 223
Score = 44.0 bits (103), Expect = 0.049, Method: Composition-based stats.
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D A +R+ +I ++E D PEA+ + + +
Sbjct: 35 DCETTGLDPRRDEIVAVAAIRIRGD--RILTSESLRATVRSDRPSSPEAIKVHRLLNAEI 92
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNN---IRFDDYYSRNIFYRNFYDSYRWSWDNG 125
++A + P I+GY +R D R F
Sbjct: 93 REAEPLDAVLPALLRFIGGRP---IVGYYTEFDVRMLDKSVRRQF--GIRLP-------- 139
Query: 126 NSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADVY 182
N R D+ + A Y +PD ++ SF L+DL G+ + HDA D
Sbjct: 140 NPRIDVSSLYHAAKYRDAPDYVKIDL------SFARILEDL----GLPALPQHDAFNDAL 189
Query: 183 AT 184
T
Sbjct: 190 MT 191
>gi|325087498|gb|EGC40808.1| oligoribonuclease [Ajellomyces capsulatus H88]
Length = 189
Score = 44.0 bits (103), Expect = 0.050, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
T V D E G + D+ Q D + F + PE+V
Sbjct: 7 TAPLVWIDCEMTGLNPRTDKILQICCFITDADLNLL-EPTGFEA-----VIHHPESVL 58
>gi|154271267|ref|XP_001536487.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409710|gb|EDN05154.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 189
Score = 44.0 bits (103), Expect = 0.051, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
T V D E G + D+ Q D + F + PE+V
Sbjct: 7 TAPLVWIDCEMTGLNPRTDKILQICCFITDADLNLL-EPTGFEA-----VIHHPESVL 58
>gi|300716497|ref|YP_003741300.1| ribonuclease T [Erwinia billingiae Eb661]
gi|299062333|emb|CAX59450.1| Ribonuclease T [Erwinia billingiae Eb661]
Length = 215
Score = 44.0 bits (103), Expect = 0.051, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G D + + A V + + + T F +P + + PEA+ GI P
Sbjct: 23 DVETAGFDAKTNALLEIAAVTLKMDENGWLEKDETLHFHVEPFEGSILQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N I+ +N FD ++ R RN
Sbjct: 83 SNPLRGAVSEYDALHAIFKLVRKGIKDHGCNRAIMVAHNATFDLNFTNAAADRAGLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFVT 148
>gi|288940627|ref|YP_003442867.1| Exonuclease RNase T and DNA polymerase III [Allochromatium
vinosum DSM 180]
gi|288895999|gb|ADC61835.1| Exonuclease RNase T and DNA polymerase III [Allochromatium
vinosum DSM 180]
Length = 187
Score = 44.0 bits (103), Expect = 0.051, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G D DR + A + D Q +
Sbjct: 11 HNLIWIDLEMTGLDPDHDRILEIATLITDSQLRVLAE 47
>gi|72162668|ref|YP_290325.1| oligoribonuclease [Thermobifida fusca YX]
gi|71916400|gb|AAZ56302.1| exonuclease [Thermobifida fusca YX]
Length = 213
Score = 44.0 bits (103), Expect = 0.051, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 20/83 (24%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M + V D E G D+ D + A + D + +++ KP
Sbjct: 1 MNDSLVWIDCEMTGLDLKKDALIEVACLITDGELNQLDEGINVVIKP------------- 47
Query: 61 TGITPQKALRDGVVEAEFSRRIH 83
PQ+AL EF ++H
Sbjct: 48 ----PQEALDQ---MGEFVTQMH 63
>gi|54310437|ref|YP_131457.1| oligoribonuclease [Photobacterium profundum SS9]
gi|59798036|sp|Q6LM23|ORN_PHOPR RecName: Full=Oligoribonuclease
gi|46914878|emb|CAG21655.1| putative oligoribonuclease [Photobacterium profundum SS9]
Length = 181
Score = 44.0 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 48/205 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--------FCKPADDYLPD 54
+ + D E G D + + + A + D Q + V K D
Sbjct: 6 QNLIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWC--- 62
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRN 108
++ + E + R+ F C N+I D R
Sbjct: 63 -TNTHTNSGLVERIRQSKFTEEDAIRQTIAFLEQWVPKGASPICG---NSIGQD----RR 114
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
Y++ + + D+ + + P+ ++ G
Sbjct: 115 FLYKHM--PELEQYFHY-RYLDVSTIKELTRRWQPELLE--------------------G 151
Query: 169 IEHVNAHDAKADVYATLALVWLIRE 193
+H A D++ ++A + RE
Sbjct: 152 FSKKGSHLALDDIHDSIAELRYYRE 176
>gi|328873520|gb|EGG21887.1| nucleotide binding protein 1-like protein [Dictyostelium
fasciculatum]
Length = 879
Score = 44.0 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
N + D E G D+ DR + A + D + IE
Sbjct: 102 NRLIWVDLEMTGLDITKDRIMEIACIVTDDNLQVIE 137
>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
lactis subsp. lactis CV56]
Length = 1638
Score = 44.0 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 66/208 (31%), Gaps = 37/208 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V++D ET G + Q A ++ + I+ + F Y +TG
Sbjct: 594 STYVVFDVETTGLSAVHNDLIQIAATKMHKG-NPIDEFDEF---INPGYRLSEFTTELTG 649
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT ++ E + Q F T ++ +N FD + + RN
Sbjct: 650 ITDDHV-KNAKPLYEVLTK-FQKFC-EGTILVAHNA-TFDVGFMNMNYSRNGL-PIITQ- 703
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D + P+ F L L I H A D
Sbjct: 704 -------PVVDTLEFARNLYPE----------MKRFGLGQLTKKFQIGLEYHHMANFDAE 746
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQ 210
AT L LF +L + R +N
Sbjct: 747 ATGRL----------LFVFLEELRTRNT 764
>gi|227503970|ref|ZP_03934019.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
gi|227199438|gb|EEI79486.1| oligoribonuclease [Corynebacterium striatum ATCC 6940]
Length = 210
Score = 44.0 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D + A + D I
Sbjct: 8 NDRLVWIDLEMTGLDPKRHVIVEVAAIITDGNLNVIGE 45
>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type
[Mycoplasma gallisepticum str. R(low)]
gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type
[Mycoplasma gallisepticum str. R(low)]
gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type
[Mycoplasma gallisepticum str. R(high)]
Length = 1494
Score = 44.0 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 49/236 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---------IESTEVFFCKPADDYLPD 54
FVI+D ET G + ++ + A VRV + I E
Sbjct: 409 SFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEFVQIGKFEKLIKNKK------ 462
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQF---FSVPNTCIIGYNNIRFDDYYSRNIFY 111
P + F T +T + +A+ + + + F + ++ +N I FD +
Sbjct: 463 PLSKFTTQLT--GLKDSDLKDAQDEKTVLEEFVNFIQKDDVLVAHNGIDFDFIWINTKLD 520
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ N D L + +Y F + L++L+L G E+
Sbjct: 521 KYKLKPL------DNPMLDSLRLAYQLYQFKR--------------YTLENLSLKLGYEY 560
Query: 172 VN--AHDAKADVYATLALVW----LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
AH A D L ++ + K + L D ++ +L + +++
Sbjct: 561 DKTLAHRANYDTEL---LAKCLMIMLSQVYAKNWRSLLDLNDQEKLLNDLSEKSLK 613
>gi|257138397|ref|ZP_05586659.1| oligoribonuclease [Burkholderia thailandensis E264]
Length = 201
Score = 44.0 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 60/210 (28%), Gaps = 58/210 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + + V +D+ L A
Sbjct: 19 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL----AKMDDWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EA+ + +I F P + N+I D
Sbjct: 75 KNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWMPE 134
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREK 194
G + H A AD++ ++ + RE+
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRER 189
>gi|283457705|ref|YP_003362291.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa DY-18]
gi|283133706|dbj|BAI64471.1| DNA polymerase III, epsilon subunit [Rothia mucilaginosa DY-18]
Length = 231
Score = 44.0 bits (103), Expect = 0.053, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 63/200 (31%), Gaps = 34/200 (17%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV R + + +D Q + E A + GIT +
Sbjct: 11 FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLA---DPGVEIPAGAAAVHGITTEY 67
Query: 68 ALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFD-----DYYSRNIFYRNFYDSY 118
A G E + I ++ II +N +D R+
Sbjct: 68 AREHGRPAREVVWELAGAIGA-LNLDGVPIIAFNA-AYDFSVLHHEMLRHNIANGELPP- 124
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
V+ Y I R G + L+ LA G+ NAH +
Sbjct: 125 --------------GVVLDPYVLHKHVIP---RKRGKRT--LEVLAAEYGVSLENAHTSA 165
Query: 179 ADVYATLALVWLIREKKPKL 198
D A L+ + E+ P++
Sbjct: 166 DDALAAERLLVKLTEQFPEV 185
>gi|218134802|ref|ZP_03463606.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
43243]
gi|217990187|gb|EEC56198.1| hypothetical protein BACPEC_02705 [Bacteroides pectinophilus ATCC
43243]
Length = 237
Score = 44.0 bits (103), Expect = 0.053, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 39/247 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCK-PADDYLPDPEAVF 59
M + +V D ET G + A DR + +V + F P
Sbjct: 1 MIDTYVAIDLETTGTNPAEDRIIEVGAAKV-----ECGRVVSIFSTFVNPQISISPRITS 55
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGIT + V+ + I VP I+G+N I FD F + + +
Sbjct: 56 LTGITDEDVAGAPVIADIIADMIAYTKDVP---ILGHNVI-FD-----YSFIKKAAANSK 106
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ + +D ++ PD L L I+ +H A
Sbjct: 107 LEYAK-----EGIDTLKIARRILPDV----------PHKNLPALCEHFKIDPGKSHRALD 151
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMF---GASRSN 236
D + L + + P+ + NK + ++ +P+ + A N
Sbjct: 152 DAISASKLYYALYAVNPE-----DEMFNKAMVLNY-SVKKDSPITPAQKKYLTALAQYHN 205
Query: 237 TALIAPV 243
A+ P+
Sbjct: 206 VAVTVPI 212
>gi|209696189|ref|YP_002264119.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
gi|208010142|emb|CAQ80467.1| oligoribonuclease [Aliivibrio salmonicida LFI1238]
Length = 181
Score = 44.0 bits (103), Expect = 0.053, Method: Composition-based stats.
Identities = 30/208 (14%), Positives = 54/208 (25%), Gaps = 54/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--------FCKPADDYLPD 54
+ + D E G D + + A + D Q + V K D
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQSEGELAKMDDW---- 61
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFS---------VPNTCIIGYNNIRFDDYY 105
T R E + I + + V C N+I D
Sbjct: 62 ---CTNTHTNSGLVARVNASEHTEASAIEETIAFLEKWVPKGVSPICG---NSIGQD--- 112
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
R Y++ + + D+ + + P+ +
Sbjct: 113 -RRFLYKHM--PKLEEYFHY-RYVDVSTIKELTRRWKPEVLD------------------ 150
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIRE 193
G E H A D+ ++A + R+
Sbjct: 151 --GFEKTGTHLALDDIRESIAELKYYRK 176
>gi|163856231|ref|YP_001630529.1| oligoribonuclease [Bordetella petrii DSM 12804]
gi|163259959|emb|CAP42260.1| oligoribonuclease [Bordetella petrii]
Length = 181
Score = 44.0 bits (103), Expect = 0.053, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 60/208 (28%), Gaps = 54/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N V D E G D +R + A V + + V + P+++
Sbjct: 6 NRLVWLDMEMTGLDPTKERIIEVAVVVTEPDLTVVAEGPVL-------VVHQPDSLLDAM 58
Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105
G + K + EA+ R + +F + C N I D
Sbjct: 59 DNWNKSTHGKSGLIDKVRASTLTEAQAERMLLEFLAQHVPAGKSPLCG---NTISQD--- 112
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
F + + N D+ + + P +
Sbjct: 113 --RRFMYAYMPELERFFHYRN--LDVSTLKELARRWVPAVYK------------------ 150
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIRE 193
G E + H+A AD+Y ++ + RE
Sbjct: 151 --GFEKKSKHEALADIYESIDELKYYRE 176
>gi|163732758|ref|ZP_02140203.1| exonuclease, putative [Roseobacter litoralis Och 149]
gi|161394118|gb|EDQ18442.1| exonuclease, putative [Roseobacter litoralis Och 149]
Length = 465
Score = 44.0 bits (103), Expect = 0.053, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D ET G D D Q VRV + I EVF P + + I
Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRV-VNGKII-EGEVFDTLVNPGRTIPPGSTAVHQI 329
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
A+ + + R F+ + I+ +N FD + R
Sbjct: 330 N--DAMVADAPGFDVACRAFHQFA-EHAVIVAHNA-PFDMAFLRRQC 372
>gi|114798147|ref|YP_758739.1| DNA polymerase III subunit epsilon [Hyphomonas neptunium ATCC
15444]
gi|114738321|gb|ABI76446.1| DNA polymerase III, epsilon subunit [Hyphomonas neptunium ATCC
15444]
Length = 232
Score = 44.0 bits (103), Expect = 0.053, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 32/110 (29%), Gaps = 6/110 (5%)
Query: 8 YDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
+D ET G + DR + V I + + F + ITGIT
Sbjct: 10 FDTETTGLNPNEGDRIIEIGAV---EMINHIPTGKTFRRLINPGMAVSEATIRITGITDD 66
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
E I F II +N FD + R D
Sbjct: 67 HLRDK--PPFEHPDIIDAFLEFTGDAIIVAHNASFDRGFLNMELQRCGRD 114
>gi|313206803|ref|YP_004045980.1| DNA polymerase iii, epsilon subunit [Riemerella anatipestifer DSM
15868]
gi|312446119|gb|ADQ82474.1| DNA polymerase III, epsilon subunit [Riemerella anatipestifer DSM
15868]
gi|315023876|gb|EFT36878.1| DNA polymerase III epsilon subunit [Riemerella anatipestifer RA-YM]
gi|325335757|gb|ADZ12031.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
[Riemerella anatipestifer RA-GD]
Length = 407
Score = 44.0 bits (103), Expect = 0.054, Method: Composition-based stats.
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 42/193 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------ITG 62
D E+ G + + A R D + ++ +PEA +TG
Sbjct: 6 DIESNGGAFREECIIEVAIYRYDGH-KIVDQFISMV---------NPEADISHFVQKLTG 55
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR-NFYDSYRWS 121
ITP+ E ++RI + + ++G+N + FD R F R ++ S
Sbjct: 56 ITPKMVKTAPKFH-EIAKRIIEI--TEGSTLVGHN-VDFDYRMLRQSFKRLGYHFSIET- 110
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
LD + P ++ S+ L L + GI H A +D
Sbjct: 111 ----------LDTIPLAKKLIP-------NEE---SYSLGKLVKSLGIPLAEHHRASSDA 150
Query: 182 YATLALVWLIREK 194
ATL L L+ K
Sbjct: 151 RATLDLFKLLMTK 163
>gi|167563592|ref|ZP_02356508.1| oligoribonuclease [Burkholderia oklahomensis EO147]
gi|167570756|ref|ZP_02363630.1| oligoribonuclease [Burkholderia oklahomensis C6786]
Length = 201
Score = 44.0 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 60/209 (28%), Gaps = 58/209 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + + VF +D+ L A
Sbjct: 19 NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETL----AKMDDWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EA+ + +I F P + N+I D
Sbjct: 75 KNTHGRSGLIDRVRASTVTEADAAAQIEAFLGQHVPPGKSPMCGNSICQDRRFMARWMPE 134
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIRE 193
G + H A AD++ ++ + RE
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRE 188
>gi|33865550|ref|NP_897109.1| DNA polymerase III, epsilon subunit [Synechococcus sp. WH 8102]
gi|33632719|emb|CAE07531.1| possible DNA polymerase III, epsilon subunit [Synechococcus sp. WH
8102]
Length = 256
Score = 44.0 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 37/182 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+I D ET G D DR + + D + + + F +
Sbjct: 26 TLLIIDTETTGLDPEKDRCLEVGAILFDVSTRSVLAQQSF-------------------L 66
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIR-FDDYYSRNIFYRNFYDSYRWS 121
P + AE RI + P +R FD+ + + +
Sbjct: 67 LPVETNA-----AEPINRIPASVTRLPQPWT---GALRWFDELLTASDVLVAHNAVFDRQ 118
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD--GATSFKLQDLALANGIEHVNAHDAKA 179
W D L + + S + ++WP+ S + DLALA G+ +AH A
Sbjct: 119 WFGR----DPLPAVSHPWLCSMEDLRWPAERQLRSRPSVR--DLALAYGVPVWSAHRALT 172
Query: 180 DV 181
D
Sbjct: 173 DC 174
>gi|262401567|ref|ZP_06078134.1| oligoribonuclease [Vibrio sp. RC586]
gi|262352282|gb|EEZ01411.1| oligoribonuclease [Vibrio sp. RC586]
Length = 181
Score = 44.0 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 17/122 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P + E T
Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ V E + + F C N+I D R Y+
Sbjct: 66 HTASGLVARVRASQVSEEQAIDQTLAFLKQWVPERKSPICG---NSIGQD----RRFLYK 118
Query: 113 NF 114
+
Sbjct: 119 HM 120
>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus warneri L37603]
gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus warneri L37603]
Length = 1438
Score = 44.0 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHEKLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----DVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G++ H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTDYGKHG-----LNFLAKKYGVDLTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|254448875|ref|ZP_05062331.1| oligoribonuclease [gamma proteobacterium HTCC5015]
gi|198261565|gb|EDY85854.1| oligoribonuclease [gamma proteobacterium HTCC5015]
Length = 185
Score = 44.0 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
++ + D E G D D + A + D+ I + + P+AV
Sbjct: 10 DNLIWIDLEMTGLDTVNDEIIEIATIVTDKALNVIAEGPML-------AIHQPDAVM 59
>gi|50086122|ref|YP_047632.1| oligoribonuclease [Acinetobacter sp. ADP1]
gi|59798028|sp|Q6F805|ORN_ACIAD RecName: Full=Oligoribonuclease
gi|49532098|emb|CAG69810.1| oligoribonuclease [Acinetobacter sp. ADP1]
Length = 183
Score = 44.0 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V D L
Sbjct: 1 MSSTQDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNIVAEGPVLAVHQPDRIL 56
>gi|167762354|ref|ZP_02434481.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
43183]
gi|167699997|gb|EDS16576.1| hypothetical protein BACSTE_00708 [Bacteroides stercoris ATCC
43183]
Length = 256
Score = 44.0 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 42/207 (20%), Positives = 76/207 (36%), Gaps = 45/207 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVF 59
+ N V +D ET G ++ DR + ++V + E + + +P+ EA
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPE-EASA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GI + V E + + + + + + G+N+ RFD F R D
Sbjct: 60 VHGI-----YDEDVAECPTFKEVARNIANDIEGCDLAGFNSNRFDIPVLAEEFLRADVDI 114
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEH 171
SR +DV + K++ L+ A G
Sbjct: 115 -------DMSRRKFVDVQVIFH-------------------KMEQRTLSAAYKFYCGKNL 148
Query: 172 VNAHDAKADVYATLALVWLIREKKPKL 198
+AH A+AD AT ++ ++ P+L
Sbjct: 149 EDAHTAEADTRATYEVLMSQLDRYPEL 175
>gi|62263510|gb|AAX78167.1| unknown protein [synthetic construct]
Length = 213
Score = 44.0 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ + D E G DV + + A + D+ I E D+ L
Sbjct: 30 ADNLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVL 80
>gi|298208469|ref|YP_003716648.1| probable DNA-directed DNA polymerase III (epsilon subunit)
[Croceibacter atlanticus HTCC2559]
gi|83848392|gb|EAP86261.1| probable DNA-directed DNA polymerase III (epsilon subunit)
[Croceibacter atlanticus HTCC2559]
Length = 457
Score = 44.0 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 28/190 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G + + A + D E ++ + P V +TGI
Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGH-EVVDQVISL---VNPERPIQPFVVGLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
LR+ E ++RI + CI+ +N +FD R F R Y + +
Sbjct: 58 NDM-LRNAPKFYEIAKRILEITQD---CILVAHNAKFDYRILRTEFRRLG---YEYERET 110
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
S + P G S+ L L A GI + H A D AT
Sbjct: 111 LCS-------VELSKKLLP----------GHASYSLGKLTKALGIPISSRHRADGDAIAT 153
Query: 185 LALVWLIREK 194
+ L L+ +K
Sbjct: 154 VKLFKLLLQK 163
>gi|297249562|ref|ZP_06933263.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
B3196]
gi|297173431|gb|EFH32795.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 5 str.
B3196]
gi|326554073|gb|ADZ88712.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
Length = 235
Score = 44.0 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 28 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 83
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 84 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 140
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 141 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 176
Query: 181 VYATLAL 187
Y T L
Sbjct: 177 AYLTAGL 183
>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
Length = 244
Score = 44.0 bits (103), Expect = 0.057, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + + P D DP A+ + G+T +
Sbjct: 7 DTETTGLNPRSGDRLIEIGCVEL-LNRRLTGNNLHIYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
AE + +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVADQIRDFVKGAELII---HNAPFDLGFLDAEFARLGLPPF 110
>gi|255531786|ref|YP_003092158.1| exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
DSM 2366]
gi|255344770|gb|ACU04096.1| Exonuclease RNase T and DNA polymerase III [Pedobacter heparinus
DSM 2366]
Length = 328
Score = 44.0 bits (103), Expect = 0.057, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
+D ET G +V DR + A ++ S + + + +P P A I GI
Sbjct: 9 LAFFDLETTGVNVGADRIVEIAILKAMPD----GSELIKTMRINPE-MPIPLYASLIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCII------GYNNIRFDDYYSRNIFYRNFYD 116
E + I + + I GYN+ RFD F R D
Sbjct: 64 ---------YDEHIANEPIFKEVATELADFIGDADLAGYNSNRFDIPVLLEEFLRAGVD 113
>gi|225556491|gb|EEH04779.1| oligoribonuclease [Ajellomyces capsulatus G186AR]
Length = 189
Score = 44.0 bits (103), Expect = 0.057, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
T V D E G + D+ Q D + F + PE+V
Sbjct: 7 TAPLVWIDCEMTGLNPRTDKILQICCFITDADLNLL-EPTGFEA-----VIHHPESVL 58
>gi|183599959|ref|ZP_02961452.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
gi|188022234|gb|EDU60274.1| hypothetical protein PROSTU_03480 [Providencia stuartii ATCC 25827]
Length = 234
Score = 44.0 bits (103), Expect = 0.057, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 34/184 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGITPQK 67
D ET G D DR G+ + + + + +D P E I ITP++
Sbjct: 56 DLETTGLDPEKDRILSI-GMVTIADSKILLKSAQHY--YVNDNEPVKAETAVINHITPEQ 112
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWSWD 123
L DGV CI+ + + + F + W
Sbjct: 113 -LSDGVSLPHAIASFLHE--AKGKCILAHGSA------IEHAFLSKALNIKELPLLW--- 160
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D L++ + S I F L L + +AH+A +D A
Sbjct: 161 -----FDTLNIEKT--LLSHKNIN-------RNDFSLSALRSRYQLPDYDAHNALSDAIA 206
Query: 184 TLAL 187
T L
Sbjct: 207 TAEL 210
>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
Length = 1367
Score = 44.0 bits (103), Expect = 0.058, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 74/230 (32%), Gaps = 50/230 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D+ET G D +D + V++ + ++ KP+ + ++ ITGI
Sbjct: 357 TFVVLDFETTGLDPQVDEIIEIGAVKIQGG-QIVDEYHTLI-KPSREI--SRKSSEITGI 412
Query: 64 TPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T + +E EF + + I+ +N FD + R +
Sbjct: 413 TQEMLENKRSIEEVLPEFLGFLED------SIIVAHNA-NFDYRFLR--LW--IKKVMGL 461
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W+ D L + +++ S+ L + G+ H A D
Sbjct: 462 DWERP--YIDTLALAKSLLKLR--------------SYSLDSVVEKLGLGPFRHHRALDD 505
Query: 181 VYAT-------LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
T + ++ I +L+ ID + P
Sbjct: 506 ARVTAQVFLRFVEMMKKIGIT---------KLSEMEKLKDTIDYTALKPF 546
>gi|194333813|ref|YP_002015673.1| DNA polymerase III subunit epsilon [Prosthecochloris aestuarii DSM
271]
gi|194311631|gb|ACF46026.1| DNA polymerase III, epsilon subunit [Prosthecochloris aestuarii DSM
271]
Length = 208
Score = 44.0 bits (103), Expect = 0.058, Method: Composition-based stats.
Identities = 47/211 (22%), Positives = 72/211 (34%), Gaps = 44/211 (20%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
+ + V+ D+ET G DR + V V+ ++ + +
Sbjct: 6 LADSVVVLDFETTGLSPQYGDRAIEIGAVLVEEG-RIVDRFQKL---MNPGFRISSFIEA 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN----NIRFDDYYSRNIFYRNFY 115
TGIT + + E + FS I G+N N FD + R
Sbjct: 62 YTGITNEMLKGEACCE-----EVMAQFSE---FIAGHNIVAHNASFDKRFLDFELKRA-- 111
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174
S++ L V R IY SP+ KLQ L G+ +
Sbjct: 112 ---NRSYEGVCCCS--LLVSRRIYQDSPNH-------------KLQTLVSHAGVPTIGSF 153
Query: 175 HDAKADVYAT----LALVWLIREKK--PKLF 199
H A AD T LA++ IR++ P +F
Sbjct: 154 HRALADAEMTAHLWLAMIDRIRKQYGIPTVF 184
>gi|312795413|ref|YP_004028335.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
gi|312167188|emb|CBW74191.1| Exonuclease family protein [Burkholderia rhizoxinica HKI 454]
Length = 281
Score = 44.0 bits (103), Expect = 0.058, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 43/200 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFI 60
D ET G LDR + + VDR W + +P P +
Sbjct: 45 LAFVDLETTGGRPGLDRITEVGVIEVDRDGVRRWSTLVDPL----QPIP-----PFVQQL 95
Query: 61 TGITPQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF--YDS 117
TGIT A+ G + + + + I +N RFD + + F + +D
Sbjct: 96 TGIT--DAMVRGAPTFDALAAELARRLD--GKLFIAHNA-RFDHGFLKKAFEQIGIRFDP 150
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
D+L +R A P G L LA + H A
Sbjct: 151 ------------DVLCTVRLSRALFPR-----ESRHG-----LDALAQRLDLSACGRHRA 188
Query: 178 KADVYATLALVWLIREKKPK 197
AD + P+
Sbjct: 189 LADADLVWQFWQRVHALHPR 208
>gi|317492115|ref|ZP_07950545.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919820|gb|EFV41149.1| ribonuclease T [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 218
Score = 44.0 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVR---VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G D + + A V D W + + T F +P + PEA+ GI P
Sbjct: 23 DVETAGFDANTNALLEIAAVTLRMTDDGWLEPDETLHFHVEPFVGSVLVPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
+ LR V E E I + N +I +N FD + R RN
Sbjct: 83 ENPLRGAVSEYEALHAIFKAVRKGIKEHDCNRAVIVAHNAHFDHSFVMAAAERVGLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|167554101|ref|ZP_02347842.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
SARA29]
gi|205321613|gb|EDZ09452.1| YacC [Salmonella enterica subsp. enterica serovar Saintpaul str.
SARA29]
Length = 287
Score = 44.0 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 24/179 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V D ET G D A + + V +F + DP A + GI+
Sbjct: 106 VFLDTETTGLD-AGAQALEIGLV------NARGE-RIFETRLKPTVAIDPAAAAVHGIS- 156
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ L + ++++ I N FD + + ++
Sbjct: 157 DEDLVRAPSWPDIAQQLQHHIGRRPLVIF---NAEFDTRILKQT---------AAAHNDP 204
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
S D L V A++ + G P+ G S ++ A AH A D T
Sbjct: 205 ASWLDSLTVYCAMWLAA--GYYGPTNRYGTISLS-GAVSQAGLSWIGEAHSAVTDAVMT 260
>gi|239944923|ref|ZP_04696860.1| DNA polymerase III [Streptomyces roseosporus NRRL 15998]
gi|239991387|ref|ZP_04712051.1| DNA polymerase III [Streptomyces roseosporus NRRL 11379]
gi|291448385|ref|ZP_06587775.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351332|gb|EFE78236.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 641
Score = 44.0 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 30/182 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A + + E+ DP V + G+T ++
Sbjct: 24 DVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTL---LDPGC--DPGPVEVHGLTAERL 78
Query: 69 LRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
G + + RI ++ +N +FD + + F R W
Sbjct: 79 --RGAPTFDQVAGRIGAMLQDR---VLVAHNAQFDYDFLAHEFAR------ARMW----- 122
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
L V + + + + P DD KL LA + AHDA D +
Sbjct: 123 ----LPVSQRLCTLALNRQVDPPTDD----MKLGTLATHYDVPQQRAHDALDDTRVLAGI 174
Query: 188 VW 189
+
Sbjct: 175 LR 176
>gi|315648491|ref|ZP_07901590.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
gi|315276185|gb|EFU39531.1| hypothetical protein PVOR_24689 [Paenibacillus vortex V453]
Length = 246
Score = 43.6 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 27/194 (13%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D ET G + D F VRV + + IE + +P P +TGIT
Sbjct: 62 VVFDLETTGFNHQHGDEILSFGAVRVIGE-QVIEQESFHMIVNSGSPVP-PFITELTGIT 119
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + D +H F + ++ + D R F ++ W
Sbjct: 120 --QHMVDAAPP--LMEGLHDFMAFVGGRVLVAHAAAHD---------RGFLNAALWKTSK 166
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
LLD M P+ T + L +L I H A +D T
Sbjct: 167 VRLTHRLLDTMMLAQRLYPE----------QTDYSLDELLRNCSIPVEGRHHALSDARMT 216
Query: 185 LAL-VWLIREKKPK 197
L I+E + +
Sbjct: 217 ARLWADYIKEIQAR 230
>gi|115534831|ref|YP_783913.1| hypothetical protein pRE25p29 [Enterococcus faecalis]
gi|662264|gb|AAA99471.1| ORF6 [Plasmid pIP501]
gi|12957014|emb|CAC29184.1| hypothetical protein [Enterococcus faecalis]
Length = 450
Score = 43.6 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLP 397
+ + +YN+P + +D + Y F+ +R + +L L+ N+ D R
Sbjct: 55 KLEIVYNRPNGYTPL-LDLKEYADFYKLDIVNRLLEMNVLEKTNTYLAMQNILLKDTR-- 111
Query: 398 ELFFRYRARNF---PHTLSEKEKQDWLEHRKKMLTRSRIEEYK-NKLQSLSGEYK---GD 450
+L F Y+A +F P++ +++E + W + +E+Y+ N+++ L+ E D
Sbjct: 112 DLLFIYKADHFDNLPYS-TKEELEQWKNFICSFFGKFTLEKYEKNRIEVLTKEKNSFLND 170
Query: 451 EGKEGLINALYE 462
+ +L +
Sbjct: 171 VEAVESLESLRD 182
>gi|28572517|ref|NP_789297.1| oligoribonuclease [Tropheryma whipplei TW08/27]
gi|81839179|sp|Q83HW9|ORN_TROW8 RecName: Full=Oligoribonuclease
gi|28410649|emb|CAD67035.1| oligoribonuclease [Tropheryma whipplei TW08/27]
Length = 184
Score = 43.6 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+H V D E G + D + A + D+ ++ P+ + L
Sbjct: 7 PSHLVWVDCEMTGLNPERDELLEVAVIVTDKDLLPLDEGVNVVVSPSSEAL 57
>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
Length = 1490
Score = 43.6 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 31/216 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V++D ET G D+ + V++ ++ F P +T IT
Sbjct: 460 VVFDIETTGLSPTEDKIIEIGAVKM-LDGVVVDKFSEF---VDPKIPISPATTKLTTITD 515
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ G + F + ++G+N + FD + R
Sbjct: 516 DMVI--GAPLIDAVVPKFVEFCG-DCVLVGHN-VGFDISFIIENCRRLGI-------KKE 564
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
+ D + + RA Y P + S L+ + + + H A +D T
Sbjct: 565 FTCIDTMGLSRAFY---------PQQA--KHS--LEAVCKTLKVVNEQHHRAISDAECTA 611
Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMT 221
+ + +E KL+E + + + +DI+ +
Sbjct: 612 EIFKIFQE---KLYEKGIYDLDAIKAIEELDIEAVK 644
>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum NCTC 2916]
gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
botulinum NCTC 2916]
Length = 1432
Score = 43.6 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 40/188 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ FV++D ET G D+ + V++++ + ++ F +P+
Sbjct: 416 DTFVVFDLETTGFSSKNDKIIEIGAVKIEKG-KIVDRFSEFV---------NPKRTIPDK 465
Query: 63 ITPQKALRDG-VVEAEFSRRIHQFFSVPNTCIIGYN-----NIRFDDYYSRNIFYRNFYD 116
IT ++ D V + E +I F IG + N FD +
Sbjct: 466 ITELTSITDNMVDDKETIDKILPRFID----FIGDSVVVAHNASFDVSFINKNC-----K 516
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ ++N ++D + P+ KL +A GI N H
Sbjct: 517 DLKIEFENS-----VMDTVTLSRFLFPEL----------KRHKLNVIAKHLGISLENHHR 561
Query: 177 AKADVYAT 184
A D AT
Sbjct: 562 AVDDAKAT 569
>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 1228
Score = 43.6 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 38/199 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
+ +V++D ET G + DR + VRV +I+ T F P P P + +T
Sbjct: 200 DSYVVFDIETTGFNSVNDRIIEIGAVRVVEG--EIKETFSEFVNPER---PIPYKITQLT 254
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
IT G +E I F + ++ +N FD + R R Y
Sbjct: 255 TITDDMVKDAGTIE-----EILPQFLKFCEGSVLVAHNA-GFDTGFIRENAKR-LNLPYD 307
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ ++D + G F L ++ I H A
Sbjct: 308 HT---------VVDTLGLARCL--------MGHLGK--FTLDNICKHLNIILETHHRAVD 348
Query: 180 DVYAT----LALVWLIREK 194
D AT + + +++EK
Sbjct: 349 DATATGKIFVEFISMLKEK 367
>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
formatexigens DSM 14469]
gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
formatexigens DSM 14469]
Length = 1530
Score = 43.6 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 47/201 (23%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
+ V++D ET G +R + V+V+ +I F P +P P + +T
Sbjct: 508 STCVVFDLETTGFSPTQNRIIEIGAVKVENG--EITDRFSTFVNPQ---VPIPFRIEQLT 562
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-----DYYSRNIFYRNFYD 116
I + +E + + +F ++ +N FD + R +R+F
Sbjct: 563 SINDNMVMDAPTIE----QVLPEFLDFVGDAVLAAHNASFDVSFIEENMRRLGLWRDFTY 618
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D + P FKL +A A ++ + H
Sbjct: 619 ---------------VDTVALARVLLPQL----------NRFKLDTVAKALHVQLQHHHR 653
Query: 177 AKADVYAT-------LALVWL 190
A D T + ++ L
Sbjct: 654 AVDDAECTAGIYLKFMEMLKL 674
>gi|17988995|ref|NP_541628.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
16M]
gi|260756615|ref|ZP_05868963.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
gi|260760045|ref|ZP_05872393.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
gi|260763284|ref|ZP_05875616.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
gi|260882432|ref|ZP_05894046.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
gi|261216075|ref|ZP_05930356.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
gi|261217238|ref|ZP_05931519.1| DNA polymerase III [Brucella ceti M13/05/1]
gi|261220458|ref|ZP_05934739.1| DNA polymerase III [Brucella ceti B1/94]
gi|261313312|ref|ZP_05952509.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
gi|261318701|ref|ZP_05957898.1| DNA polymerase III [Brucella pinnipedialis B2/94]
gi|261320109|ref|ZP_05959306.1| DNA polymerase III [Brucella ceti M644/93/1]
gi|265986499|ref|ZP_06099056.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
gi|265992959|ref|ZP_06105516.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
gi|265996191|ref|ZP_06108748.1| DNA polymerase III [Brucella ceti M490/95/1]
gi|17984832|gb|AAL53892.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
16M]
gi|260670363|gb|EEX57303.1| DNA polymerase III [Brucella abortus bv. 4 str. 292]
gi|260673705|gb|EEX60526.1| DNA polymerase III [Brucella abortus bv. 2 str. 86/8/59]
gi|260676723|gb|EEX63544.1| DNA polymerase III [Brucella abortus bv. 6 str. 870]
gi|260871960|gb|EEX79029.1| DNA polymerase III [Brucella abortus bv. 9 str. C68]
gi|260917682|gb|EEX84543.1| DNA polymerase III [Brucella abortus bv. 3 str. Tulya]
gi|260919042|gb|EEX85695.1| DNA polymerase III [Brucella ceti B1/94]
gi|260922327|gb|EEX88895.1| DNA polymerase III [Brucella ceti M13/05/1]
gi|261292799|gb|EEX96295.1| DNA polymerase III [Brucella ceti M644/93/1]
gi|261297924|gb|EEY01421.1| DNA polymerase III [Brucella pinnipedialis B2/94]
gi|261302338|gb|EEY05835.1| DNA polymerase III [Brucella pinnipedialis M163/99/10]
gi|262550488|gb|EEZ06649.1| DNA polymerase III [Brucella ceti M490/95/1]
gi|262763829|gb|EEZ09861.1| DNA polymerase III [Brucella melitensis bv. 3 str. Ether]
gi|264658696|gb|EEZ28957.1| DNA polymerase III [Brucella pinnipedialis M292/94/1]
Length = 233
Score = 43.6 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 26 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 81
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 82 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 138
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 139 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 174
Query: 181 VYATLAL 187
Y T L
Sbjct: 175 AYLTAGL 181
>gi|15602765|ref|NP_245837.1| oligoribonuclease [Pasteurella multocida subsp. multocida str.
Pm70]
gi|13431730|sp|P57885|ORN_PASMU RecName: Full=Oligoribonuclease
gi|12721214|gb|AAK02984.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 184
Score = 43.6 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D +R + A + D+ + V +D+ L
Sbjct: 6 QNLIWIDLEMTGLDPESERIIEIATIVTDKHLNILAEGPVLAIHQSDECL 55
>gi|323345727|ref|ZP_08085950.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
ATCC 33269]
gi|323093841|gb|EFZ36419.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella oralis
ATCC 33269]
Length = 284
Score = 43.6 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+T +++D ET G D+ D Q + ++V ++ E F P PE V
Sbjct: 5 LTKPLIVFDLETTGLDLVNDHIIQISYIKVYPDGKE--ERENIFVNPGISI---PEEVTL 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI +D E + + + F GYN+ FD F R D
Sbjct: 60 LTGIGNDDV-KDAPTFKEIASSLCEKF--KGCDFAGYNSNHFDIPMLAEEFLRAGID 113
>gi|302189797|ref|ZP_07266470.1| oligoribonuclease [Pseudomonas syringae pv. syringae 642]
Length = 178
Score = 43.6 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 34/176 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+ + D E G D D + A + D + + V +D+ L A
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL----AKMDEW 60
Query: 61 -------TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSR 107
+G+T Q+ V AE + +F + C N+I D R
Sbjct: 61 NTRQHGGSGLT-QRVRESTVSMAEAEAQTLEFIKLWVPERSSPICG---NSICQD----R 112
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
YR+ ++ + + D+ + +SP+ G+T L D+
Sbjct: 113 RFLYRHM--PALENYFHYRN-LDVSTLKELAARWSPEL----KFKKGSTHLALDDI 161
>gi|83720885|ref|YP_442207.1| oligoribonuclease [Burkholderia thailandensis E264]
gi|83654710|gb|ABC38773.1| oligoribonuclease [Burkholderia thailandensis E264]
Length = 229
Score = 43.6 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 60/210 (28%), Gaps = 58/210 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + + V +D+ L A
Sbjct: 47 NLVWLDMEMTGLNPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETL----AKMDDWN 102
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EA+ + +I F P + N+I D
Sbjct: 103 KNTHGRSGLIDRVRVSSVTEADAAAQIEAFLGQYVPPGKSPMCGNSICQDRRFMARWMPE 162
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 163 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 190
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIREK 194
G + H A AD++ ++ + RE+
Sbjct: 191 ---GFQKRAMHTALADIHESIDELKYYRER 217
>gi|326802467|ref|YP_004320286.1| exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
21]
gi|326553231|gb|ADZ81616.1| Exonuclease RNase T and DNA polymerase III [Sphingobacterium sp.
21]
Length = 238
Score = 43.6 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 58/197 (29%), Gaps = 33/197 (16%)
Query: 1 MTNHFVIYDYETFGRDVALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADD 50
M + + D ET G Q A + + +I+ E F+ DD
Sbjct: 1 MQEYLLFIDTETTGLPKKWTVGYSTKDNWPSAVQVAWIVFTKDGREIKR-ENFYVN-EDD 58
Query: 51 YLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
+ +A + I GV ++ ++G+ + D + F
Sbjct: 59 VVVSRQAQLVHRIKDSYLRTFGVPRCAVMEKLSSDLRQFKPLVVGH-FVALDFHVLGADF 117
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAI--YAFSPDGIQWPSRDDGATSFKLQDLALAN- 167
YR +N L M A Y P W +L +L
Sbjct: 118 YRCAM-------ENPLGDLRLFCTMLASSGYVKKP----WIKY------LRLNELYQELF 160
Query: 168 GIEHVNAHDAKADVYAT 184
E AH+A D AT
Sbjct: 161 EKELEKAHNALLDADAT 177
>gi|308177366|ref|YP_003916772.1| oligoribonuclease [Arthrobacter arilaitensis Re117]
gi|307744829|emb|CBT75801.1| putative oligoribonuclease [Arthrobacter arilaitensis Re117]
Length = 203
Score = 43.6 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 26/124 (20%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
M ++ V D E G D+ D + A + D + ++ K P+P A
Sbjct: 1 MASNSEKIVWIDCEMTGLDLVNDALIEVAVLITDSDLQIVDEGIQVVIK------PEPAA 54
Query: 58 V-----------FITGITPQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFD 102
+ ++G+ P+ L +G+ E R I + PN ++G N++ D
Sbjct: 55 LAQMDDFVRNMHMVSGLLPE--LENGIAMDEAQRLVIDYIKKHVPEPNKALLGGNSVGTD 112
Query: 103 DYYS 106
+
Sbjct: 113 KNFL 116
>gi|329937943|ref|ZP_08287425.1| oligoribonuclease [Streptomyces griseoaurantiacus M045]
gi|329302900|gb|EGG46789.1| oligoribonuclease [Streptomyces griseoaurantiacus M045]
Length = 200
Score = 43.6 bits (102), Expect = 0.064, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G ++ D + A + D + + +P D+ L
Sbjct: 1 MNDRMVWIDCEMTGLSLSSDALIEVAALVTDSELNVLGEGVDIVIRPPDEAL 52
>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040495|gb|ACT57291.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 43.6 bits (102), Expect = 0.064, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 16/119 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGV------RVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
+++D ET G D DR + V + +R + +VF C + PEA+
Sbjct: 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTF------QVFLC--PNGRKNSPEALK 61
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ GIT + + FS FF+ N I +N +FD + R D
Sbjct: 62 LHGITDEFLKDKPSFSSIFSEFW-DFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL 118
>gi|307945225|ref|ZP_07660561.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
sp. TrichSKD4]
gi|307771098|gb|EFO30323.1| DNA polymerase III epsilon subunit family exonuclease [Roseibium
sp. TrichSKD4]
Length = 470
Score = 43.6 bits (102), Expect = 0.065, Method: Composition-based stats.
Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 42/217 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFC---KPADDYLPDPEAVF 59
F ++D ET G D Q VRV + + +P P +
Sbjct: 277 SFTVFDTETTGLMPNKDEIVQIGAVRV-VNGKIVPGEVIDQLVDPGRPIP-----PASTK 330
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GIT + G +A S + F+ + + +N FD + +R +S
Sbjct: 331 VHGIT--DEMVKGAPDAVTSVQQFHTFAKDSVIVA--HNAPFDMAF----LHRYGRES-G 381
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDG-IQWPSRDDGATSFKLQDLALANG--IEHVNAHD 176
WD+ ++D + I L L G I H
Sbjct: 382 LEWDHP-----IMDTVLLSAVVYGTTEIHT-----------LDALCDRLGVTIPVELRHT 425
Query: 177 AKADVYAT----LALVWLIREKKPKLFEYLYDYRNKN 209
A D AT L+ ++ K K F + K+
Sbjct: 426 ALGDAQATAEVLCHLLPILISKGYKTFGDVLTQTRKH 462
>gi|92113396|ref|YP_573324.1| oligoribonuclease [Chromohalobacter salexigens DSM 3043]
gi|91796486|gb|ABE58625.1| Exonuclease [Chromohalobacter salexigens DSM 3043]
Length = 187
Score = 43.6 bits (102), Expect = 0.065, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 52/209 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI- 60
++ V D E G D +R + A + D + V + P+A+
Sbjct: 11 SDLLVWIDLEMTGLDPQRERIIEVATLITDNDLNLVAEGPVL-------AVHQPDALLAG 63
Query: 61 -----------TGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYS 106
+G+T Q+ + AE R+ F PN+ + N++ D
Sbjct: 64 MDEWNTRTHGDSGLT-QRVRESRIDTAEAERQTLAFLKRYVTPNSSPMCGNSVHQD---- 118
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
R R + N D+ + ++P ++
Sbjct: 119 RRFLVREM-PELADFFHYRN--LDVSTLKELAKRWNPQALE------------------- 156
Query: 167 NGIEHVNAHDAKADVYATLALVWLIREKK 195
G E N H A D+ + L L ++
Sbjct: 157 -GFEKRNTHQAMDDIRES--LAELAHYRQ 182
>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
Length = 1438
Score = 43.6 bits (102), Expect = 0.065, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G ++ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYNKIIELAAVKV-HNGEIIDKFERFS---NPHERLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + +E + F + + +N FD + + R +
Sbjct: 477 TDDMLVDAPEIE-----EVLTEFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G+E H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
Length = 1433
Score = 43.6 bits (102), Expect = 0.065, Method: Composition-based stats.
Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 46/204 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEA-- 57
+ + FV++D ET G ++ + A V+V + E I+ E F AD P P
Sbjct: 415 LDSEFVVFDVETTGLSAVYNKIIELAAVKV-KNGEIIDRFERF----AD---PHEPLTNT 466
Query: 58 -VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG-----YNNIRFDDYYSRNIFY 111
+ +TGIT G E E ++ F IG +N FD + F
Sbjct: 467 IIELTGITDDML--KGQPEVE---QVLNEFH----AFIGDAVLVAHNASFDMGFLNTGFQ 517
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ N ++D + P + +L L IE
Sbjct: 518 KMGLG----EAKNP-----VIDTLELGRFLYPTL----------KNHRLNTLCKKFDIEL 558
Query: 172 VNAHDAKADVYATLALV-WLIREK 194
V+ H A D AT L+ ++++
Sbjct: 559 VSHHRAIYDAEATGHLLWRMVKDA 582
>gi|330951466|gb|EGH51726.1| oligoribonuclease [Pseudomonas syringae Cit 7]
Length = 178
Score = 43.6 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|330939856|gb|EGH43089.1| oligoribonuclease [Pseudomonas syringae pv. pisi str. 1704B]
gi|330978958|gb|EGH78017.1| oligoribonuclease [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 178
Score = 43.6 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 58/176 (32%), Gaps = 34/176 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+ + D E G D D + A + D + + V +D+ L A
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL----AKMDEW 60
Query: 61 -------TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSR 107
+G+T Q+ V AE + +F + C N+I D R
Sbjct: 61 NTRQHGGSGLT-QRVRESTVSMAEAEAQTLEFIKLWVPERSSPICG---NSICQD----R 112
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
YR+ ++ + + D+ + +SP+ G+T L D+
Sbjct: 113 RFLYRHM--PTLENYFHYRN-LDVSTLKELAARWSPEL----KFKKGSTHLALDDI 161
>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
Length = 231
Score = 43.6 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD + + + N+
Sbjct: 55 MVKGSDPIDVVLKRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------KAENAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLGWKLIKDAK 161
>gi|260361286|ref|ZP_05774394.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
gi|308114248|gb|EFO51788.1| oligoribonuclease [Vibrio parahaemolyticus K5030]
Length = 148
Score = 43.6 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + + A + D + +
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAE 42
>gi|253572229|ref|ZP_04849632.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
gi|298386580|ref|ZP_06996136.1| exonuclease [Bacteroides sp. 1_1_14]
gi|251838004|gb|EES66092.1| DNA Pol III epsilon chain [Bacteroides sp. 1_1_6]
gi|298260957|gb|EFI03825.1| exonuclease [Bacteroides sp. 1_1_14]
Length = 259
Score = 43.6 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 47/208 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + T+ P PEA
Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE--ETKTMRINPEMHI---PEASSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GI V + + + + + + G+N+ RFD F R D
Sbjct: 60 VHGI-----YDADVADCPTFKEVAKNVARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVD- 113
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----E 170
+D+ + + D F K++ L+ A
Sbjct: 114 --------------IDMTKRKFV------------DVQVIFHKMEQRTLSAAYKFYCEKS 147
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
+AH A+AD AT ++ ++ P L
Sbjct: 148 LEDAHTAEADTRATYEVLKAQLDRYPDL 175
>gi|332882730|ref|ZP_08450341.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332679232|gb|EGJ52218.1| GIY-YIG catalytic domain protein [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 442
Score = 43.6 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 88/253 (34%), Gaps = 36/253 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFITG 62
+ I D ET G + + A R D E + +P D++ +TG
Sbjct: 2 YAILDIETTGGKYDEEGITEIAIYRFDGH-ELTDQFISLINPERPIQDFV-----TKLTG 55
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I K LR+ E ++RI + T I+G+N FD + F R YD R +
Sbjct: 56 IN-NKMLRNAPKFYEVAKRIVEITQD--TIIVGHNA-AFDYRILQTEFRRLGYDYIRTT- 110
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
L + P+ S+ L L + GI H A D
Sbjct: 111 ---------LCTVELSQQLLPE----------KESYSLGKLVRSLGIPMSERHRASGDAL 151
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFG--ASRSNTALI 240
ATL L + EK K + + KN +R + +++ L + G + I
Sbjct: 152 ATLNLFKYLLEKDTK--KTIITASVKNDVRIEMSSRHLKILDELPEKLGIFYMHNEEGKI 209
Query: 241 APVAWHPRYKDSV 253
+ H K V
Sbjct: 210 IYIGKHKNIKKRV 222
>gi|226355514|ref|YP_002785254.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
gi|226317504|gb|ACO45500.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
Length = 1683
Score = 43.6 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+VI D ET D A R + A VRV ++ ++ + + +P A TG
Sbjct: 7 TSYVILDTETTSVDRAEARLLEVAAVRV-EDGRICDTLQLL---VSGERIPREVAEL-TG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
I ++ RDG + +++ F ++G+N FD + +
Sbjct: 62 IRQEELDRDGQPLPDVLKQVLAFMGDLP--VVGHNAQGFDVPLLKRLC 107
>gi|326382785|ref|ZP_08204475.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
gi|326198375|gb|EGD55559.1| oligoribonuclease [Gordonia neofelifaecis NRRL B-59395]
Length = 199
Score = 43.6 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G DV D+ + A + D +
Sbjct: 1 MQDKLVWIDCEMTGLDVGSDKLIEIAALVTDSDLNILGE 39
>gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group]
Length = 436
Score = 43.6 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 28/191 (14%)
Query: 3 NHFVIYDYET---FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAV 58
+D ET +G +F + + + ++ V +P+D + EA+
Sbjct: 21 PEIAFFDVETSMPWGPRERRT-LLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVT--EAL 77
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + AL D + + IH G+N I FD R F
Sbjct: 78 ERKGIT-RGALEDAPPFCDVADNIHNVLH--GRIWAGHNIISFDSEIIREAF-----AEI 129
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S D L ++ + A + K+ +LA + H +
Sbjct: 130 GRSPPEPKGMIDTLPLLTQTFGRR------------AGNMKMANLADYFNL-GPQIHRSL 176
Query: 179 ADVYATLALVW 189
DV L ++
Sbjct: 177 YDVRMNLDVLK 187
>gi|270290279|ref|ZP_06196504.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
acidilactici 7_4]
gi|270281060|gb|EFA26893.1| DnaQ family exonuclease/DinG family helicase [Pediococcus
acidilactici 7_4]
Length = 927
Score = 43.6 bits (102), Expect = 0.068, Method: Composition-based stats.
Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 38/217 (17%)
Query: 9 DYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITGITPQ 66
D ET G V R Q ++ + E+ + K +P + +TGIT Q
Sbjct: 10 DLETTGTGSVEESRIIQIGCAFIEGD-QITETYQT---KINPQMTIPKRIS-RLTGITDQ 64
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + A+ + +I+Q + T + +N + FD + R+ Y
Sbjct: 65 QVRQAPKF-ADVADKIYQKLA--GTVFVAHN-VNFDFPFLNRELVRSGYPELDLK----- 115
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+D + ++L+DL IEH + H A +D AT
Sbjct: 116 ----AIDTVTLSQVLFSR----------TRGYRLRDLTNYLHIEHDDPHSADSDAVATAH 161
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
L I+ +L L +L+ + + PL
Sbjct: 162 LFLKIKAALSEL--------PIVTLEQLVKLGDQLPL 190
>gi|261753605|ref|ZP_05997314.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
gi|261743358|gb|EEY31284.1| DNA polymerase III [Brucella suis bv. 3 str. 686]
Length = 233
Score = 43.6 bits (102), Expect = 0.068, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 26 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 81
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 82 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 138
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 139 MDGARRLW------------RGD------------STKLDHCLAKIGLARMGHRHGALED 174
Query: 181 VYATLAL 187
Y T L
Sbjct: 175 AYLTAGL 181
>gi|239979599|ref|ZP_04702123.1| oligoribonuclease [Streptomyces albus J1074]
gi|291451465|ref|ZP_06590855.1| oligoribonuclease [Streptomyces albus J1074]
gi|291354414|gb|EFE81316.1| oligoribonuclease [Streptomyces albus J1074]
Length = 200
Score = 43.6 bits (102), Expect = 0.068, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 11/121 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
M + V D E G +A D + A + D + + +P D+ L PE V
Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDEALETMPEVVR 60
Query: 60 ITGITPQKA--LRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+ L +G EA+ + + P + N++ D RN R+
Sbjct: 61 KMHTSSGLLAELAEGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTD----RNFLARD 116
Query: 114 F 114
Sbjct: 117 M 117
>gi|56478391|ref|YP_159980.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
gi|81821041|sp|Q5P0T5|ORN_AZOSE RecName: Full=Oligoribonuclease
gi|56314434|emb|CAI09079.1| oligoribonuclease [Aromatoleum aromaticum EbN1]
Length = 183
Score = 43.6 bits (102), Expect = 0.068, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 17/50 (34%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
NH + D E G DR + A V D Q + V D L
Sbjct: 6 NHLIWLDMEMTGLQPDSDRIIEIAIVITDSQLNTVAEAPVIAVHQPDSVL 55
>gi|172040411|ref|YP_001800125.1| DNA polymerase III subunit epsilon [Corynebacterium urealyticum DSM
7109]
gi|171851715|emb|CAQ04691.1| DNA polymerase III, epsilon subunit [Corynebacterium urealyticum
DSM 7109]
Length = 237
Score = 43.6 bits (102), Expect = 0.068, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD---YLPDPEAVFI 60
H + +D ET G + R A VR I ++V + D +P+ +A +
Sbjct: 24 HMLSFDLETTGTNPLSARIVTSAMVR-------IRGSQVEDVELLADPGVEIPE-QASAV 75
Query: 61 TGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
GIT + A G AE R I Q + T ++ N +D R+
Sbjct: 76 HGITTEYAREHGKPHDEVLAETIRAIRQGWEEGATLVV--FNAPYDLTVLRS 125
>gi|148652620|ref|YP_001279713.1| oligoribonuclease [Psychrobacter sp. PRwf-1]
gi|148571704|gb|ABQ93763.1| Exonuclease, RNase T and DNA polymerase III [Psychrobacter sp.
PRwf-1]
Length = 193
Score = 43.6 bits (102), Expect = 0.068, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 65/210 (30%), Gaps = 48/210 (22%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---------PDP 55
+ D E G D D + A + D + VF K +D L
Sbjct: 18 LIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTKQHG 77
Query: 56 EAVFI-----TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
++ I + +T ++A ++ + F + C N+I D R
Sbjct: 78 QSGLIDRVRRSSVTLEQAEQETIA---FLNKWVDE-GKSPMCG---NSICQD----RRFL 126
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
R + N D+ + Y + PD ++ G+E
Sbjct: 127 ARQM-PQLERFFHYRN--LDVSSIKELCYRWRPDILK--------------------GVE 163
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKLFE 200
+H A D+ ++ + R+ KL +
Sbjct: 164 KTGSHLAMDDIRDSIRELKHYRQHFFKLLD 193
>gi|16082354|ref|NP_394831.1| hypothetical protein Ta1376 [Thermoplasma acidophilum DSM 1728]
gi|10640719|emb|CAC12497.1| hypothetical protein [Thermoplasma acidophilum]
Length = 188
Score = 43.6 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITG 62
+ D ET G D V E F +P D + D A+ + G
Sbjct: 2 IFIDTETTGLDPTKCSVISVGAV-------VYEDPSSRFYMEARPDPDAMIDDGALAVNG 54
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRN 113
T + + ++++ ++ + GYN I FD + N
Sbjct: 55 FTKEYLSSIANAMYDMLTTFTEWYASNSSDYTVAGYN-IDFDISFLSQECLMN 106
>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
Length = 231
Score = 43.6 bits (102), Expect = 0.070, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 34/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + AGV++ + E I+ E F + + +TGIT
Sbjct: 1 DVETTGLSAVYDTIIELAGVKM-KNGEIIDKFEAF---IDPGHPLSATTINLTGITDD-- 54
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G + + + +S + + +N FD + + + N+
Sbjct: 55 MVKGSDPIDVVLKRFKEWSADDILVA--HNASFDMGFINTAYEKVGIP------KAENAV 106
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L++ R +Y FK L L I H A D AT
Sbjct: 107 VDTLELARFLY----------------PHFKNHRLNTLTKKFNIILEQHHRAVFDAEATA 150
Query: 186 ALV-WLIREKK 195
L LI++ K
Sbjct: 151 YLGWKLIKDAK 161
>gi|225018549|ref|ZP_03707741.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
DSM 5476]
gi|224948681|gb|EEG29890.1| hypothetical protein CLOSTMETH_02498 [Clostridium methylpentosum
DSM 5476]
Length = 319
Score = 43.6 bits (102), Expect = 0.071, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 33/186 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP---ADDYLPDPEAVFIT 61
+V+ D ET G D D + +R+ + E +ES KP DDY+ + +T
Sbjct: 22 YVVIDLETTGYDPHRDEIIELGALRI-HEGEVVESFSSLT-KPQRDLDDYI-----IQLT 74
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI+ + + F R + F ++ ++G+N + FD + + + +
Sbjct: 75 GISNEMLASAPELSDVFPRYL--DFIG-DSIVVGHN-VHFDVNFIYDTCIKESLKLF--- 127
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
DL+D++ PD TS KL ++ I H + D
Sbjct: 128 ------TNDLVDLLWLSRKLLPDL----------TSHKLCRVSSHFNICVEGMHRSLFDC 171
Query: 182 YATLAL 187
T
Sbjct: 172 KTTFEC 177
>gi|149927960|ref|ZP_01916210.1| oligoribonuclease [Limnobacter sp. MED105]
gi|149823399|gb|EDM82632.1| oligoribonuclease [Limnobacter sp. MED105]
Length = 191
Score = 43.6 bits (102), Expect = 0.071, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
D E G D D+ + A V D + +E V +DD L
Sbjct: 2 WVDMEMTGLDPFNDKVIEVAVVVTDSELNVLEEGPVLAIHQSDDIL 47
>gi|152998196|ref|YP_001343031.1| exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
gi|150839120|gb|ABR73096.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp. MWYL1]
Length = 187
Score = 43.6 bits (102), Expect = 0.071, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 28/158 (17%)
Query: 44 FCKP-ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYN 97
+ KP +D+Y+ P A+ +TG++ ++ RDG+ E + + N ++G+N
Sbjct: 43 YLKPISDEYI--PAALEVTGLSLEQLNRDGLEPIEAMTQFKTWVESLIEKDENVVLVGFN 100
Query: 98 NIRFDDYYSRNIF-YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT 156
FD + F Y + + I A + + + D
Sbjct: 101 A-SFDWSFINYYFHYFLGENPF------------------GIAALDIKSMYFGASDSSWR 141
Query: 157 SFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK 194
S + ++ E HDA D L LIR+K
Sbjct: 142 STRSSEIEKVVKPESAGDHDALHDAIYQAELFSLIRKK 179
>gi|319638605|ref|ZP_07993367.1| DNA polymerase III subunit [Neisseria mucosa C102]
gi|317400354|gb|EFV81013.1| DNA polymerase III subunit [Neisseria mucosa C102]
Length = 463
Score = 43.6 bits (102), Expect = 0.072, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 30/193 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + DR + A VR ++ V C+ +++ +TGI +
Sbjct: 25 DLETTGGNFYQDRITEVALVRFEQGRATHYEQLVNPCRSIPEFV-----ARLTGI-HDET 78
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+++ V A+ + + ++ +N+ RFD + R+ F R D S
Sbjct: 79 VKNAPVFADIAADLLPLLQ--GAVVVAHNS-RFDYTFLRHEFARIHTDFAAPS------- 128
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
L ++ P+ S L + GI+ N H A DV A +
Sbjct: 129 ---LCTVQLSRRLYPEFY--------KHS--LDSIIERTGIQTANRHRAMTDVVALCDYL 175
Query: 189 WL-IREKKPKLFE 200
L + EK + ++
Sbjct: 176 ELSLTEKNHQQWD 188
>gi|304384907|ref|ZP_07367253.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
acidilactici DSM 20284]
gi|304329101|gb|EFL96321.1| DNA-directed DNA polymerase III epsilon subunit [Pediococcus
acidilactici DSM 20284]
Length = 927
Score = 43.6 bits (102), Expect = 0.072, Method: Composition-based stats.
Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 38/217 (17%)
Query: 9 DYETFGR-DVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITGITPQ 66
D ET G V R Q ++ + E+ + K +P + +TGIT Q
Sbjct: 10 DLETTGTGSVEESRIIQIGCAFIEGD-QITETYQT---KINPQMTIPKRIS-RLTGITDQ 64
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ + A+ + +I+Q + T + +N + FD + R+ Y
Sbjct: 65 QVRQAPKF-ADVADKIYQKLA--GTVFVAHN-VNFDFPFLNRELVRSGYPELDLK----- 115
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+D + ++L+DL IEH + H A +D AT
Sbjct: 116 ----AIDTVTLSQVLFSR----------TRGYRLRDLTNYLHIEHDDPHSADSDAVATAH 161
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL 223
L I+ +L L +L+ + + PL
Sbjct: 162 LFLKIKAALSEL--------PIVTLEQLVKLGDQLPL 190
>gi|254489685|ref|ZP_05102881.1| exonuclease family [Methylophaga thiooxidans DMS010]
gi|224465094|gb|EEF81347.1| exonuclease family [Methylophaga thiooxydans DMS010]
Length = 488
Score = 43.6 bits (102), Expect = 0.072, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 64/196 (32%), Gaps = 28/196 (14%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
VI D ET G + DR + A + V ++ + +P P +T
Sbjct: 8 PPSMVILDCETTGGRASRDRLTEIALIEV-EDGHVVKRWQTLLNPLRP--IP-PWITRLT 63
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + D E + + I+ +N RFD + R F R
Sbjct: 64 GIT-DATVADAPTFDEIADELFACLD--GKVIVAHNA-RFDYSFLRQSFQRCG------- 112
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ GN L ++ P+ R G L + G+ N H A AD
Sbjct: 113 YTLGNKT---LCSVKLSRQLFPE-----HRSHG-----LDRIIERLGLTIDNRHRAMADT 159
Query: 182 YATLALVWLIREKKPK 197
LA I + P
Sbjct: 160 EVLLAFFEHISAQFPA 175
>gi|163802739|ref|ZP_02196629.1| oligoribonuclease [Vibrio sp. AND4]
gi|159173446|gb|EDP58268.1| oligoribonuclease [Vibrio sp. AND4]
Length = 181
Score = 43.6 bits (102), Expect = 0.072, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + + A + D + +
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAE 42
>gi|330873800|gb|EGH07949.1| oligoribonuclease [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 178
Score = 43.6 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|86134050|ref|ZP_01052632.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
gi|85820913|gb|EAQ42060.1| DNA polymerase III, epsilon subunit [Polaribacter sp. MED152]
Length = 275
Score = 43.6 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T V +D ET G ++A DR + + ++V + ++ + P + +P A +
Sbjct: 5 LTKPIVFFDLETTGVNIATDRIVEISILKVFPNGN--KESKTWLVNPEIE-IPQ-GATDV 60
Query: 61 TGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
GIT V E F + ++ + + + G+N+ RFD R D
Sbjct: 61 HGIT----NEKVVTEPTFKELAGKVSEMIA--GCDLAGFNSNRFDIPLLAEELMRAGID 113
>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 1445
Score = 43.6 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E I+ + F + + +T IT
Sbjct: 426 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 481
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++ EA ++ F+ C +N++FD + R Y
Sbjct: 482 -DEMVQAADDEAVVIKQFMDFYGNDPLCG---HNVQFDVGFVDAALKRCGYPEI------ 531
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L L + + H A D AT
Sbjct: 532 ---SQPVVDTLEVSRLLHP--------EQSRHT--LDSLCRKYNVPLEHHHRANQDAEAT 578
>gi|308068487|ref|YP_003870092.1| DNA polymerase III subunit epsilon [Paenibacillus polymyxa E681]
gi|305857766|gb|ADM69554.1| DNA polymerase III, epsilon chain [Paenibacillus polymyxa E681]
Length = 245
Score = 43.6 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 37/213 (17%), Positives = 60/213 (28%), Gaps = 36/213 (16%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D ET G D F +RV + E F+ + +TGIT
Sbjct: 61 VVFDLETTGFSAQHGDEILSFGAIRVVGDM--VMEKEQFYTLVNPRTVIPEHITELTGIT 118
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + D +H F S ++ + D + ++
Sbjct: 119 --REMTDQAPP--LMNGLHDFMSFVGGRVLVAHASAHDKAFLNAALWKTSKVQLTHR--- 171
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+LD M P Q ++ L +L I H A D T
Sbjct: 172 ------VLDTMMLAKWLEPQQHQ---------TYSLDELLAYQSIPIEGRHHALEDAKMT 216
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDI 217
KL+ K + L D+
Sbjct: 217 -----------AKLWVAYVQEMLKRNVTNLADV 238
>gi|212639167|ref|YP_002315687.1| hypothetical protein Aflv_1334 [Anoxybacillus flavithermus WK1]
gi|212560647|gb|ACJ33702.1| 3'-5' exonuclease related protein [Anoxybacillus flavithermus WK1]
Length = 240
Score = 43.6 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 45/197 (22%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFC-------KPADDYLPDP 55
F++ D ET G D A ++ +C + + +
Sbjct: 57 TFILLDTETTGFSPQRGDEIFSLAALKTKN-----GEPLDLYCSNFRPKRRIPEHVV--- 108
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNF 114
+TGIT ++E E IH S N + ++GY+ I+ D + RN+
Sbjct: 109 ---TLTGITNDDVAYAPLLEEE----IHHILSFLNHSILLGYH-IQHDVAFLNEFLSRNY 160
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + ++ +M IY S +P+ DD A SF L ++
Sbjct: 161 RTVLQQT------TIEMRKIMECIYHES-----FPTLDD-ALSF--YHLTP------IDR 200
Query: 175 HDAKADVYATLALVWLI 191
H AK DV + + +
Sbjct: 201 HTAKGDVMSLFEMWKRV 217
>gi|153008185|ref|YP_001369400.1| DNA polymerase III subunit epsilon [Ochrobactrum anthropi ATCC
49188]
gi|151560073|gb|ABS13571.1| DNA polymerase III, epsilon subunit [Ochrobactrum anthropi ATCC
49188]
Length = 231
Score = 43.6 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 27/177 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T + P + PEA+ + GI+
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELINKF-PTGRTFHKYINPQGRQV-HPEALAVHGISN 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
++ L F+ + +F + + +N FD + R +
Sbjct: 62 EQLLDK----PTFAEVLDEFLEFFDGAKLVAHNAMFDLGFINAELARLGQAEIQSE---- 113
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
D L + R + P+ L L GIE H H A D
Sbjct: 114 -RIIDTLALARRKHPMGPNS--------------LDALCKRYGIENGHRTLHGALLD 155
>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
[Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
Length = 1411
Score = 43.6 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E I+ + F + + +T IT
Sbjct: 392 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 447
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++ EA ++ F+ C +N++FD + R Y
Sbjct: 448 -DEMVQAADDEAVVIKQFMDFYGNDPLCG---HNVQFDVGFVDAALKRCGYPEI------ 497
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L L + + H A D AT
Sbjct: 498 ---SQPVVDTLEVSRLLHP--------EQSRHT--LDSLCRKYNVPLEHHHRANQDAEAT 544
>gi|257482419|ref|ZP_05636460.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289623748|ref|ZP_06456702.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289648635|ref|ZP_06479978.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 2250]
gi|330865886|gb|EGH00595.1| oligoribonuclease [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|331009756|gb|EGH89812.1| oligoribonuclease [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 178
Score = 43.6 bits (102), Expect = 0.074, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|265989936|ref|ZP_06102493.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
gi|263000605|gb|EEZ13295.1| DNA polymerase III [Brucella melitensis bv. 1 str. Rev.1]
Length = 233
Score = 43.6 bits (102), Expect = 0.075, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 26 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 81
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 82 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 138
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 139 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 174
Query: 181 VYATLAL 187
Y T L
Sbjct: 175 AYLTAGL 181
>gi|237798271|ref|ZP_04586732.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021123|gb|EGI01180.1| oligoribonuclease [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 178
Score = 43.6 bits (102), Expect = 0.075, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
Length = 1487
Score = 43.6 bits (102), Expect = 0.076, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 36/191 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ + FV++D ET G D+ + V+V+ + + +P P E
Sbjct: 448 LDDAFVVFDIETTGFSSVKDKIIEIGAVKVEN-----GKIVSRYSTFVNPEVPIPFEITK 502
Query: 60 ITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+T IT + +E EF + ++ +N FD + R +
Sbjct: 503 LTSITDAMVIDAPKIETVLPEFMEYV-------GDAVLVAHNAGFDVGFIEENCRRLGME 555
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
S +D + P + +KL +A GI N H
Sbjct: 556 RKLTS----------VDTVALARVLLPTL----------SRYKLNIVAKTLGISLENHHR 595
Query: 177 AKADVYATLAL 187
A D AT +
Sbjct: 596 AVDDAGATAEI 606
>gi|26987095|ref|NP_742520.1| DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
gi|24981722|gb|AAN65984.1|AE016227_5 exonuclease [Pseudomonas putida KT2440]
Length = 236
Score = 43.6 bits (102), Expect = 0.076, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 33/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D ET G + D+ V IE + F + + L P +V I G+
Sbjct: 45 DLETSGLNPNRDQVLSIGAV-------AIEDGAIDFAQQFERTLHRPLQKTNASVLIHGL 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P AL G AE + F + F + + + R +S +
Sbjct: 98 GPS-ALAAGCDPAEALLDLLDFIGNSP-------VLAFHAPFDQRMLARALKESLGYRLQ 149
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ LD+ +PD + R+ G L D G++ H A AD
Sbjct: 150 SP-----FLDIAELAPMLNPDTV---LREAG-----LDDWVARFGLQVEERHHASADAQV 196
Query: 184 TLALVWLIREK 194
T L ++ +
Sbjct: 197 TAELALILFSQ 207
>gi|29654538|ref|NP_820230.1| oligoribonuclease [Coxiella burnetii RSA 493]
gi|153208846|ref|ZP_01947070.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
gi|154707040|ref|YP_001424673.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
gi|161829936|ref|YP_001597086.1| oligoribonuclease [Coxiella burnetii RSA 331]
gi|165921448|ref|ZP_02219636.1| oligoribonuclease [Coxiella burnetii RSA 334]
gi|212212380|ref|YP_002303316.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
gi|212218651|ref|YP_002305438.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
gi|37999374|sp|Q83C93|ORN_COXBU RecName: Full=Oligoribonuclease
gi|29541805|gb|AAO90744.1| oligoribonuclease [Coxiella burnetii RSA 493]
gi|120575697|gb|EAX32321.1| oligoribonuclease [Coxiella burnetii 'MSU Goat Q177']
gi|154356326|gb|ABS77788.1| oligoribonuclease [Coxiella burnetii Dugway 5J108-111]
gi|161761803|gb|ABX77445.1| oligoribonuclease [Coxiella burnetii RSA 331]
gi|165916763|gb|EDR35367.1| oligoribonuclease [Coxiella burnetii RSA 334]
gi|212010790|gb|ACJ18171.1| oligoribonuclease [Coxiella burnetii CbuG_Q212]
gi|212012913|gb|ACJ20293.1| oligoribonuclease [Coxiella burnetii CbuK_Q154]
Length = 183
Score = 43.6 bits (102), Expect = 0.076, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G D DR + A + + + +
Sbjct: 6 DNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAE 42
>gi|313496718|gb|ADR58084.1| DNA polymerase III, epsilon subunit [Pseudomonas putida BIRD-1]
Length = 236
Score = 43.6 bits (102), Expect = 0.077, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 33/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D ET G + D+ V IE + F + + L P +V I G+
Sbjct: 45 DLETSGLNPNRDQVLSIGAV-------AIEDGAIDFAQQFERTLHRPLQKTNASVLIHGL 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P AL G AE + F + F + + + R +S +
Sbjct: 98 GPS-ALAAGCDPAEALLDLLDFIGNSP-------VLAFHAPFDQRMLARALKESLGYRLQ 149
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ LD+ +PD + R+ G L D G++ H A AD
Sbjct: 150 SP-----FLDIAELAPMLNPDTV---LREAG-----LDDWVARFGLQVEERHHASADAQV 196
Query: 184 TLALVWLIREK 194
T L ++ +
Sbjct: 197 TAELALILFSQ 207
>gi|116051228|ref|YP_789941.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
UCBPP-PA14]
gi|296388274|ref|ZP_06877749.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
gi|115586449|gb|ABJ12464.1| putative nuclease [Pseudomonas aeruginosa UCBPP-PA14]
Length = 208
Score = 43.6 bits (102), Expect = 0.077, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 29/195 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET D V V R + + +P D E++ I +
Sbjct: 36 DLETTSLDPRRADVLSIGAVLVRRGKLVMGERLELYVEPPPSL--DAESIRIHKLRRADL 93
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY----SRNIFYRNFYDSYRWSWDN 124
+E + R++ F ++GY + FD R +F R ++
Sbjct: 94 EGQLQLE-QALRQLLAFIGDRP--LLGY-YLSFDVAVLNRHLRQLFDRQLHNPS------ 143
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+++ + +P D + LA A + H A D A
Sbjct: 144 -------IEISSLYH--RKVSRHFP---DAHIDLRFDTLARALDVPVSGRHTALGDAQAV 191
Query: 185 LAL-VWLIREKKPKL 198
+ + L++ PK+
Sbjct: 192 ALMFMRLLKGPAPKV 206
>gi|320321892|gb|EFW77988.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. B076]
gi|320331003|gb|EFW86977.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
gi|330872242|gb|EGH06391.1| oligoribonuclease [Pseudomonas syringae pv. glycinea str. race 4]
Length = 178
Score = 43.6 bits (102), Expect = 0.078, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|311895419|dbj|BAJ27827.1| putative exonuclease [Kitasatospora setae KM-6054]
Length = 235
Score = 43.6 bits (102), Expect = 0.078, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 29/181 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRV-----DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+D ET G D R A V + V P D EA I G
Sbjct: 11 FDLETTGTDPEESRIVTAAVVDTLGGGVQGATTWLLDPGV----PIPD-----EAAAIHG 61
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
IT +A +G AE I + + ++ +N FD R+ +
Sbjct: 62 ITDAEARANGRPAAEAIEEIARTLAERLAAGRPVVAFNA-PFDLSLLDAELRRHGLPTLA 120
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ ++D M A G+ + LQ + G+E +AH+A +
Sbjct: 121 DRLGGPVAP--VVDAMVVDRALD-------KYRKGSRT--LQRVCEVYGVELRDAHEAGS 169
Query: 180 D 180
D
Sbjct: 170 D 170
>gi|28872064|ref|NP_794683.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
gi|213967916|ref|ZP_03396062.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
gi|301384436|ref|ZP_07232854.1| oligoribonuclease [Pseudomonas syringae pv. tomato Max13]
gi|302132276|ref|ZP_07258266.1| oligoribonuclease [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|37999378|sp|Q87VI6|ORN_PSESM RecName: Full=Oligoribonuclease
gi|28855317|gb|AAO58378.1| oligoribonuclease [Pseudomonas syringae pv. tomato str. DC3000]
gi|213927259|gb|EEB60808.1| oligoribonuclease [Pseudomonas syringae pv. tomato T1]
gi|331014602|gb|EGH94658.1| oligoribonuclease [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 178
Score = 43.6 bits (102), Expect = 0.078, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|289672571|ref|ZP_06493461.1| oligoribonuclease [Pseudomonas syringae pv. syringae FF5]
Length = 178
Score = 43.2 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D D + A + D + + V +D+ L
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEIATIITDSELNTLAEGPVIAVHQSDETL 54
>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
Length = 1432
Score = 43.2 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 38/201 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEA-- 57
MT +V++D ET G + + A V++ + E I+ E F AD P P
Sbjct: 414 MTEEYVVFDVETTGLSAVYNTIIELAAVKI-KNGEIIDRFESF----AD---PHEPLTNT 465
Query: 58 -VFITGITPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ +TGIT + G E E + H+F T + +N FD + + +
Sbjct: 466 IIELTGITDD--MVKGQPEVGEVLKDFHEFV---GTATLVAHNASFDMGFLNVGYQKIGL 520
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
G++ ++D + P+ + +L L IE V+ H
Sbjct: 521 ---------GDATNPVIDTLELGRFLYPEL----------KNHRLNTLCKKFDIELVSHH 561
Query: 176 DAKADVYAT-LALVWLIREKK 195
A D AT L ++R+
Sbjct: 562 RAIYDAEATGYLLWKMVRDAN 582
>gi|262184889|ref|ZP_06044310.1| oligoribonuclease [Corynebacterium aurimucosum ATCC 700975]
Length = 214
Score = 43.2 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D + A V D + ++
Sbjct: 12 NDRLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDE 49
>gi|195542024|gb|ACF98221.1| putative DNA polymerase III epsilon subunit [uncultured bacterium
1114]
Length = 312
Score = 43.2 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 42/206 (20%), Positives = 64/206 (31%), Gaps = 57/206 (27%)
Query: 9 DYETFGRDVALDRPAQFAGVRV-------DRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
D ET G D DR VR+ R +E + + PA A I
Sbjct: 32 DTETTGLDPGRDRIVAIGAVRLHGRRLYPSRTFETLVRPGI--SIPA-------SASAIH 82
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
GI A+ G I S ++G+ ++ FD R+ F
Sbjct: 83 GI--GDAMVAGAP---GMAEIWPRLSPWLAGRVVLGH-HVDFDLAMIGAAARRHGFSWT- 135
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + LD R + A DG++ L + A +G+
Sbjct: 136 -EPFA------------LDTARLVAAL-----------DGSSPVDLDEAAQRHGVTLEGR 171
Query: 175 HDAKADVYATLALVWLIREKKPKLFE 200
H A D +L + P+L E
Sbjct: 172 HSALGD---SLIAARVYLRLVPRLVE 194
>gi|332980705|ref|YP_004462146.1| DNA polymerase III, subunit epsilon [Mahella australiensis 50-1
BON]
gi|332698383|gb|AEE95324.1| DNA polymerase III, epsilon subunit [Mahella australiensis 50-1
BON]
Length = 288
Score = 43.2 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 30/181 (16%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFIT 61
N FV D ET G + D+ + A V+ + + I+ + +P I
Sbjct: 113 NEFVAIDLETTGLNPINDKIIEVAAVKF-KDGQIIDRFTTL---INPEIHIPS-GITRIN 167
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT + ++D V AE + F I+ +N FD + ++ +D
Sbjct: 168 HIT-DEMVKDAPVLAEVMPCLVNFIEDS---ILVMHNASFDLKFLKHHAMNFGHDI---- 219
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
NS D L R I++ G ++KL +A GI + H A D
Sbjct: 220 ---NNSYIDTLPTCRNIFS-------------GLENYKLPTIASHLGICGDSFHRACNDA 263
Query: 182 Y 182
Sbjct: 264 E 264
>gi|226952875|ref|ZP_03823339.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
gi|226836386|gb|EEH68769.1| oligoribonuclease [Acinetobacter sp. ATCC 27244]
Length = 186
Score = 43.2 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 58/226 (25%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---- 52
M++ + D E G D D+ + A + D + V +D L
Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAEGPVLAVHQSDVILNAMD 60
Query: 53 -----PDPEAVFI-----TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
++ I + +T Q A + + EF ++ S P N+I D
Sbjct: 61 EWNTKQHGQSGLIERVRRSKLTAQDAEQQTL---EFLKKWVNPKSSPMCG----NSICQD 113
Query: 103 DYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD 162
R +R + N D+ V + P+ +
Sbjct: 114 ----RRFLHR-LMPELEQFFHYRN--LDVSSVKELAKRWRPEIMS--------------- 151
Query: 163 LALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNK 208
G++ +H A D+ ++A + RE + NK
Sbjct: 152 -----GLKKNASHLAMDDIRDSIAELKYYRE------YFFIMNSNK 186
>gi|183598873|ref|ZP_02960366.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
gi|188021081|gb|EDU59121.1| hypothetical protein PROSTU_02308 [Providencia stuartii ATCC 25827]
Length = 213
Score = 43.2 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + + T F +P + +P A+ TGI
Sbjct: 23 DVETGGFNAKTDGLLEIAAITLKMDKDGWLSP-DETLHFHVEPFEGANLEPAALAFTGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + + N II +N FD + R RN
Sbjct: 82 PTNPLRGAVSEYEALHAIFKMVRKGMKATDCNRAIIVAHNATFDHSFVMNAAERAGLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus pseudintermedius ED99]
Length = 1435
Score = 43.2 bits (101), Expect = 0.081, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 43/189 (22%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI--- 60
+V++D ET G D+ + A V+V + E I+ E F +P
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-KNGEIIDKFERF---------SNPHEKLTETI 468
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFY 115
T IT +E + F + + +N FD + + R +
Sbjct: 469 KNLTHITDDMLKDAPEIE-----EVLTEFKAWVGDAIFVAHNA-SFDMGFIDTGYERLGF 522
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
N+ D L++ R I G L LA G+E H
Sbjct: 523 GPSA------NAVIDTLELSRT--------INTSYGKHG-----LNFLAKKYGVELTQHH 563
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 564 RAIYDTEAT 572
>gi|308069470|ref|YP_003871075.1| DnaQ family exonuclease/DinG family helicase, [Paenibacillus
polymyxa E681]
gi|305858749|gb|ADM70537.1| DnaQ family exonuclease/DinG family helicase, putative
[Paenibacillus polymyxa E681]
Length = 955
Score = 43.2 bits (101), Expect = 0.081, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 27/183 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F + D+ET G A D Q +D I + P +P P +TGIT
Sbjct: 3 FAVLDFETTGTQSADD-IIQVGLAIIDHD-NSISRVYGSYVNPGRS-IP-PFITGLTGIT 58
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+E E + ++G+N + FD + +N R Y + +
Sbjct: 59 DDDVKDAPALE-EMMMELVPMLDD--VVLVGHN-VAFDFNFLQNALDRCGYLPFSGRILD 114
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
D L +M P +S++L ++ + H H A +D AT
Sbjct: 115 ---TMDFLKIMF------PSL----------SSYQLGFVSSEFELAHDRPHQADSDALAT 155
Query: 185 LAL 187
+
Sbjct: 156 AEV 158
>gi|157370439|ref|YP_001478428.1| ribonuclease T [Serratia proteamaculans 568]
gi|157322203|gb|ABV41300.1| ribonuclease T [Serratia proteamaculans 568]
Length = 226
Score = 43.2 bits (101), Expect = 0.081, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + ++ + T F +P + PEA+ GI
Sbjct: 34 DIETAGFNAKTDALLEIAAVTLKMDEDGWLQQ-DETLHFHVEPFEGANLQPEALAFNGID 92
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 93 PSNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLKRN 152
Query: 114 FYDSYRW 120
+ +
Sbjct: 153 PFHPFAT 159
>gi|254699857|ref|ZP_05161685.1| DNA polymerase III, epsilon chain [Brucella suis bv. 5 str. 513]
Length = 224
Score = 43.2 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 17 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 72
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 73 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 129
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 130 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 165
Query: 181 VYATLAL 187
Y T L
Sbjct: 166 AYLTAGL 172
>gi|237738098|ref|ZP_04568579.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
gi|229419978|gb|EEO35025.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
Length = 474
Score = 43.2 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+++I ET G + +D + +R++ +++ + F KP + +P EA I G
Sbjct: 5 ENYIIVSLETTGLNHLVDEILKIEAIRIENG-NIVDTFKEFI-KPKFE-IPK-EASRING 60
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + +E + + F ++ YN F + F R + +
Sbjct: 61 ITFEDVKNSPSIEDVLDK--FKNFRKKGDILVAYNA-EFVSKFIGFNFKRYKNSIFSHEF 117
Query: 123 DNGNSRWDLLDVMRAIY 139
DLL ++R IY
Sbjct: 118 ------IDLLSLVRYIY 128
>gi|145580424|pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
Exonuclease Domain From Thermotoga Maritima
gi|145580425|pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
Exonuclease Domain From Thermotoga Maritima
Length = 186
Score = 43.2 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 14/107 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D+ET G D +D + V++ + ++ KP+ + ++ ITGI
Sbjct: 13 TFVVLDFETTGLDPQVDEIIEIGAVKIQGG-QIVDEYHTLI-KPSREI--SRKSSEITGI 68
Query: 64 TPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
T + +E EF + + I+ +N FD + R
Sbjct: 69 TQEMLENKRSIEEVLPEFLGFLED------SIIVAHNA-NFDYRFLR 108
>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type
[Staphylococcus epidermidis VCU121]
Length = 1438
Score = 43.2 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 59/183 (32%), Gaps = 31/183 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D+ + A V+V E I+ E F + +T I
Sbjct: 421 TYVVFDVETTGLSNQYDKIIELAAVKV-HNGEIIDKFERFS---NPHEKLSETIINLTHI 476
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +E + F + + +N FD + + R +
Sbjct: 477 TDDMLTDAPEIE-----DVLTDFKEWVGDAIFVAHNA-SFDMGFIDTGYERLGFGP---- 526
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D L++ R I G L LA G++ H A D
Sbjct: 527 --STNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVDLTQHHRAIYDT 571
Query: 182 YAT 184
AT
Sbjct: 572 EAT 574
>gi|312795584|ref|YP_004028506.1| DNA polymerase III, epsilon chain [Burkholderia rhizoxinica HKI
454]
gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
rhizoxinica HKI 454]
Length = 247
Score = 43.2 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 58/178 (32%), Gaps = 29/178 (16%)
Query: 9 DYETFGRD-VALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
D ET G + DR + V V+RQ + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNAKGGDRIIEIGCVEIVNRQLT--GNNLHFYVNPERD--SDPGALAVHGLTTE 62
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
AE + + F + I +N FD + F + +
Sbjct: 63 FLRDKPKF-AEIADALRDFVKDADIII---HNAPFDIGFLNAEFAMLGLPPFC----DHC 114
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
+++D + A P S L L GI H H A D
Sbjct: 115 G--EVIDTLVQAKAMFPG---------KRNS--LDALCERFGISNAHRTLHGALLDAE 159
>gi|240142703|ref|YP_002967216.1| Protein with DNA-directed DNA polymerase-like domain
[Methylobacterium extorquens AM1]
gi|240012650|gb|ACS43875.1| Protein with DNA-directed DNA polymerase-like domain
[Methylobacterium extorquens AM1]
Length = 754
Score = 43.2 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 30/193 (15%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D+ET G DR + V + + + ITGI
Sbjct: 544 FVVIDFETTGLSPNNGDRVIEVGAVEI-VDGRIGRRFQSLA---NPGFPVSARITAITGI 599
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + D AE R + F T + +N FD + + R
Sbjct: 600 SNAMLV-DAPPLAEVIREVSA-FIEGATLVA--HNAGFDRRFLQAEMERLGL-------- 647
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA-HDAKADVY 182
WD +++ + +P G S+KL LA G+ +A H A AD
Sbjct: 648 -----WDDREMLCTMRLGKRA---YP----GLGSYKLAFLAEHAGVALPDAMHRALADAM 695
Query: 183 ATLALVWLIREKK 195
AT L ++RE++
Sbjct: 696 ATAELFLVMRERE 708
>gi|256059183|ref|ZP_05449390.1| DNA polymerase III, epsilon chain [Brucella neotomae 5K33]
Length = 224
Score = 43.2 bits (101), Expect = 0.083, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 17 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 72
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D + +
Sbjct: 73 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPFYCT 129
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 130 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 165
Query: 181 VYATLAL 187
Y T L
Sbjct: 166 AYLTAGL 172
>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
Length = 236
Score = 43.2 bits (101), Expect = 0.084, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 54/176 (30%), Gaps = 29/176 (16%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D A R + A V + + P D DPEA+ + G+T +
Sbjct: 7 DTETTGLDPAQGHRVVELACVEM-ENRSLTGRHLHLYLNPGRD--SDPEALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E E ++++ + I +N FD + R + NS
Sbjct: 64 LSGHPRFE-EVAQQLVDYVKDAEVII---HNAAFDVKFLNAELTRAGLPVF-------NS 112
Query: 128 -RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
+ D + P S L L GI H H A D
Sbjct: 113 LCGKITDSLLHARELHPG---------KRNS--LDALCERYGISNAHRTLHGALLD 157
>gi|256390707|ref|YP_003112271.1| exonuclease RNase T and DNA polymerase III [Catenulispora
acidiphila DSM 44928]
gi|256356933|gb|ACU70430.1| Exonuclease RNase T and DNA polymerase III [Catenulispora
acidiphila DSM 44928]
Length = 295
Score = 43.2 bits (101), Expect = 0.084, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET GRD R A V D + + F EA I GIT +
Sbjct: 75 FDTETTGRDPKSVRIVSAALVTSD------GAEKAFL--IDPGVEIPAEATAIHGITTEY 126
Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
A G I + T ++ +N +D RN
Sbjct: 127 AREHGTEPRRTLDEIADALAAELRAGTPLVVFNA-PYDLTLLEAELARNGLTPLA 180
>gi|254282911|ref|ZP_04957879.1| ribonuclease T [gamma proteobacterium NOR51-B]
gi|219679114|gb|EED35463.1| ribonuclease T [gamma proteobacterium NOR51-B]
Length = 214
Score = 43.2 bits (101), Expect = 0.084, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 65/191 (34%), Gaps = 32/191 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFITGITP 65
D ET G + D + A V + I + + C +P + +P A+ TGI P
Sbjct: 22 DVETGGFNADTDAVLEIAATLVGMNDDGILTPKQTLCHNVEPFEGANLEPSALEFTGIDP 81
Query: 66 QKALRDGVVEA----EFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ LRD V EA E I + ++G+N FD + +
Sbjct: 82 ESPLRDAVPEAIAFGEIFSAIRKEIREQGCNRAILVGHNA-HFDAGFINAA---SMRADI 137
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHD 176
+ + + S +D + Y G T L GI+ N AH
Sbjct: 138 KRNPFHPFSHFDTATLAGLAY--------------GQTV--LAKACRTAGIDFDNNEAHS 181
Query: 177 AKADVYATLAL 187
A D T L
Sbjct: 182 AAYDAAKTAEL 192
>gi|282881940|ref|ZP_06290585.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
gi|281298215|gb|EFA90666.1| DNA polymerase III PolC-type [Peptoniphilus lacrimalis 315-B]
Length = 298
Score = 43.2 bits (101), Expect = 0.085, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 34/192 (17%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP-ADDYLPDPEAVFIT 61
N + + D ET G D + G+ R + ++ + + DY D +T
Sbjct: 12 NDYCVLDTETTGLSSYYDEIIEI-GILKVRDNKIVDR----YSQLIKPDYEIDSFITSLT 66
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + + F F + IIG+N FD + F +
Sbjct: 67 GITNEMVKE--MPAINFVMSDVLSFIGKD-VIIGHN-TSFDIRFLNAGF----------N 112
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N D M+ P+ +L DL G+ + N H + AD
Sbjct: 113 IELDNKYMD---TMQFARKLFPEL----------KHHRLSDLTSYLGLSN-NEHRSIADC 158
Query: 182 YATLALVWLIRE 193
AT L I++
Sbjct: 159 IATKELYDSIKD 170
>gi|255326994|ref|ZP_05368070.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
gi|255296211|gb|EET75552.1| DNA polymerase III subunit epsilon [Rothia mucilaginosa ATCC 25296]
Length = 228
Score = 43.2 bits (101), Expect = 0.086, Method: Composition-based stats.
Identities = 40/200 (20%), Positives = 63/200 (31%), Gaps = 34/200 (17%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV R + + +D Q + E A + GIT +
Sbjct: 8 FDLETTGVDVTTARIVTASLILLDPQGNVVRRGEWLA---DPGVEIPAGAAAVHGITTEY 64
Query: 68 ALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFD-----DYYSRNIFYRNFYDSY 118
A G E + I ++ II +N +D R+
Sbjct: 65 AREHGRPAREVVWELAGAIGA-LNLDGVPIIAFNA-AYDFSVLHHEMLRHNIANGELPP- 121
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
V+ Y I R G + L+ LA G+ NAH +
Sbjct: 122 --------------GVVLDPYVLHKHVIP---RKRGKRT--LEVLATEYGVSLENAHTSA 162
Query: 179 ADVYATLALVWLIREKKPKL 198
D A L+ + E+ P++
Sbjct: 163 DDALAAERLLVKLTEQFPEV 182
>gi|53805219|ref|YP_113058.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
gi|59798004|sp|Q60BD8|ORN_METCA RecName: Full=Oligoribonuclease
gi|53758980|gb|AAU93271.1| oligoribonuclease [Methylococcus capsulatus str. Bath]
Length = 181
Score = 43.2 bits (101), Expect = 0.086, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D D + A + D Q +
Sbjct: 5 AQNLIWIDLEMTGLDPQNDAIIEIATIVTDGQLNVLAE 42
>gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
Length = 243
Score = 43.2 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + + P D DP A+ + G+T +
Sbjct: 7 DTETTGLNPRTGDRLIEIGCVEL-LNRRLTGNNLHIYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLGLPPFT 111
>gi|313672047|ref|YP_004050158.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
DSM 19672]
gi|312938803|gb|ADR17995.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
DSM 19672]
Length = 201
Score = 43.2 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 51/221 (23%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G + D+ + +++ ++ + KP D ++P+ I G
Sbjct: 16 SFVVFDLETTGLNPDNGDQIIEMGAFKIEEGFKLVRDPFHTMVKP-DIFIPN----EIHG 70
Query: 63 ITPQKALRDG---VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
IT + +F FS + ++ + + D + R D
Sbjct: 71 ITEMELKNAPDICTALYDFID-----FSR-GSVLVAHKASK-DIAFLRAAMREYLID--- 120
Query: 120 WSWDNGNSRWDLL--DVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNA 174
+D L D ++ PD FK L L + I +
Sbjct: 121 -------DSFDFLVIDTIKFSQRLYPD-------------FKYHNLDYLIEKHHISINSK 160
Query: 175 ---HDAKADVYAT----LALVWLIREKKPKLFEYLYDYRNK 208
H A D AT L ++ I ++ L L+++ +K
Sbjct: 161 FKRHRAIYDAEATAKIFLKMIRKIFNEQCYLLSELFEFISK 201
>gi|240170995|ref|ZP_04749654.1| oligoribonuclease [Mycobacterium kansasii ATCC 12478]
Length = 215
Score = 43.2 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 8/114 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PEA 57
M + V D E G ++A D+ + A + D + DD L A
Sbjct: 1 MRDELVWIDCEMTGLNIASDKLIEIAVLVTDADLNILGDGVDVVIHADDDALSSMIDVVA 60
Query: 58 VFITG---ITPQKALRDGVVEAEFS--RRIHQFFSVPNTCIIGYNNIRFDDYYS 106
T I KA + AE I++ P T + N+I D +
Sbjct: 61 EMHTRSGLIEEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRSFI 114
>gi|254510913|ref|ZP_05122980.1| exonuclease, DNA polymerase III, epsilon subunit family
[Rhodobacteraceae bacterium KLH11]
gi|221534624|gb|EEE37612.1| exonuclease, DNA polymerase III, epsilon subunit family
[Rhodobacteraceae bacterium KLH11]
Length = 470
Score = 43.2 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
FV++D ET G D Q VRV + P +P P A + I
Sbjct: 278 FVVFDTETTGLLPHKDEIVQIGAVRVIKGRIVEGEQLDMLVDPG---IPIPAASTRVHKI 334
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN 97
A+ G + + I FS + I+ +N
Sbjct: 335 N--DAMVLGAPDIAKAGLIFHQFSR-DAVIVAHN 365
>gi|254480996|ref|ZP_05094242.1| exonuclease superfamily protein [marine gamma proteobacterium
HTCC2148]
gi|41582287|gb|AAS07901.1| oligoribonuclease [uncultured marine bacterium 463]
gi|214038791|gb|EEB79452.1| exonuclease superfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 182
Score = 43.2 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ V D E G D D + A + D +
Sbjct: 4 ASNLVWVDLEMTGLDPDEDVVIEIATIVTDSDLNTLAE 41
>gi|29346773|ref|NP_810276.1| DNA Pol III epsilon chain [Bacteroides thetaiotaomicron VPI-5482]
gi|29338670|gb|AAO76470.1| DNA Pol III Epsilon Chain [Bacteroides thetaiotaomicron VPI-5482]
Length = 277
Score = 43.2 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 47/208 (22%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + T+ P PEA
Sbjct: 23 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE--ETKTMRINPEMHI---PEASSA 77
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GI V + + + + + + G+N+ RFD F R D
Sbjct: 78 VHGI-----YDADVADCPTFKEVAKNVARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVD- 131
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----E 170
+D+ + + D F K++ L+ A
Sbjct: 132 --------------IDMTKRKFV------------DVQVIFHKMEQRTLSAAYKFYCEKS 165
Query: 171 HVNAHDAKADVYATLALVWLIREKKPKL 198
+AH A+AD AT ++ ++ P L
Sbjct: 166 LEDAHTAEADTRATYEVLKAQLDRYPDL 193
>gi|295112557|emb|CBL31194.1| hypothetical protein [Enterococcus sp. 7L76]
Length = 450
Score = 43.2 bits (101), Expect = 0.089, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLP 397
+ + +Y++P + +D + Y F+ +R + +L L+ N+ D R
Sbjct: 55 KLEIVYHRPNGYTPL-LDLKEYADFYKLDIVNRLLEMNVLEKTNTYLAMQNILLKDTR-- 111
Query: 398 ELFFRYRARNF---PHTLSEKEKQDWLEHRKKMLTRSRIEEYK-NKLQSLSGEYK---GD 450
+L F Y+A +F P++ +++E + W + +E+Y+ N+++ L+ E D
Sbjct: 112 DLLFIYKADHFGNLPYS-TKEELEQWKNFICSFFGKYTLEKYEKNRIEVLAKEKNSFLND 170
Query: 451 EGKEGLINALYE 462
+ +L +
Sbjct: 171 IEAVESLESLRD 182
>gi|289207535|ref|YP_003459601.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
gi|288943166|gb|ADC70865.1| ribonuclease T [Thioalkalivibrio sp. K90mix]
Length = 228
Score = 43.2 bits (101), Expect = 0.089, Method: Composition-based stats.
Identities = 44/211 (20%), Positives = 69/211 (32%), Gaps = 37/211 (17%)
Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYL 52
M N F V+ D ET G D Q A V R D + + T +P +
Sbjct: 14 MANRFRGFLPVVVDVETGGFDCRRHALLQVAAVFLRRDENDHLVRDRTVSLHVRPYEGSE 73
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYY 105
DP+++ + GI P LR E + R+ ++G+N FD +
Sbjct: 74 MDPKSLEVNGIDPYHPLRAAYPEDQAMGRLFSEVRREVKINHCKRAILVGHNA-HFDLGF 132
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
R + + + S D + + + G T L A
Sbjct: 133 VHTAAERCG---IKRNPFHPFSSLDTVSLAALAF--------------GQTV--LARAAD 173
Query: 166 ANGI--EHVNAHDAKADVYATLALVWLIREK 194
A G+ + AH A D T + I +
Sbjct: 174 AAGLGWDAEAAHSAAFDAEKTADIFCQIANR 204
>gi|311739312|ref|ZP_07713148.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305610|gb|EFQ81677.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 65
Score = 43.2 bits (101), Expect = 0.089, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
F + D ET G + DR + VR D + ++
Sbjct: 31 FAVIDTETTGFNKRYDRIIELTAVRADAYFNPVD 64
>gi|332293348|ref|YP_004431957.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
4H-3-7-5]
gi|332171434|gb|AEE20689.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
4H-3-7-5]
Length = 466
Score = 43.2 bits (101), Expect = 0.090, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 75/204 (36%), Gaps = 30/204 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G+ + +R + VR+ + E ++ + Y+P P +TGI
Sbjct: 13 DVETTGKGINGNRITEICAVRL-KDGEVVDKFTSLVN--PEQYIP-PFITNLTGID-DAM 67
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ D + E + RI + S + +N + FD R+ F R S+
Sbjct: 68 VADAPLFNEIADRIIEISS--GAIFVAHN-VTFDFNVLRSEFKR-----LGHSFTRKKLC 119
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
+R P S+ L +L + GI N H A+ D AT+ L
Sbjct: 120 -----TVRLSRKLIPSLF----------SYSLGNLCASIGIPLNNRHRAEGDTDATVILF 164
Query: 189 WLI--REKKPKLFEYLYDYRNKNQ 210
+ ++ K+ + R+K
Sbjct: 165 KRLLTLDEDGKVMSSFLNVRSKEA 188
>gi|294619462|ref|ZP_06698906.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291594289|gb|EFF25719.1| conserved hypothetical protein [Enterococcus faecium E1679]
Length = 450
Score = 43.2 bits (101), Expect = 0.090, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLP 397
+ + +Y++P + +D + Y F+ +R + +L L+ N+ D R
Sbjct: 55 KLEIVYHRPNGYTPL-LDLKEYADFYKLDIVNRLLEMNVLEKTNTYLAMQNILLKDTR-- 111
Query: 398 ELFFRYRARNF---PHTLSEKEKQDWLEHRKKMLTRSRIEEYK-NKLQSLSGEYK---GD 450
+L F Y+A +F P++ +++E + W + +E+Y+ N+++ L+ E D
Sbjct: 112 DLLFIYKADHFGNLPYS-TKEELEQWKNFICSFFGKYTLEKYEKNRIEVLAKEKNSFLND 170
Query: 451 EGKEGLINALYE 462
+ +L +
Sbjct: 171 IEAVESLESLRD 182
>gi|34540032|ref|NP_904511.1| exonuclease [Porphyromonas gingivalis W83]
gi|34396343|gb|AAQ65410.1| exonuclease [Porphyromonas gingivalis W83]
Length = 260
Score = 43.2 bits (101), Expect = 0.091, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 5 FVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
F++ D ET G + P +D ++ IE C+ + D P
Sbjct: 69 FLVIDTETTGLPADETQFISGVDAPAPVSVGWQLLDFRFRCIEEVV---CRLSTDEPVSP 125
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
EA + GIT A G E R+ S ++ +N+ F R +
Sbjct: 126 EAAALHGIT--DASLHGDDPHEVYARLLGAVSKAK--VLSAHNLAFHRSVLVYDMRRRGF 181
Query: 116 DS 117
D
Sbjct: 182 DP 183
>gi|227833883|ref|YP_002835590.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
700975]
gi|227454899|gb|ACP33652.1| putative oligoribonuclease [Corynebacterium aurimucosum ATCC
700975]
Length = 210
Score = 43.2 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D + A V D + ++
Sbjct: 8 NDRLVWIDLEMTGLDPKRHVIVEVAAVVTDAELNILDE 45
>gi|261856160|ref|YP_003263443.1| exonuclease RNase T and DNA polymerase III [Halothiobacillus
neapolitanus c2]
gi|261836629|gb|ACX96396.1| Exonuclease RNase T and DNA polymerase III [Halothiobacillus
neapolitanus c2]
Length = 183
Score = 43.2 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
T + + D E G D D + A + D+ +
Sbjct: 7 TENLIWIDLEMTGLDPMTDTIIEMATLVTDKHLNILAE 44
>gi|37526494|ref|NP_929838.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
gi|54036329|sp|Q7N3W0|RNT_PHOLL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|36785925|emb|CAE14977.1| ribonuclease T [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 217
Score = 43.2 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 58/194 (29%), Gaps = 38/194 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V ++ + F +P + +P A+ TGI
Sbjct: 23 DVETGGFNAKTDALLEIAAVTLEMDGEGWLTP-GESLHFHIEPFEGANLEPAALEFTGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + N II +N FD + R RN
Sbjct: 82 PLNPLRGAVSEYEALHAIFKMVRKGIKNNHCNRAIIVAHNANFDHSFVMAATERTGLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L ++ + I G ++
Sbjct: 142 PFHPFATF-----DTAALGGLVLGQTILAKACIT-----AGIP------------FDNNQ 179
Query: 174 AHDAKADVYATLAL 187
AH A D T L
Sbjct: 180 AHSALYDTDRTAEL 193
>gi|198438327|ref|XP_002132043.1| PREDICTED: similar to small fragment nuclease [Ciona
intestinalis]
Length = 205
Score = 43.2 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 17/47 (36%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
V D E G DV D + A + D I E +D+ L
Sbjct: 35 VWVDLEMTGLDVNKDHILEMACLVTDGNLNVIAQEEDLVIHQSDEVL 81
>gi|212721064|ref|NP_001131502.1| hypothetical protein LOC100192839 [Zea mays]
gi|194691708|gb|ACF79938.1| unknown [Zea mays]
Length = 249
Score = 43.2 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 39/198 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPD-PEAVFIT- 61
V D E G D+ DR + A + D + ++IE ++ + + D L + E
Sbjct: 70 LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQ-SKDCLDNMDEWCKTHH 128
Query: 62 ---GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFY 115
G+T ++ L+ + E + ++ F T ++ N++ D +F + +
Sbjct: 129 AASGLT-ERVLQSELSEHDAEAKVLDFVRKHINSGTPLLAGNSVYVD-----FLFLKKYM 182
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-PSRDDGATSFKLQDLALANGIEHVNA 174
+ + D+ +M I+W P
Sbjct: 183 PQLAAVFSH--VIVDVSSIMALC-------IRWYPKERKQTP-------------RKQKT 220
Query: 175 HDAKADVYATLALVWLIR 192
H A D+ ++A + +
Sbjct: 221 HRAMDDIKESIAELKYYK 238
>gi|188994147|ref|YP_001928399.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277]
gi|188593827|dbj|BAG32802.1| probable exonuclease [Porphyromonas gingivalis ATCC 33277]
Length = 260
Score = 43.2 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 5 FVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP 55
F++ D ET G + P +D ++ IE C+ + D P
Sbjct: 69 FLVIDTETTGLPADETQFISGVDAPAPVSVGWQLLDFRFRCIEEVV---CRLSTDEPVSP 125
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
EA + GIT A G E R+ S ++ +N+ F R +
Sbjct: 126 EAAALHGIT--DASLHGDDPHEVYARLLGAVSKAK--VLSAHNLAFHRSVLVYDMRRRGF 181
Query: 116 DS 117
D
Sbjct: 182 DP 183
>gi|121603395|ref|YP_980724.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
CJ2]
gi|120592364|gb|ABM35803.1| Exonuclease, RNase T and DNA polymerase III [Polaromonas
naphthalenivorans CJ2]
Length = 220
Score = 43.2 bits (101), Expect = 0.094, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 20/189 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + D VR+ +P L E+V + + Q
Sbjct: 46 DCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRL-SAESVRVHRLREQDV 104
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR--NFYDSYRWSWDNGN 126
+ + + ++ S P ++GY + FD + +
Sbjct: 105 AQGISADEAMMKLMYFIGSRP---LVGY-YLEFDLAMINRVLFPMLGMGLPQPK------ 154
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
++V Y + + +RD G+ + + L + +AHDA D A +A
Sbjct: 155 -----IEVSSMYYDYKFHQLPHHARDSGSIDLRFESLMKDLNLPLWSAHDALND--AIMA 207
Query: 187 LVWLIREKK 195
+ ++ ++
Sbjct: 208 ALAFLKLRQ 216
>gi|294649278|ref|ZP_06726713.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
gi|292824831|gb|EFF83599.1| exoribonuclease II [Acinetobacter haemolyticus ATCC 19194]
Length = 186
Score = 43.2 bits (101), Expect = 0.095, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M++ + D E G D D+ + A + D +
Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAE 43
>gi|262374198|ref|ZP_06067474.1| oligoribonuclease [Acinetobacter junii SH205]
gi|262310756|gb|EEY91844.1| oligoribonuclease [Acinetobacter junii SH205]
Length = 184
Score = 43.2 bits (101), Expect = 0.095, Method: Composition-based stats.
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M++ + D E G D D+ + A + D +
Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDKIIEIATIITDDNLNILAE 43
>gi|294673575|ref|YP_003574191.1| DNA polymerase III subunit epsilon [Prevotella ruminicola 23]
gi|294472509|gb|ADE81898.1| putative DNA polymerase III, epsilon subunit [Prevotella ruminicola
23]
Length = 285
Score = 43.2 bits (101), Expect = 0.096, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRV-----DRQWEKIESTEVFFCKPADDYLPDP 55
+T VI+D ET G D+ DR Q + ++V + + ++ + E KP + P
Sbjct: 5 LTKPLVIFDLETTGLDLVKDRIIQISYIKVYPDGHEERGNELVNPE----KPIE-----P 55
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+TGI+ + + + + F+ G+N+ FD F R
Sbjct: 56 MITQLTGISNDDVKDKPTFK-QLGAVLAEKFT--GCDFAGFNSNHFDIPLLAEEFLRAGV 112
Query: 116 D 116
D
Sbjct: 113 D 113
>gi|302529267|ref|ZP_07281609.1| oligoribonuclease [Streptomyces sp. AA4]
gi|302438162|gb|EFL09978.1| oligoribonuclease [Streptomyces sp. AA4]
Length = 202
Score = 43.2 bits (101), Expect = 0.096, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M +H V D E G D+ D + A + D +
Sbjct: 1 MNDHLVWIDCEMTGLDLGKDALIEIAALVTDADLNVLGE 39
>gi|68535798|ref|YP_250503.1| putative exonuclease [Corynebacterium jeikeium K411]
gi|68263397|emb|CAI36885.1| putative exonuclease [Corynebacterium jeikeium K411]
Length = 198
Score = 43.2 bits (101), Expect = 0.096, Method: Composition-based stats.
Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 27/195 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQK 67
D ET G +R + A + + + + + L P+ + +TGI+
Sbjct: 16 DLETTGLRPQEERIIEIAALHIRN-----GELQDKYTTLLNPNLSVPQEITDLTGISDGL 70
Query: 68 ALRDGV---VEAEFSRRIHQFFSVPNTCIIGY--------NNIRFDDYYSRNIFYRNFYD 116
V E + + +G+ +N+ FD + ++ R
Sbjct: 71 LADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQLK 130
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ ++ R ++ A P G ++L ++A + H H
Sbjct: 131 NSAYANRPYTPR-----LVCTAEASR---TLIPRESVGR--YRLGNVASYLKVPHRPLHR 180
Query: 177 AKADVYATLALVWLI 191
A +D AT ++ +
Sbjct: 181 AMSDALATYDVLRAL 195
>gi|312795486|ref|YP_004028408.1| Oligoribonuclease [Burkholderia rhizoxinica HKI 454]
gi|312167261|emb|CBW74264.1| Oligoribonuclease (EC 3.1.-.-) [Burkholderia rhizoxinica HKI 454]
Length = 204
Score = 43.2 bits (101), Expect = 0.097, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 46/203 (22%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV----- 58
+ + D E G DR + A V D + V +D L +A+
Sbjct: 20 NLIWLDMEMTGLLPNTDRIIEVAVVVTDSNLTVVVEGPVLAIHQSDSTL---DAMDQWNK 76
Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIF 110
G + ++ V EA+ + ++ F S C N+I D F
Sbjct: 77 NTHGRSGLIERVRASSVTEADAAAQLLAFLSQYVPAGKSPMCG---NSICQD-----RRF 128
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+ + N D+ + + P + G +
Sbjct: 129 MARWMPELEAFFHYRN--LDVSTLKELCRRWQPAVYK--------------------GFQ 166
Query: 171 HVNAHDAKADVYATLALVWLIRE 193
H A AD++ ++ + RE
Sbjct: 167 KRALHTALADIHESIDELKYYRE 189
>gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
2210633]
gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AN-5034]
gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
Peru-466]
gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ4037]
gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD
2210633]
gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
Peru-466]
gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AN-5034]
gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ4037]
gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
Length = 240
Score = 43.2 bits (101), Expect = 0.097, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 59/193 (30%), Gaps = 41/193 (21%)
Query: 3 NHFVIYDYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
N V+ D ET G + R + V E I F D
Sbjct: 10 NRIVVLDTETTGMNQEGGPHYLGHRIIEIGAV------EIINRKLTGRHFHVYIKPDREI 63
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFY 111
PEA+ + GIT + + E IHQ F ++ +N FD + F
Sbjct: 64 QPEAIQVHGITDEFLVDK--PEY---ASIHQEFLDFIKGAELVAHNA-PFDTGFMDYEFE 117
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-- 169
+ D D+ D L + + I+ P + + L L GI
Sbjct: 118 K--LDPTIGKTDDYCKVTDTLAMAKKIF---------PGKRNN-----LDVLCERYGIDN 161
Query: 170 EHVNAHDAKADVY 182
H H A D
Sbjct: 162 SHRTLHGALLDAE 174
>gi|332982461|ref|YP_004463902.1| DNA polymerase III catalytic subunit, PolC type [Mahella
australiensis 50-1 BON]
gi|332700139|gb|AEE97080.1| DNA polymerase III catalytic subunit, PolC type [Mahella
australiensis 50-1 BON]
Length = 1427
Score = 43.2 bits (101), Expect = 0.098, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 58/179 (32%), Gaps = 28/179 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + D+ + VR+ + + + F P V +TGIT
Sbjct: 419 DIETTGLNAGTDKIIEIGAVRI-KDGKYKDEFSSF---INPHVPIPPSIVNLTGIT-DDM 473
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ + E + +R F ++ +N +FD F R Y + N
Sbjct: 474 VSNAPDEGDVLQR---FMEFAGDAVLVAHNAQFD-----MGFIRQHGQKYNLKFANP--- 522
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
+LD + G +KL LA I+ N H A D +
Sbjct: 523 --VLDTLTLARQLF----------KGLKHYKLDTLAHHLHIDMDNHHRAVDDARTAAEI 569
>gi|59712936|ref|YP_205712.1| oligoribonuclease [Vibrio fischeri ES114]
gi|81310874|sp|Q5E2C2|ORN_VIBF1 RecName: Full=Oligoribonuclease
gi|59481037|gb|AAW86824.1| oligoribonuclease [Vibrio fischeri ES114]
Length = 181
Score = 43.2 bits (101), Expect = 0.098, Method: Composition-based stats.
Identities = 26/203 (12%), Positives = 49/203 (24%), Gaps = 44/203 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--------TEVFFCKPADDYLPD 54
+ + D E G D + + A + D Q + E K +
Sbjct: 6 QNLIWVDLEMTGLDPETHKIIEIASIVTDAQLNILAEGPVIAIHQPEEELAKMDNWC--- 62
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIF 110
+ E F + G N+I D R
Sbjct: 63 -TNTHTNSGLVARVQESKYDEEAAIAETIAFLEQWVPKGVSPICG-NSIGQD----RRFL 116
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
Y++ + + D+ + + P+ L A
Sbjct: 117 YKHM--PRLEEYFHY-RYVDVSTIKELARRWKPEV--------------LDGFTKAG--- 156
Query: 171 HVNAHDAKADVYATLALVWLIRE 193
H A D+ ++A + R+
Sbjct: 157 ---THLALDDIRESIAELKYYRQ 176
>gi|330802757|ref|XP_003289380.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
gi|325080536|gb|EGC34087.1| hypothetical protein DICPUDRAFT_56059 [Dictyostelium purpureum]
Length = 187
Score = 43.2 bits (101), Expect = 0.099, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D+ D + A + D + IE
Sbjct: 11 SQRIVWVDLEMTGLDITKDCILEMACIITDSELNIIEK 48
>gi|325676987|ref|ZP_08156658.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
gi|325552149|gb|EGD21840.1| DNA polymerase III subunit epsilon [Rhodococcus equi ATCC 33707]
Length = 228
Score = 43.2 bits (101), Expect = 0.099, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 58/200 (29%), Gaps = 37/200 (18%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AVFIT 61
+D ET GRD R V + + + DP A +
Sbjct: 12 FDLETTGRDPLSARIVT-GSVVT-----VGGEGH----RSRNWIV-DPGVEIPVDAAAVH 60
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI+ +A G A R I + ++ +N +D R +
Sbjct: 61 GISTAQARERGQDYASGYREIRSALTDAWAAGHVVVAFNA-AYDLTVLDAEGRRLGWPPL 119
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S + L P I D L L G+ AH+A+
Sbjct: 120 --------SGYGL--------VVDPYVIDREMDRDRRGKRTLGALCEHYGVVLAAAHEAE 163
Query: 179 ADVYATLALVWLIREKKPKL 198
+D A L ++ + P L
Sbjct: 164 SDALAAAELARILPRRFPHL 183
>gi|255690064|ref|ZP_05413739.1| exonuclease [Bacteroides finegoldii DSM 17565]
gi|260624341|gb|EEX47212.1| exonuclease [Bacteroides finegoldii DSM 17565]
Length = 259
Score = 43.2 bits (101), Expect = 0.099, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + ++ P PEA
Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE--ESKTLRINPEMHI---PEASSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 60 VHGIY-DADVADCPTFKEVAKSIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----EHV 172
+D+ + + D F K++ L+ A
Sbjct: 114 ------------IDMTKRKFV------------DVQVIFHKMEQRTLSAAYKFYCEKNLE 149
Query: 173 NAHDAKADVYATLALVW 189
+AH A+AD AT ++
Sbjct: 150 DAHTAEADTRATYEVLK 166
>gi|284042646|ref|YP_003392986.1| exonuclease RNase T and DNA polymerase III [Conexibacter woesei
DSM 14684]
gi|283946867|gb|ADB49611.1| Exonuclease RNase T and DNA polymerase III [Conexibacter woesei
DSM 14684]
Length = 259
Score = 43.2 bits (101), Expect = 0.100, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 16/86 (18%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFIT 61
+D ET G D DR A V + V D+L DP A +
Sbjct: 7 FDIETTGIDPQSDRIVT-AAVSLAGD----ARPTV-----DHDWLVDPGVEIPAGATAVH 56
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFS 87
GIT A +G AE I +
Sbjct: 57 GITTDHARAEGRASAEAVEEITAVLA 82
>gi|256965562|ref|ZP_05569733.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|305678719|ref|YP_003864138.1| TrsF [Enterococcus faecalis]
gi|256956058|gb|EEU72690.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|304324971|gb|ADM24851.1| TrsF [Enterococcus faecalis]
gi|304325013|gb|ADM24892.1| TrsF [Enterococcus faecalis]
gi|304325054|gb|ADM24932.1| TrsF [Enterococcus faecalis]
Length = 450
Score = 43.2 bits (101), Expect = 0.100, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLP 397
+ + +YN+P + +D + Y F+ +R + +L L+ N+ D R
Sbjct: 55 KLEIVYNRPNGYTPL-LDLKEYADFYKLDIVNRLLEMNVLEKTNTYLAMQNILLKDTR-- 111
Query: 398 ELFFRYRARNF---PHTLSEKEKQDWLEHRKKMLTRSRIEEYK-NKLQSLSGEYK---GD 450
+L F Y+A +F P++ +++E + W + +E+Y+ N+++ L+ E D
Sbjct: 112 DLLFIYKADHFDNLPYS-TKEELEQWKNFICSFFGKFSLEKYEKNRIEVLTKEKNSFLND 170
Query: 451 EGKEGLINALYE 462
+ +L +
Sbjct: 171 VEAVESLESLRD 182
>gi|329955851|ref|ZP_08296654.1| exonuclease [Bacteroides clarus YIT 12056]
gi|328525231|gb|EGF52281.1| exonuclease [Bacteroides clarus YIT 12056]
Length = 256
Score = 43.2 bits (101), Expect = 0.10, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 39/204 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G ++ DR + ++V + E + + EA +
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----ETKTMRINPEMHIPAEASAV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI + + D E +R I + G+N+ RFD F R D
Sbjct: 61 HGIY-DEDVADCPTFKEVARGIANDI--EGCDLAGFNSNRFDIPVLAEEFLRADVDI--- 114
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVNA 174
SR +DV + K++ L+ A G +A
Sbjct: 115 ----DMSRRKFVDVQVIFH-------------------KMEQRTLSAAYKFYCGKNLEDA 151
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A+AD AT ++ ++ P L
Sbjct: 152 HTAEADTRATYEVLMSQLDRYPDL 175
>gi|296139064|ref|YP_003646307.1| exonuclease RNase T and DNA polymerase III [Tsukamurella
paurometabola DSM 20162]
gi|296027198|gb|ADG77968.1| Exonuclease RNase T and DNA polymerase III [Tsukamurella
paurometabola DSM 20162]
Length = 198
Score = 43.2 bits (101), Expect = 0.10, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ DR + A + D +
Sbjct: 1 MDDKLVWVDCEMTGLDLTSDRLIEIAALVTDGDLNILGE 39
>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 1402
Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E I+ + F + + +T IT
Sbjct: 383 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIDRFDKF---INPHHPLSETTINLTSIT 438
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++ EA + F+ C +N++FD + R Y
Sbjct: 439 -DEMVQAADDEAVVIKEFMDFYGNDPLCG---HNVQFDVGFVDAALKRCGYPEI------ 488
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L L + + H A D AT
Sbjct: 489 ---SQPVVDTLEVSRLLHP--------EQSRHT--LDSLCRKYNVALEHHHRANQDAEAT 535
>gi|62317520|ref|YP_223373.1| exonuclease [Brucella abortus bv. 1 str. 9-941]
gi|83269503|ref|YP_418794.1| DNA polymerase III subunit epsilon:exonuclease [Brucella melitensis
biovar Abortus 2308]
gi|148557905|ref|YP_001257609.1| putative exonuclease [Brucella ovis ATCC 25840]
gi|189022776|ref|YP_001932517.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
gi|225686408|ref|YP_002734380.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Brucella melitensis ATCC 23457]
gi|254691019|ref|ZP_05154273.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 6 str. 870]
gi|254695674|ref|ZP_05157502.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 3 str.
Tulya]
gi|254698803|ref|ZP_05160631.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 2 str.
86/8/59]
gi|254705882|ref|ZP_05167710.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
M163/99/10]
gi|254711110|ref|ZP_05172921.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis B2/94]
gi|254712430|ref|ZP_05174241.1| DNA polymerase III, epsilon chain [Brucella ceti M644/93/1]
gi|254715502|ref|ZP_05177313.1| DNA polymerase III, epsilon chain [Brucella ceti M13/05/1]
gi|254732250|ref|ZP_05190828.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 4 str. 292]
gi|256015402|ref|YP_003105411.1| exonuclease, putative [Brucella microti CCM 4915]
gi|256029491|ref|ZP_05443105.1| DNA polymerase III, epsilon chain [Brucella pinnipedialis
M292/94/1]
gi|256111454|ref|ZP_05452474.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 3 str.
Ether]
gi|256157686|ref|ZP_05455604.1| DNA polymerase III, epsilon chain [Brucella ceti M490/95/1]
gi|256253341|ref|ZP_05458877.1| DNA polymerase III, epsilon chain [Brucella ceti B1/94]
gi|256256204|ref|ZP_05461740.1| DNA polymerase III, epsilon chain [Brucella abortus bv. 9 str. C68]
gi|256262453|ref|ZP_05464985.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
gi|260167417|ref|ZP_05754228.1| DNA polymerase III, epsilon chain [Brucella sp. F5/99]
gi|260544758|ref|ZP_05820579.1| DNA polymerase III [Brucella abortus NCTC 8038]
gi|260564713|ref|ZP_05835198.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
gi|261756828|ref|ZP_06000537.1| DNA polymerase III [Brucella sp. F5/99]
gi|62197713|gb|AAX76012.1| exonuclease, hypothetical [Brucella abortus bv. 1 str. 9-941]
gi|82939777|emb|CAJ12783.1| DNA polymerase III, epsilon subunit:Exonuclease [Brucella
melitensis biovar Abortus 2308]
gi|148369190|gb|ABQ62062.1| putative exonuclease [Brucella ovis ATCC 25840]
gi|189021350|gb|ACD74071.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
gi|225642513|gb|ACO02426.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Brucella melitensis ATCC 23457]
gi|255998062|gb|ACU49749.1| exonuclease, putative [Brucella microti CCM 4915]
gi|260098029|gb|EEW81903.1| DNA polymerase III [Brucella abortus NCTC 8038]
gi|260152356|gb|EEW87449.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
gi|261736812|gb|EEY24808.1| DNA polymerase III [Brucella sp. F5/99]
gi|263092188|gb|EEZ16485.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
gi|326410781|gb|ADZ67845.1| DNA polymerase III, epsilon subunit [Brucella melitensis M28]
Length = 224
Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 17 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 72
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 73 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 129
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 130 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 165
Query: 181 VYATLAL 187
Y T L
Sbjct: 166 AYLTAGL 172
>gi|323491900|ref|ZP_08097072.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
gi|323313843|gb|EGA66935.1| oligoribonuclease [Vibrio brasiliensis LMG 20546]
Length = 181
Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 40/194 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFIT 61
+ + D E G D + + A + D + + + +P ++ E T
Sbjct: 6 QNLIWIDLEMTGLDPETHKVIEIATIVTDSELNILAEGPVLAIHQPEEELQKMDEWCTTT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSRNIFYR 112
+ + E E R+ +F C N++ D R Y+
Sbjct: 66 HTGSGLVDRIRESKIDEQEAIRQTIEFLEKWVPKGKSPICG---NSVGQD----RRFLYK 118
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + + D+ + + P+ + G
Sbjct: 119 HM--PELEQYFHY-RYIDVSTLKELTRRWKPEVLD--------------------GFSKK 155
Query: 173 NAHDAKADVYATLA 186
+H A D+ ++A
Sbjct: 156 GSHLALDDIRESIA 169
>gi|134094115|ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans]
gi|133738018|emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans]
Length = 198
Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ V D E G D D + A V D + I VF +D+ L
Sbjct: 24 NLVWLDMEMTGLDCDNDCIIEIAVVVTDAELNIIGEGPVFAIHQSDETL 72
>gi|319941454|ref|ZP_08015782.1| exonuclease RNase T and DNA polymerase III [Sutterella
wadsworthensis 3_1_45B]
gi|319805074|gb|EFW01904.1| exonuclease RNase T and DNA polymerase III [Sutterella
wadsworthensis 3_1_45B]
Length = 194
Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP 47
++ + D E G ++R + A + D+ + V +P
Sbjct: 19 DNLIWIDMEMTGLQPEVNRVLEVAAIITDKNLNILHEGPVVAIHQP 64
>gi|146300234|ref|YP_001194825.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
UW101]
gi|146154652|gb|ABQ05506.1| DNA polymerase III, epsilon subunit [Flavobacterium johnsoniae
UW101]
Length = 209
Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 46/216 (21%), Positives = 67/216 (31%), Gaps = 46/216 (21%)
Query: 5 FVIYDYETFGRDVALDRP-------AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
FV+ D ET G D DR Q + V +E D Y D
Sbjct: 25 FVVLDTETTGFDYENDRILCIGALALQNGVISVQDSFEIYLH--------QDHY--DKST 74
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I GI + L E E ++ F + II ++ + FD RN
Sbjct: 75 AQIHGIL-KDLLVKRPTELEALQQFLDFLGD--SIIIAHHTV-FDVTMINKALERNGLPQ 130
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
N D Y + IQ + + L DLA I + H A
Sbjct: 131 LT------NKTLD------TAYLYKKTLIQSHLFER-KDHYTLDDLADKFDISKKDRHTA 177
Query: 178 KADVYAT-LALVWLIREKKPKLFEYLYDYRNKNQLR 212
D Y T +A + ++++ R K +
Sbjct: 178 LGDAYITAIAFLKIVKK-----------LREKKAVS 202
>gi|21355135|ref|NP_651184.1| CG10214 [Drosophila melanogaster]
gi|11133808|sp|Q9VCI0|ORN_DROME RecName: Full=Probable oligoribonuclease
gi|7301049|gb|AAF56185.1| CG10214 [Drosophila melanogaster]
gi|16769160|gb|AAL28799.1| LD18757p [Drosophila melanogaster]
gi|220942706|gb|ACL83896.1| CG10214-PA [synthetic construct]
gi|220952944|gb|ACL89015.1| CG10214-PA [synthetic construct]
Length = 211
Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 14/68 (20%)
Query: 1 MTNH------FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCK 46
M++ V D E G D+ D+ + A + D+ I + +
Sbjct: 28 MSSTCGLDTDIVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDS 87
Query: 47 PADDYLPD 54
+ +
Sbjct: 88 MNEWCMKH 95
>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
Length = 1441
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 38/226 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGIT 64
+++D ET G + DR + V++ + + ++S K + P PE + +TGI+
Sbjct: 426 IVFDVETTGLNFRTDRLTEIGAVKL-KNLQVVDSFNT---KVNPEK-PIPEKITELTGIS 480
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
++D EAE R +F I +N R+D + R D + ++W
Sbjct: 481 -DADVKDAPHEAEALRMFMEFCGDKPVLIA--HNARYDTNMINQVCKRQNID-FDYTW-- 534
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA---LANGIEHVNAH-DAKAD 180
+D + + P+ G KL +A +H A DA
Sbjct: 535 -------VDTLVMCQSMLPEM--------GRH--KLNLVAKQLKLGKFDHHRASDDALML 577
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHV 226
+ L ++ + F+ L + N+L I+ + + H+
Sbjct: 578 AKIYIELAGRLKND--RGFKSLNEL---NRLVDEIETKKLKSYHHI 618
>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 1410
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 30/186 (16%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ FV++D ET G D + V++ + + +++ E F P + FIT
Sbjct: 397 DSFVVFDIETTGLSSINDSIIEIGAVKI-KDCQIVDTFETF-VNPQIHI-----SNFITK 449
Query: 63 IT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+T + + F +T + +N FD F + +
Sbjct: 450 LTGITDDMVKRYPPIDEVLPKFLEFIKGSTLVA--HNANFD-----VTFIKTKAKNLGIE 502
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
DN D L++ R +Y + ++KL +A G+ N H A D
Sbjct: 503 VDNPV--LDTLELSRHMY-------------ENLKNYKLDTVAQHLGVSLENHHRAVDDA 547
Query: 182 YATLAL 187
AT +
Sbjct: 548 RATAEI 553
>gi|260822769|ref|XP_002606774.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae]
gi|229292118|gb|EEN62784.1| hypothetical protein BRAFLDRAFT_59133 [Branchiostoma floridae]
Length = 180
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
M+ V D E G D+ + A + D + A D + P+AV
Sbjct: 1 MSRRMVWVDLEMTGLDLDSCHIIEMACLITDDDLNVVAE--------APDLVIHQPDAVM 52
Query: 60 IT------------GITPQKALRDGVV---EAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
T G+T + + E E + Q ++ P C + N++ D
Sbjct: 53 DTMNDWCKEHHGKSGLTEAVRRSELSLQAAEYEMLSFVRQ-YTPPGVCPLAGNSVHVDKK 111
Query: 105 YS 106
+
Sbjct: 112 FL 113
>gi|195573238|ref|XP_002104602.1| GD18354 [Drosophila simulans]
gi|194200529|gb|EDX14105.1| GD18354 [Drosophila simulans]
Length = 208
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 14/66 (21%)
Query: 1 MTNH------FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCK 46
M++ V D E G D+ D+ + A + D+ I + +
Sbjct: 25 MSSTCGSDTDIVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDS 84
Query: 47 PADDYL 52
+ +
Sbjct: 85 MNEWCM 90
>gi|195331405|ref|XP_002032393.1| GM23540 [Drosophila sechellia]
gi|194121336|gb|EDW43379.1| GM23540 [Drosophila sechellia]
Length = 184
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 14/66 (21%)
Query: 1 MTNH------FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCK 46
M++ V D E G D+ D+ + A + D+ I + +
Sbjct: 1 MSSTCGSDTDIVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGACFAINHPQEVYDS 60
Query: 47 PADDYL 52
+ +
Sbjct: 61 MNEWCM 66
>gi|326470961|gb|EGD94970.1| RNA exonuclease Rex2 [Trichophyton tonsurans CBS 112818]
gi|326482205|gb|EGE06215.1| RNA exonuclease Rex2 [Trichophyton equinum CBS 127.97]
Length = 188
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
++ V D E G D A DR Q D Q +E
Sbjct: 7 SDPLVWIDCEMTGLDPANDRILQICCYITDAQLNLLE 43
>gi|78065664|ref|YP_368433.1| oligoribonuclease [Burkholderia sp. 383]
gi|123569006|sp|Q39IC7|ORN_BURS3 RecName: Full=Oligoribonuclease
gi|77966409|gb|ABB07789.1| Exonuclease [Burkholderia sp. 383]
Length = 206
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 58/209 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G D DR + A V + + VF +D+ L A
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETL----AKMDDWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EAE + ++ F + P + N+I D
Sbjct: 75 KSTHGRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPE 134
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
+ R YRN D+ + + P +
Sbjct: 135 FERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIRE 193
G + H A AD++ ++ + RE
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRE 188
>gi|330815929|ref|YP_004359634.1| oligoribonuclease [Burkholderia gladioli BSR3]
gi|327368322|gb|AEA59678.1| oligoribonuclease [Burkholderia gladioli BSR3]
Length = 202
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFIT 61
+ V D E G + DR + A V + +K V +D+ L D
Sbjct: 19 NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETLARMDAWNQSTH 78
Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV 88
G + + V EAE + RI F +
Sbjct: 79 GRSGLIDRVRASTVSEAEAAARIQAFLAQ 107
>gi|315179445|gb|ADT86359.1| DNA polymerase III, epsilon chain [Vibrio furnissii NCTC 11218]
Length = 224
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 21/196 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D V + Q I E + DP+ V + I PQ
Sbjct: 38 DIETSGLDAEHDHIVSIGWVPIVNQ--VIRLAEARYFLITPSGQDDPQQVVLHHIMPQM- 94
Query: 69 LRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
R G+ ++ I F+ ++ + ++ + + + ++ + W
Sbjct: 95 QRQGIP---LAQAIELLFTQLKGKVLLAHGSV-VERQFIHHFMQQHGWPDLPIVW----- 145
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
D L + +A ++P P + ++L + + AH A +D AT
Sbjct: 146 -LDTLKIEQAYAQYAP--YNTPHSNAND--WRLSTVRKRYHLPAYQAHHALSDAIAT--- 197
Query: 188 VWLIREKKPKLFEYLY 203
L ++ +LF Y
Sbjct: 198 AELYLAQQNRLFAKAY 213
>gi|146284212|ref|YP_001174365.1| exonuclease [Pseudomonas stutzeri A1501]
gi|145572417|gb|ABP81523.1| exonuclease [Pseudomonas stutzeri A1501]
gi|327482571|gb|AEA85881.1| exonuclease [Pseudomonas stutzeri DSM 4166]
Length = 235
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 24/190 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + D V ++ I+ ++ F C + E+V I GI P +
Sbjct: 44 DLETTGLHLKRDLVIAIGAVVIEDG--AIDYSQQFECTLCRQVKVN-ESVLIHGIAPSE- 99
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
L +G+ AE +F G + F + + + R + +S +N
Sbjct: 100 LANGLPPAEALLSFMEF-------AAGSIVLAFHAPFDQRMLGRALKNELGYSLENS--- 149
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
LDV P+ + S L I H+A AD AT +
Sbjct: 150 --FLDVADLAPMLFPEAMI------HRGS--LDHWLDYFNIHIPQRHNASADAMATAEIA 199
Query: 189 WLIREKKPKL 198
++ + ++
Sbjct: 200 LILLNRAQRI 209
>gi|254517741|ref|ZP_05129797.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
sp. 7_2_43FAA]
gi|226911490|gb|EEH96691.1| DNA polymerase III epsilon subunit family exonuclease [Clostridium
sp. 7_2_43FAA]
Length = 188
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 62/186 (33%), Gaps = 31/186 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-DYLPDPEAVF 59
+ N ++ +D ET G D+ + V + + + + + A
Sbjct: 24 LKNRYIAFDVETTGLSPINDKIIEVGAV-----LFENGEIIKKYSYLVNLEVVIPASATA 78
Query: 60 ITGIT---PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ IT Q A ++ V AE + + T I +N FD + R YD
Sbjct: 79 VNHITNEMIQDATKEDTVYAELVKFLDDAL-KEQTVICAHNA-TFDMKFISETLMRLGYD 136
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
D L + R ++ G+ +D AT F+L + +H
Sbjct: 137 GKIH-------YVDTLSLSRNLF----KGLHNYKQDTVATHFEL---------VNFQSHR 176
Query: 177 AKADVY 182
A +D
Sbjct: 177 AVSDAE 182
>gi|89075319|ref|ZP_01161741.1| oligoribonuclease [Photobacterium sp. SKA34]
gi|90581256|ref|ZP_01237053.1| oligoribonuclease [Vibrio angustum S14]
gi|89048868|gb|EAR54437.1| oligoribonuclease [Photobacterium sp. SKA34]
gi|90437495|gb|EAS62689.1| oligoribonuclease [Vibrio angustum S14]
Length = 181
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 56/208 (26%), Gaps = 54/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
+ + D E G D + + A + D Q + V + PEA
Sbjct: 6 KNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAEGPVL-------AIHQPEAELDKM 58
Query: 60 --------ITGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYY 105
++ + V E + + F C N+I D
Sbjct: 59 DDWCTNTHTNSGLVERIRKSTVTEQQAVAQTIAFLEQWVPKGASPICG---NSIGQD--- 112
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
R Y++ + + D+ + + P+ +
Sbjct: 113 -RRFLYKHM--PELEQYFHY-RYLDVSTLKELTRRWKPELLD------------------ 150
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIRE 193
G+ +H A D+ ++ + RE
Sbjct: 151 --GLNKKGSHLALDDIRDSIDELRYYRE 176
>gi|331245678|ref|XP_003335475.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314465|gb|EFP91056.1| hypothetical protein PGTG_17328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 200
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
H V D E G DV +D+ + A + D+ ++++
Sbjct: 13 KHLVWIDCEMTGLDVTVDQIIEIACIITDKDLKELDD 49
>gi|270261613|ref|ZP_06189886.1| ribonuclease T [Serratia odorifera 4Rx13]
gi|270045097|gb|EFA18188.1| ribonuclease T [Serratia odorifera 4Rx13]
Length = 226
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + ++ + T F +P + PEA+ GI
Sbjct: 34 DIETAGFNAKTDALLEIAAVTLKMDEEGWLQQ-DETLHFHVEPFEGANLQPEALAFNGID 92
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 93 PHNPLRGAVSEYDALHAIFKAVRKGIKDRGCNRAIIVAHNANFDHSFLMAAAERASLKRN 152
Query: 114 FYDSYRW 120
+ +
Sbjct: 153 PFHPFAT 159
>gi|309790215|ref|ZP_07684787.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
gi|308227800|gb|EFO81456.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
Length = 935
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 56/184 (30%), Gaps = 40/184 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGI 63
FV D ET G +D +FA V+ + F + P P + +TGI
Sbjct: 6 FVALDVETTGLQAGIDEIIEFAAVK----FRD-GEILERFSQLIAPRQPLPLKITRLTGI 60
Query: 64 TPQKALRDGVVEAEFSR---RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T Q F+ +I F ++G+ +I FD R
Sbjct: 61 TAQDLADA----PHFNDVGGKIAGFIKSYP--LVGH-SINFDLGMLRA------------ 101
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N + D P +KL +A GI H + H A D
Sbjct: 102 --QGMNFTQPVYDTFDLATILMPQI----------AVYKLGAIADRLGIPHPDDHRALND 149
Query: 181 VYAT 184
T
Sbjct: 150 AEVT 153
>gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152]
gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152]
Length = 598
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 56/191 (29%), Gaps = 37/191 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV+ D ET G D + V+V E + P V +TG
Sbjct: 25 TTFVVVDLETTGTSPEGDAITEIGAVKVRGG-EVLGEFATL---VNPGRAIPPAVVQVTG 80
Query: 63 ITPQKALRDGVVEA------EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT +EA EF+ ++ +N RFD + R R
Sbjct: 81 ITTALVYAAPRIEAVLPGFLEFAA---------GAVLVAHNA-RFDTAFLRAAAARCALP 130
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
W V+ + D A S +L LA G H
Sbjct: 131 ------------WPDAPVLCTVKLARR-----VLGRDEAPSVRLASLARLLGASTQPTHR 173
Query: 177 AKADVYATLAL 187
A D AT+ +
Sbjct: 174 ALDDARATVDV 184
>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
goodfellowii F0264]
gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
goodfellowii F0264]
Length = 1438
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 28/183 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G D D+ + +++ + E I+ VF P D +P+ E +T IT
Sbjct: 412 YVVFDIETTGLDPYKDKIIEIGAIKLKGK-EIIDEFSVFI-NPEID-IPE-EITALTNIT 467
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
VE + + F T + +N +FD F + +
Sbjct: 468 NDMVKDAEKVETVLPKFL--EFCKDTTVVA--HNAKFD-----VGFINQKAKNLGLEYSP 518
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P+ F L+ +A + N H A D AT
Sbjct: 519 S-----VIDTLHWARILLPE----------QKRFGLKYIANYFNVVLDNHHRAVDDAKAT 563
Query: 185 LAL 187
+
Sbjct: 564 AEI 566
>gi|226227968|ref|YP_002762074.1| exonuclease [Gemmatimonas aurantiaca T-27]
gi|226091159|dbj|BAH39604.1| exonuclease [Gemmatimonas aurantiaca T-27]
Length = 323
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 45/194 (23%), Positives = 58/194 (29%), Gaps = 42/194 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFITG 62
D ET G D A D +F V D V+ P Y DP EA ITG
Sbjct: 53 DVETTGLDTARDVIIEFGAVPFDFD----GEGRVYTVHPPLSYFEDPGRPIPAEASAITG 108
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + +A + Q ++ +N FD R + R W
Sbjct: 109 ITDDDVRGKRIDDAAVLAALDQ------AVLVIAHNAGFD----RRMLERRLPAFAAKHW 158
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S+ + W G+ S KL L H A D
Sbjct: 159 A--CSQ---------------QEVPWVRF--GSRSQKLDYLLYRIARAFHTGHRAADDCL 199
Query: 183 ATLALVWLIREKKP 196
ATL L+ P
Sbjct: 200 ATLH---LLASAHP 210
>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
Length = 246
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 39/179 (21%), Positives = 55/179 (30%), Gaps = 31/179 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G A DR + V + F+ P D D A+ + GIT +
Sbjct: 10 DTETTGLSAATGDRLIEIGCVEL-MNRRLTGRHLHFYVNPERDI--DEGAIAVHGITVEF 66
Query: 68 ALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
F+ ++ + F II +N FD + F +R G
Sbjct: 67 LADK----PRFAEVVNDIREFIQDAELII--HNAPFDLGFLDMEFQLLGLPPFR--QHAG 118
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVY 182
N ++D +R P S L L GI H H A D
Sbjct: 119 N----VIDTLREARQMFPG---------KRNS--LDALCDRLGISNAHRTLHGALLDAE 162
>gi|23500370|ref|NP_699810.1| exonuclease [Brucella suis 1330]
gi|161620685|ref|YP_001594571.1| exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
23365]
gi|254702995|ref|ZP_05164823.1| exonuclease, RNase T and DNA polymerase III [Brucella suis bv. 3
str. 686]
gi|260568091|ref|ZP_05838560.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
gi|23463988|gb|AAN33815.1| exonuclease, putative [Brucella suis 1330]
gi|161337496|gb|ABX63800.1| Exonuclease, RNase T and DNA polymerase III [Brucella canis ATCC
23365]
gi|260154756|gb|EEW89837.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
Length = 224
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 17 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 72
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 73 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 129
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 130 MDGARRLW------------RGD------------STKLDHCLAKIGLARMGHRHGALED 165
Query: 181 VYATLAL 187
Y T L
Sbjct: 166 AYLTAGL 172
>gi|308048230|ref|YP_003911796.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
DSM 9799]
gi|307630420|gb|ADN74722.1| Exonuclease RNase T and DNA polymerase III [Ferrimonas balearica
DSM 9799]
Length = 181
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ + D E G D + + A + D + +
Sbjct: 5 ASNLIWIDLEMTGLDPEQNTIIEIATIVTDSELNVLAE 42
>gi|307544322|ref|YP_003896801.1| oligoribonuclease [Halomonas elongata DSM 2581]
gi|307216346|emb|CBV41616.1| oligoribonuclease [Halomonas elongata DSM 2581]
Length = 197
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
V D E G D +R + A + D + V + P+A+
Sbjct: 15 LVWIDLEMTGLDPERERIIEVATLITDADLNVVAEGPVL-------AVHQPDALL 62
>gi|256959325|ref|ZP_05563496.1| transfer complex protein TraF [Enterococcus faecalis DS5]
gi|269124258|ref|YP_003305368.1| AM24 [Enterococcus faecalis]
gi|256949821|gb|EEU66453.1| transfer complex protein TraF [Enterococcus faecalis DS5]
gi|267822522|gb|ACY79550.1| AM24 [Enterococcus faecalis]
Length = 450
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFADV--DRQIMDRILRTAPEQLSTLNLPFSDRRLP 397
+ + +Y++P + ++ + Y F+ +R + +L L+ N+ D R
Sbjct: 55 KLEIVYHRPNGYTPL-LELKEYADFYKLDIVNRLLEMNVLEKTNTYLAMQNILLKDTR-- 111
Query: 398 ELFFRYRARNF---PHTLSEKEKQDWLEHRKKMLTRSRIEEYK-NKLQSLSGEYK---GD 450
+L F Y+A +F P++ +++E + W + +E+Y+ N+++ L+ E D
Sbjct: 112 DLLFIYKADHFGNLPYS-TKEELEQWKNFICSFFGKYTLEKYEKNRIEVLAKEKNSFLND 170
Query: 451 EGKEGLINALYE 462
+ +L +
Sbjct: 171 IEAVESLESLRD 182
>gi|205373870|ref|ZP_03226672.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Bacillus coahuilensis m4-4]
Length = 194
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 34/183 (18%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
T+ +V+ D ET G DR Q + ++ E +E F + +P +FI
Sbjct: 3 THRYVVVDLETTGNSPKRGDRIIQLSACLIEHG-EIVEQFTSFLN--PNKTIP----IFI 55
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT Q + D + + ++ + + + +N + FD + + + +
Sbjct: 56 EELTGIT-QPMVDDAPNFEQIAPKLISMLND--SVFVAHN-VTFDLSFLQ----WELHAA 107
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
++ +LD + I +P+ + S+KL DL+ + H H A
Sbjct: 108 GYKTFQGP-----ILDTVELA------KICFPTSN----SYKLGDLSEKFNLLHERPHQA 152
Query: 178 KAD 180
+D
Sbjct: 153 DSD 155
>gi|297195480|ref|ZP_06912878.1| DNA polymerase III subunit epsilon [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152819|gb|EFH32011.1| DNA polymerase III subunit epsilon [Streptomyces
pristinaespiralis ATCC 25486]
Length = 241
Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A V D + P A+ + G+T
Sbjct: 12 FDTETTGVDVEEDRIVSAAVVVQDS---PGGRPRITRWLVNPGVPVPPGAIEVHGLTDDH 68
Query: 68 ALRDGVVEAEFSRRIHQFFS 87
R+G A I + +
Sbjct: 69 LQRNGRWPAPVMEEIARSLA 88
>gi|319901725|ref|YP_004161453.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
P 36-108]
gi|319416756|gb|ADV43867.1| Exonuclease RNase T and DNA polymerase III [Bacteroides helcogenes
P 36-108]
Length = 256
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N V +D ET G ++ DR + ++V + E + + EA +
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNE----EAKTMRINPEMHIPAEASAV 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
GI + + E +R I + + G+N+ RFD F R D
Sbjct: 61 HGIY-DEDVAKCPTFKEVARNIANDI--EGSDLAGFNSNRFDIPVLAEEFLRAGVD 113
>gi|313673170|ref|YP_004051281.1| DNA polymerase iii, epsilon subunit [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939926|gb|ADR19118.1| DNA polymerase III, epsilon subunit [Calditerrivibrio nitroreducens
DSM 19672]
Length = 226
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 34/187 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F + D ET G D+ + A V++ + ++ I+ VF DPE++ GIT
Sbjct: 44 FCVVDTETTGLDINTAKIINLAAVKI-KGFKIIDYYNVF---INPGKSIDPESIKWHGIT 99
Query: 65 PQKALRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ V EF + I + + I+G+ +I+FD + +++ S
Sbjct: 100 DEMVKDKPFVVEVMPEFVKFIRK------SVIVGH-HIKFDVDMIS----KELMETFGCS 148
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
LD M IY GI D F L NG H A D
Sbjct: 149 LKQKC-----LDTMF-IYTR---GIA-KKNDHVGLDFLLDLYKVRCNG-----RHTALGD 193
Query: 181 VYATLAL 187
AT +
Sbjct: 194 AMATAEV 200
>gi|74316107|ref|YP_313847.1| exonuclease [Thiobacillus denitrificans ATCC 25259]
gi|74055602|gb|AAZ96042.1| Exonuclease [Thiobacillus denitrificans ATCC 25259]
Length = 233
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 64/189 (33%), Gaps = 29/189 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D DR V V R ++ + D + + + I GI A
Sbjct: 46 DVETSGLDPRRDRLIAIGAVAVSRGKVQLGDSLEIV--LQQDTVSEKGNILIHGIG-GTA 102
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
R GV A+ ++ ++ FD R + +W
Sbjct: 103 QRAGVPPADALLAFLEYLGKDPLVAF---HVAFDAPMIRRAMKAFLGLDFSHAWA----- 154
Query: 129 WDLLDVMRAIY---AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATL 185
DL V A+Y A + DD + FK+ + A H+A AD +T
Sbjct: 155 -DLAYVAPALYPRLARRRRSL-----DDWMSEFKIGNYAR---------HNALADALSTA 199
Query: 186 ALVWLIREK 194
L+ +R+
Sbjct: 200 QLLLALRKA 208
>gi|328881521|emb|CCA54760.1| DNA polymerase III epsilon subunit [Streptomyces venezuelae ATCC
10712]
Length = 330
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 56/177 (31%), Gaps = 35/177 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D Q +E P D P V+I G+T
Sbjct: 25 DVETTGL-ARDDRIVSAAVYRLDAQGN-VEDHWYTLVNPERD----PGPVWIHGLTTDVL 78
Query: 69 LRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ AEF+ R+ ++ +N + FD +
Sbjct: 79 AGAPLFPEIAAEFAARLD------GRVLVAHNAM-FDWQM------------IAREYARA 119
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S + + I + P+ KL+ LA G+ AH+A D
Sbjct: 120 ESAAPVRQRLCTIALAKELSLPLPNH-------KLESLAAHFGVVQQRAHNALDDAR 169
>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
Length = 1443
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 29/192 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++++D ET G D + A V++ + + I++ E F + + +T I
Sbjct: 428 TYIVFDVETTGFSNVYDTIIELAAVKI-KNGQVIDTFERFS---NPHRKLTAKIIELTHI 483
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T V E S I +F ++ +N FD + + Y+N R
Sbjct: 484 TDDML----VNAPELSDVIREFHDFIGDGVVVAHNAAFDLGFL-YVAYKNAGIEVRHPG- 537
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D + +P G S L+ L IE H A D A
Sbjct: 538 --------IDTVELSRLVNP----------GQKSHNLKTLTKKYNIELTQHHRAIYDTEA 579
Query: 184 TLAL-VWLIREK 194
T L + L+++
Sbjct: 580 TGELFLHLLKQA 591
>gi|258652005|ref|YP_003201161.1| exonuclease RNase T and DNA polymerase III [Nakamurella
multipartita DSM 44233]
gi|258555230|gb|ACV78172.1| Exonuclease RNase T and DNA polymerase III [Nakamurella
multipartita DSM 44233]
Length = 212
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D +
Sbjct: 1 MNDRLVWVDCEMTGLDLGTDKLIEIAALVTDSDLNILGE 39
>gi|256043519|ref|ZP_05446446.1| DNA polymerase III, epsilon chain [Brucella melitensis bv. 1 str.
Rev.1]
Length = 224
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 17 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 72
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 73 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 129
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 130 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 165
Query: 181 VYATLAL 187
Y T L
Sbjct: 166 AYLTAGL 172
>gi|261339587|ref|ZP_05967445.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
gi|288318408|gb|EFC57346.1| ribonuclease T [Enterobacter cancerogenus ATCC 35316]
Length = 216
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 42/205 (20%), Positives = 63/205 (30%), Gaps = 38/205 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLTP-DTTLHFHVEPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF---SVPNTC---IIGYNNIRFDDYYS-----RNIFYRN 113
P+ LR V E + I + N C I+ +N FD ++ R RN
Sbjct: 82 PKNPLRGAVSEYDALHAIFKMVRKGMKDNDCSRAIMVAHNATFDHSFTMAAAERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACITAGIEFDGT-----------------Q 179
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D T L I + +L
Sbjct: 180 AHSALYDTERTAELFCEIVNRWKRL 204
>gi|320094495|ref|ZP_08026269.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
str. F0338]
gi|319978573|gb|EFW10142.1| DNA polymerase III subunit epsilon [Actinomyces sp. oral taxon 178
str. F0338]
Length = 238
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 69/202 (34%), Gaps = 28/202 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET G DR A V + AD + PE A + GIT +
Sbjct: 11 FDTETTGTSPFKDRLVTAALV-----LRVEGRDDQVATWLADPGVEIPEQASAVHGITTE 65
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYN----NIRFDDYYSRNIFYRNFYDSYRWSW 122
A G E + + G+ N +D R+ ++
Sbjct: 66 YAREHGRPVEEVLEEVAGCLTE--HWFRGFPVVAFNASYDITLVDRELSRHGLATFA--- 120
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGI--QWPSRDDGATSFKLQDLALANGIEHV-NAHDAKA 179
R D ++ P + + G + L D+A G+E +AH A+
Sbjct: 121 ----ERLDGEPML----VVDPLVLDRKLDRFRKGKKT--LTDMAPVYGVEASPDAHTAEV 170
Query: 180 DVYATLALVWLIREKKPKLFEY 201
DV TL ++ I K P+L ++
Sbjct: 171 DVAMTLNVLAGIARKFPELEDH 192
>gi|225022753|ref|ZP_03711945.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
ATCC 33806]
gi|224944474|gb|EEG25683.1| hypothetical protein CORMATOL_02798 [Corynebacterium matruchotii
ATCC 33806]
Length = 232
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 45/223 (20%), Positives = 68/223 (30%), Gaps = 49/223 (21%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET + R A V +D + AD +P PE A + GIT +
Sbjct: 18 FDLETTSANPFEARIVTSALVHIDSGG---AHPQEL---LADPGVPIPEAATKVHGITTE 71
Query: 67 KALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
A G AE I + ++ T I+ N +D + +
Sbjct: 72 YAREHGRPHADVLAETIATIKKAWADGYTLIV--YNASYDLTVL-----HSLEPGFL--- 121
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + Y D + P R T L L + NAH+A +D
Sbjct: 122 --------ITGPVYDPYVM--DKLLDPYRRGKRT---LTALCEEYQVRLENAHEATSDAL 168
Query: 183 ATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
A I K+ K + I Q M L+
Sbjct: 169 A----AARIAWKQ-----------AKKRFASQISPQTMEQLME 196
>gi|322691183|ref|YP_004220753.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456039|dbj|BAJ66661.1| hypothetical protein BLLJ_0994 [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 185
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D ET G D D + + + ++
Sbjct: 13 LLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDD 47
>gi|213692117|ref|YP_002322703.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|213523578|gb|ACJ52325.1| Exonuclease, RNase T and DNA polymerase III [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|320458233|dbj|BAJ68854.1| hypothetical protein BLIJ_1267 [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 185
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D ET G D D + + + ++
Sbjct: 13 LLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDD 47
>gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK]
gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK]
Length = 617
Score = 42.9 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 62/194 (31%), Gaps = 40/194 (20%)
Query: 3 NHFVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
FV+ D ET G + DR + V+V E + P+ V
Sbjct: 20 TTFVVVDLETTGGRASGDRHDAITEIGAVKVRGG-EVLGEFATL---VDPGRAIPPQIVA 75
Query: 60 ITGITPQKALRDGVVEA------EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+TGIT +E+ EF R ++ +N FD + R RN
Sbjct: 76 LTGITSAMVYDAPRIESVLPSFLEFCR---------GAVLVAHNA-GFDMGFLRAAAERN 125
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
W V+ + A + + D A S KL LA G
Sbjct: 126 QVP------------WPKPPVLCTV-ALARRVLT----RDEAPSVKLSALARLFGASTTP 168
Query: 174 AHDAKADVYATLAL 187
H A D AT+ +
Sbjct: 169 THRALDDARATVDV 182
>gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans
CB1190]
gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans
CB1190]
Length = 586
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 25/191 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G A + V+V ++ P +P P V +TGI
Sbjct: 30 TFVVLDLETTGGSSANHSITEIGAVKVRGG--EVLGELATLVDPGTG-VP-PGVVALTGI 85
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T A+ G ++ + ++ +N FD + R R+
Sbjct: 86 T--TAMVTGAP--RLAQVLPTLLEFMGGAVLVAHNAPFDAGFLRAACERH---------- 131
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ RW + A S +L LA G H A AD A
Sbjct: 132 --DRRWPRPPQLCTARLAR-----AVLSRAEAPSVRLGALARLFGTATQPTHRALADARA 184
Query: 184 TLALVWLIREK 194
T+ ++ + E+
Sbjct: 185 TVEVLHRLLER 195
>gi|315122041|ref|YP_004062530.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495443|gb|ADR52042.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 244
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + V + + K T F P + +PEA+ + GIT
Sbjct: 9 IIFDIETTGLDKKNDRIIEIGAVEL-LDYSKTGRTFQVFLSPDGKKV-NPEALKLHGITD 66
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ A F FF+ N I +N +FD + R D
Sbjct: 67 EFLRDKPFFSAIFPEFW-DFFNDKNAEWIAHNA-KFDVGFINAELQRINKDPL 117
>gi|144900310|emb|CAM77174.1| DNA polymerase III, epsilon subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 459
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 46/198 (23%), Positives = 64/198 (32%), Gaps = 44/198 (22%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AVFITG 62
D ET G D A D VR + D L +P A I G
Sbjct: 261 DTETTGLDAARDAIVSVGAVRC--------HGSRIYRAAMLDLLVNPGRRIPARATAIHG 312
Query: 63 ITPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
I +++ G + S I ++G+ I FD R+ R D
Sbjct: 313 I--DESMVAGKPDLAASLPEIAAIMDK--AVVVGH-QIGFDLALLRHGTERLGLD----- 362
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W LD++ A +PD + G ++ D A G+ H A D
Sbjct: 363 WTPPPR----LDILLLSAALAPD-------ESGH---EIDDQAARMGVNISGRHTALGDA 408
Query: 182 YATLAL-VWLIREKKPKL 198
T L V LI P+L
Sbjct: 409 LVTAELWVRLI----PQL 422
>gi|28493373|ref|NP_787534.1| oligoribonuclease [Tropheryma whipplei str. Twist]
gi|81839131|sp|Q83GA7|ORN_TROWT RecName: Full=Oligoribonuclease
gi|28476414|gb|AAO44503.1| oligoribonuclease [Tropheryma whipplei str. Twist]
Length = 184
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+H V D E G + D + A V D+ ++ P+ + L
Sbjct: 7 PSHLVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEAL 57
>gi|329940244|ref|ZP_08289526.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
gi|329301070|gb|EGG44966.1| DNA exonuclease [Streptomyces griseoaurantiacus M045]
Length = 251
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET G D R A + V AD + PE A+ + GIT +
Sbjct: 11 FDLETTGTDPYEARIVTGAVIEVRD-----GEPLGHRQWLADPGVEIPEDAIAVHGITNE 65
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+A +G + I + + ++ YN FD R+ S
Sbjct: 66 RATAEGTPPDRVAESIAEVLTGYWRAGVPVVAYNA-AFDLTLLGAELRRHGLPSL 119
>gi|300776313|ref|ZP_07086171.1| exonuclease [Chryseobacterium gleum ATCC 35910]
gi|300501823|gb|EFK32963.1| exonuclease [Chryseobacterium gleum ATCC 35910]
Length = 254
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 33/186 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
I+D ET G ++ DR + ++V+ S E + + +P P+ I GI
Sbjct: 9 LCIFDLETTGTNIGKDRIVEICILKVNPD----ASRESKTWRVNPE-MPIPKECSEIHGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ ++D + + +I + S + + G+N+ RFD R D
Sbjct: 64 Y-DEDVKDAPTFRDIAAKIMEMIS--GSDLGGFNSNRFDVPLLAEELLRVGMD------- 113
Query: 124 NGNSRWDL--LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+DL ++ A F P A F G NAH A+ADV
Sbjct: 114 -----FDLNKFRLVDAQTIFHKKE---PRNLGAAYQFYC-------GKTLENAHSAEADV 158
Query: 182 YATLAL 187
AT +
Sbjct: 159 MATFEV 164
>gi|293349752|ref|XP_002727236.1| PREDICTED: rCG22278-like isoform 2 [Rattus norvegicus]
Length = 1135
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 34/216 (15%)
Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL--VHVSGMF----------GASRSNT 237
L + + F + K +L ++D TP H +G
Sbjct: 278 LEARAQNEFFRAFFRLPRKEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCC 337
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP------ 291
++ P+ V+ D + + V + ++ ELK +
Sbjct: 338 HVVLPL-------REVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLR 390
Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL----RQQTNLRDRFKAIYNK 347
+K+VH N P+ + C + L Q + R++ K+
Sbjct: 391 LKQVHAN-HPVHYETSPSDDDMASPVFYSTSICTDKFGDLEMVSSQSSEEREKEKS--PL 447
Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQ 383
P+ V Q G + R ++I +
Sbjct: 448 PHPEPLTAVFQQ--SGSQSPDSRLSREQIKISLWND 481
>gi|260773739|ref|ZP_05882654.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
gi|260610700|gb|EEX35904.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
Length = 237
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 34/185 (18%), Positives = 55/185 (29%), Gaps = 33/185 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-----PEAVFITGI 63
D+ET G + D + I + Y+ E + I
Sbjct: 56 DFETSGLNPRQDEILSVGMI-------NIHYPVMSLATAQHYYVESEHCIEAETAVVNHI 108
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P+ L G+ E + + S +I + + + R +
Sbjct: 109 VPETLL-GGISRHELIECLVESLS--GKVVIAHGA-EIEKQFLRQLLSLEDSLPLPLI-- 162
Query: 124 NGNSRWDLLDVMRAIYAF-SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
LD MR + GI +P +L + G+ AH+A ADV
Sbjct: 163 -------FLDTMRLERSLIKYRGIMYPD-------LRLAHIREQKGLPPYLAHNAFADVV 208
Query: 183 ATLAL 187
AT L
Sbjct: 209 ATGEL 213
>gi|260578114|ref|ZP_05846035.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
gi|258603753|gb|EEW17009.1| exonuclease [Corynebacterium jeikeium ATCC 43734]
Length = 198
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 27/195 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQK 67
D ET G +R + A + + + + + L P+ + +TGI+
Sbjct: 16 DLETTGLRPQEERIIEIAALHIRN-----GELQDKYTTLLNPNLSVPQEITDLTGISDGL 70
Query: 68 ALRDGV---VEAEFSRRIHQFFSVPNTCIIGY--------NNIRFDDYYSRNIFYRNFYD 116
V E + + +G+ +N+ FD + ++ R
Sbjct: 71 LADKPTFSEVMPELLNFLRDATLTEPSTSLGFESTPRLVGHNVSFDFSFLQHEILRTQLK 130
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ + N + ++ A P G ++L ++A I H H
Sbjct: 131 NSA----DANRPY-TPRLVCTAEASR---TLIPRESVGR--YRLGNVASYLKIPHRPLHR 180
Query: 177 AKADVYATLALVWLI 191
A +D AT ++ +
Sbjct: 181 AMSDALATYDVLRAL 195
>gi|50554073|ref|XP_504445.1| YALI0E26939p [Yarrowia lipolytica]
gi|49650314|emb|CAG80046.1| YALI0E26939p [Yarrowia lipolytica]
Length = 182
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFC------KPADDY 51
M V D E G D D+ + + D + I+ V C +
Sbjct: 1 MEPPLVWIDCEMTGLDHKNDQIIEICCLLTDDNLQVIDPKGYEAVIHCPKEKLDAMSAWC 60
Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+ +T + VE E I +F ++ N++ D +
Sbjct: 61 VEHHGQSGLTQKCIESTKTMTEVEEELLAYIKRFVPRKGAGVLAGNSVHQDRVFL 115
>gi|116491119|ref|YP_810663.1| Rad3-related DNA helicase [Oenococcus oeni PSU-1]
gi|118586913|ref|ZP_01544346.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290890627|ref|ZP_06553698.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
gi|116091844|gb|ABJ56998.1| 3'-5' exonuclease domain and Rad3-related DNA helicase [Oenococcus
oeni PSU-1]
gi|118432640|gb|EAV39373.1| DNA helicase, Rad3-related family [Oenococcus oeni ATCC BAA-1163]
gi|290479755|gb|EFD88408.1| hypothetical protein AWRIB429_1088 [Oenococcus oeni AWRIB429]
Length = 489
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 29/193 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFI 60
+ F I D ET Q G+ + W+ I + + +P+ + V +
Sbjct: 4 NSTFSIVDLETTAPFKEGGHIIQI-GISFVKNWKIINNFQTM---VNPGVKIPE-QIVDL 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI + E + +R IH S T + +N +R+D Y F R R
Sbjct: 59 TGIKNEDVENAPYFE-DLARMIHDQLS--GTVFVAHN-VRYDFPYLNGEFARIKMRRLRL 114
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ +D ++ P S+KL +L GI H A D
Sbjct: 115 EY---------VDTVQLAQIVFPT----------MNSYKLDELVSKLGINLPRHHRADQD 155
Query: 181 VYATLALVWLIRE 193
AT L I E
Sbjct: 156 ASATAQLFLKIHE 168
>gi|332290155|ref|YP_004421007.1| ribonuclease T [Gallibacterium anatis UMN179]
gi|330433051|gb|AEC18110.1| ribonuclease T [Gallibacterium anatis UMN179]
Length = 224
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 40/211 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITG 62
VI D ET G + D + A + V + + + F K + DP ++ I G
Sbjct: 33 VIVDVETSGLNAQTDGLLELAAITVKMDEQGLLHPDEKCHFQIKLFEGANVDPNSLKING 92
Query: 63 ITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS-----RNIF 110
I P R+ V E + RR + + ++ +N + FD + R
Sbjct: 93 INPDDPQREAVDELTALTGFFQMVRRGQKAAECKRSILVAHNAM-FDYNFLMAAINRTGI 151
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
RN + + S +D A + F ++ + G E
Sbjct: 152 KRNPFHPF--------STFD--TATLAGFMFGQTVLRTACDNAGIP------------FE 189
Query: 171 HVNAHDAKADVYATLALVWLI--REKKPKLF 199
AH A D T L L+ + K+ +F
Sbjct: 190 PSKAHSALYDTEKTAELFCLMVNKLKQANIF 220
>gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family
[Mycobacterium sp. Spyr1]
gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family
[Mycobacterium sp. Spyr1]
Length = 617
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 62/194 (31%), Gaps = 40/194 (20%)
Query: 3 NHFVIYDYETFGRDVALDR---PAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
FV+ D ET G + DR + V+V E + P+ V
Sbjct: 20 TTFVVVDLETTGGRASGDRHDAITEIGAVKVRGG-EVLGEFATL---VDPGRAIPPQIVA 75
Query: 60 ITGITPQKALRDGVVEA------EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+TGIT +E+ EF R ++ +N FD + R RN
Sbjct: 76 LTGITSAMVYDAPRIESVLPSFLEFCR---------GAVLVAHNA-GFDMGFLRAAAERN 125
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
W V+ + A + + D A S KL LA G
Sbjct: 126 QVP------------WPKPPVLCTV-ALARRVLT----RDEAPSVKLSALARLFGASTTP 168
Query: 174 AHDAKADVYATLAL 187
H A D AT+ +
Sbjct: 169 THRALDDARATVDV 182
>gi|302879448|ref|YP_003848012.1| Exonuclease RNase T and DNA polymerase III [Gallionella
capsiferriformans ES-2]
gi|302582237|gb|ADL56248.1| Exonuclease RNase T and DNA polymerase III [Gallionella
capsiferriformans ES-2]
Length = 303
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 35/185 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVR--VDRQWEKIESTEVFFCKPADD--YLPDPEAVFITGIT 64
D ET G + A D + V D + F + D +P PE+ + GIT
Sbjct: 46 DTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIP-PESTEVHGIT 104
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + +A + F + +I +N+ +FD + + +++ W
Sbjct: 105 DEMVQGKRIDDAAVAA-----FLDGVSVVIAHNS-KFDRVFLEKRL--SVFETLPW---- 152
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
G S + W R +G S KL ++ G + AH A+ D YA
Sbjct: 153 GCSLA---------------QVDW--RAEGIGSAKLDYISYQYGFFYE-AHRAEGDCYAL 194
Query: 185 LALVW 189
L ++
Sbjct: 195 LEILQ 199
>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 1572
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 40/191 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+V++D ET G D+ + AG+++ + KI + F DP+
Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGIKI-KNGNKIGEFQKFI---------DPQQKLTKTI 529
Query: 60 --ITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT IT + + ++ QF + C++ +N FD + + +
Sbjct: 530 TNITNITDEMLQGQ-----QTIDQVLPQFLAFAKDCVLVAHNASFDVDFLKE---KAKEL 581
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++D M + + +++ F L+ LA ++ + H
Sbjct: 582 KISLEPKP------IIDTMALSQRYFSNLLKY---------FSLKRLATVFKVKLEDHHR 626
Query: 177 AKADVYATLAL 187
A AD AT +
Sbjct: 627 ALADATATSEI 637
>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 1438
Score = 42.9 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 66/195 (33%), Gaps = 32/195 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +V++D ET G D+ + A V+V + E I+ E F +T
Sbjct: 419 TATYVVFDVETTGLSNQYDKIIELAAVKV-KDGEIIDKFERFS---NPHERLSETIKNLT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I+ + +E + F + + +N FD F Y+
Sbjct: 475 HISDDMLVDAPEIE-----EVLTEFKSWVGDAIFVAHNA-SFD-----MGFIDTGYEHVG 523
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+ N D L++ R I G L LA G+E H A
Sbjct: 524 -IGASTNGVIDTLELSRT--------INTEYGKHG-----LNFLAKKYGVELTQHHRAIY 569
Query: 180 DVYATLAL-VWLIRE 193
D AT + + ++++
Sbjct: 570 DTEATAYMFIKMLKQ 584
>gi|291276271|ref|YP_003516043.1| DNA polymerase III subunit epsilon [Helicobacter mustelae 12198]
gi|290963465|emb|CBG39295.1| Putative dna polymerase III epsilon subunit [Helicobacter mustelae
12198]
Length = 247
Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 35/181 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF-FCKPADDYLPDPEAVFITGI 63
F D ET G + ++ E I++ E F + + + +TGI
Sbjct: 67 FCFVDIETTGSKPNHSSIIEIGAIKY-HGGEIIDTFETLVFSQSVPENI-----TELTGI 120
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
L D E E +R +F N+ + +N + FD + + R + +
Sbjct: 121 D-AGMLADAPSEREVLQRFRKFLG--NSVFVAHN-VVFDYGFISDRLLR-YNEP------ 169
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
Y +P G S + L L GI H A +D
Sbjct: 170 ---------------YLLNPRLCTVELARRGILSARYSLGHLNAFLGIGIDKQHRALSDA 214
Query: 182 Y 182
+
Sbjct: 215 F 215
>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
gi|1090178|prf||2018296A DNA polymerase III
Length = 1435
Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+YD ET G L+ QF V + IE+ FF KP D +TGIT
Sbjct: 404 YVVYDIETTGLSPMLNELIQFGA-SVIKNGRIIETHH-FFIKPKSKL--DSFTTKLTGIT 459
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
Q+ L G E +I F I+ +N FD + + F N
Sbjct: 460 -QEHLEKGYELQEALEKISSIFKAR---IMVAHNAAFDHNFLKQKFIDN 504
>gi|124268531|ref|YP_001022535.1| exonuclease [Methylibium petroleiphilum PM1]
gi|124261306|gb|ABM96300.1| exonuclease [Methylibium petroleiphilum PM1]
Length = 233
Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 49/233 (21%), Positives = 78/233 (33%), Gaps = 47/233 (20%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKI--------------ESTEVFFCKP--ADDYL 52
D E+ G D D A V V + + + E+ +P A
Sbjct: 32 DVESGGLDPRRDPLLAIAAVGV--HFAPVQGERGGRRPRIVLGDRFELLL-RPSGAPSAS 88
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
PD + + GI A R G+ AE + + ++G+++ FD R + R
Sbjct: 89 PDKANILVHGIGIG-AQRAGLDPAEALQAWESYIGRSP--LVGFHS-AFD----RTLIER 140
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
D+ + DN W LD+ + P + L D +GI +
Sbjct: 141 AGRDALGRAPDNP---W--LDLEHLAAVLHRE----PRQRS------LDDWLAHHGITCL 185
Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVH 225
H A AD AT L+ + P L + + + L PL H
Sbjct: 186 ARHQASADALAT---AQLLLKLWPALRQRCDGRFS--TVLDLAAGHRFLPLRH 233
>gi|332977795|gb|EGK14553.1| DNA-directed DNA polymerase III epsilon subunit [Psychrobacter sp.
1501(2011)]
Length = 201
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 27/180 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D E G + D A + ++ + C+P +P E + I G+ P
Sbjct: 37 DCEMTGLNPKKDHLLSIAAIHINGSNIQSGQGLHLICRPP--VMPTKETIVIHGLRPIDV 94
Query: 69 LRDGVVEAEFSRRIHQFF-SVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+G+ + R+ F + P I+GY ++ F + S++ +
Sbjct: 95 -ENGLSYEQMLERLLPFIDNRP---IVGYCPQLDMGFLNKISKSYMGTALPNPII----- 145
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
D+ D+ GI ++ L +A + + AHDA D T
Sbjct: 146 -----DIRDLYNRYSGNRTQGISHQAQQ-------LSSIATQLQLPELAAHDAYNDALMT 193
>gi|313206047|ref|YP_004045224.1| exonuclease rnase t and DNA polymerase iii [Riemerella
anatipestifer DSM 15868]
gi|312445363|gb|ADQ81718.1| Exonuclease RNase T and DNA polymerase III [Riemerella
anatipestifer DSM 15868]
Length = 254
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 27/183 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
I+D ET G +++ DR + ++V+ T+ + P +P A + GI+
Sbjct: 9 LCIFDLETTGTNISKDRIVEICILKVNTDAS--RETKTWLVNPEMH-IPA-FATAVHGIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++D E + +I + S + G+N+ RFD R D
Sbjct: 65 -DEDVKDAPTLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVDFDL----- 116
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
S+ L+D + P + + + L+D AH A+AD AT
Sbjct: 117 --SKMKLVDAQVIFHKMEPRNLSAAYQFYCNKT--LED-----------AHSAEADTLAT 161
Query: 185 LAL 187
+
Sbjct: 162 FEV 164
>gi|262198353|ref|YP_003269562.1| exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
gi|262081700|gb|ACY17669.1| Exonuclease RNase T and DNA polymerase III [Haliangium ochraceum
DSM 14365]
Length = 187
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 25/123 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF-- 59
N + D E G D +R + A + D E + D + PE++
Sbjct: 5 NPLIWMDLEMTGLDPERERIIEIAVLITDNALEIVAE--------GPDLVVHQPESLLEQ 56
Query: 60 ----------ITGITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYS 106
+G+T ++ V EAE ++ F + N+I D +
Sbjct: 57 MDDWNRKHHGASGLT-ERVRASQVSEAEAEAQVLAFLREHVKQGAAPLAGNSIHQDRRFL 115
Query: 107 RNI 109
R
Sbjct: 116 RRY 118
>gi|199597302|ref|ZP_03210733.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus rhamnosus HN001]
gi|199591818|gb|EDY99893.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus rhamnosus HN001]
Length = 180
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 29/140 (20%)
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
DP+ + I GITP F R Q F P I+ +N FD R
Sbjct: 46 DPQNIRIHGITPDMVQDQ----PSFDRVWPHIQMFYTPGR-IVTAHNAPFDVSVLRLTLD 100
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
R + R+ ++D ++ F P + +L ++ A I
Sbjct: 101 RYGIAA---------PRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPL 141
Query: 172 VNAHDAKADVYATLALVWLI 191
+ H+A AD YA ++
Sbjct: 142 EHHHNALADSYA---CARIL 158
>gi|94499178|ref|ZP_01305716.1| ribonuclease T [Oceanobacter sp. RED65]
gi|94428810|gb|EAT13782.1| ribonuclease T [Oceanobacter sp. RED65]
Length = 222
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 78/214 (36%), Gaps = 30/214 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQW--EKIESTEVF-FCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V +D + + KP + + A+ TGI P
Sbjct: 22 DVETAGFNSQTDALLEIAMVIMDMDEQGNMLPGPAMSAHIKPFEGANLEQSALDFTGIDP 81
Query: 66 ----QKALRDGVVEAEFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDSY 118
++A +G + + I + V ++G+N FD + RN +
Sbjct: 82 FDPDRRAEDEGPALKDMFKTIRKAMKVKGCKRAILVGHNA-HFDLGFLNAAIERN---NI 137
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ S + S +D + A + A S KL + ++ +AH A
Sbjct: 138 KRSPFHPFSGFD--TATLSGLALGHTVL--------ARSCKLAGI----DFDNHSAHSAL 183
Query: 179 ADVYATLALVWLIREKKPKL--FEYLYDYRNKNQ 210
D T L LI K +L +++ Y+ K
Sbjct: 184 YDTQKTAELFALIVNKWKQLGGWDWAYEQHVKEN 217
>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
pulmonis]
Length = 1435
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+YD ET G L+ QF V + IE+ FF KP D +TGIT
Sbjct: 404 YVVYDIETTGLSPMLNELIQFGA-SVIKNGRIIETHH-FFIKPKSKL--DSFTTKLTGIT 459
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
Q+ L G E +I F I+ +N FD + + F N
Sbjct: 460 -QEHLEKGYELQEALEKISSIFKAR---IMVAHNAAFDHNFLKQKFIDN 504
>gi|163844775|ref|YP_001622430.1| DNA polymerase III epsilon subunit family exonuclease [Brucella
suis ATCC 23445]
gi|163675498|gb|ABY39608.1| exonuclease, DNA polymerase III, epsilon subunit family [Brucella
suis ATCC 23445]
Length = 224
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 36/187 (19%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 17 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 72
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 73 WMTCYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 129
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD-LALANGIEHVNAHDAKAD 180
D W D S KL LA + H A D
Sbjct: 130 MDGARRLW------------RGD------------STKLDHCLAKIGLARTGHRHGALED 165
Query: 181 VYATLAL 187
Y T L
Sbjct: 166 AYLTAGL 172
>gi|293349750|ref|XP_002727235.1| PREDICTED: rCG22278-like isoform 1 [Rattus norvegicus]
gi|149046303|gb|EDL99196.1| rCG22278 [Rattus norvegicus]
Length = 1104
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 34/216 (15%)
Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL--VHVSGMF----------GASRSNT 237
L + + F + K +L ++D TP H +G
Sbjct: 277 LEARAQNEFFRAFFRLPRKEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCC 336
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP------ 291
++ P+ V+ D + + V + ++ ELK +
Sbjct: 337 HVVLPL-------REVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLR 389
Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL----RQQTNLRDRFKAIYNK 347
+K+VH N P+ + C + L Q + R++ K+
Sbjct: 390 LKQVHAN-HPVHYETSPSDDDMASPVFYSTSICTDKFGDLEMVSSQSSEEREKEKS--PL 446
Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQ 383
P+ V Q G + R ++I +
Sbjct: 447 PHPEPLTAVFQQ--SGSQSPDSRLSREQIKISLWND 480
>gi|119715587|ref|YP_922552.1| oligoribonuclease [Nocardioides sp. JS614]
gi|119536248|gb|ABL80865.1| Exonuclease, RNase T and DNA polymerase III [Nocardioides sp.
JS614]
Length = 222
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M V D E G D+ D + A + D + S KP + L
Sbjct: 1 MNERLVWIDCEMTGLDLRADALIEVAALVTDFDLNVLGSGVDLIVKPPAEAL 52
>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
HKU10-03]
gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
HKU10-03]
Length = 1435
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 61/189 (32%), Gaps = 43/189 (22%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI--- 60
+V++D ET G D+ + A V+V + E I+ E F +P
Sbjct: 419 TYVVFDVETTGLSNQYDKIIELAAVKV-KNGEIIDKFERF---------SNPHEKLTETI 468
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFY 115
T IT +E + F + + +N FD + + R +
Sbjct: 469 KNLTHITDDMLKDAPEIE-----EVLTEFKAWVGDAIFVAHNA-SFDMGFIDTGYERLGF 522
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ N+ D L++ R I G L LA G+E H
Sbjct: 523 GP------STNAVIDTLELSRT--------INTSYGKHG-----LNFLAKKYGVELTQHH 563
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 564 RAIYDTEAT 572
>gi|299771588|ref|YP_003733614.1| oligoribonuclease [Acinetobacter sp. DR1]
gi|298701676|gb|ADI92241.1| oligoribonuclease [Acinetobacter sp. DR1]
Length = 188
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V D L
Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAVHQPDRIL 56
>gi|300797157|ref|NP_001177996.1| TBC1 domain family member 8 [Rattus norvegicus]
Length = 1135
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 34/216 (15%)
Query: 190 LIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPL--VHVSGMF----------GASRSNT 237
L + + F + K +L ++D TP H +G
Sbjct: 278 LEARAQNEFFRAFFRLPRKEKLHAVVDCSLWTPFSRCHTAGRIFSSDSYICFASREDGCC 337
Query: 238 ALIAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVP------ 291
++ P+ V+ D + + V + ++ ELK +
Sbjct: 338 HVVLPL-------REVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLR 390
Query: 292 IKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLL----RQQTNLRDRFKAIYNK 347
+K+VH N P+ + C + L Q + R++ K+
Sbjct: 391 LKQVHAN-HPVHYETSPSDDDMASPVFYSTSICTDKFGDLEMVSSQSSEEREKEKS--PL 447
Query: 348 PYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQ 383
P+ V Q G + R ++I +
Sbjct: 448 PHPEPLTAVFQQ--SGSQSPDSRLSREQIKISLWND 481
>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 241
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 2 TNHFVIYDYETFGRD---VALD--RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
+++D ET G + + R + V E I F D
Sbjct: 5 NERIIVFDTETTGMNMSGPHYEGHRIIEIGAV------EIINRKLTGNTFHVYIKPDRAI 58
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFS 87
DPEA+ + GIT + + G IHQ F
Sbjct: 59 DPEAIEVHGITDEFLV--GKPTY---AEIHQEFM 87
>gi|251789330|ref|YP_003004051.1| ribonuclease T [Dickeya zeae Ech1591]
gi|247537951|gb|ACT06572.1| ribonuclease T [Dickeya zeae Ech1591]
Length = 226
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + ++T F +P + + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAVTLKMDESGWLQP-DATLHFHIEPFEGAILRPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + N II +N FD + R RN
Sbjct: 82 PTNPLRGAVSEYEALHEIFKSVRKGIKEQDCNRAIIVAHNATFDHSFLMAAAERCGLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
Length = 1458
Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--IESTEVFFCKPADDYLPDPEAVFIT 61
+VI+D ET G D+ +F ++ + + I+ K +D IT
Sbjct: 420 TYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQVESIQMFINPEEKISDKI------FAIT 473
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I+ + +D + E +I F + +I +N I+FD + N D
Sbjct: 474 KISNEDV-KDALKIKEALVKIKDFIGD--SVLIAHNGIKFDLPFLNCKLEENKMD 525
>gi|260556115|ref|ZP_05828334.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
gi|260410170|gb|EEX03469.1| oligoribonuclease Orn [Acinetobacter baumannii ATCC 19606]
Length = 163
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V D L
Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRIL 56
>gi|90018234|gb|ABD83930.1| hypothetical protein [Ictalurus punctatus]
Length = 216
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 45/201 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
V D ET G + + Q + + +R + + C P D A +TG
Sbjct: 32 ETLVFXDLETTGLNTSECDIVQLSAISGERSFNV---YILPRC-PIDH-----GASRVTG 82
Query: 63 ITPQKALRDGVVEAEFSRRI------------HQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
+T R ++ + + + + FS P ++G+N RFD R I
Sbjct: 83 LTIH--SRKLLLHGQPMQTVPLREALTSFISFLKTFSRP--VLVGHNCKRFD----RPIL 134
Query: 111 YRNFYD-SYRWSWDNGNSRW-DLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
R + + + + S + D L + R ++ + LQ
Sbjct: 135 LRIMTEFNLLKEFQDVVSAYLDTLLLSREMFMLQK------YSQQFLVQYFLQ------- 181
Query: 169 IEHVNAHDAKADVYATLALVW 189
+ AHDA DV L
Sbjct: 182 -KSYRAHDATEDVRTLQELFR 201
>gi|73662598|ref|YP_301379.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642618|sp|Q49XR1|DING_STAS1 RecName: Full=Probable ATP-dependent helicase dinG homolog
gi|72495113|dbj|BAE18434.1| putative ATP-dependent DNA helicase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 900
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 27/186 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + D Q G+ R+ + I + D +P P +T I
Sbjct: 10 DLETTGNQLDYDEIIQI-GITFVRENKIIGTYHSMI--KTDLEIP-PFIQALTSIEEDML 65
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ E + I++ + +N + FD + + F +
Sbjct: 66 NQAPYFH-EIAEDIYKQID--GCIFVAHN-VAFDLNFIKKSFKQC------HINYRPKKV 115
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
D L++ + + P+ S++L +LA A+GI NAH A D T L+
Sbjct: 116 MDTLELFKVAF---------PTDK----SYQLSELAEAHGIILNNAHRADEDAATTAQLM 162
Query: 189 WLIREK 194
+ EK
Sbjct: 163 IIAFEK 168
>gi|307564574|ref|ZP_07627114.1| exonuclease [Prevotella amnii CRIS 21A-A]
gi|307346732|gb|EFN92029.1| exonuclease [Prevotella amnii CRIS 21A-A]
Length = 287
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
+++D ET G D+ DR Q + ++V ++ E F P PE V +TGI
Sbjct: 9 LIVFDLETTGLDLVNDRIIQISYIKVYPDGKE--ERENIFINPGKQI---PEEVIALTGI 63
Query: 64 TPQKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
T + + F + + G+N+ RFD F R +
Sbjct: 64 TNEDVAKA----PTFKEKGKELSLKFTGCDFAGFNSNRFDIPMLAEEFLRAGIE 113
>gi|260767723|ref|ZP_05876658.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
gi|260617232|gb|EEX42416.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
Length = 222
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 21/196 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D V + Q I E + DP+ V + I PQ
Sbjct: 36 DIETSGLDAEHDHIVSIGWVPIVNQ--VIRLAEARYFLITPSGQNDPQQVVLHHIMPQM- 92
Query: 69 LRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
R G+ ++ I F+ ++ + ++ + + + ++ + W
Sbjct: 93 QRQGIP---LAQAIELLFTQLKGKVLLAHGSV-VERQFIHHFMQQHGWPDLPIVW----- 143
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
D L + +A ++P + + +D ++L + + AH A +D AT
Sbjct: 144 -LDTLKIEQAYAQYAPYNMPHSNAND----WRLSTVRKRYHLPAYQAHHALSDAIAT--- 195
Query: 188 VWLIREKKPKLFEYLY 203
L ++ +LF Y
Sbjct: 196 AELYLAQQNRLFAKAY 211
>gi|15827135|ref|NP_301398.1| oligoribonuclease [Mycobacterium leprae TN]
gi|221229613|ref|YP_002503029.1| oligoribonuclease [Mycobacterium leprae Br4923]
gi|7227905|sp|O07708|ORN_MYCLE RecName: Full=Oligoribonuclease
gi|2222713|emb|CAB09908.1| hypothetical protein MLCL383.34c [Mycobacterium leprae]
gi|13092683|emb|CAC29935.1| putative oligoribonuclease [Mycobacterium leprae]
gi|219932720|emb|CAR70520.1| putative oligoribonuclease [Mycobacterium leprae Br4923]
Length = 215
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D +
Sbjct: 1 MHDELVWIDCEMTGLDLGSDQLIEIAALVTDADLNILGD 39
>gi|294636395|ref|ZP_06714781.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
gi|291090340|gb|EFE22901.1| ribonuclease T [Edwardsiella tarda ATCC 23685]
Length = 221
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G D + + A V + D W + + F +P + + PEA+ GI P
Sbjct: 23 DVETAGFDANRNALLEIAAVTLRMNDAGWLETDQCLHFHIEPFEGAILSPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + N +I +N FD + R RN
Sbjct: 83 HNPLRGAVSEYEALHAIFKVVRKGIKDQECNRAVIVAHNAHFDHSFLMAAAERAKLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|255319398|ref|ZP_05360614.1| oligoribonuclease [Acinetobacter radioresistens SK82]
gi|262380862|ref|ZP_06074013.1| oligoribonuclease [Acinetobacter radioresistens SH164]
gi|255303534|gb|EET82735.1| oligoribonuclease [Acinetobacter radioresistens SK82]
gi|262297497|gb|EEY85415.1| oligoribonuclease [Acinetobacter radioresistens SH164]
Length = 187
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 1 MTNH----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V +D L
Sbjct: 1 MSSTPDTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNILAEGPVLAIHQSDQVL 56
>gi|229551811|ref|ZP_04440536.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
gi|258539212|ref|YP_003173711.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
gi|229314755|gb|EEN80728.1| DNA-directed DNA polymerase III [Lactobacillus rhamnosus LMS2-1]
gi|257150888|emb|CAR89860.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus Lc 705]
Length = 180
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 29/140 (20%)
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
DP+ + I GITP F R Q F P I+ +N FD R
Sbjct: 46 DPQNIRIHGITPDMVQDQ----PTFDRVWPHIQMFYTPGR-IVTAHNAPFDVSVLRLTLD 100
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
R + R+ ++D ++ F P + +L ++ A I
Sbjct: 101 RYGIAA---------PRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPL 141
Query: 172 VNAHDAKADVYATLALVWLI 191
+ H+A AD YA ++
Sbjct: 142 EHHHNALADSYA---CARIL 158
>gi|254489693|ref|ZP_05102889.1| exonuclease superfamily [Methylophaga thiooxidans DMS010]
gi|224465102|gb|EEF81355.1| exonuclease superfamily [Methylophaga thiooxydans DMS010]
Length = 185
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ + D E G D D + A + D + +
Sbjct: 6 NNLIWIDLEMTGLDTNNDYIIEIATIVTDAKLNVLAE 42
>gi|149910187|ref|ZP_01898833.1| Oligoribonuclease [Moritella sp. PE36]
gi|149806773|gb|EDM66737.1| Oligoribonuclease [Moritella sp. PE36]
Length = 188
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N+ V D E G D + A + D + +
Sbjct: 13 NNLVWIDLEMTGLDPEKCLIIEIATIVTDSELNILAE 49
>gi|49473693|ref|YP_031735.1| DNA polymerase III epsilon chain [Bartonella quintana str.
Toulouse]
gi|49239196|emb|CAF25512.1| DNA polymerase III epsilon chain [Bartonella quintana str.
Toulouse]
Length = 235
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPAD-DYLPDPEAVFIT 61
+I+D ET G D DR + V E I+ F + EAV I
Sbjct: 4 IIFDTETTGLDKEKDRIIEIGCV------EMIDRYLTGKRFHVYLNPQGVVISDEAVAIH 57
Query: 62 GITPQKALRD 71
G+T ++ +
Sbjct: 58 GLTNERLKNE 67
>gi|238898583|ref|YP_002924264.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229466342|gb|ACQ68116.1| DNA polymerase III epsilon subunit [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 221
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 64/197 (32%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E IE + F +P +PEA+ GI P
Sbjct: 30 DVETAGFNTKTDALLEIAAVTLFMDKEGWLHIEQSMHFHVEPFSGANFEPEALAFNGIDP 89
Query: 66 QKALRDGVVEAEFSRRIHQFF---SVPNTC---IIGYNNIRFDDYYS-----RNIFYRNF 114
LRD E E ++I ++ C II +N FD + R +N
Sbjct: 90 HSPLRDAKSEFEVLKKIFKWVQKGMKEQYCKRAIIVAHNAGFDHAFVMNAAKRTGLKQNP 149
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + S +D A S + G T L + A
Sbjct: 150 FHPF--------STFD-------TAALSGLAL-------GQTVLAKACLTAGLNFDMSRA 187
Query: 175 HDAKADVYATLALVWLI 191
H A D T L
Sbjct: 188 HSALYDTQQT---ARLF 201
>gi|254448582|ref|ZP_05062041.1| ribonuclease T [gamma proteobacterium HTCC5015]
gi|198261771|gb|EDY86057.1| ribonuclease T [gamma proteobacterium HTCC5015]
Length = 212
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 35/199 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V +D + T +P +P+++ ITGI
Sbjct: 20 DIETGGFNAQTDAVLEIAAVMIDMDHQGRLR-VGETISTHVEPFQGANIEPKSLEITGID 78
Query: 65 PQKALRDGVVEAEFSRR----IHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFYDS 117
LR V E E + I ++G+N+ FD + R
Sbjct: 79 LNNPLRGAVSEREALDKLLKPIRSAVKNHGCTRAILVGHNSF-FDLNFLNAAIDRCT--- 134
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAH 175
Y+ + + S +D + + Y G T L A G+ + AH
Sbjct: 135 YKRNPFHAFSSFDTVTIAGLAY--------------GQTV--LARACEAAGLGWNNSEAH 178
Query: 176 DAKADVYATLAL-VWLIRE 193
A D T L +I +
Sbjct: 179 SAVYDAEQTARLFCKVINQ 197
>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
3_1_44]
gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
3_1_44]
Length = 862
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 29/184 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
V+YD E+ G D + DR Q A +R+D + +E+ E F +P ++ + G +
Sbjct: 495 VVYDVESTGTDTSQDRIIQIAAIRIDENGQVLEAFERF---INPG-IPVGQSKEVHGFSD 550
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN--FYDSYRWSWD 123
G A + + FS + I+G+N + +D N R+ ++
Sbjct: 551 AYLQEHGEDPATVLKA-FKEFSK-DAIIVGHN-VNYDVTIFTNELARHNLGNPEFKAI-- 605
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D LD+ R Y P+ + KL LA I H H+A D+ A
Sbjct: 606 -----YDTLDIYRRFY---PNL----------PNHKLGFLASKFPIHHEPTHNAMDDILA 647
Query: 184 TLAL 187
T L
Sbjct: 648 TAQL 651
>gi|206580062|ref|YP_002238188.1| ribonuclease T [Klebsiella pneumoniae 342]
gi|288935177|ref|YP_003439236.1| ribonuclease T [Klebsiella variicola At-22]
gi|290509235|ref|ZP_06548606.1| ribonuclease T [Klebsiella sp. 1_1_55]
gi|206569120|gb|ACI10896.1| ribonuclease T [Klebsiella pneumoniae 342]
gi|288889886|gb|ADC58204.1| ribonuclease T [Klebsiella variicola At-22]
gi|289778629|gb|EFD86626.1| ribonuclease T [Klebsiella sp. 1_1_55]
Length = 215
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 59/205 (28%), Gaps = 38/205 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + + T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DETLHFHVEPFEGANLQPEALAFNGIN 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E + I + + I+ +N FD ++ R RN
Sbjct: 82 PHDPERGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACIAAGMAFDG-----------------AQ 179
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D T L I + +L
Sbjct: 180 AHSALYDTEQTAQLFCEIVNRWKRL 204
>gi|261416331|ref|YP_003250014.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261372787|gb|ACX75532.1| DNA polymerase III, epsilon subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302325547|gb|ADL24748.1| exonuclease, DNA polymerase III, epsilon subunit family
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 215
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-------EKIESTEVFFCKPADDYLP 53
+ FV +D ET G D + V+ + + I + + L
Sbjct: 4 LPPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTL---VKPNMLI 60
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
EA + IT K + + E ++ F P + ++ +N FD + R + +N
Sbjct: 61 PAEATNVNHIT-DKMVENAPPVGEALKQFTA-FCGPGSILLAHNA-NFDASFLRTAYEQN 117
>gi|119384658|ref|YP_915714.1| ATP phosphoribosyltransferase regulatory subunit [Paracoccus
denitrificans PD1222]
gi|119374425|gb|ABL70018.1| ATP phosphoribosyltransferase regulatory subunit [Paracoccus
denitrificans PD1222]
Length = 360
Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 39/234 (16%)
Query: 257 NLSGDMRVFQDLDSVQLAKRLFTSHDELKGL------VPVPIKEVHLNKCPILMPIDYCK 310
++ + DL + R + + D ++G VP+ ++H+ + +
Sbjct: 28 DILLEAETLLDLYGEDIRARAYVTQDPIRGEMMLRPDFTVPVVQMHM--------ANGAE 79
Query: 311 KEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD-SQLYDGFFAD-- 367
+ G + R ++ + + +A + D + L+ A
Sbjct: 80 PARYCYLG-EVFRKQDHGETRPEHPRDNEYLQAGFELFARDPEADAEVFALFHDILAPLN 138
Query: 368 ------VDRQIMDRILRTA---PEQLSTLNLPFSDRRLPELFFRY----RARNFPHT--- 411
+MD + + + L+ + RR L R+ AR+FP +
Sbjct: 139 LQASMGDMDLLMDAVRALPLSGARRAALLHHIWRPRRFARLLARFATPAEARSFPESGAP 198
Query: 412 ---L-SEKEKQDWLEH-RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
L S E Q ++ R ++ +L+ L + L
Sbjct: 199 WTGLRSPAEMQARIDRLRGDAAEAPLAPQWVERLERLFAIGAPAPEALRQLREL 252
>gi|258507958|ref|YP_003170709.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
gi|257147885|emb|CAR86858.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
gi|259649285|dbj|BAI41447.1| DNA polymerase III epsilon subunit [Lactobacillus rhamnosus GG]
Length = 180
Score = 42.5 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 29/140 (20%)
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
DP+ + I GITP F R Q F P I+ +N FD R
Sbjct: 46 DPQNIRIHGITPDMVQDQ----PTFDRVWPHIQMFYTPGR-IVTAHNAPFDVSVLRLTLD 100
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
R + R+ ++D ++ F P + +L ++ A I
Sbjct: 101 RYGIAA---------PRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALKIPL 141
Query: 172 VNAHDAKADVYATLALVWLI 191
+ H+A AD YA ++
Sbjct: 142 EHHHNALADSYA---CARIL 158
>gi|284030055|ref|YP_003379986.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
17836]
gi|283809348|gb|ADB31187.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
17836]
Length = 202
Score = 42.5 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-- 58
M + V D E G D+A D + A + D + + P P A+
Sbjct: 1 MNDRLVWIDCEMTGLDLAADALIEVAVLVTDYELNVLGEGIDLVIAPP------PAALEQ 54
Query: 59 -------FITGITPQKALRDGVVEAEFSRRIHQFFS 87
TG L G+ AE +++ F +
Sbjct: 55 MGQFVRDMHTGSGLLDELATGIPLAEAEQQVLDFIT 90
>gi|182435215|ref|YP_001822934.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326775853|ref|ZP_08235118.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
griseus XylebKG-1]
gi|178463731|dbj|BAG18251.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326656186|gb|EGE41032.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
griseus XylebKG-1]
Length = 236
Score = 42.5 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 37/120 (30%), Gaps = 11/120 (9%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITG 62
V +D ET G DV DR A VR+D E +P+ +A I G
Sbjct: 7 TLVGFDLETTGTDVENDRIVTAALVRLDADGTVAEQRTWL---LDPGVAIPE-QASAIHG 62
Query: 63 ITPQKALRDGVVEAEFSRRIH---QFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I A R G I ++ N R+D R+ S
Sbjct: 63 IGTDHARRHGARAVVAVEEIAHAVAEVLRSGVPLVV--MNARYDLSLLDRECRRHGLPSV 120
>gi|88856168|ref|ZP_01130828.1| DNA polymerase III subunit epsilon [marine actinobacterium
PHSC20C1]
gi|88814487|gb|EAR24349.1| DNA polymerase III subunit epsilon [marine actinobacterium
PHSC20C1]
Length = 232
Score = 42.5 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 31/188 (16%)
Query: 1 MTN--HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-- 56
M+N +D ET G DV R VD I D+L DP
Sbjct: 1 MSNSGTLATFDLETTGVDVETSRIVSACIALVDASGVVISRW---------DWLADPGVE 51
Query: 57 ----AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
A I GI+ ++A +G A I Q V TC +G + ++ Y ++ R
Sbjct: 52 IPEGAAAIHGISTERARAEGRDAAIVVAEIVQTLKV--TCALGIPLVVYNAPYDLSLLDR 109
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
R+ + + P I L+ + G+
Sbjct: 110 E------------CRRYSIDGLREPYIVIDPLVIDKAVDRYRRGKRTLEVTSGLYGVALD 157
Query: 173 NAHDAKAD 180
+AHDA +D
Sbjct: 158 DAHDAGSD 165
>gi|152996651|ref|YP_001341486.1| oligoribonuclease [Marinomonas sp. MWYL1]
gi|150837575|gb|ABR71551.1| Exonuclease RNase T and DNA polymerase III [Marinomonas sp.
MWYL1]
Length = 185
Score = 42.5 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D D + A V D+ +
Sbjct: 6 ENLVWIDLEMTGLDPETDTIIEIATVVTDKHLNVLAK 42
>gi|237715177|ref|ZP_04545658.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
gi|262408870|ref|ZP_06085415.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647646|ref|ZP_06725213.1| exonuclease [Bacteroides ovatus SD CC 2a]
gi|294810715|ref|ZP_06769363.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
gi|298481744|ref|ZP_06999934.1| exonuclease [Bacteroides sp. D22]
gi|229445010|gb|EEO50801.1| DNA Pol III epsilon chain [Bacteroides sp. D1]
gi|262353081|gb|EEZ02176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292637012|gb|EFF55463.1| exonuclease [Bacteroides ovatus SD CC 2a]
gi|294442048|gb|EFG10867.1| exonuclease [Bacteroides xylanisolvens SD CC 1b]
gi|295087704|emb|CBK69227.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Bacteroides xylanisolvens XB1A]
gi|298271966|gb|EFI13537.1| exonuclease [Bacteroides sp. D22]
Length = 259
Score = 42.5 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + + P PEA
Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE--EAKTLRINPEMHI---PEASSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 60 IHGIY-DADVADCPTFKEVAKNIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----EHV 172
+D+ + + D F K++ L+ A
Sbjct: 114 ------------IDMTKRKFV------------DVQVIFHKMEQRTLSAAYKFYCDKNLE 149
Query: 173 NAHDAKADVYATLALVW 189
+AH A+AD AT ++
Sbjct: 150 DAHTAEADTRATYEVLK 166
>gi|310287853|ref|YP_003939111.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
gi|309251789|gb|ADO53537.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum S17]
Length = 180
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 30/199 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + +V+ D ET G D +F V+V + +++ + + +P +
Sbjct: 7 LPDDYVVLDLETTGVSWYRDTIIEFGAVKV-VDRKPVDTYQQLVNPMRN---LNPFITQL 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGITP A + F + +IG+N +RFD + R + +
Sbjct: 63 TGITPDMLE-----PAPTLDTVLPDFLRWCGDDAMIGHNIMRFDIKFIDLAAQRILHHAV 117
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D ++ + P +L DL I V H A
Sbjct: 118 P------NR---IIDTLQMSRSMYPQ-----YNRH-----RLVDLIQRFDIADVEEHRAL 158
Query: 179 ADVYATLALVWLIREKKPK 197
+D T +R+++ +
Sbjct: 159 SDAEQTQMCFEYMRDEQRR 177
>gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32]
Length = 567
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 61/185 (32%), Gaps = 25/185 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G + V+V E + A +P P+ V +TG
Sbjct: 20 TTFVVFDLETTGAPPGPSGITEIGAVKVRGG-EVLGEFATLVNPGAP--IP-PQIVSLTG 75
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT +A+ E + F ++ +N FD + R + Y
Sbjct: 76 IT--QAMVYDAPPIE--EVLPAFLEFIGGAVLVAHNSGFDTSHMRAACEGHGY------- 124
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
W V+ + P + G + L LAL G H A D
Sbjct: 125 -----VWPKATVVCTVRLARR---VVPRDEVGRYN--LTALALLFGARTRPTHRALDDAR 174
Query: 183 ATLAL 187
AT+ +
Sbjct: 175 ATVDV 179
>gi|84514691|ref|ZP_01002055.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
vestfoldensis SKA53]
gi|84511742|gb|EAQ08195.1| exonuclease, DNA polymerase III, epsilon subunit family [Loktanella
vestfoldensis SKA53]
Length = 469
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D Q +RV + P +P + + I
Sbjct: 275 TYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLVNPGR-AIPA-SSTAVHRI 332
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T ++D R+ H F+ + +N FD F+ + +D
Sbjct: 333 T-DAMVKDAPDMVHAGRKFHS-FARDAVLVA--HNAPFD-----LSFFHRYAPKIGMKFD 383
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADV 181
+ +LD + GI +G T L +LA GIE + H A D
Sbjct: 384 HP-----VLDTVLLSAVLF--GIT-----EGHT---LDELAKRLGIELLDKHRHTAIGDA 428
Query: 182 YAT 184
AT
Sbjct: 429 IAT 431
>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
Length = 315
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVR 29
+T +V+ D+ET G + DR Q A VR
Sbjct: 6 LTGDYVVIDFETTGFNPYNDRIIQVAAVR 34
>gi|242239767|ref|YP_002987948.1| exonuclease RNase T and DNA polymerase III [Dickeya dadantii
Ech703]
gi|242131824|gb|ACS86126.1| Exonuclease RNase T and DNA polymerase III [Dickeya dadantii
Ech703]
Length = 181
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 1 MTNHFVIY-DYETFGRDVALDRPAQFAGVRVDRQWEKIEST-EVFFCKPADDYLPD-PEA 57
M++ + D ET G + + + + + D L PEA
Sbjct: 1 MSDELYVSVDVETSGPVPGIYSLLSIGA-------CVVSEPTQSIYLELQPDGLKHDPEA 53
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT-----CIIGYNNIRFDDYYSRNIFYR 112
V +TG+ K +G+ ++ Q+ + +G N FD + F++
Sbjct: 54 VAVTGLDLTKLESEGLPPQVAMLKLEQWLTQVCPAEQKVIFVGLNA-PFDWSFINYYFHK 112
Query: 113 -NFYDSY 118
+ + +
Sbjct: 113 YSGMNPF 119
>gi|206889195|ref|YP_002247891.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741133|gb|ACI20190.1| DNA polymerase III PolC-type, putative [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 225
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 24/186 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D E G D D + + I ++F+ P +AV I +T
Sbjct: 20 FVVIDTELTGLDEKNDSIISIGAITMRE--RSILIGDIFYRILNPQCKPKDKAVLIHKLT 77
Query: 65 PQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ + + I + F N I+G+ I D + R W
Sbjct: 78 STELEQCPD-----IKLILKEFIDFIKNRPIVGH-FIEIDIKFLRKE---------TSKW 122
Query: 123 DNGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N + +D + + I + GA S L ++A A I+ HDA D
Sbjct: 123 LNTGFTPEAIDTYIIFNWLIEREIIS--KKFKGAKS--LPEIAEAFDIKVDMLHDALYDA 178
Query: 182 YATLAL 187
+ T +
Sbjct: 179 FITAQI 184
>gi|313682834|ref|YP_004060572.1| exonuclease RNAase t and DNA polymerase iii [Sulfuricurvum kujiense
DSM 16994]
gi|313155694|gb|ADR34372.1| Exonuclease RNase T and DNA polymerase III [Sulfuricurvum kujiense
DSM 16994]
Length = 293
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 59/265 (22%), Positives = 92/265 (34%), Gaps = 40/265 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITG 62
H +I D ET G +DR Q + + D + +I C P LP EA+ I
Sbjct: 3 HTIILDTETTGAG-EVDRICQLSYLVCDEK-GEILELHNDLCTPP---LPISFEAMAIHH 57
Query: 63 ITPQKALRDGVV-EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
ITP+ E R+ + P+ ++ N FD
Sbjct: 58 ITPEMLTGAPKCIETSAFNRL-AELNTPDNLMV-IQNAEFD------------LGMLAKE 103
Query: 122 WDN-GNSRWDLLDVMRAIYAFS-PDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
D V+RA + P G+Q+ G K Q L GIE + AHDA
Sbjct: 104 GMGLEMKLVDTFRVLRAWHPLDTPHGLQFKRYQWGLYH-KEQPLIDKLGIE-IKAHDALG 161
Query: 180 DVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTAL 239
DV ++ L+E L + N +I++ + P++ FG +
Sbjct: 162 DVIV-------LKH----LYEKLLESHN---AEGMIELCS-KPIILDYVPFGKHKGKRFE 206
Query: 240 IAPVAWHPRYKDSVIGCNLSGDMRV 264
+ K + +L D+R
Sbjct: 207 EVALEARNDLKYMLENFDLDSDLRA 231
>gi|301063709|ref|ZP_07204220.1| exonuclease [delta proteobacterium NaphS2]
gi|300442182|gb|EFK06436.1| exonuclease [delta proteobacterium NaphS2]
Length = 177
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 9/60 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
M + V D E G D + A + D + D + PE+
Sbjct: 1 MIGNLVWIDLEMTGLDPEHHVIVEIASIVTDDHLSVLAE--------GPDIVIHQPESTL 52
>gi|268679559|ref|YP_003303990.1| exonuclease RNase T and DNA polymerase III [Sulfurospirillum
deleyianum DSM 6946]
gi|268617590|gb|ACZ11955.1| Exonuclease RNase T and DNA polymerase III [Sulfurospirillum
deleyianum DSM 6946]
Length = 246
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 32/184 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
++++D ET G + DR Q + VD + EVF + LP EA+ + GI
Sbjct: 4 YILFDTETTG-NNEEDRIIQIGAMIVDAK----GQVEVFD-ELCSTVLPIKVEAMAVHGI 57
Query: 64 TPQKALRDGV-VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
TP G+ + F + + + N I +N+ FD + F +
Sbjct: 58 TPNLIEGKGLFTDTNFYKTLLSLNNQENYLIA--HNMPFDMGMLQK---EGFIPDLK--- 109
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ----DLALANGIEH-VNAHDA 177
++D +R P+ PS+ + L+ + A A+ + AHDA
Sbjct: 110 --------IIDTLRVAKHLIPNS---PSKALQYLRYDLELYKNEQAEADKYNITIKAHDA 158
Query: 178 KADV 181
DV
Sbjct: 159 IGDV 162
>gi|87302916|ref|ZP_01085720.1| exonuclease [Synechococcus sp. WH 5701]
gi|87282412|gb|EAQ74371.1| exonuclease [Synechococcus sp. WH 5701]
Length = 187
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 58/195 (29%), Gaps = 45/195 (23%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
++ FV D+ET + + D A +RV + + T P+ + I
Sbjct: 23 SSSFVALDFET--ANYSRDSVCSLAIIRV-ESLKVVSRTYRLIRPPSPHF----MFTDIH 75
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNIRFDDYYSRNIF--YRNFYD 116
GIT E F H+F P I +N FD R YR
Sbjct: 76 GITWGDVK----SEPTFKELWHEF--RPLFEGISFIAAHNASFDSSVMRACCDTYRIVPP 129
Query: 117 --SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
Y + + + R + P + G L+
Sbjct: 130 GAPYLCT----------VKLARQTWQLRPANLPSVCAYLG---LHLEH------------ 164
Query: 175 HDAKADVYATLALVW 189
H+A +D A +V
Sbjct: 165 HNALSDAEACANIVR 179
>gi|326791308|ref|YP_004309129.1| exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
DSM 5427]
gi|326542072|gb|ADZ83931.1| Exonuclease RNase T and DNA polymerase III [Clostridium lentocellum
DSM 5427]
Length = 248
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 45/237 (18%)
Query: 4 HFVIYDYETFGRD--VALD----------RPAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
+++++D E F +D D Q V++D + I++ KP
Sbjct: 2 NYIVFDLE-FNQDFSARKDVVNKENPYTFEIIQIGAVKLDENFHTIDTF-NRLIKPTIYE 59
Query: 52 LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIF 110
+P ++TGIT ++ ++ + I S CI G ++++ +NI
Sbjct: 60 EMNPFVSYLTGITIEQLAQEESFSEVYKAYIEFIGSRKAICCIWGTSDMKI---LFKNIL 116
Query: 111 YRNFYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS---FKLQDLALA 166
Y + + N + +IY G S +LQD
Sbjct: 117 YHKLDPAPFPRMFIN-------IQPYTSIYL-------------GLPSKKLLRLQDAVNM 156
Query: 167 NGIEHVNA-HDAKADVYATLALVWLIREKK--PKLFEYLYDYRNKNQLRKLIDIQNM 220
I A H A +D Y T + + + P ++ + +K ID +
Sbjct: 157 LQIPTSTAFHLALSDAYYTAEIFKKVYQPSITPNCYDPYEASKLSRPAKKHIDFDAL 213
>gi|71066107|ref|YP_264834.1| oligoribonuclease [Psychrobacter arcticus 273-4]
gi|71039092|gb|AAZ19400.1| putative oligoribonuclease protein [Psychrobacter arcticus 273-4]
Length = 195
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
V D E G D D + A V D + VF K +D
Sbjct: 20 LVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSD 64
>gi|328882628|emb|CCA55867.1| 3-to-5 oligoribonuclease [Streptomyces venezuelae ATCC 10712]
Length = 200
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV- 58
M + V D E G + D + A + D + + +P D L PE V
Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGDGVDIVIRPPDAALETMPEIVR 60
Query: 59 -FITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
T AL G EA+ I + P + N++ D
Sbjct: 61 QMHTASGLLDALAGGTTLADAEAQVLAYIREHVKEPGKAPLCGNSVSTD 109
>gi|217978678|ref|YP_002362825.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
gi|217504054|gb|ACK51463.1| DNA polymerase III, epsilon subunit [Methylocella silvestris BL2]
Length = 235
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
D ET G D R + V + I + + F + +PD EA + GI+ +
Sbjct: 7 DTETTGLDPKQGHRIVEIGAVEL---LNSIPTGQSFHVYIHPERDMPD-EAFRVHGISLE 62
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ F+ + I +N FD + F R + W
Sbjct: 63 FLTGKPL----FAEIVPALIDFLGEAKIIAHNAEFDFRFLNAEFLRAEAEPLAWE 113
>gi|149276274|ref|ZP_01882418.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
gi|149232794|gb|EDM38169.1| DNA polymerase III epsilon subunit [Pedobacter sp. BAL39]
Length = 334
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGI 63
+D ET G +V DR + A ++ + + + + +P P A I GI
Sbjct: 9 LAFFDLETTGVNVGSDRIVEIAILKAMPD----GTELIKTLRINPE-MPIPLASSLIHGI 63
Query: 64 TPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ E F + + +F + + GYN+ RFD F R D
Sbjct: 64 YDEHIAA----EPTFKAVAAEVAEFIGDAD--LAGYNSNRFDIPVLLEEFLRAGVD 113
>gi|29832981|ref|NP_827615.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
MA-4680]
gi|29610102|dbj|BAC74150.1| putative DNA polymerase III epsilon subunit [Streptomyces
avermitilis MA-4680]
Length = 325
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 35/177 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T
Sbjct: 26 DVETTGL-ARDDRIISAAVYRLDAR-GEVEDHWYTMVNPERD----PGPVWIHGLTSDVL 79
Query: 69 LRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ E AEF+ R+ ++ +N + F + +
Sbjct: 80 EGAPLFEDIAAEFASRLADR------VLVAHNAV----------FDWSM---IAREYARA 120
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S+ + + I G+ P+ KL+ LA G+ AH A D
Sbjct: 121 KSQAPVRQRLCTIALSKELGLPLPNH-------KLESLAAHFGVVQQRAHHALDDAR 170
>gi|182438534|ref|YP_001826253.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326779181|ref|ZP_08238446.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1]
gi|11133770|sp|P57667|ORN_STRGR RecName: Full=Oligoribonuclease
gi|6277197|dbj|BAA86266.1| ORF1 [Streptomyces griseus]
gi|178467050|dbj|BAG21570.1| oligoribonuclease [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326659514|gb|EGE44360.1| Oligoribonuclease [Streptomyces cf. griseus XylebKG-1]
Length = 201
Score = 42.5 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G +A D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAAL 52
>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
Length = 1435
Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E +E + F + + + +T IT
Sbjct: 418 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVLERFDKF---INPHHPLSEQTINLTSIT 473
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + EA ++ F+ C +N++FD + R
Sbjct: 474 -DEMVSAADDEAVVIKQFQDFYGDRPLCG---HNVQFDVGFVNAALRRAGLKEI------ 523
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L LA + + H A D AT
Sbjct: 524 ---TQPVVDTLEVSRLLHP--------EQNRHT--LDSLAKKYNVSLEHHHRANQDAEAT 570
>gi|15607062|ref|NP_214444.1| hypothetical protein aq_2108 [Aquifex aeolicus VF5]
gi|2984321|gb|AAC07843.1| putative protein [Aquifex aeolicus VF5]
Length = 210
Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 31/181 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV++D E DV + V V + +I+ ++ F+ D + +A I GIT
Sbjct: 37 FVVFDCEATELDVKKAKLLSIGAVEV-KNL-EIDLSKSFYEILKSDEI---KAAEIHGIT 91
Query: 65 PQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + G E I+ F + + ++GY ++FD + F
Sbjct: 92 REDVEKYGKEPKE---VIYDFLKYIKGSVLVGY-YVKFDVSLVEKYSIKYFQYPII---- 143
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
N + DL ++ Y G + L DL G+E H+A D Y
Sbjct: 144 --NYKLDLFSFVKREY------------QSGRS---LDDLMKELGVEIRARHNALEDAYI 186
Query: 184 T 184
T
Sbjct: 187 T 187
>gi|320010661|gb|ADW05511.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
flavogriseus ATCC 33331]
Length = 202
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G +A D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAAL 52
>gi|225376763|ref|ZP_03753984.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
16841]
gi|225211389|gb|EEG93743.1| hypothetical protein ROSEINA2194_02405 [Roseburia inulinivorans DSM
16841]
Length = 241
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 52/243 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDP 55
M +V+ D E G + DR + RV + +I + + K + +
Sbjct: 1 MLTDYVVIDLEMTGLNAKTDRILEAGAARVRGNVVTATFSEIINPKR---KLPEKVVS-- 55
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+TGIT + A + E + FF IG + + + F + +
Sbjct: 56 ----LTGITNEMAAQG----KETDATLAAFFD-----FIGEDILVGQNVIFDYSFLKQWA 102
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+++ +++ +D ++ F P + D L L GIE V+AH
Sbjct: 103 VNHKRTFERN-----AVDTLKLARKFLPQ----EQKKD------LASLCSYFGIERVHAH 147
Query: 176 DAKADVYATLALVWLIREKKPKLFE---------YLYDYR-NKNQLRKLIDIQNMTPLVH 225
A DV T I E+ K++E Y Y+ K I+ + V
Sbjct: 148 RALDDVMET----QQIFEQMQKMYEAGATGAFRPYPLQYKVKKQSPATPQQIKYLKQFVE 203
Query: 226 VSG 228
G
Sbjct: 204 FHG 206
>gi|71908614|ref|YP_286201.1| oligoribonuclease [Dechloromonas aromatica RCB]
gi|71848235|gb|AAZ47731.1| Exonuclease [Dechloromonas aromatica RCB]
Length = 184
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
N+ V D E G + DR + A V + + E + + + +D+ L
Sbjct: 5 ANNLVWLDMEMTGLNPDGDRIIEMAMVVTNSELEMVAESPSWVVHQSDEIL 55
>gi|325269040|ref|ZP_08135661.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
multiformis DSM 16608]
gi|324988661|gb|EGC20623.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella
multiformis DSM 16608]
Length = 284
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+T VI+D E G D+ DR Q + ++ ++ E F P P P E
Sbjct: 5 LTKPLVIFDLEATGLDLVNDRIIQISFIKAYPDGKE--ERENIFINPGK---PIPSEVTQ 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI+ + V EA ++ + + G+N+ RFD F R D
Sbjct: 60 LTGIS-----DEDVAEAPTFKQKAKELADKFSGCDFAGFNSNRFDVPMLAEEFLRAGVD 113
>gi|320352856|ref|YP_004194195.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
propionicus DSM 2032]
gi|320121358|gb|ADW16904.1| Exonuclease RNase T and DNA polymerase III [Desulfobulbus
propionicus DSM 2032]
Length = 181
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ V D E G + D+ + A V D E + V ++ L
Sbjct: 4 NSNLVWIDLEMTGLNPFTDKILEVATVVTDSHLEILADGPVIAIHQPEEVL 54
>gi|320332653|ref|YP_004169364.1| DNA polymerase III subunit epsilon [Deinococcus maricopensis DSM
21211]
gi|319753942|gb|ADV65699.1| DNA polymerase III, epsilon subunit [Deinococcus maricopensis DSM
21211]
Length = 174
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 44/199 (22%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRV-------DRQWEKIESTEVFFCKPADDYLPDPEA 57
+V++D ET G D + +R+ D + + + E + Y+
Sbjct: 3 YVVFDLETTGLSPERDAIVEIGAIRIRNGEVLEDDTFHTLVNPE----RDIPWYVS---- 54
Query: 58 VFITGITPQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ GI A + EA + F T + +N FD + R R
Sbjct: 55 -RVHGIRNAHVASAPRITEA-----LPAFLQYAGTTPVVAHNAAFDTGFIRAAAARQGL- 107
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNA 174
W ++ + + AF + S KL LA G+ E
Sbjct: 108 ----EWRPQR---EICTLQLSRRAFPRE-----------KSHKLDALAQRLGLLQEARGL 149
Query: 175 HDAKADVYATL-ALVWLIR 192
H A AD T A L+R
Sbjct: 150 HSAHADARLTAHAFAHLLR 168
>gi|149190662|ref|ZP_01868930.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
gi|148835545|gb|EDL52514.1| DNA polymerase III subunit epsilon [Vibrio shilonii AK1]
Length = 176
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 33/195 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-----FITGI 63
D ET D + A + + I++ + P + L P+++ I I
Sbjct: 2 DCETTSLDPS------VAEIVTIAATKIIDN-RIITSDPFEVRLSAPKSLGEDSVKIHHI 54
Query: 64 TPQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
T + L+ G+ E + + F + P ++GY+ IR+D ++
Sbjct: 55 THDE-LKHGISEKQAMSALLNFIGNRP---LVGYH-IRYDKKILDRAAKKHLGFPLPNE- 108
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++ ++ ++ +G L+ + I + + HDA D
Sbjct: 109 -----------LIEVSQIYNDKLLK--LLPNGYFDLSLEAICRHLQIPNYHKHDALEDAK 155
Query: 183 -ATLALVWLIREKKP 196
A + + L R P
Sbjct: 156 AAAMVYLKLTRGSLP 170
>gi|294677643|ref|YP_003578258.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
capsulatus SB 1003]
gi|6014992|sp|O68045|DPO3E_RHOCA RecName: Full=DNA polymerase III subunit epsilon-like protein
gi|3128279|gb|AAC16131.1| DNA polymerase III alpha chain [Rhodobacter capsulatus SB 1003]
gi|294476463|gb|ADE85851.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
1003]
Length = 704
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 57/190 (30%), Gaps = 37/190 (19%)
Query: 4 HFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFIT 61
FV++D ET G D Q A VR+ P P P A +
Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGR---PIPAASTAVH 565
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IFYRNFYDSY 118
GIT + + AE RR H+F ++ +N FD + R + +NF +
Sbjct: 566 GIT-EAMVATAPAIAEVGRRFHKF--AEGAVLVAHNA-PFDLEFLRRKELLIGKNFDNPV 621
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHD 176
LD + S L L GI H
Sbjct: 622 -------------LDTVLLSAVV--------FGAAEGHS--LDALTHRLGITIPEEARHT 658
Query: 177 AKADVYATLA 186
A D AT
Sbjct: 659 ALGDTVATAE 668
>gi|315022360|gb|EFT35388.1| DNA Pol III Epsilon Chain [Riemerella anatipestifer RA-YM]
gi|325336512|gb|ADZ12786.1| DNA polymerase III, epsilon subunit related 3'-5' exonucleases
[Riemerella anatipestifer RA-GD]
Length = 254
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 27/183 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
I+D ET G +++ DR + ++V+ T+ + P +P A + GI+
Sbjct: 9 LCIFDLETTGTNISKDRIVEICILKVNPDAS--RETKTWLVNPEMH-IPA-FATAVHGIS 64
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ ++D E + +I + S + G+N+ RFD R D
Sbjct: 65 -DEDVKDAPTLKEIAPKIMEMIS--GADLGGFNSNRFDVPLLAEEMLRAGVDFDL----- 116
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
S+ L+D + P + + + L+D AH A+AD AT
Sbjct: 117 --SKMKLVDAQVIFHKMEPRNLSAAYQFYCNKT--LED-----------AHSAEADTLAT 161
Query: 185 LAL 187
+
Sbjct: 162 FEV 164
>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
12442]
gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
12442]
Length = 315
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVR 29
+T +V+ D+ET G + DR Q A VR
Sbjct: 6 LTGDYVVIDFETTGFNPYNDRIIQVAAVR 34
>gi|195651097|gb|ACG45016.1| oligoribonuclease [Zea mays]
Length = 249
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 39/198 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCKPADDYLPD-PEAVFIT- 61
V D E G D+ DR + A + D + ++IE ++ + + D L + E
Sbjct: 70 LVWIDLEMTGLDITKDRILEIACIITDGKLTKQIEGPDLVISQ-SKDCLDNMDEWCKTHH 128
Query: 62 ---GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIG---YNNIRFDDYYSRNIFYRNFY 115
G+T ++ L+ + E + ++ F + + N + D +F + +
Sbjct: 129 AASGLT-ERVLQSELSEHDAEAKVLD-FVRKHINSVTPLLAGNSVYVD----FLFLKKYM 182
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-PSRDDGATSFKLQDLALANGIEHVNA 174
+ + D+ +M I+W P
Sbjct: 183 PQLAAVFSH--VIVDVSSIMALC-------IRWYPKERKQTP-------------RKQKT 220
Query: 175 HDAKADVYATLALVWLIR 192
H A D+ ++A + +
Sbjct: 221 HRAMDDIKESIAELKYYK 238
>gi|190337683|gb|AAI63799.1| Lamin A [Danio rerio]
gi|190337691|gb|AAI63807.1| Lamin A [Danio rerio]
Length = 659
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 33/179 (18%)
Query: 311 KEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ R ++ + E+ L+ + +L + + +S+D G
Sbjct: 93 AKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALG-- 150
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSD--RRLP-ELFFRYRARNFPHTLSEK------- 415
R + + QL+ L +D ++L E+ R A N TL E+
Sbjct: 151 --EKRTLEVEVRDLKA-QLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNI 207
Query: 416 ------EKQDWLEHRKKMLTRSRIEEYKNKL-QSLSGEYKGDEGKEGLINALYEYLQWV 467
E + E R + R ++Y++KL +L+ E + + Y + +
Sbjct: 208 YSEELRESKRRYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRI------YKEEI 260
>gi|93006558|ref|YP_580995.1| oligoribonuclease [Psychrobacter cryohalolentis K5]
gi|92394236|gb|ABE75511.1| Exonuclease [Psychrobacter cryohalolentis K5]
Length = 195
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
V D E G D D + A V D + VF K +D
Sbjct: 20 LVWIDLEMTGLDTLNDEIIEIATVVTDEDLNVLAEGPVFAIKVSD 64
>gi|256832144|ref|YP_003160871.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
DSM 20603]
gi|256685675|gb|ACV08568.1| Exonuclease RNase T and DNA polymerase III [Jonesia denitrificans
DSM 20603]
Length = 222
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
T+ V D E G D+ D + A + D + ++ KP + L
Sbjct: 7 THPIVWIDCEMTGLDITQDALIEIAAIVTDSELNPLDEGIDLVIKPPTEAL 57
>gi|29831803|ref|NP_826437.1| oligoribonuclease [Streptomyces avermitilis MA-4680]
gi|37999370|sp|Q82CS8|ORN_STRAW RecName: Full=Oligoribonuclease
gi|29608920|dbj|BAC72972.1| putative 3'->5' exoribonuclease [Streptomyces avermitilis MA-4680]
Length = 200
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
M + V D E G ++ D + A + D + + +P D L PE V
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60
Query: 60 I----TGITPQKALRDGV--VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+G+ + A + EA+ + + P + N++ D +
Sbjct: 61 TMHTASGLLDELAAGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFL 113
>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
BAA-450]
Length = 246
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 57/191 (29%), Gaps = 37/191 (19%)
Query: 3 NHFVIYDYETFGRD----VALD--RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLP 53
N V+ D ET G + R + V E I F D
Sbjct: 10 NRIVVLDTETTGMNREGGPHYQGHRIIEIGAV------EIINRKLTGRHFHVYIKPDREI 63
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
P+AV + GIT + + E + + F + +N FD + F N
Sbjct: 64 QPDAVEVHGITDEFLVDK--PEYQDVHKEFLEFIKGAELVA--HNAPFDTGFMDYEF--N 117
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EH 171
D D+ D L + + I+ P + + L L GI H
Sbjct: 118 MLDPGIGKTDDYCKVTDTLAMAKKIF---------PGKRNN-----LDVLCDRYGIDNSH 163
Query: 172 VNAHDAKADVY 182
H A D
Sbjct: 164 RTLHGALLDAE 174
>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
Length = 1440
Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 29/194 (14%)
Query: 4 HFVIYDYETF-GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+V++D ET G D + A V++ + IE+ E F + + +TG
Sbjct: 413 TYVVFDVETTTGLSAVYDTIIELAAVKMHKG-NVIETFEQF---IDPGHPLSQTTINLTG 468
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + +R E E R+ + FS T ++ +N FD + + ++
Sbjct: 469 IT-DEMVRGSKSEEE-VLRMFKEFS-EGTILVAHNA-SFDMGFLNTSYGKHGIPEAA--- 521
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N ++D + P S +L L+ G+ H A D
Sbjct: 522 -NP-----VIDTLELSRFLYPH----------FKSHRLNTLSKKFGVNLEQHHRAIYDSE 565
Query: 183 ATLALVWL-IREKK 195
+T L W+ ++E K
Sbjct: 566 STGHLCWIFLKEAK 579
>gi|288818861|ref|YP_003433209.1| exonuclease [Hydrogenobacter thermophilus TK-6]
gi|288788261|dbj|BAI70008.1| exonuclease [Hydrogenobacter thermophilus TK-6]
gi|308752448|gb|ADO45931.1| Exonuclease RNase T and DNA polymerase III [Hydrogenobacter
thermophilus TK-6]
Length = 216
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 30/191 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV+ D ET G D+ D P ++V + I+ ++ F+ P ++ + G
Sbjct: 40 TTFVVCDTETTGLDLKKDEPIAIGALKV-KDLC-IDLSQSFYRLIKPQTPPKRSSIEVHG 97
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
ITP D E E + FS + ++GY + D ++F +
Sbjct: 98 ITPSDL--DIAKEREEVSKEFLEFSR-GSLLVGY--FFYIDLVMLKKLLKSFCSVPFVPY 152
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D+LD+ + + S L ++ + + H A D Y
Sbjct: 153 -----SLDVLDL---------------YKSEKHIS--LDEMLSLFDLPSSSHHSALEDAY 190
Query: 183 AT-LALVWLIR 192
T L + LI+
Sbjct: 191 MTALVFLKLIK 201
>gi|260467189|ref|ZP_05813366.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
WSM2075]
gi|259029042|gb|EEW30341.1| DNA polymerase III, epsilon subunit [Mesorhizobium opportunistum
WSM2075]
Length = 241
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G D DR + GV + ++ T + P + EA + GI+
Sbjct: 4 IIFDTETTGLDSRDDRVIELGGVELVNRF-PTGRTFHHYINPQGRAI-HAEAQAVHGISA 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
F+ + ++ + + + +N FD + F R +
Sbjct: 62 ADLAGK----PTFAEIVEEWLAFTDGAKLVAHNATFDIGFLNVEFGRLGHPVI 110
>gi|239941451|ref|ZP_04693388.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
gi|239987915|ref|ZP_04708579.1| oligoribonuclease [Streptomyces roseosporus NRRL 11379]
gi|291444893|ref|ZP_06584283.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
gi|291347840|gb|EFE74744.1| oligoribonuclease [Streptomyces roseosporus NRRL 15998]
Length = 201
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G +A D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAAL 52
>gi|294658997|ref|XP_461325.2| DEHA2F22594p [Debaryomyces hansenii CBS767]
gi|202953536|emb|CAG89730.2| DEHA2F22594p [Debaryomyces hansenii]
Length = 295
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 24/179 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYL-PD 54
V D E G +V D + + D E I+ + + +
Sbjct: 90 LVWIDCEMTGLNVFQDHIIEICCIITDGNLEIIDEKGFESTVYQPKEVLDGMNEWCVNQH 149
Query: 55 PEAVFITGI--TPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
++ I PQ L E E+ ++ + PN I+ N+I D ++ F
Sbjct: 150 GKSGLTAKILENPQCELSKIEDELLEYIKQ----YVQPNKGIMAGNSIHMDKFFMMREFP 205
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+ + D+ +M Y +P+ ++ + G + + L N ++
Sbjct: 206 KIIDYLHYR-------LIDVSSIMEVGYRHNPELMKLFPKKQGNHTARSDILESINQLK 257
>gi|295836748|ref|ZP_06823681.1| oligoribonuclease [Streptomyces sp. SPB74]
gi|197697620|gb|EDY44553.1| oligoribonuclease [Streptomyces sp. SPB74]
Length = 198
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G +A D + A + D + + +P + L
Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPGEAL 52
>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
Length = 1442
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 32/194 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC--KPADDYLPDPEAVFIT 61
+V++D ET G D + A V++ + E +++ E F +P + + + +T
Sbjct: 426 TYVVFDVETTGLSAVYDTIIEIAAVKI-QDGEVVDTFERFANPGRPLSNTI-----IELT 479
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT L+D +E + +++ ++ +N FD + +
Sbjct: 480 HIT-DDMLKDAPDISEVLKEYNEWI---GDAVLVAHNASFDIGFLNVGLKKAGLP----- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ N ++D + PD +++L LA +E H A D
Sbjct: 531 -KSNNP---VIDTLELGRFLYPD----------FKNYRLNTLAKKFNVELTQHHRAIYDT 576
Query: 182 YATLAL-VWLIREK 194
AT + + ++++
Sbjct: 577 EATGQIFLKMLKDA 590
>gi|218289182|ref|ZP_03493418.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
acidocaldarius LAA1]
gi|218240765|gb|EED07944.1| Exonuclease RNase T and DNA polymerase III [Alicyclobacillus
acidocaldarius LAA1]
Length = 952
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 37/195 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVD-----RQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
D+ET G + + +RV + + E +P D + +TG+
Sbjct: 7 DFETTGLEPERAEILEIGALRVRGGEIVDTFHTLVRPE----RPIPDEI-----TRLTGL 57
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + E E R F+ +T + G++ F+ + R+ R
Sbjct: 58 S-DTDVAGAPSEREALMR-FATFAG-DTPMAGHH-WAFERSFLRDRASRYGLP-----LQ 108
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
G D L + +P + S +L+ LA + +H A AD +
Sbjct: 109 PG----DGLCTLNLARILAPRLM----------SHRLEYLARRLCLRAEISHRALADAHT 154
Query: 184 TLALVWLIREKKPKL 198
L+ + K +L
Sbjct: 155 AHQLLMRLENKARRL 169
>gi|254384702|ref|ZP_05000040.1| oligoribonuclease [Streptomyces sp. Mg1]
gi|194343585|gb|EDX24551.1| oligoribonuclease [Streptomyces sp. Mg1]
Length = 200
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 7/109 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---PDPEA 57
M + V D E G + D + A + D + + +P D L PD
Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDTALETMPDVVR 60
Query: 58 VFITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
T L G EA+ + + P + N++ D
Sbjct: 61 AMHTASGLLDELAGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTD 109
>gi|23308641|ref|NP_694503.1| prelamin-A/C [Danio rerio]
gi|16660150|gb|AAL27547.1|AF397016_1 nuclear lamin A [Danio rerio]
Length = 659
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 33/179 (18%)
Query: 311 KEHFERWGIDHKRCLENLTLLRQQ-----TNLRDRFKAIYNKPYTSSSQDVDSQLYDGFF 365
+ R ++ + E+ L+ + +L + + +S+D G
Sbjct: 93 AKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALG-- 150
Query: 366 ADVDRQIMDRILRTAPEQLSTLNLPFSD--RRLP-ELFFRYRARNFPHTLSEK------- 415
R + + QL+ L +D ++L E+ R A N TL E+
Sbjct: 151 --EKRTLEVEVRDLKA-QLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNI 207
Query: 416 ------EKQDWLEHRKKMLTRSRIEEYKNKL-QSLSGEYKGDEGKEGLINALYEYLQWV 467
E + E R + R ++Y++KL +L+ E + + Y + +
Sbjct: 208 YSEELRESKRRYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRI------YKEEI 260
>gi|238782582|ref|ZP_04626613.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
gi|238796368|ref|ZP_04639877.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
gi|238716509|gb|EEQ08490.1| Ribonuclease T [Yersinia bercovieri ATCC 43970]
gi|238719813|gb|EEQ11620.1| Ribonuclease T [Yersinia mollaretii ATCC 43969]
Length = 226
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F +P + PEA+ GI P
Sbjct: 34 DVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACLT-----AGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D T+ L
Sbjct: 192 HSALYD---TMQTAKLF 205
>gi|297194244|ref|ZP_06911642.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486]
gi|197720537|gb|EDY64445.1| oligoribonuclease [Streptomyces pristinaespiralis ATCC 25486]
Length = 200
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVF 59
M + V D E G + D + A + D + + +P D L PE V
Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVR 60
Query: 60 ITGITPQKA--LRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFD 102
T L DG A+ + I + P + N++ D
Sbjct: 61 QMHTTSGLLDVLADGKTLADAEEQVLSYIREHVKEPGKAPLCGNSVGTD 109
>gi|194017045|ref|ZP_03055658.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
pumilus ATCC 7061]
gi|194011651|gb|EDW21220.1| DnaQ family exonuclease/DinG family helicase, putative [Bacillus
pumilus ATCC 7061]
Length = 930
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 45/199 (22%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPA---DDYLPDPEAVFI 60
FV+ D ET G D+ Q A V ++ +I + P ++ +
Sbjct: 6 FVVVDIETTGNSPKKGDKIIQIAAVVIENG--QIVERYSKYVNPGKAIPGFIEQ-----L 58
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-----DYYSRNIFYRNFY 115
TGI Q + D V + ++ ++ + +N + FD D +N
Sbjct: 59 TGIQ-QHMVDDAVFFEDIAQEVYDLIQ--GAYFVAHN-VHFDLNFLNDEL--KACGKNEL 112
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
D +D + P+ +G +KL +L+ + H + H
Sbjct: 113 DVLA------------IDTVEISRILYPEL-------EG---YKLTELSEELMLPHDHPH 150
Query: 176 DAKADVYAT-LALVWLIRE 193
A +D T + + L+ +
Sbjct: 151 RADSDAEVTAMLFLTLLHQ 169
>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
Length = 244
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + + P D DP A+ + G+T +
Sbjct: 7 DTETTGLNPRTGDRLIEIGCVEL-LNRRLTGNNLHIYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE +I F I +N FD + F R +
Sbjct: 64 LRDKPKF-AEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFT 111
>gi|295704398|ref|YP_003597473.1| exonuclease family protein [Bacillus megaterium DSM 319]
gi|294802057|gb|ADF39123.1| exonuclease family protein [Bacillus megaterium DSM 319]
Length = 197
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 68/198 (34%), Gaps = 49/198 (24%)
Query: 9 DYETFGRDVALDRPAQFA-GVR-----VDRQWEKIESTEVFFCKPADDYLPD----PEAV 58
D ET G + A V + +E E F +P P
Sbjct: 13 DVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFN-------MPSTPIFPYIT 65
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGIT + + +++ + + I +N FD R+ + +
Sbjct: 66 NLTGITNEMVKNKTLD----DKKVESLLTSVSAIIA--HNASFD----RSFLLKRY--PS 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ S MRA+ +W ++ G + KL L + IE +AH A
Sbjct: 114 LSNQKWHCS-------MRAV--------KW--KEYGFPNKKLTTLLDHHNIEREHAHRAM 156
Query: 179 ADVYATLALVWLIREKKP 196
DV T+ L+R++ P
Sbjct: 157 DDVKGTID---LLRQQNP 171
>gi|239928182|ref|ZP_04685135.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
gi|291436512|ref|ZP_06575902.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
gi|291339407|gb|EFE66363.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
Length = 238
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D+ DR A VR++ + +A I GI +
Sbjct: 12 FDLETTGTDIETDRIVTAAVVRLEPDGAVSAERTWL---LDPGVVIPEQAAAIHGIPTEH 68
Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
A GV I + + T ++ N R+D R +S
Sbjct: 69 ARAHGVPAPRAIEEITRAVAEVLRAGTPLV-VMNARYDLSLLDRECRRYGLESL 121
>gi|238762495|ref|ZP_04623465.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
gi|238699140|gb|EEP91887.1| Ribonuclease T [Yersinia kristensenii ATCC 33638]
Length = 226
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 57/197 (28%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + W + T F +P + PEA+ GI P
Sbjct: 34 DVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + II +N FD + R RN
Sbjct: 94 SNPLRGAVSEHDALHAIFKAVRKGLKDKGCNRAIIVAHNAHFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACLT-----AGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D T+ L
Sbjct: 192 HSALYD---TMQTAKLF 205
>gi|227832929|ref|YP_002834636.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
ATCC 700975]
gi|227453945|gb|ACP32698.1| DNA polymerase III, epsilon subunit [Corynebacterium aurimucosum
ATCC 700975]
Length = 233
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET R A VR+D +++ E+ +P+ EA I GIT +
Sbjct: 21 FDLETTSVKPKEARIVTSALVRIDG--REVDKREMLA---DPGVEIPE-EAAKIHGITTE 74
Query: 67 KALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
KA +G E I+Q + T I+ YN +D R
Sbjct: 75 KARAEGRPHEEVLKETVDSIYQAWDEGLTLIV-YNA-AYDLSVLR 117
>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
violaceum ATCC 12472]
gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
violaceum ATCC 12472]
Length = 239
Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEV-----FFCKPADDYLPDPEAVFITG 62
D ET G D R +FAG E + + P + DPEA + G
Sbjct: 7 DTETTGLDPQQGHRIIEFAG------LEMVGRKLTGKHLHLYIHPEREI--DPEAQRVHG 58
Query: 63 ITPQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I+ + V F++ H+ F II +N FD + F + +
Sbjct: 59 ISLEFLAGKPV----FAKVAHEIADFLRDAELII--HNAPFDVGFLNAEFAKAGIEPV 110
>gi|311033291|ref|ZP_07711381.1| Exonuclease [Bacillus sp. m3-13]
Length = 216
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 24/209 (11%)
Query: 5 FVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F ++D ET G +VA DR + V++ + + I+++ + +P E + +T I
Sbjct: 29 FTVFDTETTGFNVARDDRLIELGAVKI-KNLQVIDNSAYQTYINPNRQIPR-EIIELTSI 86
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T Q+ + E ++ + + C +G+ + FD + RN W
Sbjct: 87 T-QEQTDEAPQALEAITKLTNMANQTSVCYVGH-YLAFDMQAIQAELKRNNLK-----WK 139
Query: 124 NGNS--RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
N S DL+ + Y ++ +RD G + H DA
Sbjct: 140 NPKSLDTLDLIGYIAPSYDMRD--LEKYARDFGTRIY----------QRHSALGDALTTA 187
Query: 182 YATLALVWLIREKKPKLFEYLYDYRNKNQ 210
Y L+ L +++ K + L +
Sbjct: 188 YLFTELLQLSQDRGLKTWGDLLKIKGSQN 216
>gi|302519905|ref|ZP_07272247.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
gi|302428800|gb|EFL00616.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
Length = 270
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 23/116 (19%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFIT 61
+D ET G DV DR A + D++ DP A +
Sbjct: 12 FDLETSGVDVEADRIVTAAAYGLGG-----GEPVE-----PHDWMLDPGVEIPAGATAVH 61
Query: 62 GITPQKALRDGVVEAEFSRRI---HQFFSVPNTCIIGYNN----IRFDDYYSRNIF 110
GIT +A G I ++ ++G+N D R
Sbjct: 62 GITTDEARAKGEPAPGGIDHISDVLAEYARAGVAVVGHNVPYDFTLLDRECRRYEL 117
>gi|299472855|emb|CBN80424.1| EsV-1-126 [Ectocarpus siliculosus]
Length = 206
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 61/195 (31%), Gaps = 27/195 (13%)
Query: 6 VIYDYETFGRDVALDRP---AQFAGVRVDRQWEKIESTEVFFCK--------PADDYLPD 54
+ +D ET G P Q+ RV + + + + ADD +
Sbjct: 4 LFFDVETTGLPPRKANPETFEQYDSCRVVSIAWVLRDQKTVYSQRYSVTDPGIADDNI-- 61
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
A F+ GI+ R G + + + + +N+ FD +R
Sbjct: 62 -GAEFVHGISRAVMDRYGNAVSVVLSDFMADVNKSDKIVA--HNLDFDRSVVSAELFRMG 118
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYA-FSPDGIQWPSRDDGATSFKLQDLALAN-GIEHV 172
+ NS + + S +WP KL++L G
Sbjct: 119 SADDARRLMSFNSLCTMKSTTNLVRIPNSYGSYKWP---------KLEELHKFLFGHVFE 169
Query: 173 NAHDAKADVYATLAL 187
NAH A DV A +
Sbjct: 170 NAHHAMCDVDAMVKC 184
>gi|119945580|ref|YP_943260.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
gi|119864184|gb|ABM03661.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
Length = 204
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 59/196 (30%), Gaps = 52/196 (26%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE---A 57
+ VI+D+ET G + DRP + VR+ +E + P +
Sbjct: 4 AKNIVIFDFETTGLSPKMGDRPIEIGAVRIKNGL-LVERFQALM---------HPGIRIS 53
Query: 58 VFI---TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI-----RFDDYYSRNI 109
FI TGI+ + EA+ + F IG +N+ FD +
Sbjct: 54 SFIENFTGIS-----NKMLAEAKPCAEVMGRFCD----FIGSDNLVAHNASFDKRFLDAE 104
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
+R + S ++ A + KL L I
Sbjct: 105 LHR-----ISRGYSGQISC----SMLLARRVLRDA-----------PNHKLGTLVDYLNI 144
Query: 170 EHVNA-HDAKADVYAT 184
+ H A D T
Sbjct: 145 QTEGVYHRALFDSEMT 160
>gi|226942744|ref|YP_002797817.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
gi|226717671|gb|ACO76842.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
Length = 240
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV+ D ET G +V D V ++ I+ + F C E+V I GI
Sbjct: 44 FVVLDLETTGLNVERDVVLSIGAVLIEND--AIDLSRQFECTLRRRLKSVTESVLIHGIA 101
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
P AL G AE + +F C+ + F + + + R D +
Sbjct: 102 PS-ALAVGTAPAEA---LLRFMEYAGDCVF----LAFHAPFDQRMLGRALKDELGY---- 149
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWP 149
R LDV P+ + P
Sbjct: 150 -RLRHPFLDVADLAPMLFPEALVHP 173
>gi|292670219|ref|ZP_06603645.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292648171|gb|EFF66143.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 179
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 68/200 (34%), Gaps = 37/200 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +++D ET G D A V D + + P+A I
Sbjct: 1 MLEKILVFDTETTGFRSD-DEVLTLAVV--DGAGATVVDGMYAPVRKNAW----PDAEKI 53
Query: 61 TGITPQKALRDGVVEAEFSRR--IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I+P + +++ + + F+ P T ++GYN I FD R
Sbjct: 54 NRISPAMVVN---CPPILAQQAELERMFNDPETLLVGYN-IEFDIRLLAQSGIRI----- 104
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL-ANGIEHV----N 173
N N DVM A F + P G ++ LA A+ +
Sbjct: 105 ----QNPNRH----DVMLAFSEFR----KVPDARRGG--YRWWKLAECADYYRYDWGTTK 150
Query: 174 AHDAKADVYATLALVWLIRE 193
AH A AD ATL ++E
Sbjct: 151 AHGALADTLATLFCYQKMKE 170
>gi|262273022|ref|ZP_06050841.1| oligoribonuclease [Grimontia hollisae CIP 101886]
gi|262222932|gb|EEY74238.1| oligoribonuclease [Grimontia hollisae CIP 101886]
Length = 181
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 36/200 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFIT 61
+ + D E G D + + + A + D + + + V +D+ L E T
Sbjct: 6 KNLIWIDLEMTGLDPEVHKVIEIATIVTDAELKVLAEGPVLAIHQSDEELAKMDEWCTKT 65
Query: 62 GI---TPQKALRDGVVEAEFSRRIHQFFSVPNTCII----GYNNIRFDDYYSRNIFYRNF 114
++ + EA+ + F + G N++ D R Y++
Sbjct: 66 HTRSGLVERVKESTINEAQAVKETIAFLQEWVPAGVSPICG-NSVGQD----RRFLYKHM 120
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ D+ + + + PD + G + A
Sbjct: 121 -PDLERFFHY--RTVDVSTIKELVRRWQPDVLS--------------------GFKKQGA 157
Query: 175 HDAKADVYATLALVWLIREK 194
H A D+ ++ + R K
Sbjct: 158 HLALDDIRESIEELRYYRSK 177
>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma
citri]
Length = 1453
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T +VI+D ET G D +F V +D ++ +T
Sbjct: 407 TAKYVIFDLETTGLSSGYDEIIEFGAVIMDG---ISGERQIINHLFKPSVKLSSFTTELT 463
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFS 87
GIT + L D E +I ++F
Sbjct: 464 GIT-DELLADKPTFIESIDQILEYFK 488
>gi|302521659|ref|ZP_07274001.1| oligoribonuclease [Streptomyces sp. SPB78]
gi|318057630|ref|ZP_07976353.1| oligoribonuclease [Streptomyces sp. SA3_actG]
gi|318077542|ref|ZP_07984874.1| oligoribonuclease [Streptomyces sp. SA3_actF]
gi|333024701|ref|ZP_08452765.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
gi|302430554|gb|EFL02370.1| oligoribonuclease [Streptomyces sp. SPB78]
gi|332744553|gb|EGJ74994.1| putative oligoribonuclease [Streptomyces sp. Tu6071]
Length = 198
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G +A D + A + D + + +P + L
Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNILGDGVDIVIRPPEQAL 52
>gi|229780998|ref|YP_001103540.2| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|291007403|ref|ZP_06565376.1| oligoribonuclease [Saccharopolyspora erythraea NRRL 2338]
Length = 221
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D + A + D +
Sbjct: 1 MNDRLVWIDCEMTGLDLGKDALIEIAALVTDADLNILGE 39
>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
Length = 1438
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + + +T IT
Sbjct: 421 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 476
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E ++ F+ C +N++FD + R
Sbjct: 477 -DEMVSAADDEDVVIKQFQDFYGDRPLCG---HNVQFDVGFVNAALRRAGLSEI------ 526
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L LA + + H A D AT
Sbjct: 527 ---TQPVVDTLEVSRLLHP--------EQNRHT--LDSLAKKYNVSLEHHHRANQDAEAT 573
>gi|42522865|ref|NP_968245.1| oligoribonuclease [Bdellovibrio bacteriovorus HD100]
gi|39574061|emb|CAE79238.1| Oligoribonuclease [Bdellovibrio bacteriovorus HD100]
Length = 175
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP 47
N D E G DV + + A + D ++++E+ E +P
Sbjct: 2 NKLFWIDMEMTGLDVEKEVIIEVAAIVTDLNFKELETFETVVKQP 46
>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
Length = 1436
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 474
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E ++ F+ C +N++FD + R
Sbjct: 475 -DEMVSAADDEDVVIKQFQDFYGDRPLCG---HNVQFDVGFVNAALRRAGLSEI------ 524
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L LA + + H A D AT
Sbjct: 525 ---TQPVVDTLEVSRLLHP--------EQNRHT--LDSLAKKYNVSLEHHHRANQDAEAT 571
>gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804]
gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii]
Length = 241
Score = 42.1 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFIT 61
+I+D ET G D + R + V E + D DPEA+ +
Sbjct: 4 IIFDTETTGLDPSQGHRIVEIGCV------EIVNRVVTGNHLHIYLNPDRDSDPEALAVH 57
Query: 62 GITPQKALRD 71
G+T +
Sbjct: 58 GLTTEFLADK 67
>gi|294678385|ref|YP_003579000.1| PAS domain/exonuclease domain-containing protein [Rhodobacter
capsulatus SB 1003]
gi|294477205|gb|ADE86593.1| PAS domain/exonuclease domain protein [Rhodobacter capsulatus SB
1003]
Length = 704
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 42/190 (22%), Positives = 57/190 (30%), Gaps = 37/190 (19%)
Query: 4 HFVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFIT 61
FV++D ET G D Q A VR+ P P P A +
Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGR---PIPAASTAVH 565
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN---IFYRNFYDSY 118
GIT + + AE RR H+F ++ +N FD + R + +NF +
Sbjct: 566 GIT-EAMVATAPAIAEVGRRFHKF--AEGAVLVAHNA-PFDLEFLRRKELLIGKNFDNPV 621
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHD 176
LD + S L L GI H
Sbjct: 622 -------------LDTVLLSAVV--------FGAAEGHS--LDALTHRLGITIPEEARHT 658
Query: 177 AKADVYATLA 186
A D AT
Sbjct: 659 ALGDTVATAE 668
>gi|289706257|ref|ZP_06502619.1| exonuclease [Micrococcus luteus SK58]
gi|289556980|gb|EFD50309.1| exonuclease [Micrococcus luteus SK58]
Length = 208
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 23/120 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59
V D E G +D + A + D + ++ + P A+
Sbjct: 14 LVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIR------PSAAALEQMDPF 67
Query: 60 ------ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYS-RNI 109
+G+ P+ L +G+ + + R+ ++ + G N + D + R +
Sbjct: 68 VRDMHTTSGLLPE--LAEGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLFLARYM 125
>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
Length = 1436
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 27/180 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D + V++ + E IE + F + + + +T IT
Sbjct: 419 FVIFDVETTGLSSVYDTIIEIGAVKM-KNGEVIERFDKF---INPHHPLSEQTINLTSIT 474
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E ++ F+ C +N++FD + R
Sbjct: 475 -DEMVSAADDEDVVIKQFQDFYGDRPLCG---HNVQFDVGFVNAALRRAGLSEI------ 524
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D + P + + L LA + + H A D AT
Sbjct: 525 ---TQPVVDTLEVSRLLHP--------EQNRHT--LDSLAKKYNVSLEHHHRANQDAEAT 571
>gi|254571599|ref|XP_002492909.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris
GS115]
gi|238032707|emb|CAY70730.1| RNA exonuclease, required for U4 snRNA maturation [Pichia pastoris
GS115]
Length = 213
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 17/124 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE---STEVFF-----CKPADDYLPDPE 56
V D E G D+ D + + D+ E ++ + + + K + +
Sbjct: 38 IVWIDCEMTGLDIYNDHIVEICCIITDQNLEVVDEGYESVIHYDNDVMSKMNEWCIEHHG 97
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD--------YYSRN 108
+T + VE+E I Q PNT ++ N+I D
Sbjct: 98 TSGLTKKVLESTKTLPQVESELLSYISQHIE-PNTGVMAGNSIHMDKFFMYREFPKVIDY 156
Query: 109 IFYR 112
+FYR
Sbjct: 157 LFYR 160
>gi|152970543|ref|YP_001335652.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|330015632|ref|ZP_08308213.1| ribonuclease T [Klebsiella sp. MS 92-3]
gi|166228567|sp|A6TA01|RNT_KLEP7 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|150955392|gb|ABR77422.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|328531231|gb|EGF58076.1| ribonuclease T [Klebsiella sp. MS 92-3]
Length = 215
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 59/205 (28%), Gaps = 38/205 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + + T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEHGWLMP-DETLHFHVEPFEGANLQPEALAFNGIN 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E + I + + I+ +N FD ++ R RN
Sbjct: 82 PHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACIAAGMPFDG-----------------AQ 179
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D T L I + +L
Sbjct: 180 AHSALYDTEQTAQLFCEIVNRWKRL 204
>gi|261406087|ref|YP_003242328.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
Y412MC10]
gi|261282550|gb|ACX64521.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus sp.
Y412MC10]
Length = 958
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 35/184 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFI 60
F + D+ET G + + D Q IE V+ P +
Sbjct: 3 FAVLDFETTG-NQSADEIIQVG-------LAIIEEDRSISRVYGTYVNPGIPIPPFITGL 54
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ +E E + ++G+N + FD + +N R Y +
Sbjct: 55 TGISDSDVADAPSLE-EMMMELVPMLDD--VVLVGHN-VAFDFNFLQNALDRCGYLPF-- 108
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+LD M + I +P S++L ++ G+EH H A +D
Sbjct: 109 -------SGRILDTM---HFLK---ICFP----SLPSYQLGMVSSHFGLEHDRPHQADSD 151
Query: 181 VYAT 184
AT
Sbjct: 152 ALAT 155
>gi|330816255|ref|YP_004359960.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
Length = 240
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 54/178 (30%), Gaps = 33/178 (18%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARTGDRIIEIGCVEM-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+F+ H F II +N FD + F R
Sbjct: 64 LSDK----PKFAEVAHAICDFVRGAELII--HNAPFDIGFIDAEFERVGLPPL------- 110
Query: 126 NSRWD-LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
N D ++D + P S L L GI H H A D
Sbjct: 111 NQHCDGVIDTLVQAKQMFPG---------KRNS--LDALCDRFGISNAHRTLHGALLD 157
>gi|322373090|ref|ZP_08047626.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. C150]
gi|321278132|gb|EFX55201.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. C150]
Length = 828
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 65/187 (34%), Gaps = 37/187 (19%)
Query: 2 TNHFVIYDYE-TFGRDVALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEA 57
TN + I D E TF +A Q G+ + + + I+ K D +
Sbjct: 6 TNKYAIVDLEATFASSMA--SIIQV-GIVIMQNGQVIDEFASDVNPHQKLDDHII----- 57
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGIT Q+ L +E +R+I CI +N++FD + Y+
Sbjct: 58 -HLTGITDQQ-LAQAPDFSEIARKIFDLIED---CIFVAHNVKFDANLLSEALFMEGYE- 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ +D + F P +KL L+ ++ AH A
Sbjct: 112 -LRTPR--------VDTVELAQVFYPTL----------EHYKLSHLSKVLNLDLAQAHTA 152
Query: 178 KADVYAT 184
D AT
Sbjct: 153 IEDARAT 159
>gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group]
Length = 422
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 29/192 (15%)
Query: 3 NHFVIYDYET---FGRDVALDRPAQFAGV-RVDRQWEKIESTEVFFCKPAD-DYLPDPEA 57
+D ET +G +F + RQ ++ + +P+D + EA
Sbjct: 21 PEIAFFDVETSMPWGPRERRT-LLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVT--EA 77
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GIT + AL D + + IH G+N I FD R F
Sbjct: 78 LERKGIT-RGALEDAPPFCDVADNIHNVLH--GRIWAGHNIISFDSEIIREAF-----AE 129
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
S D L ++ + A + K+ +LA + H +
Sbjct: 130 IGRSPPEPKGMIDTLPLLTQTFGRR------------AGNMKMANLADYFNL-GPQIHRS 176
Query: 178 KADVYATLALVW 189
DV L ++
Sbjct: 177 LYDVRMNLDVLK 188
>gi|39996485|ref|NP_952436.1| exonuclease [Geobacter sulfurreducens PCA]
gi|39983365|gb|AAR34759.1| exonuclease [Geobacter sulfurreducens PCA]
gi|298505487|gb|ADI84210.1| 3'-to-5' exonuclease, putative [Geobacter sulfurreducens KN400]
Length = 181
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 34/114 (29%), Gaps = 27/114 (23%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFF---CKPADDYLPDPEAVFITGIT 64
D ET G DR + A V VD + + I GIT
Sbjct: 11 DVETTGLFPGYGDRVVEVAAVLVDEG-QIVSEFSSLIRVTKAIPRHV------SMIHGIT 63
Query: 65 PQKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ E +F T ++ +N RFD + R+ F R
Sbjct: 64 NDMLADQPLPEEVYPALGDFI----------GTALLVAHNARFDLAFLRHEFGR 107
>gi|77360378|ref|YP_339953.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
TAC125]
gi|76875289|emb|CAI86510.1| putative DNA polymerase III, epsilon subunit [Pseudoalteromonas
haloplanktis TAC125]
Length = 236
Score = 42.1 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 29/193 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
FV D+ET G D D V + + +CK + ++ P E++
Sbjct: 47 FVAMDFETTGLDSEADDIVSVGLV----PFNL----QRIYCKHSRHWVVQPRRNLHEESI 98
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
I GIT + +F+R I + + ++ Y I + N ++
Sbjct: 99 IIHGITHSEVDDA----PDFNRIIEPLLAALSGKVVVVHYAAIER--PFLNNALLLRLHE 152
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ + D+ G+ + S +L D + N H+
Sbjct: 153 GIEFALVD---TMDIEKRALTA----RQGLIGRLFNSKIGSLRLNDCRKRYSLPAYNNHN 205
Query: 177 AKADVYATLALVW 189
A D AT L+
Sbjct: 206 ALTDALATAELLQ 218
>gi|294499074|ref|YP_003562774.1| exonuclease family protein [Bacillus megaterium QM B1551]
gi|294349011|gb|ADE69340.1| exonuclease family protein [Bacillus megaterium QM B1551]
Length = 197
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 49/198 (24%)
Query: 9 DYETFGRDVALDRPAQFA-GVR-----VDRQWEKIESTEVFFCKPADDYLPD----PEAV 58
D ET G + A V + +E E F +P P
Sbjct: 13 DVETTGLSAQTCDIIELAIAVVSYDSSTGEIIDIVEEYEEFN-------MPSTPIFPYIT 65
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGIT + + +++ + + I +N FD R+ + +
Sbjct: 66 NLTGITNEMVKNKTLD----DKKVESLLTSVSAIIA--HNASFD----RSFLLKRY--PS 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++ S MRA+ +W ++ G + KL L + IE +AH A
Sbjct: 114 LFNQKWHCS-------MRAV--------KW--KEYGFPNKKLTTLLDHHNIEREHAHRAM 156
Query: 179 ADVYATLALVWLIREKKP 196
DV T+ L+R++ P
Sbjct: 157 DDVKGTID---LLRQQNP 171
>gi|294629494|ref|ZP_06708054.1| oligoribonuclease [Streptomyces sp. e14]
gi|292832827|gb|EFF91176.1| oligoribonuclease [Streptomyces sp. e14]
Length = 202
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G ++ D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAAL 52
>gi|332519635|ref|ZP_08396099.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
5H-3-7-4]
gi|332044194|gb|EGI80388.1| Exonuclease RNase T and DNA polymerase III [Lacinutrix algicola
5H-3-7-4]
Length = 398
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 26/150 (17%)
Query: 76 AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVM 135
E ++RI + CII +N +FD+ R F R ++ + L +
Sbjct: 9 YEVAKRIVEITEG---CIIVAHNAQFDNRILRTEFKRLGFE-FERET---------LCTV 55
Query: 136 RAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLI--RE 193
PD S+ L L + GI + H A D AT+ L L+ ++
Sbjct: 56 ELSKTLIPDL----------PSYSLGKLVRSLGIPVTDRHRASGDALATVKLFKLLLSKD 105
Query: 194 KKPKLFEYLYDYRNKNQLR-KLIDIQNMTP 222
+ + + + K QL KL+DI P
Sbjct: 106 IEKTIIQTFLRKQPKLQLEPKLVDIIAQMP 135
>gi|320159156|ref|YP_004191534.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
gi|319934468|gb|ADV89331.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
Length = 238
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 64/196 (32%), Gaps = 24/196 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ D+ET G D D+ V D E I + E+ I G+
Sbjct: 51 SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 108
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ + +E R + ++ ++ I F + F +
Sbjct: 109 TPQALEQGCSLEQGMMRLFERA---QGKVLLAHSAI------IEQGFLQTFAQQHFQLAK 159
Query: 124 NGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + + YA + +SF+L DL + ++H A +D
Sbjct: 160 LPCHFVDTLQIEKRFSYA---------GKSGQRSSFQLDDLRRCYHLPDYHSHSAASDA- 209
Query: 183 ATLALVWLIREKKPKL 198
LA L + KL
Sbjct: 210 --LACAELFIVQSKKL 223
>gi|52141929|ref|YP_084901.1| DNA polymerase III subunit epsilon [Bacillus cereus E33L]
gi|51975398|gb|AAU16948.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
Length = 315
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 40/186 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
++V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +
Sbjct: 9 NYVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----L 61
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT + +E F +H T +I +N FD + ++
Sbjct: 62 TGITNYRVSDAPTIEEVLPVFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP- 113
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 -----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNA 154
Query: 178 KADVYA 183
D
Sbjct: 155 FDDCIT 160
>gi|241759673|ref|ZP_04757773.1| DNA polymerase III subunit [Neisseria flavescens SK114]
gi|241319681|gb|EER56077.1| DNA polymerase III subunit [Neisseria flavescens SK114]
Length = 463
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 30/193 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + DR + A VR ++ V C+ +++ +T I +
Sbjct: 25 DLETTGGNSYQDRITEVALVRFEQGRTTHYEQLVNPCRSIPEFV-----ARLTEI-HDET 78
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+++ V A+ + + ++ +N+ RFD + R+ F R D S
Sbjct: 79 VKNAPVFADIAGDLLPLLQ--GAVVVAHNS-RFDYTFLRHEFARIHTDFAAPS------- 128
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
L ++ P+ S L + GI+ N H A DV A +
Sbjct: 129 ---LCTVQLSRRLYPEFY--------KHS--LDSIIERTGIQTANRHRAMTDVVALCDYL 175
Query: 189 WL-IREKKPKLFE 200
L + EK + ++
Sbjct: 176 ELSLAEKNHQQWD 188
>gi|51892851|ref|YP_075542.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856540|dbj|BAD40698.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 958
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 58/181 (32%), Gaps = 30/181 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-TG 62
FV D ET G DR + A VR + F + D P P+ + TG
Sbjct: 5 SFVAIDVETTGTSPEHDRLIEVAAVRFED-----GREIGCFSRLIDPGCPVPQRIQHLTG 59
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I P +E E + F +N FD + + F R WS
Sbjct: 60 IHPAMLAGKPRIE-EVVPDLASFLGDLPLVA---HNAPFDVAFLQAAFARAGRSLPNWS- 114
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+D ++ R + + +L LA G+ + H A+ D
Sbjct: 115 ------YDTAELARVALPLARNH-------------RLATLAELLGLPLEHHHRAEDDAR 155
Query: 183 A 183
A
Sbjct: 156 A 156
>gi|328791793|ref|XP_624063.2| PREDICTED: probable oligoribonuclease-like [Apis mellifera]
Length = 144
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKP 47
V D E G + D + A + D + E + +P
Sbjct: 9 IVWIDTELTGLQIETDTILEIACLITDEDLNIVSEEFNIVINQP 52
>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
Length = 1444
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
N +VI+D ET G D+ + + V++ + E + + F + + +T
Sbjct: 421 NTYVIFDVETTGLSAIYDKVIELSAVKM-KNGEVLARFDEF---IDPGFPLSEQTTNLTS 476
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + +R E E + F + T I G+N + FD + + R+ +
Sbjct: 477 IT-DEMVRGSKSEEEVFKMFKDFCA--GTIIAGHN-VSFDMGFMNTGYRRHQMEEI---- 528
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
++D + P+ ++L L+ + + H A D
Sbjct: 529 -----TEPVIDTLPLARFLYPN----------MRGYRLNTLSKKFKVALEHHHRANFDAE 573
Query: 183 ATLALV-WLIREKKPK 197
AT L+ +++ + +
Sbjct: 574 ATGHLLYKFLKDAEKR 589
>gi|148545634|ref|YP_001265736.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
gi|148509692|gb|ABQ76552.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
Length = 236
Score = 42.1 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 33/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D ET G + D+ V IE + F + + L P +V I G+
Sbjct: 45 DLETSGLNPNRDQVLSIGAV-------AIEDGAIDFAQQFERTLHRPLQKTNASVLIHGL 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P AL G AE + F + F + + + R ++
Sbjct: 98 GPS-ALAAGCDPAEALLDLLDFIGNSP-------VLAFHAPFDQRMLARALKETLGHRLQ 149
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ LDV +PD + R+ G L D G++ H A AD
Sbjct: 150 SM-----FLDVAELAPMLNPDTV---LREAG-----LDDWVARFGLQVEERHHASADAQV 196
Query: 184 TLALVWLIREK 194
T L ++ +
Sbjct: 197 TAELALILFSQ 207
>gi|260770593|ref|ZP_05879525.1| oligoribonuclease [Vibrio furnissii CIP 102972]
gi|260614423|gb|EEX39610.1| oligoribonuclease [Vibrio furnissii CIP 102972]
gi|315178350|gb|ADT85264.1| oligoribonuclease [Vibrio furnissii NCTC 11218]
Length = 181
Score = 42.1 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + + A + D Q +
Sbjct: 6 QNLIWIDLEMTGLDPETHKIIEIATIVTDSQLNILAE 42
>gi|296127268|ref|YP_003634520.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
12563]
gi|296019084|gb|ADG72321.1| DNA polymerase III, epsilon subunit [Brachyspira murdochii DSM
12563]
Length = 252
Score = 42.1 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 27/214 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++ I D ET G D+ + ++ ++I+ DY+P+ + + T I
Sbjct: 60 NYTIIDVETTGLKPREDKIIEIGAIKYRDN-KEIDYFSTL---VKVDYIPNFISSY-TNI 114
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T K +++ E ++ + F ++GYN + FD + + Y +
Sbjct: 115 T-NKMVKNAPRVDEAIKQFYDFVGD--DILVGYN-VPFDIKFLYDALYEVSNGELLLNN- 169
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D +DVM D +K +A I N H A D
Sbjct: 170 ------DFIDVMYIAKRVLKDLEN----------YKQVTVASYYNISIDNLHRAMGDCKL 213
Query: 184 TLALVWLIREKKPKLFEYLYDYRNKN-QLRKLID 216
A+ +++ + + + K +++ I+
Sbjct: 214 CSAIYECLQKDILEKWGAFNKFYKKYPKIKNKIE 247
>gi|38232702|ref|NP_938469.1| hypothetical protein DIP0068 [Corynebacterium diphtheriae NCTC
13129]
gi|38198960|emb|CAE48575.1| Hypothetical protein DIP0068 [Corynebacterium diphtheriae]
Length = 102
Score = 42.1 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T F + D T G + D + A VR D ++ ++S D AV T
Sbjct: 28 TPVFAVIDTGTTGFNKRYDHIIELAAVRADAYFKPVDSWHAL---LNPDT----NAVSTT 80
Query: 62 GITP 65
TP
Sbjct: 81 RGTP 84
>gi|309791196|ref|ZP_07685728.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
gi|308226758|gb|EFO80454.1| DNA polymerase III, epsilon subunit [Oscillochloris trichoides DG6]
Length = 272
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
V +D ET G D+ R + A +RV + + D L DPEA + G
Sbjct: 14 LVFFDLETTGLDLRAGHRVCELALLRVRGAAVE----DYLGSALRPDRLLDPEAAAVNGF 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
Q A G F+ + + + ++ +N+ FD + R
Sbjct: 70 --QDAELRGAP--RFASVAGRVQRMAHGAVLIAHNLPFDMAFLNAELARIGQPPLA 121
>gi|260942501|ref|XP_002615549.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC
42720]
gi|238850839|gb|EEQ40303.1| hypothetical protein CLUG_04431 [Clavispora lusitaniae ATCC
42720]
Length = 283
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D+A D + + D I+
Sbjct: 35 LVWIDCEMTGLDIAKDHIIEICCIITDGNLNIIDE 69
>gi|228477577|ref|ZP_04062210.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
salivarius SK126]
gi|228250721|gb|EEK09919.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
salivarius SK126]
Length = 828
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 37/187 (19%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE----A 57
TN + I D E + Q G+ + + + I+ A D P E
Sbjct: 6 TNKYAIVDLEATSAS-STASIIQV-GIVIMQNGQVIDEF-------ASDVNPHQELDDHI 56
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ +TGIT Q+ + +E +R I + CI +N++FD + ++
Sbjct: 57 IHLTGITDQQLAQAPDF-SEIARTIFELIED---CIFVAHNVKFDANLLAEALFMEGFE- 111
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ +D + F P +KL L+ ++ AH A
Sbjct: 112 -LRTPR--------VDTVELAQVFYPTL----------EQYKLSHLSKVLNLDLAQAHTA 152
Query: 178 KADVYAT 184
D AT
Sbjct: 153 IEDARAT 159
>gi|152990271|ref|YP_001355993.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
gi|151422132|dbj|BAF69636.1| DNA polymerase III, epsilon subunit [Nitratiruptor sp. SB155-2]
Length = 197
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 29/198 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ V D ET G D D A + V + + KP D +++ I
Sbjct: 22 DEIVFIDCETTGLDPKNDEILSIACLPVKKDKILLSKALYLELKPQKDI--SAQSIKIHH 79
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI---FYRNFYDSYR 119
+ L+ + E R+ + + N + GY + FD F+ + +
Sbjct: 80 LR-ACDLQGAMEPKEAIERV--LYFIKNRPVAGY-YVEFDVKMISKYTKKFFGFTLPNKQ 135
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
++V Y + I G K + + + AH+A
Sbjct: 136 ------------IEVSGLYYDYKQKAIP-----QGFIDLKFDTILKDLNLPKLKAHNALN 178
Query: 180 DVY--ATLALVWLIREKK 195
D A + L LI+ ++
Sbjct: 179 DTIMSAMIYL-KLIKRRQ 195
>gi|296112880|ref|YP_003626818.1| oligoribonuclease [Moraxella catarrhalis RH4]
gi|295920574|gb|ADG60925.1| oligoribonuclease [Moraxella catarrhalis RH4]
gi|326561112|gb|EGE11477.1| oligoribonuclease [Moraxella catarrhalis 7169]
gi|326564455|gb|EGE14682.1| oligoribonuclease [Moraxella catarrhalis 103P14B1]
gi|326564568|gb|EGE14793.1| oligoribonuclease [Moraxella catarrhalis 12P80B1]
gi|326564778|gb|EGE14990.1| oligoribonuclease [Moraxella catarrhalis 46P47B1]
gi|326567572|gb|EGE17687.1| oligoribonuclease [Moraxella catarrhalis BC1]
gi|326569420|gb|EGE19480.1| oligoribonuclease [Moraxella catarrhalis BC8]
gi|326571382|gb|EGE21397.1| oligoribonuclease [Moraxella catarrhalis BC7]
gi|326575336|gb|EGE25264.1| oligoribonuclease [Moraxella catarrhalis CO72]
gi|326576579|gb|EGE26486.1| oligoribonuclease [Moraxella catarrhalis 101P30B1]
gi|326577403|gb|EGE27287.1| oligoribonuclease [Moraxella catarrhalis O35E]
Length = 195
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ D E G D D + A + D + + V K +D L
Sbjct: 20 LIWIDLEMTGLDTQQDDIIEIATIVTDDELNILAEGPVLAIKVSDVVL 67
>gi|291280248|ref|YP_003497083.1| hypothetical protein DEFDS_1873 [Deferribacter desulfuricans SSM1]
gi|290754950|dbj|BAI81327.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 200
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 13/112 (11%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITG 62
F + D ET G R + A VR+D + F + P P +A I
Sbjct: 12 FTVVDTETTGLSPYKGARLVEIAAVRLDEGLNI--RLDRGFSTLINPKKPIPFQAYKIHK 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYR 112
I+ + +E + FS NT + +N FD + FY+
Sbjct: 70 ISDEMVKDAPTIE-----EVLPHFSKYVENTVFVAHNA-PFDFKFIDY-FYK 114
>gi|169634394|ref|YP_001708130.1| oligoribonuclease [Acinetobacter baumannii SDF]
gi|169797233|ref|YP_001715026.1| oligoribonuclease [Acinetobacter baumannii AYE]
gi|213155973|ref|YP_002318018.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
gi|215484674|ref|YP_002326909.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
gi|229577105|ref|YP_001083587.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
gi|239500755|ref|ZP_04660065.1| oligoribonuclease [Acinetobacter baumannii AB900]
gi|293610306|ref|ZP_06692607.1| oligoribonuclease [Acinetobacter sp. SH024]
gi|301346492|ref|ZP_07227233.1| oligoribonuclease [Acinetobacter baumannii AB056]
gi|301509982|ref|ZP_07235219.1| oligoribonuclease [Acinetobacter baumannii AB058]
gi|301594203|ref|ZP_07239211.1| oligoribonuclease [Acinetobacter baumannii AB059]
gi|332851262|ref|ZP_08433335.1| oligoribonuclease [Acinetobacter baumannii 6013150]
gi|332866131|ref|ZP_08436846.1| oligoribonuclease [Acinetobacter baumannii 6013113]
gi|332874063|ref|ZP_08441998.1| oligoribonuclease [Acinetobacter baumannii 6014059]
gi|169150160|emb|CAM88054.1| oligoribonuclease [Acinetobacter baumannii AYE]
gi|169153186|emb|CAP02276.1| oligoribonuclease [Acinetobacter baumannii]
gi|193076335|gb|ABO10985.2| oligoribonuclease [Acinetobacter baumannii ATCC 17978]
gi|213055133|gb|ACJ40035.1| oligoribonuclease Orn [Acinetobacter baumannii AB0057]
gi|213985933|gb|ACJ56232.1| Oligoribonuclease [Acinetobacter baumannii AB307-0294]
gi|292827538|gb|EFF85902.1| oligoribonuclease [Acinetobacter sp. SH024]
gi|322506755|gb|ADX02209.1| Oligoribonuclease [Acinetobacter baumannii 1656-2]
gi|323516626|gb|ADX91007.1| oligoribonuclease [Acinetobacter baumannii TCDC-AB0715]
gi|325124507|gb|ADY84030.1| oligoribonuclease [Acinetobacter calcoaceticus PHEA-2]
gi|332730142|gb|EGJ61469.1| oligoribonuclease [Acinetobacter baumannii 6013150]
gi|332734772|gb|EGJ65866.1| oligoribonuclease [Acinetobacter baumannii 6013113]
gi|332737804|gb|EGJ68696.1| oligoribonuclease [Acinetobacter baumannii 6014059]
Length = 188
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V D L
Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRIL 56
>gi|325271479|ref|ZP_08137997.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
gi|324103369|gb|EGC00698.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. TJI-51]
Length = 236
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 33/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D ET G + D+ V IE + F + + L P +V I G+
Sbjct: 45 DLETSGLNPNRDQVLSIGAV-------AIEDGAIDFAQQFERTLQRPLLKTNASVLIHGL 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P AL G AE + F + F + + + R +S +
Sbjct: 98 GPS-ALAAGCEPAEALLDLLDFIGDSP-------VLAFHAPFDQRMLARALKESLGYRLQ 149
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ LDV +PD + R+ G L D G++ H A AD
Sbjct: 150 SP-----FLDVAELAPMLNPDTV---LREAG-----LDDWVARFGLQVEERHHASADAQV 196
Query: 184 TLALVWLIREK 194
T LV ++ +
Sbjct: 197 TAELVLILFSQ 207
>gi|90409780|ref|ZP_01217797.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
gi|90329133|gb|EAS45390.1| hypothetical protein P3TCK_03416 [Photobacterium profundum 3TCK]
Length = 186
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 8/126 (6%)
Query: 3 NHFVIYDYE----TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
N V +D E GRD + +D +I + KP D +
Sbjct: 4 NRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEI-SEFCT 62
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI PQ ++G AE R + F + + + DD
Sbjct: 63 ELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGH---DDRILHAECAAKGLKVP 119
Query: 119 RWSWDN 124
+ N
Sbjct: 120 FTEYIN 125
>gi|21672814|ref|NP_660881.1| oligoribonuclease [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|25008877|sp|Q8K909|ORN_BUCAP RecName: Full=Oligoribonuclease
gi|21623465|gb|AAM68092.1| hypothetical oligoribonuclease [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 184
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G + + R + A V D + I
Sbjct: 5 NENLIWIDLEMTGLNSEIHRIIEIATVITDTKLNIISE 42
>gi|54301691|ref|YP_131684.1| hypothetical protein PBPRB0011 [Photobacterium profundum SS9]
gi|46915111|emb|CAG21884.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 191
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 8/126 (6%)
Query: 3 NHFVIYDYE----TFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
N V +D E GRD + +D +I + KP D +
Sbjct: 9 NRIVCFDLEMCCWNDGRDPKTGEIIEIGLAELDLDTGEIVRRTQHYVKPEHDEI-SEFCT 67
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI PQ ++G AE R + F + + + DD
Sbjct: 68 ELTGIKPQVIHKNGKPLAEILRSMESKFGGKHKIYAAWGH---DDRILHAECAAKGLKVP 124
Query: 119 RWSWDN 124
+ N
Sbjct: 125 FTEYIN 130
>gi|260903685|ref|ZP_05912007.1| 5'-3' exonuclease (including N-terminal domain of PolI)
[Brevibacterium linens BL2]
Length = 578
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITGITPQ 66
+D ET G D A R A V + V +P+P A + GIT +
Sbjct: 364 FDLETTGVDPATARIVTAAFVESAENARTWLADPGVE--------IPEP-ARAVHGITTE 414
Query: 67 KALRDGVVEAEFSRR---IHQFFSVPNTCIIGYN 97
A +G AE + ++G+N
Sbjct: 415 FAQANGAPVAEVVAELCTVLADLKAEGAVVVGHN 448
>gi|228940696|ref|ZP_04103259.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973614|ref|ZP_04134196.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980172|ref|ZP_04140486.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228779530|gb|EEM27783.1| DNA polymerase III alpha subunit [Bacillus thuringiensis Bt407]
gi|228786075|gb|EEM34072.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818940|gb|EEM65002.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 324
Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 19 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 71
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 72 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 122
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 123 ----EPTNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAL 164
Query: 179 ADVYA 183
D
Sbjct: 165 DDCIT 169
>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
Length = 1457
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA---DDYLPDPEAVFIT 61
+V++D ET G + +F V V + + +E E F KP Y+ D +T
Sbjct: 404 YVVFDLETTGLSPKFNELIEFGAV-VWQNGQTLEKHE-FLIKPKEKIPSYISD-----LT 456
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
GIT Q + + E + +I Q F N+ ++ +N RFD
Sbjct: 457 GITNQMIENEAISVEEAAIKIKQIFQ--NSILVAHNA-RFD 494
>gi|160901390|ref|YP_001566972.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
gi|160366974|gb|ABX38587.1| Exonuclease RNase T and DNA polymerase III [Delftia acidovorans
SPH-1]
Length = 212
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 61/190 (32%), Gaps = 26/190 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD---PE-AVFITGIT 64
D ET G DV D+ VR + + + P P +V I +
Sbjct: 38 DCETTGLDVRCDQIISIGAVR------IVGERILSSERLELLVRPSRSVPGDSVRIHRLR 91
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ R +E ++ + S P ++GY + FD + W
Sbjct: 92 ERDLARGLAIEDALAQLLRFIGSRP---LVGY-YLEFDVAMIERVL---------RPWLG 138
Query: 125 GNSRWDLLDVMRAIY-AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD-VY 182
+ ++V Y + W + + L G+ AHDA D V
Sbjct: 139 TGLPNERIEVSALYYDHRFRQLLPW-QQQAPEIDLRFATLMANLGLPQREAHDALNDAVM 197
Query: 183 ATLALVWLIR 192
A LA + L R
Sbjct: 198 AALAFIKLRR 207
>gi|90409038|ref|ZP_01217165.1| ribonuclease T [Psychromonas sp. CNPT3]
gi|90309845|gb|EAS38003.1| ribonuclease T [Psychromonas sp. CNPT3]
Length = 204
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 24/134 (17%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD--YLP------DPEA 57
VI D ET G + D + A + + ++ + P DP+A
Sbjct: 15 VIIDIETSGLNSQTDAILEIAAI-----FPAMDEQGYLYSAQTIHFNVQPFEGANMDPKA 69
Query: 58 VFITGITPQKALRDGVVEAEFSRRI------HQFFSVPNTCIIGYNNIRFDDYYS----- 106
+ TGI P LR + E E I HQ + N I+ +N FD +
Sbjct: 70 LEFTGIDPFNPLRGAIDEKEVLTEIFKLVRKHQKINDCNRSILVAHNAAFDQGFINKASE 129
Query: 107 RNIFYRNFYDSYRW 120
R F R + +
Sbjct: 130 RCNFKRIPFHPFVC 143
>gi|260431958|ref|ZP_05785929.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415786|gb|EEX09045.1| DNA polymerase III, epsilon subunit [Silicibacter lacuscaerulensis
ITI-1157]
Length = 240
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 56/205 (27%), Gaps = 43/205 (20%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D DR + + + W + + E + + EA + GI P
Sbjct: 7 DTETTGFDPESGDRIVEIGAIEL---WNHVATGETYHVYINPERSMPAEAFGVHGIGPDL 63
Query: 68 ALRDGVVEAEFS--------RRIHQFFSVPNTCIIG-----YNNIRFDDYYSRNIFYRNF 114
E +I Q F +G +N FD +
Sbjct: 64 LEPPQKPEPGQITLKDKPVFAQIGQAFRD----FVGDARLVIHNAAFDMKFLNAELGWMG 119
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN- 173
LD + P P+ L L I++ N
Sbjct: 120 LPPIPMEQA--------LDTLAIARKRFPGS---PAS--------LDALCRRFNIDNSNR 160
Query: 174 -AHDAKADVYATLAL-VWLIREKKP 196
H A D + + LI ++P
Sbjct: 161 VLHGALLDSEILAEVYLELIGGRQP 185
>gi|271500216|ref|YP_003333241.1| ribonuclease T [Dickeya dadantii Ech586]
gi|270343771|gb|ACZ76536.1| ribonuclease T [Dickeya dadantii Ech586]
Length = 226
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + + + T F +P + + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAVTLKMDESGWLQP-DDTLHFHIEPFEGAILRPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 82 PSNPLRGAVSEYDALHDIFKAVRKGIKDQNCNRAIIVAHNATFDHSFLMAAAERCGLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|114766856|ref|ZP_01445783.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Pelagibaca bermudensis HTCC2601]
gi|114540977|gb|EAU44036.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Roseovarius sp. HTCC2601]
Length = 401
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITG 62
+ ++D ET G D Q VRV + + + D +P P + +
Sbjct: 276 SYTVFDTETTGLLPHKDEVVQIGAVRV-LNGRIVPGEVMD--QLVDPGIPIPPSSTKVHQ 332
Query: 63 ITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
++ A+ G + AE RR H+F + I+ +N FD + R +RN
Sbjct: 333 VS--DAMVRGQPDIAEAGRRFHRF--AKGSVIVAHNA-PFDMAFLRR--HRNRMGV---E 382
Query: 122 WDNGNSRWDLLDVMRAIYAFS 142
WD+ +LD + S
Sbjct: 383 WDHP-----ILDTVLLSAVLS 398
>gi|34556664|ref|NP_906479.1| DNA polymerase III subunit epsilon [Wolinella succinogenes DSM
1740]
gi|34482378|emb|CAE09379.1| DNA POLYMERASE III EPSILON SUBUNIT DNAQ [Wolinella succinogenes]
Length = 206
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYLPDPEAVFITGI 63
F I D ET G A D+ + + + I+S E FCK +Y+ ITGI
Sbjct: 16 FCIVDVETNGSLPAKDQIIEIGAILYQGG-KIIDSFESYVFCKEVPEYI-----TKITGI 69
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
T ++ L+D E R F + +N + FD + + R+ D
Sbjct: 70 TSEE-LKDAPSMKEVLTRFRLFLGD--AVFVAHNAL-FDYGFLGAMMKRSGMD 118
>gi|88812805|ref|ZP_01128050.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
gi|88789875|gb|EAR20997.1| oligoribonuclease [Nitrococcus mobilis Nb-231]
Length = 185
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 34/199 (17%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVF 59
T + + D E G D D + A D++ + ++ L D
Sbjct: 5 TGNLIWIDLEMTGLDTDRDCIIEIATAVTDKELNILAEGPTVAIHQSETVLAAMDKWNTE 64
Query: 60 ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNF 114
G + ++ + + EA+ +R QF PN + N+I D R +R
Sbjct: 65 QHGSSGLVERVRQSRIDEAQAEQRTLQFLQQWVPPNASPMCGNSICQD----RRFLHRCM 120
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + + D+ + + P+ +Q A
Sbjct: 121 --PKLEQYFHYRN-LDVSTLKELARRWVPEILQ--------------------NFSKRGA 157
Query: 175 HDAKADVYATLALVWLIRE 193
H A DV ++A + R
Sbjct: 158 HLAMDDVRESIAELRYYRR 176
>gi|260549063|ref|ZP_05823284.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
gi|260407791|gb|EEX01263.1| oligoribonuclease Orn [Acinetobacter sp. RUH2624]
Length = 188
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MTNHF----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M++ + D E G D D+ + A + D + V D L
Sbjct: 1 MSSTLNTRLIWIDLEMTGLDTDNDQIIEIATIITDDHLNVLAEGPVLAIHQPDRIL 56
>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
Length = 244
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + + P D DP A+ + G+T +
Sbjct: 7 DTETTGLNPRTGDRLIEIGCVEL-LNRRLTGNNLHIYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVVDQIRDFVKDAELII---HNAPFDLGFLDAEFARLDLPPFT 111
>gi|307324588|ref|ZP_07603795.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
gi|306889832|gb|EFN20811.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
violaceusniger Tu 4113]
Length = 202
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G +A D + A + D + +P + L
Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNIQGEGVDIVVRPPAEAL 52
>gi|257453441|ref|ZP_05618736.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
gi|257449193|gb|EEV24141.1| oligoribonuclease Orn [Enhydrobacter aerosaccus SK60]
Length = 183
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
H + D E G D D + A + D + + VF D +
Sbjct: 6 KHLIWIDLEMTGLDTLSDTIIEIATIVTDSELNILAEGPVF-AIHTPDIV 54
>gi|311741236|ref|ZP_07715060.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
gi|311303406|gb|EFQ79485.1| oligoribonuclease [Corynebacterium pseudogenitalium ATCC 33035]
Length = 215
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D + A V D +
Sbjct: 16 LVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGE 50
>gi|227548676|ref|ZP_03978725.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
gi|227079239|gb|EEI17202.1| oligoribonuclease [Corynebacterium lipophiloflavum DSM 44291]
Length = 211
Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D + A + D +
Sbjct: 9 NDRIVWIDLEMTGLDPDKHVIVEVAALVTDADLNILGD 46
>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 1_1_41FAA]
gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 1_1_41FAA]
Length = 1449
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 37/190 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + ++ + V++ I+ + + + + P + IT
Sbjct: 420 EEFVVFDIETTGLNSHTNKIIEIGAVKIKAG-RIIDR----YSQLINPGISIPYHITEIT 474
Query: 62 GIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
IT Q A + + E I +F ++ +N FD + +
Sbjct: 475 SITNEQVANQPKIDEV-----IGKFVEFIGDAVLVAHNAPFDMGFIKRDIKEYLNIDLEC 529
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDA 177
S ++D ++ PD FK L DL A G+ H A
Sbjct: 530 S---------VIDTLQMARDLFPD-------------FKKYGLGDLNKALGLALEKHHRA 567
Query: 178 KADVYATLAL 187
D AT +
Sbjct: 568 VDDSQATANM 577
>gi|297544667|ref|YP_003676969.1| DNA polymerase III subunit alpha [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 1406
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 30/188 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + F ++D ET G D + V++ + I++ E F P + FI
Sbjct: 389 LDDEFTVFDIETTGLSNINDEIIEIGAVKIKEG-KIIDTFETF---VNPKI---PISSFI 441
Query: 61 TGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T +T +++ E FS N+ ++ +N FD + ++ +
Sbjct: 442 TKLTGIDESMVKDAPSIEEILPKFLEFS-SNSVLVAHNA-NFDVSFIKS----------K 489
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N N +LD + D ++KL LA ++ + H A
Sbjct: 490 AKKFNLNVNNTVLDTLELSRHLYKDL----------KNYKLDTLAEHLQVKLEHHHRAVD 539
Query: 180 DVYATLAL 187
D AT +
Sbjct: 540 DARATAEI 547
>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
Length = 1406
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 30/188 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + F ++D ET G D + V++ + I++ E F P + FI
Sbjct: 389 LDDEFTVFDIETTGLSNINDEIIEIGAVKIKEG-KIIDTFETF---VNPKI---PISSFI 441
Query: 61 TGIT-PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
T +T +++ E FS N+ ++ +N FD + ++ +
Sbjct: 442 TKLTGIDESMVKDAPSIEEILPKFLEFS-SNSVLVAHNA-NFDVSFIKS----------K 489
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
N N +LD + D ++KL LA ++ + H A
Sbjct: 490 AKKFNLNVNNTVLDTLELSRHLYKDL----------KNYKLDTLAEHLQVKLEHHHRAVD 539
Query: 180 DVYATLAL 187
D AT +
Sbjct: 540 DARATAEI 547
>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
Length = 240
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 15/136 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D R + AG+ V+R+ + P D DP+A + GI+
Sbjct: 7 DTETTGLDPQSHRLIEVAGLEMVNRKLT--GRHLHLYIHPQRDI--DPDAQRVHGISLDM 62
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
V +A + I F I +N FD + F R GN
Sbjct: 63 LEGKPVFKA-VAGEIADFLRDAELII---HNAAFDIGFLNAEFARVGLP--ATQKVAGN- 115
Query: 128 RWDLLDVMRAIYAFSP 143
++D + P
Sbjct: 116 ---VIDTLAMAREIFP 128
>gi|21221244|ref|NP_627023.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
gi|289771467|ref|ZP_06530845.1| oligoribonuclease [Streptomyces lividans TK24]
gi|11133768|sp|P57666|ORN_STRCO RecName: Full=Oligoribonuclease
gi|9588056|dbj|BAB03461.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
gi|10303264|emb|CAC10102.1| oligoribonuclease [Streptomyces coelicolor A3(2)]
gi|289701666|gb|EFD69095.1| oligoribonuclease [Streptomyces lividans TK24]
Length = 200
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G ++ D + A + D + + +P + L
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERAL 52
>gi|325288177|ref|YP_004263967.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
gi|324323631|gb|ADY31096.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
Length = 454
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 38/216 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI D ET G + + A R D + ++ + P V +TGI
Sbjct: 2 YVILDIETTGGKFNEEGITEIAIHRFDGH-KVVDKFISL---VNPEKEIQPFVVKLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
K LR E ++RI + ++ +N +FD R F R
Sbjct: 58 -DKMLRTAPKFYEIAKRIVEITED---AVLVAHNAQFDYRILRTEFRRLG---------- 103
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++ S + I P ++ S+ L L + GI + H A D AT
Sbjct: 104 ----YNFERKTLCTVNLSKELI--PDKE----SYSLGKLVRSLGIPVSDRHRANGDALAT 153
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
L L L+ K NK+ ++ +I +M
Sbjct: 154 LQLFKLLLAKD----------SNKSIIKTVIKEGSM 179
>gi|269469132|gb|EEZ80677.1| oligoribonuclease [uncultured SUP05 cluster bacterium]
Length = 180
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + A V D+ +
Sbjct: 5 TNLIWIDLEMTGLIPEKDVIIEIATVVTDKDLNVLAE 41
>gi|262182582|ref|ZP_06042003.1| DNA polymerase III subunit epsilon [Corynebacterium aurimucosum
ATCC 700975]
Length = 223
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET R A VR+D +++ E+ +P+ EA I GIT +
Sbjct: 11 FDLETTSVKPKEARIVTSALVRIDG--REVDKREMLA---DPGVEIPE-EAAKIHGITTE 64
Query: 67 KALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSR 107
KA +G E I+Q + T I+ YN +D R
Sbjct: 65 KARAEGRPHEEVLKETVDSIYQAWDEGLTLIV-YNA-AYDLSVLR 107
>gi|258624141|ref|ZP_05719091.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258583572|gb|EEW08371.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 289
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 49/206 (23%), Positives = 70/206 (33%), Gaps = 28/206 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFITGITPQK 67
D ET G D+ + A D EV C + DP+A+ + GIT +
Sbjct: 110 DTETTGLG-ERDQVIELA--VTDI------RGEVLLCTRLRPTVGIDPQAMGVHGITEAE 160
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + + + + S + I N FD R F D W W N
Sbjct: 161 LSNEPTW-TQVAPALARLLSGRHLVIF---NSSFDSRMLRQT-ASAFGDQLSW-WQEQNC 214
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLA 186
L + A AF + G S L D G+ AH A D AT
Sbjct: 215 ---LCAMKLAADAFGS------TNRHGTIS--LADATCEAGVSWKGRAHSAATDAIATAD 263
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLR 212
LV I + + L L + ++K L
Sbjct: 264 LVTEIAKVQRDLVVQLQELQSKGNLE 289
>gi|302560513|ref|ZP_07312855.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
gi|302478131|gb|EFL41224.1| oligoribonuclease [Streptomyces griseoflavus Tu4000]
Length = 200
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G ++ D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRAL 52
>gi|21673865|ref|NP_661930.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
gi|21647000|gb|AAM72272.1| DNA polymerase III, epsilon subunit [Chlorobium tepidum TLS]
Length = 232
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 28/210 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G D+ DR V + I+ + F + + +AV + GI
Sbjct: 45 FVIFDTETSGFDLVKDRILSIGAV--SMKGSTIDIADSFEVLLRQEAIGGKDAVSVHGIL 102
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
++ L G+ E E R + N I+ ++ FD + + +
Sbjct: 103 -KRDLTQGMEEGEAVCRFLDYLG--NGVIVAHHA-DFDIAMVNRVLSQRYGIKLL----- 153
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N D A +A + + + + ++L +L GI + H + D Y T
Sbjct: 154 -NEALD-----TASFAKRLEKGPYYNLAHKSGEYRLDNLCARYGICLYDRHTSAGDAYLT 207
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKL 214
+LF+ L K + L
Sbjct: 208 -----------AQLFQRLLAVGRKAGIDTL 226
>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
siraeum V10Sc8a]
Length = 1605
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 28/185 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +++D ET G A +R + V++ R E ++ F +P +TG
Sbjct: 589 DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVDRFSTFVNPMMP--IPS-NITELTG 644
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + D E F C +N +FD + R+ R S+
Sbjct: 645 IT-DDMVADAPTEDVAVSDFMAFCGNSPVCA---HNAKFDVSFIRSAAAR-----MEKSF 695
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
DN D L + +A G ++KL +A + + H A AD
Sbjct: 696 DNPV--VDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740
Query: 183 ATLAL 187
+
Sbjct: 741 MLCMI 745
>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
Length = 244
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + + P D DP A+ + G+T +
Sbjct: 7 DTETTGLNPRTGDRLIEIGCVEL-LNRRLTGNNLHIYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVVDQIRDFVKDAELII---HNAPFDLGFLDAEFARLDLPPFT 111
>gi|315650464|ref|ZP_07903534.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Eubacterium saburreum DSM 3986]
gi|315487260|gb|EFU77572.1| 3'-5' exonuclease and CRISPR-associated Cas2 family protein
[Eubacterium saburreum DSM 3986]
Length = 299
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 37/197 (18%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ FVI D ET G D + + ++ V + +S + + +
Sbjct: 127 SKDFVIVDIETDGLDNEKNVIIEVGAIKSVSGVLSEFQSLVNYEGTLPKHIVS------L 180
Query: 61 TGITPQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
TGIT +DG +F + IIGYN I FD + ++ +
Sbjct: 181 TGITTDMLKKDGSDIVVVLKDFVDFLGDL------DIIGYN-IGFDIDFINIALLKSGLE 233
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N R+DL+ ++ F + +KLQ + G+ H
Sbjct: 234 NL------NNKRYDLMRFVKNEKLFLEN-------------YKLQTVIKEYGVGDKVPHR 274
Query: 177 AKADVYATLALVWLIRE 193
A D L + +
Sbjct: 275 ALEDAKMIYKLAMKVNK 291
>gi|284032480|ref|YP_003382411.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
17836]
gi|283811773|gb|ADB33612.1| Exonuclease RNase T and DNA polymerase III [Kribbella flavida DSM
17836]
Length = 415
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 44/206 (21%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPAD---DYLPDPEAVFITGIT 64
D ET G R + A V +D+ E + + D P I GI
Sbjct: 6 DTETTGLLPGHRHRVIEIAVVLLDQH----GRFEHEWVTLLNPQRDLGPQ----HIHGI- 56
Query: 65 PQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD-SYRW 120
D + EF +R + + ++G+N + FD + R F R +
Sbjct: 57 ---LTADVLAAPEFVDVARHLGALLA--GRMVVGHN-VEFDLGFLRAEFARLGHVVPLIT 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ + A Y P + L A GI H A AD
Sbjct: 111 ERS-------MCTMALAGY-LYPGSKRT-----------LGACCAAAGISLQGWHSALAD 151
Query: 181 VYATLAL-VWLIRE-KKPKLFEYLYD 204
AT L +R P +++ Y+
Sbjct: 152 TRATAELFATYLRSFPSPPPWQWAYE 177
>gi|268316801|ref|YP_003290520.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
gi|262334335|gb|ACY48132.1| DNA polymerase III, epsilon subunit [Rhodothermus marinus DSM 4252]
Length = 565
Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 62/192 (32%), Gaps = 29/192 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G A DR + A VRV +E P +TGI
Sbjct: 7 SFVVVDTETTGSGPA-DRIIELAAVRVQGG-RIVERFATL---INPGRSVPPFITRLTGI 61
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T A+ G A+ + F ++ +N+ FD R +W
Sbjct: 62 T--TAMLVGRPSAD--EVLPDFLDFLGDGVLVAHNLAFDRKMLEAELQR-----IGLAW- 111
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
GN L +R P G + L L I N H A D A
Sbjct: 112 PGNP---ALCTLRLARRLLP----------GLPAKGLDGLIRFYQIPVENRHRALGDAEA 158
Query: 184 TLA-LVWLIREK 194
T L+ L+ E
Sbjct: 159 TAHVLLRLLEEA 170
>gi|194910229|ref|XP_001982095.1| GG12405 [Drosophila erecta]
gi|190656733|gb|EDV53965.1| GG12405 [Drosophila erecta]
Length = 184
Score = 41.7 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 15/116 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPDPE 56
V D E G D+ D+ + + + D+ I + + D + E
Sbjct: 11 IVWMDLEMTGLDIEKDKILEVSCIITDKDLNVKSEATCFAINHPQEVYDTMNDWCM---E 67
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNI 109
+ +G+ + V + S + + C +G N++ D + R
Sbjct: 68 QHYKSGL-VDRCKSSDVKPEQASNLVLSYLERNVPKRACPLGGNSVYMDRLFIRKC 122
>gi|311232722|gb|ADP85576.1| Exonuclease RNase T and DNA polymerase III [Desulfovibrio vulgaris
RCH1]
Length = 251
Score = 41.7 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
FV+ D E G D AGV + + +I + F K P+ +A+ +
Sbjct: 45 AATFVVLDLEMTGLVPRRDAIIAVAGVTMRGE--RILAGRCFEAKMRPHLPPEEDAIAVH 102
Query: 62 GITPQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
G+ P + A D E+ + R SVP +G
Sbjct: 103 GLLPDETATHDDPAESLAAFRTFCGDSVPAGWHVG 137
>gi|189346954|ref|YP_001943483.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
gi|189341101|gb|ACD90504.1| DNA polymerase III, epsilon subunit [Chlorobium limicola DSM 245]
Length = 214
Score = 41.7 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 75/224 (33%), Gaps = 45/224 (20%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
+ + V+ D+ET G DR + V V+ E ++ + +
Sbjct: 5 LADSVVVLDFETTGLSPQYGDRAIEIGAVLVEHG-EIVDRFQKL---MNPGFRISSFIEG 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN----NIRFDDYYSRNIFYRNFY 115
TGIT + E + FS I G N N FD + R
Sbjct: 61 YTGITNEMLKGQPCCE-----EVMAEFSG---FIAGRNIVAHNASFDRRFLDFELKRA-- 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI-EHVNA 174
+ ++ L V R IY SP+ +LQ L GI E +
Sbjct: 111 ---KRVYEGACCCS--LLVSRRIYQDSPNH-------------RLQTLVTHAGIPETGSF 152
Query: 175 HDAKADVYAT----LALVWLIREK---KPKLFEYLYDYRNKNQL 211
H A AD T ++++ IR + F+ L D ++L
Sbjct: 153 HRALADAEMTALLWMSMIDRIRRQYGISAITFDQLSDLSKIDKL 196
>gi|329929867|ref|ZP_08283543.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
HGF5]
gi|328935845|gb|EGG32306.1| exonuclease DnaQ family/helicase DinG family [Paenibacillus sp.
HGF5]
Length = 971
Score = 41.7 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 35/184 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFI 60
F + D+ET G + + D Q IE V+ P +
Sbjct: 16 FAVLDFETTG-NQSADEIIQVG-------LAIIEEDRSISRVYGTYVNPGIPIPPFITGL 67
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ +E E + ++G+N + FD + +N R Y +
Sbjct: 68 TGISDSDVADAPSLE-EMMMELVPMLDD--VVLVGHN-VAFDFNFLQNALDRCGYLPF-- 121
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+LD M + I +P S++L ++ G+EH H A +D
Sbjct: 122 -------SGRILDTM---HFLK---ICFP----SLPSYQLGMVSSHFGLEHDRPHQADSD 164
Query: 181 VYAT 184
AT
Sbjct: 165 ALAT 168
>gi|239995207|ref|ZP_04715731.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii ATCC
27126]
Length = 711
Score = 41.7 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 34/193 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+ D ET G + + +R + V++ ++++ + +P +TGI+
Sbjct: 543 YVVVDIETTGGNSSYNRITEIGMVKL-VGGKEVDRFQTLLN--PQRRIPS-NITRLTGIS 598
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR---NFYDSYRWS 121
+ D + AE + + F + + +N + FD + + F R +F +
Sbjct: 599 -DDMVADAPLFAEVAEHVANF--TEDAVFVAHN-VNFDYGFIKQEFARLEQSFRRPKMCT 654
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ G S+ L +L IE H A +D
Sbjct: 655 VREMRRTY-----------------------PGLPSYSLANLTKHFHIEMEQHHRALSDA 691
Query: 182 YATLALVWLIREK 194
A L+ L EK
Sbjct: 692 KAAAELLKLAFEK 704
>gi|171463904|ref|YP_001798017.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193442|gb|ACB44403.1| Exonuclease RNase T and DNA polymerase III [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 198
Score = 41.7 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
H + D E G + +R + A + D I
Sbjct: 19 NEHLIWVDMEMSGLNPETERILEIAIIVTDAHLNTI 54
>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
25563]
gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
25563]
gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
25563]
Length = 1450
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYLPDPEAVF-IT 61
FV+YD ET G + + + V + +E V F + + P+ + +T
Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAV------KIVEKRIVDRFSQLVNPGQSIPQNIVDVT 476
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
IT + +E +F I + ++ +N FD Y + + Y +
Sbjct: 477 NITDSMVQNEPNIEEVLPKFLDFIE------GSILVAHNA-DFDIGYLKQQCKQQGYSDF 529
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S +D ++ P+ F L L G+ N H A
Sbjct: 530 NPS---------FIDTLQMAKDLYPEL----------KQFGLGPLNKKLGLSLENHHRAV 570
Query: 179 ADVYAT 184
D AT
Sbjct: 571 DDCQAT 576
>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
Length = 1450
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 37/186 (19%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYLPDPEAVF-IT 61
FV+YD ET G + + + V + +E V F + + P+ + +T
Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAV------KIVEKRIVDRFSQLVNPGQSIPQNIVDVT 476
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
IT + +E +F I + ++ +N FD Y + + Y +
Sbjct: 477 NITDSMVQNEPNIEEVLPKFLDFIE------GSILVAHNA-DFDIGYLKQQCKQQGYSDF 529
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
S +D ++ P+ F L L G+ N H A
Sbjct: 530 NPS---------FIDTLQMAKDLYPEL----------KQFGLGPLNKKLGLSLENHHRAV 570
Query: 179 ADVYAT 184
D AT
Sbjct: 571 DDCQAT 576
>gi|220934255|ref|YP_002513154.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995565|gb|ACL72167.1| Exonuclease RNase T and DNA polymerase III [Thioalkalivibrio sp.
HL-EbGR7]
Length = 181
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
++ D E G D D + A + D+ + V +D L
Sbjct: 5 PDNLAWIDLEMTGLDTDNDYIIEIATLVTDKDLNILAEGPVIAVHQSDAIL 55
>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
Length = 244
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 56/180 (31%), Gaps = 31/180 (17%)
Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I D ET G + DR + V + + F+ P D DP A+ + G+T
Sbjct: 4 LILDTETTGLNPRGGDRILELGCVEL-VNRRLTGNNLHFYINPERD--SDPGALAVHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ +F+ I QF F II +N FD + F
Sbjct: 61 TEFLSDK----PKFAEIIDQFRDFIQDADLII--HNAPFDIGFLDTEFALLGLPPVST-- 112
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
+++D + P S L L GI H H A D
Sbjct: 113 ----YCGEIIDTLAQAKQMFPG---------KRNS--LDALCDRFGISNAHRTLHGALLD 157
>gi|21929661|gb|AAM81963.1|AF445377_1 DNA polymerase I-like protein B [Trypanosoma brucei]
Length = 1404
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFITG 62
V++D E+ G + A D + A ++ +E S +P P++ I
Sbjct: 763 LVVFDIESTGLNTATDAIIEVAA------FDPVEGTSFSSLVNPQRP--IP-PQSTAIHH 813
Query: 63 IT---PQKALRDGVVEAEFSRRIH----QFFSVPNTCIIGYNNIRFDDYYSRNIF 110
IT Q A R V F+R + Q T +IG+N D+ R F
Sbjct: 814 ITDSMVQGAPRLSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAF 868
>gi|238792291|ref|ZP_04635926.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
gi|238728528|gb|EEQ20047.1| Ribonuclease T [Yersinia intermedia ATCC 29909]
Length = 226
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + W + T F +P + PEA+ GI P
Sbjct: 34 DVETAGFNAQTDALLEIAAVTLQMNKDGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEHDALHAIFKAVRKGLKDQGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACLT-----AGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D T+ L
Sbjct: 192 HSALYD---TMQTAKLF 205
>gi|71755261|ref|XP_828545.1| mitochondrial DNA polymerase I protein B [Trypanosoma brucei
TREU927]
gi|70833931|gb|EAN79433.1| mitochondrial DNA polymerase I protein B, putative [Trypanosoma
brucei]
gi|261334421|emb|CBH17415.1| conserved hypothetical protein, conserved [Trypanosoma brucei
gambiense DAL972]
Length = 1404
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE--STEVFFCKPADDYLPDPEAVFITG 62
V++D E+ G + A D + A ++ +E S +P P++ I
Sbjct: 763 LVVFDIESTGLNTATDAIIEVAA------FDPVEGTSFSSLVNPQRP--IP-PQSTAIHH 813
Query: 63 IT---PQKALRDGVVEAEFSRRIH----QFFSVPNTCIIGYNNIRFDDYYSRNIF 110
IT Q A R V F+R + Q T +IG+N D+ R F
Sbjct: 814 ITDSMVQGAPRLSEVTQAFARYLRLSEGQRDEDEVTILIGHNVFALDEPLLRRAF 868
>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
magna BVS033A4]
gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
magna BVS033A4]
Length = 1421
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 30/181 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
FV++D ET G A ++ + V++ + ++ + + +P PE + +T I
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFN----QLINPEIPIPEKITELTSI 456
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + + +F C + +N FD + + + R
Sbjct: 457 TNEMVKD----MPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRT--- 509
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D + A P + KL L + N H A D A
Sbjct: 510 -------YIDTLAFARALEPHL----------KNHKLDTLTKKYNVNLFNHHRACDDARA 552
Query: 184 T 184
T
Sbjct: 553 T 553
>gi|237718360|ref|ZP_04548841.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
gi|229452293|gb|EEO58084.1| DNA Pol III Epsilon Chain [Bacteroides sp. 2_2_4]
Length = 243
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + + P PEA
Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE--EAKTLRINPEMHI---PEASSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 60 IHGIYDADVV-DCPTFKEVAKNIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----EHV 172
+D+ + + D F K++ L+ A
Sbjct: 114 ------------IDMTKRKFV------------DVQVIFHKMEQRTLSAAYKFYCDKNLE 149
Query: 173 NAHDAKADVYATLALVW 189
+AH A+AD AT ++
Sbjct: 150 DAHTAEADTRATYEVLK 166
>gi|208435412|ref|YP_002267078.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
gi|208433341|gb|ACI28212.1| DNA polymerase III epsilon subunit [Helicobacter pylori G27]
Length = 264
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 50 FSFIDLETTGSCPIKHEILEIGAVQVRGG-EIINRFETLVKVKSVPDYI-----AELTGI 103
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 104 TYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 153
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 154 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 197
Query: 182 YATLAL 187
A+ L
Sbjct: 198 LASYKL 203
>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
Length = 1421
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 60/181 (33%), Gaps = 30/181 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGI 63
FV++D ET G A ++ + V++ + ++ + + +P PE + +T I
Sbjct: 402 FVVFDIETTGLSNATEKITEIGAVKIVDN-KIVDEFN----QLINPEIPIPEKITELTSI 456
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + + + +F C + +N FD + + + R
Sbjct: 457 TNEMVKD----MPKIDAVLPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGINPVRT--- 509
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+D + A P + KL L + N H A D A
Sbjct: 510 -------YIDTLAFARALEPHL----------KNHKLDTLTKKYNVNLFNHHRACDDARA 552
Query: 184 T 184
T
Sbjct: 553 T 553
>gi|331015388|gb|EGH95444.1| hypothetical protein PLA106_05467 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 186
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 23/145 (15%)
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNI 109
P A+ +TG++ K ++G+ AE + + + + +G+N FD +
Sbjct: 53 PAALEVTGLSLDKLRKEGLEPAEAMSQFKAWVESLAGADQSVVFVGFNA-SFDWSFVNYY 111
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F++ Y G + D+ + W S + ++
Sbjct: 112 FHQ-----YLGENPFGIAALDIKSMFFGT-----AQCTW-------KSTRSSEIEKVVSP 154
Query: 170 EHVNAHDAKADVYATLALVWLIREK 194
E HDA D L LIREK
Sbjct: 155 ETSGNHDALDDAVYQAELFNLIREK 179
>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain
[Granulicatella adiacens ATCC 49175]
gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain
[Granulicatella adiacens ATCC 49175]
Length = 1444
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 27/181 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + I+ E F + + +TGI
Sbjct: 426 TYVVFDVETTGLSAIYDSIIELAAVKM-KNGVVIDKFEEF---IDPGHPLSATTIQLTGI 481
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + G E + FS CI+ +N FD + N Y N +
Sbjct: 482 TDD--MVRGSKSVEQVLKEFHEFSK--DCILVAHNASFDMGFL-NTGYENV--GIERTEQ 534
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
++D + P S +L LA + H A D
Sbjct: 535 P------VIDTLELSRMLHPQL----------KSHRLNTLAKRYNVALEQHHRAVYDSET 578
Query: 184 T 184
T
Sbjct: 579 T 579
>gi|308185320|ref|YP_003929453.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
gi|308061240|gb|ADO03136.1| DNA polymerase III subunit epsilon [Helicobacter pylori SJM180]
Length = 287
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 73 FSFVDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 127 TYEDTLNAPSTH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|297559543|ref|YP_003678517.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296843991|gb|ADH66011.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 216
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G D D + A + D + ++ +P L
Sbjct: 1 MNDSLVWIDCEMTGLDFERDALIEVACLITDGELNILDEGVDVVIRPPQAAL 52
>gi|255324289|ref|ZP_05365410.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
gi|255298619|gb|EET77915.1| oligoribonuclease [Corynebacterium tuberculostearicum SK141]
Length = 215
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D + A V D +
Sbjct: 16 LVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGE 50
>gi|160882256|ref|ZP_02063259.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
gi|260173820|ref|ZP_05760232.1| DNA Pol III epsilon chain [Bacteroides sp. D2]
gi|299146573|ref|ZP_07039641.1| exonuclease [Bacteroides sp. 3_1_23]
gi|315922083|ref|ZP_07918323.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156112345|gb|EDO14090.1| hypothetical protein BACOVA_00202 [Bacteroides ovatus ATCC 8483]
gi|298517064|gb|EFI40945.1| exonuclease [Bacteroides sp. 3_1_23]
gi|313695958|gb|EFS32793.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 259
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 43/197 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VF 59
+ N V +D ET G ++ DR + ++V + + P PEA
Sbjct: 5 LKNPIVFFDLETTGTNINTDRIVEICYLKVYPNGNE--EAKTLRINPEMHI---PEASSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I GI + D E ++ I + + G+N+ RFD F R D
Sbjct: 60 IHGIYDADVV-DCPTFKEVAKNIARDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----EHV 172
+D+ + + D F K++ L+ A
Sbjct: 114 ------------IDMTKRKFV------------DVQVIFHKMEQRTLSAAYKFYCDKNLE 149
Query: 173 NAHDAKADVYATLALVW 189
+AH A+AD AT ++
Sbjct: 150 DAHTAEADTRATYEVLK 166
>gi|238787143|ref|ZP_04630943.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
gi|238724931|gb|EEQ16571.1| Ribonuclease T [Yersinia frederiksenii ATCC 33641]
Length = 228
Score = 41.7 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 57/197 (28%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F P + PEA+ GI P
Sbjct: 34 DVETAGFNAQTDALLEIAAVTLQMNKEGWLLPDETLHFHVDPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEYDALHAIFKAVRKGLKDQGCNRAIIVAHNAHFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACLT-----AGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D T+ L
Sbjct: 192 HSALYD---TMQTAKLF 205
>gi|332686699|ref|YP_004456473.1| DNA polymerase III subunit alpha [Melissococcus plutonius ATCC
35311]
gi|332370708|dbj|BAK21664.1| DNA polymerase III alpha subunit [Melissococcus plutonius ATCC
35311]
Length = 1450
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 31/190 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + + V++ + I++ E F + + +TGI
Sbjct: 424 TYVVFDVETTGLSAVYDTIIELSAVKMHKG-NVIDTFEQF---INPGHPLSQTTIHLTGI 479
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + + D E + + F NT ++ +N FD + N YR +
Sbjct: 480 T-NEMVSDAKSE----KVVLNMFKKFSENTILVAHNA-AFDMGFL-NTSYRKYKIP---E 529
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+N ++D + P S +L LA G+ H A D
Sbjct: 530 AENP-----VIDTLELARYLYPTL----------KSHRLNVLAKKFGVGLEQHHRAIYDS 574
Query: 182 YATLALVWLI 191
AT L W+
Sbjct: 575 EATGHLCWIF 584
>gi|320539160|ref|ZP_08038831.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
gi|320030798|gb|EFW12806.1| ribonuclease T (RNase T) [Serratia symbiotica str. Tucson]
Length = 248
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V + ++ + T F +P + PEA+ GI
Sbjct: 55 DVETAGFNAKTDALLEIAAVTLKMDEGGWLQQ-DETLHFHVEPFEGANLQPEALAFNGID 113
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N II +N FD + R RN
Sbjct: 114 PHNPLRGAVSEYDALHAIFKTVRAGIKHRGCNRAIIVAHNANFDHSFLMAAAERASLKRN 173
Query: 114 FYDSYRW 120
+ +
Sbjct: 174 PFHPFAT 180
>gi|46578859|ref|YP_009667.1| exonulcease [Desulfovibrio vulgaris str. Hildenborough]
gi|46448271|gb|AAS94926.1| exonulcease, putative [Desulfovibrio vulgaris str. Hildenborough]
Length = 244
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
FV+ D E G D AGV + + +I + F K P+ +A+ +
Sbjct: 38 AATFVVLDLEMTGLVPRRDAIIAVAGVTMRGE--RILAGRCFEAKMRPHLPPEEDAIAVH 95
Query: 62 GITPQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
G+ P + A D E+ + R SVP +G
Sbjct: 96 GLLPDETATHDDPAESLAAFRTFCGDSVPAGWHVG 130
>gi|288800983|ref|ZP_06406439.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
gi|288331917|gb|EFC70399.1| exonuclease [Prevotella sp. oral taxon 299 str. F0039]
Length = 208
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 26/193 (13%)
Query: 5 FVIYDYETFGR-----DVALD-----RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
++ +D ET G + D R Q A + + + + P +P
Sbjct: 16 YLFFDTETTGIPNDYNAPSEDTNNWPRLVQIAWLITRENGDIYKELQSRIISPEGFRIPQ 75
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN- 113
++ I GIT +KA+ DG + + ++G+N I FD + RN
Sbjct: 76 -SSINIHGITQEKAVEDGEDLCDVLNDFVNDVDYNDVILVGHN-IYFDIHVVTAELIRND 133
Query: 114 FYDSYRW-SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-ALANGIEH 171
D N I G ++P KLQ L G
Sbjct: 134 MIDEKETLEKINKICTMKKSTDFCKISGLY--GYKYP---------KLQQLYYKLFGENF 182
Query: 172 VNAHDAKADVYAT 184
NAHDA +D+ AT
Sbjct: 183 DNAHDAGSDIEAT 195
>gi|297160318|gb|ADI10030.1| oligoribonuclease [Streptomyces bingchenggensis BCW-1]
Length = 202
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
M + V D E G ++ D + A + D + + +P
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVVRPP 48
>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Exiguobacterium sp. AT1b]
gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
AT1b]
Length = 936
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 32/188 (17%)
Query: 3 NHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAVF 59
+ +VI D ET G V D +FA V V E IE +P P
Sbjct: 2 DTYVIVDLETTGHSVKSGDELIEFAAVVVQEG-EVIERYSTLIRPSRPIP-----PFITQ 55
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T I+ + E + I + + +N + FD + + Y ++
Sbjct: 56 LTTISDEDVSDAPTFE-DVIPDIWKMLD--GRVFVAHN-VAFDLTFLNESLEQAGYLAF- 110
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
G +D + P S L+ L+ + H +AH A +
Sbjct: 111 ----QGR----AIDTVELARILYPTL----------ESHALEALSDTFDLVHTDAHRALS 152
Query: 180 DVYATLAL 187
D AT L
Sbjct: 153 DAEATAEL 160
>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
Length = 1605
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 28/185 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +++D ET G A +R + V++ R E +E F +P +TG
Sbjct: 589 DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVERFSTFVNPMMP--IPS-NITELTG 644
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + D E F C +N +FD + R+ R S+
Sbjct: 645 IT-DDMVADAPTEDVAVSDFMAFCGNSPVCA---HNAKFDVSFIRSAAAR-----MEKSF 695
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
DN D L + +A G ++KL +A + + H A AD
Sbjct: 696 DNPV--VDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740
Query: 183 ATLAL 187
+
Sbjct: 741 MLCMI 745
>gi|89098849|ref|ZP_01171730.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
gi|89086525|gb|EAR65645.1| hypothetical protein B14911_05299 [Bacillus sp. NRRL B-14911]
Length = 243
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 32/183 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT-PQ 66
D ET G D V+++ I + F+ + P+ +TG+ Q
Sbjct: 63 DIETTGFFPDQGDEIISIGAVKIENG--TINEDKKFYSLIRYEKTLSPQIEQLTGLRGSQ 120
Query: 67 KALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ E EF + F T I ++ R + + +N +++F +
Sbjct: 121 LKEAPPLPEVLIEFFK-----FCEARTIIA--HHARHEKSFLQNASWKHFKAPLKHR--- 170
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
++D P+ +L+DL NGI + H A D
Sbjct: 171 ------IIDTSFLYRIAEPE-----LNLQ-----RLEDLCSHNGIPVMERHHALEDARLA 214
Query: 185 LAL 187
L
Sbjct: 215 AEL 217
>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
Length = 1446
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
FV++D ET G D +F GV++ + E++ ++F
Sbjct: 396 TFVVFDLETTGLSNTRDEIIEFGGVKI-KNREEVGRLQMF 434
>gi|29833361|ref|NP_827995.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
MA-4680]
gi|29610484|dbj|BAC74530.1| putative DNA polymerase III epsilon subunit [Streptomyces
avermitilis MA-4680]
Length = 241
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G DV DR A V D V +P P A + G+T +
Sbjct: 12 FDTETTGVDVETDRIVSAAVVVQDA---PGARPRVSRWLVNPG-VPVPAGATAVHGLTDE 67
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCI 93
R+G + I + T
Sbjct: 68 HLQRNGRWPSPVMDEIARELGEQATAG 94
>gi|188991408|ref|YP_001903418.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
B100]
gi|126030541|pdb|2GBZ|A Chain A, The Crystal Structure Of Xc847 From Xanthomonas
Campestris: A 3-5 Oligoribonuclease Of Dnaq Fold Family
With A Novel Opposingly-Shifted Helix
gi|167733168|emb|CAP51366.1| Oligoribonuclease [Xanthomonas campestris pv. campestris]
Length = 194
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D D + A + D Q +
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAE 45
>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
Length = 244
Score = 41.7 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + + P D DP A+ + G+T +
Sbjct: 7 DTETTGLNPRTGDRLIEIGCVEL-LNRRLTGNNLHIYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVVDQIRDFVKGAELII---HNAPFDLGFLDAEFARLDLPPFT 111
>gi|302550499|ref|ZP_07302841.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
gi|302468117|gb|EFL31210.1| DNA polymerase III subunit epsilon [Streptomyces viridochromogenes
DSM 40736]
Length = 330
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 41/193 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T +
Sbjct: 27 DVETTGL-ARDDRIISAAVYRLDAR-GEVEDHWYTMVNPERD----PGPVWIHGLTSEAL 80
Query: 69 LRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+G + I + F+ ++ +N + FD +
Sbjct: 81 --EGAP---LFQDIAEEFTTRLEGRVLVAHNAV-FDWQM------------IAREYARAQ 122
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
+ + I G+ P+ KL+ LA G+ AH A D
Sbjct: 123 REVPVRQRLCTIALSKELGLPLPNH-------KLESLAAHYGVVQRRAHHALDD------ 169
Query: 187 LVWLIREK-KPKL 198
++ E +P L
Sbjct: 170 -ARVLAEAFQPSL 181
>gi|333030104|ref|ZP_08458165.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
DSM 18011]
gi|332740701|gb|EGJ71183.1| Exonuclease RNase T and DNA polymerase III [Bacteroides coprosuis
DSM 18011]
Length = 256
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ N V +D ET G ++ DR + ++V + T + + +P P E+
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVHPNGNEESKTL----RINPE-MPIPAESSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I GI + + D E ++ I + + + G+N+ RFD F R D
Sbjct: 60 IHGIF-DEDIADCPTFKEVAKNIAKDI--EGSDLAGFNSNRFDIPLLAEEFLRAGVD 113
>gi|240273598|gb|EER37118.1| oligoribonuclease [Ajellomyces capsulatus H143]
Length = 189
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
T V D E G + D+ Q D + F + PE+V
Sbjct: 7 TAPLVWIDCEMTGLNHRTDKILQICCFITDADLNLL-EPTGFEA-----VIHHPESVL 58
>gi|121582521|ref|YP_974053.1| exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
gi|120608579|gb|ABM44318.1| Exonuclease, RNase T and DNA polymerase III [Acidovorax sp. JS42]
Length = 302
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 33/181 (18%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D + A VD + + V + + PEA I GITP
Sbjct: 136 DTETTGLYGGCGDELLELA--LVDDAGNVLLDSLVKPDRHTEW----PEAQAIHGITPAD 189
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ +E+ R+ T +I N FD F + +
Sbjct: 190 VMNAPSLES-LLPRLLAVIEDAGTLVI--YNAGFD-----LAFLPDAVRPVASN------ 235
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL----ALANGIEHVNAHDAKADVYA 183
+ A++AF + D+ S++ L A +AH A+AD A
Sbjct: 236 -----KALCAMHAF---SLHAGEWDERRQSYRWHKLGVAACAAGHRWEGSAHRARADALA 287
Query: 184 T 184
T
Sbjct: 288 T 288
>gi|326941329|gb|AEA17225.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 315
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPTNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAL 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|283458223|ref|YP_003362841.1| oligoribonuclease [Rothia mucilaginosa DY-18]
gi|283134256|dbj|BAI65021.1| oligoribonuclease [Rothia mucilaginosa DY-18]
Length = 228
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ V D E G DV D + + D + S F KP D+
Sbjct: 5 SERIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDE----------- 53
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+P AL +F R +H+ + G + + R I + + +
Sbjct: 54 --SPAGALE---NMNDFVRSMHEASGLLPDIEHGVSMDYAQEQVLRYI--KKYVPVAGKA 106
Query: 122 WDNGNS 127
GNS
Sbjct: 107 QLGGNS 112
>gi|255326016|ref|ZP_05367104.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
gi|255296907|gb|EET76236.1| oligoribonuclease [Rothia mucilaginosa ATCC 25296]
Length = 228
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 18/126 (14%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ V D E G DV D + + D + S F KP D+
Sbjct: 5 SERIVWIDCEMTGLDVENDALVEVGVLVTDADLNILGSGVEFVIKPGDE----------- 53
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+P AL +F R +H+ + G + + R I + + +
Sbjct: 54 --SPAGALE---NMNDFVRSMHEASGLLPDIEHGVSMDYAQEQVLRYI--KKYVPVAGKA 106
Query: 122 WDNGNS 127
GNS
Sbjct: 107 QLGGNS 112
>gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523]
Length = 230
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 60/189 (31%), Gaps = 30/189 (15%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V +T F+C P + + A+ I G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRVTGNTLHFYCNPNYEV--EAGALAIHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ + E + I F II +N FD + + Y N
Sbjct: 62 NEFLADKPLFEDKVDEMI--DFLKGAEVII--HNAAFDVPFINWELSLLKNNKYGTLEQN 117
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA----- 177
D L++ R + + L L I H H A
Sbjct: 118 VAKIVDSLELARKKHPLQKNN--------------LDALCKRYQIRNDHRTFHGALLDSE 163
Query: 178 -KADVYATL 185
ADVY +
Sbjct: 164 LLADVYLAM 172
>gi|88704503|ref|ZP_01102217.1| oligoribonuclease [Congregibacter litoralis KT71]
gi|88701554|gb|EAQ98659.1| oligoribonuclease [Congregibacter litoralis KT71]
Length = 188
Score = 41.7 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D DR + A + D +
Sbjct: 10 NLIWVDMEMTGLDPDGDRVIEIATIVTDSDLHPLAE 45
>gi|163754237|ref|ZP_02161360.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
gi|161326451|gb|EDP97777.1| DNA polymerase III, epsilon subunit [Kordia algicida OT-1]
Length = 457
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 62/386 (16%), Positives = 118/386 (30%), Gaps = 93/386 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
+ I D ET GR + + F + D + ++ L +P + T
Sbjct: 4 NPTYTIIDVETTGRSNKITEISIF---KFDGET-IVDEFTS---------LVNPNVLIPT 50
Query: 62 GIT----PQKAL-RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT A+ D AE ++ + ++ + +N + FD RN F
Sbjct: 51 HITALTGIDNAMVADAPTFAEIAKEVLSI--TKDSIFVAHN-VNFDYNVIRNEF------ 101
Query: 117 SYRWSWDNGNSRWDL------LDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
DL L +R A P G S+ L L + I
Sbjct: 102 ----------KAIDLDFRRKKLCTVRLSRALIP----------GFKSYSLGKLCKSLNIH 141
Query: 171 HVNAHDAKADVYATLALVWLI--REKKPKLFEYLYDYRNKNQL------RKLIDIQNMTP 222
+ H A+ D AT+ L L+ ++ + F+ +K K+ D P
Sbjct: 142 ISDRHRARGDAAATVILFQLLLTKDAAAETFQKFLKRESKEATLPPHLPSKIFDDLPAKP 201
Query: 223 LVHVS----GMF---GASRSNTALIAPVAWHPRYK-------DSVIGCNLSGDMRVFQDL 268
++ G G +++ + ++ K + I LSG + +
Sbjct: 202 GIYYFKDKKGKIIYVGKAKNIQKRVLGHFYNKSKKELDLCRETADIDYELSGSELIALLM 261
Query: 269 DSVQLA----------KRLFTSHDELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWG 318
+ + KR + ++ + +N + +
Sbjct: 262 EDAAIKHHYPRYNVASKRTPKRFAIFEYADRRGVRHLAIN------DAKIIQDPLIVFYN 315
Query: 319 IDHKRCLENLTLLRQQTNLRDRFKAI 344
I + C L L Q +L ++ +
Sbjct: 316 I--RDCRTYLERLCMQFDLCPKYCHL 339
>gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N]
gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N]
Length = 243
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I+D ET G D A R + V + + D DPEA+ + G+T
Sbjct: 4 IIFDTETTGLDPAQGHRIVEIGCVEL-VNRMVTGRNLHLY--LNPDRDSDPEALAVHGLT 60
Query: 65 PQKALRD 71
Sbjct: 61 TAFLSDK 67
>gi|47567894|ref|ZP_00238601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
gi|47555372|gb|EAL13716.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
cereus G9241]
Length = 303
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFI 60
++V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +
Sbjct: 12 NYVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----L 64
Query: 61 TGITPQKALRDGVVE 75
TGIT + +E
Sbjct: 65 TGITNYRVSDAPTIE 79
>gi|317014965|gb|ADU82401.1| DNA polymerase III subunit epsilon [Helicobacter pylori
Gambia94/24]
Length = 287
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQVRGG-EIINRFETLVKVKSVPDYI-----AELTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 127 TYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|21231607|ref|NP_637524.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66768271|ref|YP_243033.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
8004]
gi|23821916|sp|Q8P8S1|ORN_XANCP RecName: Full=Oligoribonuclease
gi|81305754|sp|Q4UVB0|ORN_XANC8 RecName: Full=Oligoribonuclease
gi|21113297|gb|AAM41448.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573603|gb|AAY49013.1| oligoribonuclease [Xanthomonas campestris pv. campestris str.
8004]
Length = 194
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D D + A + D Q +
Sbjct: 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAE 45
>gi|303271977|ref|XP_003055350.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
gi|226463324|gb|EEH60602.1| DNA helicase/exonuclease [Micromonas pusilla CCMP1545]
Length = 1468
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 30/188 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPEAVFITGIT 64
+++D ET G DR + A P YL + +TGIT
Sbjct: 308 IVFDLETTGLAKLKDRIIEIAAY----DLNDKTHAPMSTLVNPGRTYL-TGQITRLTGIT 362
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
GV + + + F + I+ +N R D F + YD
Sbjct: 363 NAMVSNPGVPSFVRAAELLEEFVDEARRRGGGASVILAAHNARQFD----AGFLKAEYDR 418
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL---ANGIEHVNA 174
+ + + W +D + P + + S K++ LA ++ A
Sbjct: 419 IQREFPDD---WRFVDTLPIARKLVP-------KTEVFGSHKMEALATRYDVKPVDGETA 468
Query: 175 HDAKADVY 182
H A AD
Sbjct: 469 HRAGADAR 476
>gi|167648966|ref|YP_001686629.1| DNA polymerase III subunit epsilon [Caulobacter sp. K31]
gi|167351396|gb|ABZ74131.1| DNA polymerase III, epsilon subunit [Caulobacter sp. K31]
Length = 238
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D DR + + V + + +C P D +P EA + G++ +
Sbjct: 8 DTETTGFDPKTGDRLVEIGCIEV-VDFMPTGRSFHEYCDPLRD-MPA-EAQKVHGLSIEF 64
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
G + F + I +N FD + +
Sbjct: 65 LT--GKPKFHEIADAFLEFVGDSPVIA--HNAAFDRSFVNFELEKCNRGPLP 112
>gi|226360543|ref|YP_002778321.1| oligoribonuclease [Rhodococcus opacus B4]
gi|226239028|dbj|BAH49376.1| oligoribonuclease [Rhodococcus opacus B4]
Length = 199
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---PDPEA 57
M + V D E G + D+ + A + D + + DD L PD
Sbjct: 1 MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60
Query: 58 VFI--TGITPQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFD 102
+G+T + + V AE ++ I + V T + N+I D
Sbjct: 61 KMHENSGLT-DEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATD 110
>gi|238486688|ref|XP_002374582.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
gi|317144078|ref|XP_003189562.1| RNA exonuclease Rex2 [Aspergillus oryzae RIB40]
gi|220699461|gb|EED55800.1| RNA exonuclease Rex2, putative [Aspergillus flavus NRRL3357]
Length = 191
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 21/117 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE----STEVFFCKPADDYLPD------ 54
V D E G D D+ Q D + ++ T + K D +
Sbjct: 10 LVWIDCEMTGLDSEKDQIIQVCCFVTDANLQLLDPHGFETVIHASKTTMDNMSQWCIDTH 69
Query: 55 -----PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
AV + +TP+ A +E I ++ P T ++ N++ D +
Sbjct: 70 GRTGLTAAVLASTVTPESAA------SELLAYIQRYVPQPRTALLAGNSVHADKAFL 120
>gi|33593655|ref|NP_881299.1| oligoribonuclease [Bordetella pertussis Tohama I]
gi|33596303|ref|NP_883946.1| oligoribonuclease [Bordetella parapertussis 12822]
gi|33602411|ref|NP_889971.1| oligoribonuclease [Bordetella bronchiseptica RB50]
gi|41017436|sp|Q7VVH7|ORN_BORPE RecName: Full=Oligoribonuclease
gi|41017438|sp|Q7W9T4|ORN_BORPA RecName: Full=Oligoribonuclease
gi|41017439|sp|Q7WGX3|ORN_BORBR RecName: Full=Oligoribonuclease
gi|33563728|emb|CAE42963.1| oligoribonuclease [Bordetella pertussis Tohama I]
gi|33566072|emb|CAE36971.1| oligoribonuclease [Bordetella parapertussis]
gi|33576850|emb|CAE33930.1| oligoribonuclease [Bordetella bronchiseptica RB50]
gi|332383059|gb|AEE67906.1| oligoribonuclease [Bordetella pertussis CS]
Length = 181
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 54/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N V D E G D +R + A V + + V + P+++
Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVL-------VVHQPDSLLDAM 58
Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYY 105
G + +K + EA+ + + +F + C N I D
Sbjct: 59 DNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPLCG---NTISQD--- 112
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
F + + + N D+ + ++P +
Sbjct: 113 --RRFMYAYMPNLERFFHYRN--LDVSTLKELARRWAPAVYK------------------ 150
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIRE 193
G + + H+A AD+Y ++ + RE
Sbjct: 151 --GFDKKSRHEALADIYESIDELKYYRE 176
>gi|172057786|ref|YP_001814246.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Exiguobacterium sibiricum 255-15]
gi|171990307|gb|ACB61229.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium
sibiricum 255-15]
Length = 937
Score = 41.3 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 61/188 (32%), Gaps = 30/188 (15%)
Query: 1 MTNHFVIYDYETFGRD-VALDRPAQFA-GVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M FV+ D ET G + D + V D Q I F +P +P P
Sbjct: 1 MEKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDGQ---ITERLSAFVRPQK-PIP-PFIS 55
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGIT + + A + R+ Q + +N ++FD + Y Y
Sbjct: 56 QLTGIT-DEDVAQAESFATIAPRVLQLLD--GGVFVAHN-VQFDLTFLNEALEEEGYLPY 111
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
++D + P S L L A + H AH A
Sbjct: 112 ---------TGPVIDTVELARILLPTA----------ESHSLSHLTEALQLTHHEAHRAG 152
Query: 179 ADVYATLA 186
+D AT
Sbjct: 153 SDAEATAE 160
>gi|330444995|ref|ZP_08308649.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493113|dbj|GAA03146.1| oligoribonuclease monomer [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 181
Score = 41.3 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + + A + D Q +
Sbjct: 6 KNLIWIDLEMTGLDPETHKIIEIATIVTDPQLNILAE 42
>gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
Length = 1433
Score = 41.3 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 65/205 (31%), Gaps = 52/205 (25%)
Query: 5 FVIYDYETFGRDVALDRPA----------QFA-------GVRVDRQWEKIESTEVFFCKP 47
++IYD ET G + P Q A G +D Q I E F
Sbjct: 2 YLIYDTETTGLPKNYNAPLSDADNWPRCVQIAWQLHGANGELLDAQ-NHIIKPEGFD--- 57
Query: 48 ADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD----- 102
+P A + GI+ ++A ++G E + ++G+N I FD
Sbjct: 58 ----IPY-NAEKVHGISTERAQKEGKPLIEVLEAFKTILEKTD-VVVGHN-ISFDISIMG 110
Query: 103 DYYSRNIFYRNFYD--SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL 160
R + + G I +WP+ L
Sbjct: 111 AEMLRKELSETVLTEKPIIDTKEAGTD-------FCKIPGGRGGKYKWPT---------L 154
Query: 161 QDLALAN-GIEHVNAHDAKADVYAT 184
+L G + +AHDA DV AT
Sbjct: 155 TELHKKLFGQDFADAHDAAYDVDAT 179
>gi|217980141|ref|YP_002364191.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
gi|217508312|gb|ACK55097.1| Exonuclease RNase T and DNA polymerase III [Thauera sp. MZ1T]
Length = 201
Score = 41.3 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 66/189 (34%), Gaps = 22/189 (11%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +I D ET G + A + D + T V P EAV I GI
Sbjct: 21 NALILDTETTGLG-DDAEVVEIAVI--DCAGNVLLDTLVRPSGPVP-----AEAVAIHGI 72
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T L D +E IH F V ++ Y + FD R +
Sbjct: 73 T-DAMLADAPTWSE----IHDRFCCLVEGRQVVIY-SREFDARLISQTARRYGLPAP--- 123
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVNAHDAKAD 180
+ D + A++A++ +W + G + KL A G+ NAH A D
Sbjct: 124 -KGFDQVLDDDRIHCAMHAYAAFRGEWSE-EKGRYRWQKLSAAAEQQGVTVGNAHRALGD 181
Query: 181 VYATLALVW 189
TL ++
Sbjct: 182 CVMTLGIIR 190
>gi|111018425|ref|YP_701397.1| oligoribonuclease [Rhodococcus jostii RHA1]
gi|123340872|sp|Q0SGU7|ORN_RHOSR RecName: Full=Oligoribonuclease
gi|110817955|gb|ABG93239.1| oligoribonuclease [Rhodococcus jostii RHA1]
Length = 199
Score = 41.3 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL---PDPEA 57
M + V D E G + D+ + A + D + + DD L PD
Sbjct: 1 MQDKLVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVT 60
Query: 58 VFI--TGITPQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFD 102
+G+T + + V AE ++ I + V T + N+I D
Sbjct: 61 KMHENSGLT-DEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATD 110
>gi|41057226|ref|NP_958252.1| hypothetical protein VWBp10 [Streptomyces phage VWB]
gi|39656049|gb|AAR29700.1| hypothetical protein [Streptomyces phage VWB]
Length = 263
Score = 41.3 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 14/111 (12%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G DV DR A + D E +P+ A + GIT +
Sbjct: 10 FDLETTGVDVEQDRIVTAAAI--DLG---AEKPLTLEWLADPGIEIPE-GATAVHGITTE 63
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIG----YNNIRFDDYYSRNIF 110
A G + ++ + + ++G Y+ D R
Sbjct: 64 HAREHGERAHDVVDQVAETLALRVRDGVPVVGHNVPYDLTLLDRECRRYEL 114
>gi|294811599|ref|ZP_06770242.1| Putative DNA polymerase III epsilon subunit [Streptomyces
clavuligerus ATCC 27064]
gi|294324198|gb|EFG05841.1| Putative DNA polymerase III epsilon subunit [Streptomyces
clavuligerus ATCC 27064]
Length = 287
Score = 41.3 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A V D + P A + G+T
Sbjct: 58 FDTETTGVDVENDRIVAAAVVVQDMAG---GRPRITRWLINPGIPVPPGATEVHGLTDDH 114
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIG----YNNIRFDDYYSRNIFYRNFYDSYRW 120
R+G A + + + C G N FD R+
Sbjct: 115 VQRNGRWPAPVLEEVAKTVA--GHCAAGRPLVVMNAPFDLTILDRELRRHRATPLSR 169
>gi|222823839|ref|YP_002575413.1| exonuclease [Campylobacter lari RM2100]
gi|222539061|gb|ACM64162.1| conserved hypothetical protein, putative exonuclease [Campylobacter
lari RM2100]
Length = 459
Score = 41.3 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 67/202 (33%), Gaps = 48/202 (23%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF----FCKP---ADDYLPDPEAVFIT 61
D ET G D Q I+ T + KP + EA I
Sbjct: 155 DTETTGLREWEDEILQ---------LSIIDETGYLIFDKYFKPKYKSTWI----EAQKIH 201
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GI P ++ + ++ + F+ + IIGYN + FD + + + +F
Sbjct: 202 GIKPAFVQNKASID-NYKIQLEKIFNDAD-VIIGYN-LDFDLKFIKRVI--DFEKPMF-- 254
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA----------NGIEH 171
D++ + + Y + D S+K L A N +
Sbjct: 255 ------CIDVMKLFTSYYHEESSILP---NVDCGYSYK--KLTFAAWHFKNPNALNPLNF 303
Query: 172 VNAHDAKADVYATLALVWLIRE 193
AH A D ATL ++ + +
Sbjct: 304 HGAHGALEDARATLYVLTKLEQ 325
>gi|242309952|ref|ZP_04809107.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
98-5489]
gi|239523249|gb|EEQ63115.1| DNA polymerase III subunit epsilon [Helicobacter pullorum MIT
98-5489]
Length = 247
Score = 41.3 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 35/188 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I D ET G + L +P + + + E FC+ +Y+ IT IT
Sbjct: 71 FCIVDIETNGHNPFLHQPIEIGAILYQNGMVQKEFQSFVFCEEIPEYI-----TKITNIT 125
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + ++ + F + C+ +N+ FD + N + +
Sbjct: 126 TEMLRNAPPIH-----QVLESFRIFLGDCVFVAHNVGFDYGFLSNSLHHYGFG------- 173
Query: 124 NGNSRWDLLDVMRAIYAFSPDG--IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
Y ++P I+ + A + L+ L I H H A D
Sbjct: 174 ---------------YLYNPSLCTIKLAQKTFQAPRYSLEFLNGFLNINHSPLHRALEDA 218
Query: 182 YATLALVW 189
L +
Sbjct: 219 KVALEVFK 226
>gi|117928856|ref|YP_873407.1| oligoribonuclease [Acidothermus cellulolyticus 11B]
gi|117649319|gb|ABK53421.1| Exonuclease, RNase T and DNA polymerase III [Acidothermus
cellulolyticus 11B]
Length = 269
Score = 41.3 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
MT+ V D E G D+ D + A + D + I KP D+ L
Sbjct: 1 MTDALVWIDCEMTGLDLRSDALIEVAMLITDAELNVISDGIDVVIKPPDEAL 52
>gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
ATCC 23330]
Length = 252
Score = 41.3 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 27/142 (19%)
Query: 9 DYETFGRDVAL----DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLPDPEAV 58
D ET G + + DR +FAG+ + P D +P+A+
Sbjct: 12 DTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLH-------LYIHPQRDI--NPDAI 62
Query: 59 FITGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GIT +K + AE +++I F I +N +FD + F R
Sbjct: 63 AVHGITLEKLESENAPVFAEVAQQIFDFIKGAELII---HNAKFDVGFLDAEFARVGLPK 119
Query: 118 YRWSWDNGNSRWDLLDVMRAIY 139
+ + D L++ R Y
Sbjct: 120 VKTI----CTVVDTLEMARDRY 137
>gi|298737180|ref|YP_003729710.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
gi|298356374|emb|CBI67246.1| DNA polymerase III subunit epsilon [Helicobacter pylori B8]
Length = 323
Score = 41.3 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 57/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 162
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L V E + + F N+ + +N FD + F +
Sbjct: 163 TYEDTLNAPSVH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 212
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 213 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 256
Query: 182 YATLAL 187
A+ L
Sbjct: 257 LASYKL 262
>gi|54026013|ref|YP_120255.1| DNA polymerase III subunit epsilon [Nocardia farcinica IFM 10152]
gi|54017521|dbj|BAD58891.1| putative DNA polymerase [Nocardia farcinica IFM 10152]
Length = 229
Score = 41.3 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET D R + +RVD +P P EA I G T +
Sbjct: 11 FDLETTSADPHSARVVTASIIRVDG-----GDVRARNWIANPH-IPIPAEATEIHGYTDE 64
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFD 102
+ G A+ + C+ YN FD
Sbjct: 65 YVQKHGRPHADVIAEVTAELHACWAEGRCVAVYNG-SFD 102
>gi|30248167|ref|NP_840237.1| DNA polymerase III (epsilon chain) protein [Nitrosomonas europaea
ATCC 19718]
gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
europaea ATCC 19718]
Length = 232
Score = 41.3 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 37/186 (19%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V D ET G D AL R + A V V + + D A+ + G+
Sbjct: 3 YVFLDTETTGLDPALGHRIVEIAAVEV-CNRRLTDRHFHRY--LNPGRESDEGALRVHGL 59
Query: 64 TPQKALRDGVVE---AEFSRRI--HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
T + V + +EF I + F +G+ N D R +N
Sbjct: 60 TREFLRDKPVFQDVCSEFLEFIADAEIFIHNAPFDVGFINRELD--LIRFESMQNH---- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHD 176
++D + P G + L L I H H
Sbjct: 114 ---------CLQIIDTLVLAKELHP----------GKRN-NLDALCERYQIDNSHRTLHG 153
Query: 177 AKADVY 182
A D
Sbjct: 154 ALLDAE 159
>gi|15645997|ref|NP_208178.1| DNA polymerase III subunit epsilon [Helicobacter pylori 26695]
gi|2314554|gb|AAD08426.1| DNA polymerase III epsilon subunit (dnaQ) [Helicobacter pylori
26695]
Length = 350
Score = 41.3 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 109 FSFIDLETTGSCPIKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 162
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 163 TYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 212
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 213 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 256
Query: 182 YATLAL 187
A+ L
Sbjct: 257 LASYKL 262
>gi|16763100|ref|NP_458717.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
CT18]
gi|29144582|ref|NP_807924.1| exonuclease [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|56414696|ref|YP_151771.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|197363623|ref|YP_002143260.1| exonuclease [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
gi|213051586|ref|ZP_03344464.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213427175|ref|ZP_03359925.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213855476|ref|ZP_03383716.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
gi|25513436|pir||AI1038 probable exonuclease STY4637 [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16505408|emb|CAD06758.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29140220|gb|AAO71784.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56128953|gb|AAV78459.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197095100|emb|CAR60646.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 194
Score = 41.3 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 63/198 (31%), Gaps = 28/198 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPE 56
+ N ++ D ET G + + D + KP D E
Sbjct: 16 LDNDYLFIDTETTGLG-DDAEIVEICII--DSHGFIMLNTLIKPT----KPIPD-----E 63
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
A+ I GIT + + + + + F I N FD R + N
Sbjct: 64 AIAIHGIT-NEMVAFAPAWTDICGAVEELFRRFGFVIY---NADFDLRLIRQTYALNERP 119
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175
S W + M+ + + P R +G KL D A G+ AH
Sbjct: 120 SEGAPWMLAAHS---VCAMKLYAEYRGE----PGRFNGYKWHKLVDAAAHEGVVVEGKAH 172
Query: 176 DAKADVYATLALVWLIRE 193
A AD TL LV + +
Sbjct: 173 RALADCKMTLGLVRALAK 190
>gi|326803355|ref|YP_004321173.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650663|gb|AEA00846.1| putative DNA polymerase III, epsilon subunit [Aerococcus urinae
ACS-120-V-Col10a]
Length = 173
Score = 41.3 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 35/197 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-F 59
+ + +V +D ET G + + Q + V R ++I + + D P P +
Sbjct: 9 VPSEYVAFDLETTGLGFS-SKIIQISAVHF-RDGKEIGAFDQL---VNPDR-PIPAKITQ 62
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+TGI+ D + + IH F + + + + GYN+ +FD R D
Sbjct: 63 LTGIS----DADVYLSPTIDQVIHDFMAFIKDLPLAGYNSKKFDIPMLRA---NTGID-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+G D+L++ R +P+ +KL + GI++ AHD+
Sbjct: 114 ----LSGLPHMDVLEMARLSPIRTPN-------------YKLTTVKAHYGIQN-RAHDSL 155
Query: 179 ADVYATLALVWLIREKK 195
D AT ++ R+
Sbjct: 156 NDSRATALILEEFRKGN 172
>gi|53714270|ref|YP_100262.1| DNA polymerase III subunit epsilon [Bacteroides fragilis YCH46]
gi|60682326|ref|YP_212470.1| putative DNA polymerase III subunit epsilon [Bacteroides fragilis
NCTC 9343]
gi|253564786|ref|ZP_04842242.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
gi|265766238|ref|ZP_06094279.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
gi|52217135|dbj|BAD49728.1| DNA polymerase III epsilon chain [Bacteroides fragilis YCH46]
gi|60493760|emb|CAH08550.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
NCTC 9343]
gi|251946251|gb|EES86628.1| DNA polymerase subunit III epsilon [Bacteroides sp. 3_2_5]
gi|263253906|gb|EEZ25371.1| DNA polymerase subunit III epsilon [Bacteroides sp. 2_1_16]
gi|301163800|emb|CBW23355.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
638R]
Length = 257
Score = 41.3 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 45/206 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ N V +D ET G ++ DR + ++V + T + + +P P E+
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTL----RINPE-MPIPAESSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+ GI + D E ++ I + G+N+ RFD F R D
Sbjct: 60 VHGIY-DADVADCPTFKEVAKSIANDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD--- 113
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQD--LALAN----GIEHVN 173
+ D+ + K++ L A G +
Sbjct: 114 -IDMSKRKFVDVQVIFH----------------------KMEQRTLTAAYKFYCGRNLED 150
Query: 174 AHDAKADVYATLA--LVWLIREKKPK 197
AH A+AD AT + L ++ P+
Sbjct: 151 AHTAEADTRATYEVLMAQL--DRYPE 174
>gi|319779642|ref|YP_004130555.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
gi|317109666|gb|ADU92412.1| 3'-to-5' oligoribonuclease (orn) [Taylorella equigenitalis MCE9]
Length = 181
Score = 41.3 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ V D E G + DR + A + + +
Sbjct: 5 SHRMVWLDMEMTGLNPDQDRIIEVAVIITEADLSVVAE 42
>gi|254393010|ref|ZP_05008173.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294812789|ref|ZP_06771432.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
gi|326441260|ref|ZP_08215994.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
gi|197706660|gb|EDY52472.1| oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294325388|gb|EFG07031.1| Oligoribonuclease [Streptomyces clavuligerus ATCC 27064]
Length = 200
Score = 41.3 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 60/201 (29%), Gaps = 33/201 (16%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV- 58
M + V D E G + D + A + D + + +P D L PE V
Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALATMPEVVR 60
Query: 59 -FITGITPQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
T L G A+ R I + P + N++ D R R+
Sbjct: 61 QMHTASGLLDELAGGTTLADAEERVLAYIREHVREPGKAPLCGNSVGTD----RGFLSRD 116
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
SW + D+ V + P A N E
Sbjct: 117 M--PALESWLHY-RIVDVSSVKELARRWYPR-------------------AYFNSPEKSG 154
Query: 174 AHDAKADVYATLALVWLIREK 194
H A AD+ ++A + RE
Sbjct: 155 NHRALADIRESIAELRYYREA 175
>gi|15609648|ref|NP_217027.1| oligoribonuclease [Mycobacterium tuberculosis H37Rv]
gi|15842039|ref|NP_337076.1| oligoribonuclease [Mycobacterium tuberculosis CDC1551]
gi|31793691|ref|NP_856184.1| oligoribonuclease [Mycobacterium bovis AF2122/97]
gi|121638393|ref|YP_978617.1| oligoribonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148662347|ref|YP_001283870.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
gi|148823708|ref|YP_001288462.1| oligoribonuclease [Mycobacterium tuberculosis F11]
gi|167966612|ref|ZP_02548889.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
gi|215404448|ref|ZP_03416629.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
gi|215412277|ref|ZP_03421037.1| oligoribonuclease [Mycobacterium tuberculosis 94_M4241A]
gi|215427894|ref|ZP_03425813.1| oligoribonuclease [Mycobacterium tuberculosis T92]
gi|215431457|ref|ZP_03429376.1| oligoribonuclease [Mycobacterium tuberculosis EAS054]
gi|215446761|ref|ZP_03433513.1| oligoribonuclease [Mycobacterium tuberculosis T85]
gi|218754244|ref|ZP_03533040.1| oligoribonuclease [Mycobacterium tuberculosis GM 1503]
gi|219558511|ref|ZP_03537587.1| oligoribonuclease [Mycobacterium tuberculosis T17]
gi|224990887|ref|YP_002645574.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
gi|253798409|ref|YP_003031410.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
gi|254232640|ref|ZP_04925967.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
gi|254366813|ref|ZP_04982855.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
gi|254551558|ref|ZP_05142005.1| oligoribonuclease [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260187518|ref|ZP_05764992.1| oligoribonuclease [Mycobacterium tuberculosis CPHL_A]
gi|260201636|ref|ZP_05769127.1| oligoribonuclease [Mycobacterium tuberculosis T46]
gi|260205826|ref|ZP_05773317.1| oligoribonuclease [Mycobacterium tuberculosis K85]
gi|289444042|ref|ZP_06433786.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
gi|289448156|ref|ZP_06437900.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
gi|289553697|ref|ZP_06442907.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
gi|289570671|ref|ZP_06450898.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
gi|289575216|ref|ZP_06455443.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
gi|289746293|ref|ZP_06505671.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
gi|289751120|ref|ZP_06510498.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
gi|289754620|ref|ZP_06513998.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
gi|289758643|ref|ZP_06518021.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
gi|289762679|ref|ZP_06522057.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
gi|294994382|ref|ZP_06800073.1| oligoribonuclease [Mycobacterium tuberculosis 210]
gi|297635119|ref|ZP_06952899.1| oligoribonuclease [Mycobacterium tuberculosis KZN 4207]
gi|297732110|ref|ZP_06961228.1| oligoribonuclease [Mycobacterium tuberculosis KZN R506]
gi|298525983|ref|ZP_07013392.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
gi|306776784|ref|ZP_07415121.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
gi|306780550|ref|ZP_07418887.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
gi|306785311|ref|ZP_07423633.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
gi|306789665|ref|ZP_07427987.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
gi|306793992|ref|ZP_07432294.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
gi|306798387|ref|ZP_07436689.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
gi|306804267|ref|ZP_07440935.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
gi|306807692|ref|ZP_07444360.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
gi|306968664|ref|ZP_07481325.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
gi|306972895|ref|ZP_07485556.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
gi|307080608|ref|ZP_07489778.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
gi|307085195|ref|ZP_07494308.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
gi|313659444|ref|ZP_07816324.1| oligoribonuclease [Mycobacterium tuberculosis KZN V2475]
gi|54038785|sp|P65598|ORN_MYCBO RecName: Full=Oligoribonuclease
gi|54041582|sp|P65597|ORN_MYCTU RecName: Full=Oligoribonuclease
gi|166216268|sp|A1KLK6|ORN_MYCBP RecName: Full=Oligoribonuclease
gi|166216271|sp|A5U5K8|ORN_MYCTA RecName: Full=Oligoribonuclease
gi|3261780|emb|CAB08931.1| OLIGORIBONUCLEASE ORN [Mycobacterium tuberculosis H37Rv]
gi|13882317|gb|AAK46890.1| oligoribonuclease, putative [Mycobacterium tuberculosis CDC1551]
gi|31619284|emb|CAD97400.1| PROBABLE OLIGORIBONUCLEASE ORN [Mycobacterium bovis AF2122/97]
gi|121494041|emb|CAL72519.1| Probable oligoribonuclease orn [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124601699|gb|EAY60709.1| oligoribonuclease orn [Mycobacterium tuberculosis C]
gi|134152323|gb|EBA44368.1| oligoribonuclease orn [Mycobacterium tuberculosis str. Haarlem]
gi|148506499|gb|ABQ74308.1| oligoribonuclease [Mycobacterium tuberculosis H37Ra]
gi|148722235|gb|ABR06860.1| oligoribonuclease orn [Mycobacterium tuberculosis F11]
gi|224774000|dbj|BAH26806.1| oligoribonuclease [Mycobacterium bovis BCG str. Tokyo 172]
gi|253319912|gb|ACT24515.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 1435]
gi|289416961|gb|EFD14201.1| oligoribonuclease orn [Mycobacterium tuberculosis T46]
gi|289421114|gb|EFD18315.1| oligoribonuclease orn [Mycobacterium tuberculosis CPHL_A]
gi|289438329|gb|EFD20822.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 605]
gi|289539647|gb|EFD44225.1| oligoribonuclease orn [Mycobacterium tuberculosis K85]
gi|289544425|gb|EFD48073.1| oligoribonuclease orn [Mycobacterium tuberculosis T17]
gi|289686821|gb|EFD54309.1| oligoribonuclease [Mycobacterium tuberculosis 02_1987]
gi|289691707|gb|EFD59136.1| oligoribonuclease orn [Mycobacterium tuberculosis T92]
gi|289695207|gb|EFD62636.1| oligoribonuclease orn [Mycobacterium tuberculosis EAS054]
gi|289710185|gb|EFD74201.1| oligoribonuclease orn [Mycobacterium tuberculosis GM 1503]
gi|289714207|gb|EFD78219.1| oligoribonuclease orn [Mycobacterium tuberculosis T85]
gi|298495777|gb|EFI31071.1| oligoribonuclease orn [Mycobacterium tuberculosis 94_M4241A]
gi|308214844|gb|EFO74243.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu001]
gi|308326616|gb|EFP15467.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu002]
gi|308330038|gb|EFP18889.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu003]
gi|308333882|gb|EFP22733.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu004]
gi|308337682|gb|EFP26533.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu005]
gi|308341363|gb|EFP30214.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu006]
gi|308345880|gb|EFP34731.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu007]
gi|308349155|gb|EFP38006.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu008]
gi|308353779|gb|EFP42630.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu009]
gi|308357722|gb|EFP46573.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu010]
gi|308361662|gb|EFP50513.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu011]
gi|308365253|gb|EFP54104.1| oligoribonuclease orn [Mycobacterium tuberculosis SUMu012]
gi|323718919|gb|EGB28073.1| oligoribonuclease orn [Mycobacterium tuberculosis CDC1551A]
gi|326904125|gb|EGE51058.1| oligoribonuclease orn [Mycobacterium tuberculosis W-148]
gi|328458177|gb|AEB03600.1| oligoribonuclease orn [Mycobacterium tuberculosis KZN 4207]
Length = 215
Score = 41.3 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D +
Sbjct: 1 MQDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGD 39
>gi|84488969|ref|YP_447201.1| 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372288|gb|ABC56558.1| predicted 3'-5' exonuclease [Methanosphaera stadtmanae DSM 3091]
Length = 445
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 25/137 (18%)
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
IT I P + + E+ I + S N I+G+N I +D R
Sbjct: 53 ITKIAPHMIKQSPTLP-EYWSEISSWLS--NNVIVGHN-ITYDLRVLTKSLQR------- 101
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
+DL + ++ S+KL+++A I + N H+A
Sbjct: 102 ---------YDLEVPEFNYCC----TLTQSRKNLDLPSYKLENIAKKLHIIY-NPHNAIE 147
Query: 180 DVYATLALVWLIREKKP 196
D A L I P
Sbjct: 148 DARAAYELFEYINRHNP 164
>gi|289426433|ref|ZP_06428176.1| exonuclease [Propionibacterium acnes SK187]
gi|289153161|gb|EFD01879.1| exonuclease [Propionibacterium acnes SK187]
Length = 205
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 19/54 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
M + V D E G D+A D + A + D Q KP +L
Sbjct: 1 MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDH 54
>gi|261496609|ref|ZP_05992989.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307812|gb|EEY09135.1| exoribonuclease T [Mannheimia haemolytica serotype A2 str. OVINE]
Length = 221
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 55/190 (28%), Gaps = 30/190 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + V + F KP + +PE++ GI
Sbjct: 34 DVETAGLNAQTDALLELAAITVKMDENGYLVEDQKCHFHIKPFEGANINPESLKFNGIDI 93
Query: 66 QKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR--NFYDS 117
LR V E E + + + II +N FD + + R D
Sbjct: 94 DNPLRGAVAENIAIPEMFKMVRRAMKEQGCQRAIIVAHNATFDQSFLQAAIKRINAKRDP 153
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ + + D + K A N + AH A
Sbjct: 154 FH--------PFAMFDTATLAGFMYGQTVLV----------KACQAAQIN-FDGHQAHSA 194
Query: 178 KADVYATLAL 187
D T L
Sbjct: 195 LYDTEKTTEL 204
>gi|295131162|ref|YP_003581825.1| Oligoribonuclease [Propionibacterium acnes SK137]
gi|291377019|gb|ADE00874.1| Oligoribonuclease [Propionibacterium acnes SK137]
Length = 205
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 19/54 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
M + V D E G D+A D + A + D Q KP +L
Sbjct: 1 MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDH 54
>gi|167854538|ref|ZP_02477319.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Haemophilus parasuis 29755]
gi|219872178|ref|YP_002476553.1| ribonuclease T [Haemophilus parasuis SH0165]
gi|167854293|gb|EDS25526.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Haemophilus parasuis 29755]
gi|219692382|gb|ACL33605.1| ribonuclease T [Haemophilus parasuis SH0165]
Length = 216
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + D + ++ KP ++ +PEA+ + GI
Sbjct: 25 DVETGGLNAQTDALLEIAAITLKMDDDGYLHLDEKFHRHVKPFENANINPEALKVNGIDV 84
Query: 66 QKALRDGVVE----AEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYR--NFYDS 117
A R V E E + + + +I +N FD + + R D
Sbjct: 85 DNAERGAVPEDIAITEMFKMVRKAVKDNGCQRAVIVAHNATFDQAFLQAAVKRINTKRDP 144
Query: 118 Y 118
+
Sbjct: 145 F 145
>gi|302551620|ref|ZP_07303962.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
gi|302469238|gb|EFL32331.1| oligoribonuclease [Streptomyces viridochromogenes DSM 40736]
Length = 200
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G ++ D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDRAL 52
>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus coleohominis 101-4-CHN]
gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type
[Lactobacillus coleohominis 101-4-CHN]
Length = 1448
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 29/185 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDR-QWEKIESTEVFFCKPADDYLPDPEAVF 59
+ + +VI+D ET G D+ + + + ++ + F + +
Sbjct: 424 LNSTYVIFDVETTGLSAIYDKVIELSA--TKMKDGKVLDRFDEF---IDPGFPLSEQTTE 478
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+T IT E F ++ Q F + I G+N + FD + + R+
Sbjct: 479 LTSITDDMVQGSKSEEEVF--KMFQDFCA-GSIIAGHN-VSFDMGFMNTGYQRHHLPEI- 533
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
++D + PD ++L L+ + + H A
Sbjct: 534 --------TQPVIDTLPLARFLYPDL----------RGYRLNTLSKKFKVSLEHHHRANY 575
Query: 180 DVYAT 184
D AT
Sbjct: 576 DAEAT 580
>gi|217032955|ref|ZP_03438429.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
gi|216945324|gb|EEC23998.1| hypothetical protein HPB128_182g9 [Helicobacter pylori B128]
Length = 287
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 57/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 73 FSFIDLETTGSCPIKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L V E + + F N+ + +N FD + F +
Sbjct: 127 TYEDTLNAPSVH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|218295641|ref|ZP_03496437.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
gi|218243800|gb|EED10327.1| putative PAS/PAC sensor protein [Thermus aquaticus Y51MC23]
Length = 627
Score = 41.3 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 34/186 (18%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGITPQ 66
+D ET G D D V + ++ EV+ P P+A + G+T +
Sbjct: 446 FDLETTGLDPREDAIIALGAVHLLGS--RVLRHEVYEALVDPGR-PIPKASTEVHGLTWE 502
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+E E F + ++ +N FD + R +
Sbjct: 503 MLKDKPKLE-EVLPAFRAFL--EGSVLVAHNG-AFDMAFLRKVGID--QPP--------- 547
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
L+D + + PD +D +L+ LA G+ + H A D T
Sbjct: 548 ----LVDTLLLAHLLFPD-----LKDH-----RLERLAERFGVPVLGRHTALGDALMTAE 593
Query: 187 L-VWLI 191
+ +I
Sbjct: 594 VYARMI 599
>gi|332525250|ref|ZP_08401423.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
gi|332108532|gb|EGJ09756.1| oligoribonuclease [Rubrivivax benzoatilyticus JA2]
Length = 186
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 42/203 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--I 60
+ + D E G A DR + A V D Q VF +D L +A
Sbjct: 11 QNLIWIDLEMTGLYPATDRIIEIAVVVTDPQLTVRVEGPVFAVHQSDATLDAMDAWNKGT 70
Query: 61 TGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIFYR 112
G + + V EAE R +F C N+I D F
Sbjct: 71 HGRSGLIDRVKASTVDEAEAEARTIEFLQRYVPRGKSPMCG---NSICQD-----RRFLA 122
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
N+ + N D+ + + P+ + G +
Sbjct: 123 NYMPKLEAFFHYRN--LDVSTLKELARRWKPEVLD--------------------GFKKA 160
Query: 173 NAHDAKADVYATLALVWLIREKK 195
AH A AD++ ++ L+ ++
Sbjct: 161 QAHTALADIHESID--ELLHYRQ 181
>gi|170696330|ref|ZP_02887460.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
C4D1M]
gi|170138736|gb|EDT06934.1| Exonuclease RNase T and DNA polymerase III [Burkholderia graminis
C4D1M]
Length = 203
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 42/201 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G D DR + A V + +++ V +D+ L A
Sbjct: 19 NLVWLDMEMTGLDPDSDRIIEIAVVVTNSTLDRMAEGPVLAIHQSDETL----AKMDQWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYR 112
G + + V E E + +I F + P + N+I D F
Sbjct: 75 QNTHGRSGLIDRVKASTVSEIEATEQIRAFLAQYVPPGKSPMCGNSICQD-----RRFMA 129
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + N D+ + + P + G +
Sbjct: 130 RWMPELETFFHYRN--LDVSTLKELCRRWQPAIYK--------------------GFQKR 167
Query: 173 NAHDAKADVYATLALVWLIRE 193
H A AD++ ++ + RE
Sbjct: 168 AMHTALADIHESIDELKYYRE 188
>gi|121705836|ref|XP_001271181.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
gi|119399327|gb|EAW09755.1| RNA exonuclease Rex2, putative [Aspergillus clavatus NRRL 1]
Length = 217
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
T+ V D E G D D+ Q D ++
Sbjct: 7 TDPLVWIDCEMTGLDPETDQILQICCYITDANLTLLDR 44
>gi|221133715|ref|ZP_03560020.1| oligoribonuclease [Glaciecola sp. HTCC2999]
Length = 191
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 16/50 (32%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G D + A + D Q + V DD L
Sbjct: 16 QNLIWIDMEMTGLDPEECVVLEIATIVTDAQLNILAEGPVIAIYQPDDVL 65
>gi|94263435|ref|ZP_01287248.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
gi|94270278|ref|ZP_01291698.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
gi|93450870|gb|EAT01889.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
gi|93456165|gb|EAT06304.1| DNA polymerase III, epsilon subunit [delta proteobacterium MLMS-1]
Length = 238
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D E G D D VR++ + T KP+ LP ++ I +
Sbjct: 40 FVVFDTELTGLDRRRDEIVSIGAVRIN-NLRIMVGDTFYVQVKPSQ-ALPK-DSTLIHRL 96
Query: 64 TPQKALR 70
TP +
Sbjct: 97 TPHQLSD 103
>gi|241763009|ref|ZP_04761071.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
2AN]
gi|241367961|gb|EER62180.1| Exonuclease RNase T and DNA polymerase III [Acidovorax delafieldii
2AN]
Length = 179
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 56/201 (27%), Gaps = 36/201 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEA 57
M H++ D ET G VD + PEA
Sbjct: 1 MREHYISVDVETSGPIPGEFSMLSLGASVVDDDGKTFHVQIKPLNRNAV--------PEA 52
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFS--VPN---TCIIGYNNIRFDDYYSRNIFYR 112
+ +TG++ + G A + PN +G N FD + F R
Sbjct: 53 LAVTGLSLETLECHGTEPAIAMENFASWLEGVRPNGIKPVFVGLNA-PFDWSFVNYYFVR 111
Query: 113 -NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
+ + ++ D+ + G W + +L L G
Sbjct: 112 FCGSNPFGYT------ALDIKAMYMGA-----TGCTWSQTTSSQMAKRL--LPKRKG--- 155
Query: 172 VNAHDAKADVYATLALVWLIR 192
H+A D L L+R
Sbjct: 156 --THNALDDALYQAELFRLVR 174
>gi|161170263|gb|ABX59233.1| polymerase III epsilon subunit uncultured proteobacterium
[uncultured marine bacterium EB000_55B11]
gi|297183792|gb|ADI19915.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 230
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+++D ET G D A DR + V +++ + P D +P P A + G++
Sbjct: 4 IVWDTETTGFDPFAGDRIVEIGAVELNQHL-PTGRVYHQYINPERD-MP-PGAFEVHGLS 60
Query: 65 PQKA 68
Sbjct: 61 IDFL 64
>gi|296135421|ref|YP_003642663.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
K12]
gi|295795543|gb|ADG30333.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia
K12]
Length = 203
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 59/210 (28%), Gaps = 58/210 (27%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFI- 60
++ + D E G + DR + A V D Q +E A +AV
Sbjct: 17 DNLIWVDMEMTGLNPDTDRIIEVAVVVTDPQLTVRVEGPV-----LAIH---QSDAVLAG 68
Query: 61 -----------TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDD 103
+G+T + V EA+ S+ I F C N I D
Sbjct: 69 MDAWNQNTHGKSGLT-DRVRTSTVDEAQASKAIIAFLKKYVPAGKSPMCG---NTICQD- 123
Query: 104 YYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
F + N D+ + + P+ + +
Sbjct: 124 ----RRFMARGMPELETYFHYRN--LDVSTLKELARRWRPELVSAFKK------------ 165
Query: 164 ALANGIEHVNAHDAKADVYATLALVWLIRE 193
AH A AD+ ++ + RE
Sbjct: 166 --------QQAHTALADIQESIDELRHYRE 187
>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
Length = 247
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 59/187 (31%), Gaps = 41/187 (21%)
Query: 9 DYETFGRD----VALD--RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVF 59
D ET G + + R + V E I F D DPEA+
Sbjct: 12 DTETTGMNREGGPHYEGHRIIEIGAV------EIINRKLTGRHFHVYIKPDREIDPEAIS 65
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GIT + LRD A+ IH F ++ +N FD + + F D
Sbjct: 66 VHGIT-DEFLRDKPSYAD----IHAEFLEFIKGAELVAHNA-PFDTGFMDHEF--QMLDP 117
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAH 175
+ D L + + I+ P + + L L GI H H
Sbjct: 118 SIGKTGDFCKVTDTLAMAKKIF---------PGKRNN-----LDVLCERYGIDNSHRTLH 163
Query: 176 DAKADVY 182
A D
Sbjct: 164 GALLDAE 170
>gi|296170420|ref|ZP_06852008.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295894891|gb|EFG74612.1| oligoribonuclease [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 215
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D +
Sbjct: 1 MRDELVWIDCEMTGLDLGTDKLIEIAALVTDADLNILGD 39
>gi|238895034|ref|YP_002919768.1| ribonuclease T [Klebsiella pneumoniae NTUH-K2044]
gi|238547350|dbj|BAH63701.1| ribonuclease T [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 197
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + + T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEHGWLMP-DETLHFHVEPFEGANLQPEALAFNGIN 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E + I + + I+ +N FD ++ R RN
Sbjct: 82 PHDPQRGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFVT 148
>gi|149408370|ref|YP_001294473.1| hypothetical protein ORF056 [Pseudomonas phage F8]
gi|219523927|ref|YP_002455988.1| hypothetical protein PB1_gp58 [Pseudomonas phage PB1]
gi|190333523|gb|ACE73778.1| conserved hypothetical protein [Pseudomonas phage PB1]
Length = 184
Score = 41.3 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 22/120 (18%)
Query: 5 FVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
F ++D ET G R +FAGV D + I F C + +
Sbjct: 3 FAVWDTETTGL-PFHQRVSLRKQPRIIEFAGVITDGE--TILDEVEFIC--NPGIVIEE- 56
Query: 57 AVFITGITPQKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
IT IT D + F +++ FFS + I +N+ FD + R
Sbjct: 57 --IITKIT-GLKNEDLIKHPSFLDQRQKVRDFFSKADANIA--HNLPFDKFMLTCDLARG 111
>gi|327537942|gb|EGF24639.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica WH47]
Length = 355
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 56/173 (32%), Gaps = 31/173 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D+ET D Q A VRV +I + + +P ++ P + I GITP
Sbjct: 7 DFET--ATRRSDSACQLAAVRVRGG--EIVDSACWLIRPRP-FVFSPANIQIHGITPGMV 61
Query: 69 LRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E EF + S C+I +N FD +
Sbjct: 62 RE----EPEFGELWPEIQSTLGDDCLIAHNA-SFDLGVL-MACLESHDHPVP-------- 107
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
D+ A WP + F L+ L+ GI + HDA D
Sbjct: 108 --DMQYSCTRAIARR----TWPQQ----PRFGLKPLSDWLGIRFRH-HDALED 149
>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium
siraeum 70/3]
Length = 1605
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 28/185 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +++D ET G A +R + V++ R E ++ F +P +TG
Sbjct: 589 DDIIVFDIETTGLHPANERITEIGAVKL-RNMEIVDRFSTFVNPMMP--IPS-NITELTG 644
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + D E F C +N +FD + R+ R S+
Sbjct: 645 IT-DDMVADAPTEDVAVSDFMAFCGNSPVCA---HNAKFDVSFIRSAATR-----MGKSF 695
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
DN D L + +A G ++KL +A + + H A AD
Sbjct: 696 DNPV--VDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVADAE 740
Query: 183 ATLAL 187
+
Sbjct: 741 MLCMI 745
>gi|282865023|ref|ZP_06274076.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp.
ACTE]
gi|282559946|gb|EFB65495.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp.
ACTE]
Length = 201
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G +A D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLADDALIEVAALVTDSELNVLGDGVDIVIRPPDAAL 52
>gi|32477333|ref|NP_870327.1| DNA polymerase III subunit epsilon [Rhodopirellula baltica SH 1]
gi|32447884|emb|CAD77402.1| probable DNA polymerase III polC-type [Rhodopirellula baltica SH 1]
Length = 355
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 56/173 (32%), Gaps = 31/173 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D+ET D Q A VRV +I + + +P ++ P + I GITP
Sbjct: 7 DFET--ATRRSDSACQLAAVRVRGG--EIVDSACWLIRPRP-FVFSPANIQIHGITPGMV 61
Query: 69 LRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
E EF + S C+I +N FD +
Sbjct: 62 RE----EPEFGELWPEIQSTLGDDCLIAHNA-SFDLGVL-MACLESHDHPVP-------- 107
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
D+ A WP + F L+ L+ GI + HDA D
Sbjct: 108 --DMQYSCTRAIARR----TWPQQ----PRFGLKPLSDWLGIRFRH-HDALED 149
>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
Length = 1369
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FV +D ET G D + A V++ + +++ P +TGIT
Sbjct: 354 FVFFDLETTGLIPGKDNIIEIAAVKI-KNKHIVDTFSKI---VNPHRPIPPFITNLTGIT 409
Query: 65 PQKALRDGVVE 75
Q DG E
Sbjct: 410 NQMV-EDGEEE 419
>gi|296269280|ref|YP_003651912.1| DNA polymerase III subunit epsilon [Thermobispora bispora DSM
43833]
gi|296092067|gb|ADG88019.1| DNA polymerase III, epsilon subunit [Thermobispora bispora DSM
43833]
Length = 574
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 57/192 (29%), Gaps = 41/192 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGV-----RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
FV++D ET G A D + V +V ++ + +P P
Sbjct: 19 TFVVFDLETTGGSPAEDAITEIGAVKVCGGQVRGEFATLIDPG----RPIP-----PFIS 69
Query: 59 FITGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+TGIT + + F F T + +N FD + R Y
Sbjct: 70 VLTGITDAMVVAAPKLPQVLPAFL-----EFIRGATLVA--HNAPFDLGFLRAACAEYGY 122
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
N D D+ R + D KL LA H
Sbjct: 123 PPPA------NPVVDTADLARRM-----------LTRDETPDCKLATLARYFRSATEPCH 165
Query: 176 DAKADVYATLAL 187
A AD AT+ +
Sbjct: 166 RALADARATVDV 177
>gi|218904738|ref|YP_002452572.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH820]
gi|218538798|gb|ACK91196.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH820]
Length = 315
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPKRPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + A ++KL+ L GI + H+A
Sbjct: 114 --EPKNK-----VIDTVFLA----------KKYMKHAPNYKLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
700633]
gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
700633]
Length = 1441
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 31/187 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V++D ET G D + A V++ + I+ E F + + +TGI
Sbjct: 425 TYVVFDVETTGLSAIYDSIIELAAVKMHKG-NVIDKFEEF---IDPGHPLSATTIQLTGI 480
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T +R +A ++ + F+ +T ++ +N FD + + + +
Sbjct: 481 T-DDMVRGSKSQA----QVLKEFAAFTKDTILVAHNA-SFDMGFLNTGYEKEGLEK---- 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ ++D + P S +L LA + H A D
Sbjct: 531 -----TTQPVIDTLELSRLLHPHL----------KSHRLNTLAKRYNVALEQHHRAVFDS 575
Query: 182 YATLALV 188
T L
Sbjct: 576 ETTGHLC 582
>gi|197261475|ref|YP_002154290.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
LMA2]
gi|197244565|emb|CAR31299.1| putative DNA polymerase III, epsilon subunit [Pseudomonas phage
LMA2]
Length = 184
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 22/120 (18%)
Query: 5 FVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
F ++D ET G R +FAGV D + + ++ E F C + +
Sbjct: 3 FAVWDTETTGL-PFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEE- 56
Query: 57 AVFITGITPQKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
IT IT D + F +++ FFS + I +N+ FD + R
Sbjct: 57 --IITKIT-GLKNEDLIKHPSFLDQRQKVRDFFSRADANIA--HNLPFDKFMLTCDLARG 111
>gi|156551267|ref|XP_001600928.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
Length = 224
Score = 41.3 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKP 47
N V D E G DV +R + A + D I + + +P
Sbjct: 44 NGIVWIDMEMSGLDVDKNRILEIACLITDENLNVISDEFQAVLYQP 89
>gi|281355577|ref|ZP_06242071.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
BAA-548]
gi|281318457|gb|EFB02477.1| DNA polymerase III, epsilon subunit [Victivallis vadensis ATCC
BAA-548]
Length = 268
Score = 41.3 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 13/114 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D E+ G DR + A +++ T+ + + P A I GI+
Sbjct: 11 LVVFDIESTGVMPQRDRIVEIAVLKIFPD----GHTQNTVRRLNPEMPIPPGATAIHGIS 66
Query: 65 ---PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
++ + R I + GYN FD F R +
Sbjct: 67 DADVADCPTFLLIAEKLFRYIED------CDLAGYNITGFDIPMLEAEFKRAGF 114
>gi|305667754|ref|YP_003864041.1| putative DNA polymerase III subunit epsilon [Maribacter sp.
HTCC2170]
gi|88707591|gb|EAQ99833.1| putative DNA polymerase III epsilon chain [Maribacter sp. HTCC2170]
Length = 258
Score = 41.3 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +D ET G +VA DR + + ++V + ++ + P D +P E + I
Sbjct: 5 LTRPICFFDLETTGTNVAHDRIVEISILKVFPNGN--KESKTWLVNPEKD-IPA-EVIAI 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFD-----DYYSR 107
GI+ E F + + + + G+N+ RFD + R
Sbjct: 61 HGIS----NEKVANEPTFKELSKEVYLMIKDCDLGGFNSNRFDIPLLAEEMLR 109
>gi|311104954|ref|YP_003977807.1| oligoribonuclease [Achromobacter xylosoxidans A8]
gi|310759643|gb|ADP15092.1| oligoribonuclease [Achromobacter xylosoxidans A8]
Length = 181
Score = 41.3 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 54/208 (25%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF--- 59
N V D E G D +R + A V + + V + P+++
Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVL-------VVHQPDSLLDAM 58
Query: 60 ------ITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYY 105
G + K + E+E + F + C N I D
Sbjct: 59 DSWNKSTHGKSGLIDKVKASTISESEAEDTLLAFLAQHVPAGKSPLCG---NTISQDR-- 113
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
R +F + + N D+ + ++P +
Sbjct: 114 -RFMF--AYMPRLEQFFHYRN--LDVSTLKELARRWAPAVYK------------------ 150
Query: 166 ANGIEHVNAHDAKADVYATLALVWLIRE 193
G E + H+A AD+Y ++ + RE
Sbjct: 151 --GFEKKSRHEALADIYESIDELKYYRE 176
>gi|311740325|ref|ZP_07714155.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304608|gb|EFQ80681.1| DNA polymerase III PolC-type [Corynebacterium pseudogenitalium ATCC
33035]
Length = 229
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 40/199 (20%), Positives = 64/199 (32%), Gaps = 42/199 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-----VF 59
F + D ET G + DR + A R D + ++ L +P+
Sbjct: 31 FAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQW---------HTLINPDGKQIKNSH 81
Query: 60 ITGIT-PQKALRDGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
I GIT A E EF+ R+ ++ +N FD
Sbjct: 82 IHGITNADVAHAPTFPEVYTEFAARVDGM-------VLMAHNAPFDSKM--------ILA 126
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+G +Y D I + S+KL L G+ + +H
Sbjct: 127 EAERITPDGED----------VYFPFVDTIALAKQMVSLRSYKLSALLDHVGLHNPQSHA 176
Query: 177 AKADVYATLALVWLIREKK 195
A AD AT ++ + K+
Sbjct: 177 AIADATATGQMLNKLFGKE 195
>gi|302534542|ref|ZP_07286884.1| oligoribonuclease [Streptomyces sp. C]
gi|302443437|gb|EFL15253.1| oligoribonuclease [Streptomyces sp. C]
Length = 200
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 18/52 (34%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G + D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLTDDALIEVAALVTDSELNVLGEGVDIVIRPPDAAL 52
>gi|289640817|ref|ZP_06472988.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
glomerata]
gi|289509393|gb|EFD30321.1| DNA polymerase III, epsilon subunit [Frankia symbiont of Datisca
glomerata]
Length = 629
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 25/191 (13%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G A + V++ ++ + +P D P +TGI
Sbjct: 92 TFVVVDLETTGSRAADSEITEIGAVKIRGG--EVLAELATLVRP--DAPIPPFISVLTGI 147
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T A+ + + F+ + ++ +N FD + R R + W
Sbjct: 148 T--DAMVATAPRIDAALPTFLEFAH-GSVLVAHNA-PFDLGFLREACVRCGHPVPDWE-- 201
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D L + R + D KL LA + H A AD A
Sbjct: 202 ----HLDTLRIARQV-----------LGRDETPDHKLASLARLFPADAGPCHRALADARA 246
Query: 184 TLALVWLIREK 194
T+A++ + E+
Sbjct: 247 TVAVLHGLFER 257
>gi|87121900|ref|ZP_01077785.1| oligoribonuclease [Marinomonas sp. MED121]
gi|86162698|gb|EAQ63978.1| oligoribonuclease [Marinomonas sp. MED121]
Length = 183
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D + + A + D+ +
Sbjct: 6 ENLIWIDLEMTGLDPEKNTIIEIATIVTDKHLNVLSE 42
>gi|319787041|ref|YP_004146516.1| exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
suwonensis 11-1]
gi|317465553|gb|ADV27285.1| Exonuclease RNase T and DNA polymerase III [Pseudoxanthomonas
suwonensis 11-1]
Length = 189
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 10 LIWIDLEMTGLDTDRDSILEIATVVTDAQLNVLAE 44
>gi|294339527|emb|CAZ87886.1| oligoribonuclease [Thiomonas sp. 3As]
Length = 203
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQW 34
++ + D E G + DR + A V D Q
Sbjct: 17 DNLIWVDMEMTGLNPDTDRIIEVAVVVTDPQL 48
>gi|37677065|ref|NP_937461.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
gi|37201610|dbj|BAC97431.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
Length = 239
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 64/196 (32%), Gaps = 24/196 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
F+ D+ET G D D+ V D E I + E+ I G+
Sbjct: 52 SFLALDFETTGLDAKHDKILSIGMV--DLTLEGINLSSAEEILLNHGAYIKAESARINGL 109
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TPQ + +E R + ++ ++ I F + F +
Sbjct: 110 TPQALEQGCSLEQGMMRLFERA---QGKVLLAHSAI------IEQGFLQAFAQQHFQLAK 160
Query: 124 NGNSRWDLLDVMRAI-YAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + + YA + +SF+L DL + ++H A +D
Sbjct: 161 LPCHFVDTLQIEKRFSYA---------GKSGQRSSFQLDDLRRCYHLPDYHSHSAASDA- 210
Query: 183 ATLALVWLIREKKPKL 198
LA L + KL
Sbjct: 211 --LACAELFIVQSKKL 224
>gi|226330322|ref|ZP_03805840.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
gi|225201117|gb|EEG83471.1| hypothetical protein PROPEN_04236 [Proteus penneri ATCC 35198]
Length = 212
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + + F +P + +P A+ TGI P
Sbjct: 23 DVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVEPFEGANLEPAALEFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + N II +N FD + R RN
Sbjct: 83 TNPLRGAVSEYEALHAIFKMVRKGMKDADCNRAIIVAHNANFDHSFVMAAAERAGLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|46198769|ref|YP_004436.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
HB27]
gi|55980782|ref|YP_144079.1| DNA polymerase III subunit epsilon-like protein [Thermus
thermophilus HB8]
gi|46196392|gb|AAS80809.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
HB27]
gi|55772195|dbj|BAD70636.1| DNA polymerase III epsilon chain-like protein [Thermus thermophilus
HB8]
Length = 624
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 41/197 (20%), Positives = 63/197 (31%), Gaps = 34/197 (17%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D D AGV V ++ EVF P A + G+T +
Sbjct: 443 FDLETTGLDPEQDAVVALAGVHVLG--RRVLRQEVFEALVNPGRPISPAATAVHGLTAEM 500
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+EA + F +T ++ +N FD + R
Sbjct: 501 LRDKPPLEAVLPA--FRAFVQ-DTVLVAHNG-AFDLAFLRRA------------------ 538
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
LD + + +P D ++L+ LA G+ H A D T
Sbjct: 539 ---GLDQPPLLDTLLLAQLLFPDLKD----YRLEALAHRFGVPATGRHTALGDALMT--- 588
Query: 188 VWLIREKKPKLFEYLYD 204
+ +P LFE
Sbjct: 589 AEVFVRMQPLLFERGLK 605
>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
Length = 243
Score = 41.3 bits (96), Expect = 0.38, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 20/87 (22%)
Query: 9 DYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVF 59
D ET G + R + V E I F D P+A+
Sbjct: 16 DTETTGMNREGGPHYMGHRIIEIGAV------EIINRKLTGRHFHVYLKPDREIQPDAID 69
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF 86
+ GIT Q + E R++HQ F
Sbjct: 70 VHGITDQFLVDK--PEY---RQVHQEF 91
>gi|163783396|ref|ZP_02178388.1| type III restriction enzyme R protein [Hydrogenivirga sp.
128-5-R1-1]
gi|159881318|gb|EDP74830.1| type III restriction enzyme R protein [Hydrogenivirga sp.
128-5-R1-1]
Length = 993
Score = 40.9 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 330 LLRQQTNLRDRFKAIYNKPYTSSSQD-VDSQLYDGFFADVD-RQIMDRILRTAPEQLSTL 387
LL+ + L+++ + + + + QD + L G + + R+ D + R +P +
Sbjct: 752 LLKDISELKEKIQQVQSYRDPTEEQDKLIQDLQRGQISPEEFRRRYDELSRRSPREFFEH 811
Query: 388 NLPFSDRRLPELFFRYRARNF--PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSG 445
+L R+ A ++ P LSE E+ DW+ H ++ E+ NKL+
Sbjct: 812 EE-------KQLQIRHIASHYYLPVLLSENERIDWIRH---VIRHPSEVEFLNKLEQYLE 861
Query: 446 EYKG 449
+
Sbjct: 862 QPDN 865
>gi|261838819|gb|ACX98585.1| DNA polymerase III epsilon subunit [Helicobacter pylori 51]
Length = 323
Score = 40.9 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 162
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 163 TYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 212
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 213 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 256
Query: 182 YATLAL 187
A+ L
Sbjct: 257 LASYKL 262
>gi|259486196|tpe|CBF83844.1| TPA: RNA exonuclease Rex2, putative (AFU_orthologue;
AFUA_3G11820) [Aspergillus nidulans FGSC A4]
Length = 194
Score = 40.9 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
T+ V D E G D D Q D ++
Sbjct: 7 TDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLD 43
>gi|114769767|ref|ZP_01447377.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
exonuclease [alpha proteobacterium HTCC2255]
gi|114549472|gb|EAU52354.1| putative DNA polymerase III, epsilon subunit and related 3'-5'
exonuclease [alpha proteobacterium HTCC2255]
Length = 230
Score = 40.9 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 6 VIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+++D ET G D A DR + V +++ + P D +P P A + G++
Sbjct: 4 IVWDTETTGFDPFAGDRIVEIGAVELNQHL-PTGRVYHQYINPERD-MP-PGAFEVHGLS 60
Query: 65 PQKA 68
Sbjct: 61 IDFL 64
>gi|67524821|ref|XP_660472.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
gi|40744263|gb|EAA63439.1| hypothetical protein AN2868.2 [Aspergillus nidulans FGSC A4]
Length = 802
Score = 40.9 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
T+ V D E G D D Q D ++
Sbjct: 615 TDPLVWIDCEMTGLDPTTDHILQICCFITDADLNLLD 651
>gi|266619529|ref|ZP_06112464.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
gi|288868940|gb|EFD01239.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
Length = 235
Score = 40.9 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
M N +V D ET G D D+ + VR++ E E F
Sbjct: 1 MVNSYVAVDLETTGLDPKRDKIIEIGAVRIEAG-EITAEFESF 42
>gi|90408002|ref|ZP_01216174.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
gi|90310846|gb|EAS38959.1| putative DNA polymerase III [Psychromonas sp. CNPT3]
Length = 210
Score = 40.9 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 75/257 (29%), Gaps = 73/257 (28%)
Query: 2 TNHFVIYDYETFGRDVAL-DRPAQFAGVR------VDRQWEKIESTEVFFCKPADDYLPD 54
+ V+ D+ET G DR + VR D Q++ + + + +DY
Sbjct: 6 ADTIVVLDFETTGLSPNQGDRAIEIGAVRIVNGEVTD-QFQALMNPGIRVNSFIEDY--- 61
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
TGIT + EA + F IG +N+ + F N
Sbjct: 62 ------TGIT-----NHMLKEAASCSDVMAQFCD----FIGDDNLLAHNASFDKKFLDNE 106
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVN 173
D ++ I S+ + K +L+ G
Sbjct: 107 LDEISRTYQGE----------FTCSLLVSRRINIDSQSHSLGNLVKQLNLSEEGGF---- 152
Query: 174 AHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS 233
H A D T KL+ ++ D +S +G
Sbjct: 153 -HRALFDAQMT-----------AKLWLHMLDN--------------------ISQTYGIK 180
Query: 234 RSNTALIAPVAWHPRYK 250
R +L+ +A P+ K
Sbjct: 181 RPLFSLMQQIANTPKNK 197
>gi|315055429|ref|XP_003177089.1| oligoribonuclease [Arthroderma gypseum CBS 118893]
gi|311338935|gb|EFQ98137.1| oligoribonuclease [Arthroderma gypseum CBS 118893]
Length = 188
Score = 40.9 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPADDYLPDPEA-V 58
++ V D E G D A D Q D Q +E EV D L A
Sbjct: 7 SDPLVWIDCEMTGLDPANDHIMQVCCYITDAQLNLLEPKGFEVI-VHLPQDILDRMNAWC 65
Query: 59 FIT----GITPQKALRDGVVEAEFS---RRIHQFFSVPNTCIIGYNNIRFDDYYS 106
T G+T E + I Q T ++ N++ D +
Sbjct: 66 TATHGRSGLTAAVLSATTTAEEAANGLLAYIKQHVPKQGTALLAGNSVHADRAFL 120
>gi|254583524|ref|XP_002497330.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
gi|238940223|emb|CAR28397.1| ZYRO0F03036p [Zygosaccharomyces rouxii]
Length = 251
Score = 40.9 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 15/120 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFC------KPADDYLPDP 55
V D E G D DR + + D +++ V C + +
Sbjct: 40 LVWVDCEMTGLDHNSDRIIEICCIITDGHLSVVDNNCYESVIHCDKSILDQMGPWCVEHH 99
Query: 56 EAVFITGITPQKALRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
+ +G+T + D VE E + I ++ P T ++ N+I D + F R
Sbjct: 100 GS---SGLTQKVLDSDKTREQVEEELLQFIRKYVPEPRTGVLSGNSIHMDRLFMLKDFPR 156
>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Lutiella nitroferrum 2002]
Length = 242
Score = 40.9 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 9 DYETFGRDVALD-RPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
D ET G + + R +FAG+ V+R+ + + P D DP+A + GI+
Sbjct: 7 DTETTGLEPSQGHRIIEFAGLEMVNRKLT--GRSLHLYIHPERDI--DPDAERVHGISLD 62
Query: 67 KALRD------GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
G A+F R + +G+ N FD
Sbjct: 63 FLADKPRFAAVGPEIADFLRD-AELIIHNAPFDVGFLNAEFD 103
>gi|197285252|ref|YP_002151124.1| ribonuclease T [Proteus mirabilis HI4320]
gi|227355678|ref|ZP_03840072.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
gi|194682739|emb|CAR42945.1| ribonuclease T [Proteus mirabilis HI4320]
gi|227164285|gb|EEI49178.1| exoribonuclease T [Proteus mirabilis ATCC 29906]
Length = 212
Score = 40.9 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + + F P + +P A+ TGI P
Sbjct: 23 DVETGGFNAKTDGLLEIAAITLKMDEQGWLKPDNTLHFHVDPFEGANLEPAALEFTGIDP 82
Query: 66 QKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + N II +N FD + R RN
Sbjct: 83 TNPLRGAVSEYEALHAIFKMVRKGMKDANCNRAIIVAHNANFDHSFVMAAAERAGLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|114319829|ref|YP_741512.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114226223|gb|ABI56022.1| putative PAS/PAC sensor protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 719
Score = 40.9 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 47/198 (23%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRV-------DRQWEKIESTEVFFCKPADDYLPDPEA 57
V++D ET G A D VR+ D +E++ C+ D A
Sbjct: 525 VVFDTETTGLSPARGDEIIAIGAVRLVNGRVLQDEYFEQLVKP----CRAIPD-----SA 575
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD- 116
GI+ + R E R F + ++ +N FD + R R
Sbjct: 576 TRFHGISNEDVAR--APEIGPVLRAFSRFIGEESVLVAHNA-AFDMGFLRRAQARAGLAF 632
Query: 117 --SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
D L + ++ SPD L+ +A G+E
Sbjct: 633 PQPVL----------DTLLLSVYLHDHSPDHT-------------LEGVAERLGVEVQKR 669
Query: 175 HDAKADVYATLAL-VWLI 191
H A AD T + +I
Sbjct: 670 HSALADARVTADVFARMI 687
>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
Length = 247
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 20/87 (22%)
Query: 9 DYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVF 59
D ET G + R + V E I F D PEAV
Sbjct: 16 DTETTGMNQEGGPHYLGHRIIEIGAV------EIINRKLTGRHFHVYIKPDRQIQPEAVL 69
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF 86
+ GIT + + E + +HQ F
Sbjct: 70 VHGITDEFLVDK--PEY---QDVHQEF 91
>gi|195145416|ref|XP_002013689.1| GL24271 [Drosophila persimilis]
gi|198452116|ref|XP_001358637.2| GA10162 [Drosophila pseudoobscura pseudoobscura]
gi|194102632|gb|EDW24675.1| GL24271 [Drosophila persimilis]
gi|198131794|gb|EAL27778.2| GA10162 [Drosophila pseudoobscura pseudoobscura]
Length = 187
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPD 54
V D E G DV D+ + + + D+ I E + + +
Sbjct: 14 LVWMDLEMTGLDVDTDKILEVSCIITDKDLNIKSEGPCFAINYPEDVYKNMNEWCIKH 71
>gi|22125847|ref|NP_669270.1| ribonuclease T [Yersinia pestis KIM 10]
gi|45441960|ref|NP_993499.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
gi|149365707|ref|ZP_01887742.1| ribonuclease T [Yersinia pestis CA88-4125]
gi|218929473|ref|YP_002347348.1| ribonuclease T [Yersinia pestis CO92]
gi|229837906|ref|ZP_04458065.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229895067|ref|ZP_04510244.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
gi|229898469|ref|ZP_04513615.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
India 195]
gi|229902309|ref|ZP_04517429.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
gi|24638167|sp|Q8ZE08|RNT_YERPE RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|21958778|gb|AAM85521.1|AE013798_8 RNase T, degrades tRNA [Yersinia pestis KIM 10]
gi|45436823|gb|AAS62376.1| ribonuclease T [Yersinia pestis biovar Microtus str. 91001]
gi|115348084|emb|CAL21010.1| ribonuclease T [Yersinia pestis CO92]
gi|149292120|gb|EDM42194.1| ribonuclease T [Yersinia pestis CA88-4125]
gi|229680644|gb|EEO76740.1| ribonuclease T (RNase T) [Yersinia pestis Nepal516]
gi|229688513|gb|EEO80583.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
India 195]
gi|229694272|gb|EEO84319.1| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229701955|gb|EEO89977.1| ribonuclease T (RNase T) [Yersinia pestis Pestoides A]
gi|320015036|gb|ADV98607.1| ribonuclease T [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 215
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F +P + PEA+ GI P
Sbjct: 23 DVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 83 TNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 143 FHPFATF-----DTAALSGLVLGQTVLAKACL-----AAGIP------------FDSSQA 180
Query: 175 HDAKADVYATLALVWLI 191
H A D TL L
Sbjct: 181 HSALYD---TLQTAKLF 194
>gi|71900855|ref|ZP_00682972.1| Exonuclease [Xylella fastidiosa Ann-1]
gi|71729379|gb|EAO31493.1| Exonuclease [Xylella fastidiosa Ann-1]
Length = 193
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAE 48
>gi|323464450|gb|ADX76603.1| DnaQ family exonuclease/DinG family helicase, putative
[Staphylococcus pseudintermedius ED99]
Length = 900
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 29/187 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D Q G+ R + I+ D +P FI +T +
Sbjct: 11 DLETTGNQADYDEIIQI-GITFVRNNQIIDHYHSMI--KTDLTIP----TFIQALTSIE- 62
Query: 69 LRDGVVEAEFSRRI-HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + +A + + + H+ +S CI +N+ FD + + F +
Sbjct: 63 -EEMLNQAPYFKEVAHKIYSKIKDCIFVAHNVNFDLNFLKRSFKKC------HIHYQPKK 115
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
D L++ + + P+ S++L +LA + GI AH A D Y T +
Sbjct: 116 VIDTLELFKIAF---------PTEK----SYQLTELAESLGIPLTQAHRADEDAYTTARI 162
Query: 188 VWLIREK 194
+ L EK
Sbjct: 163 MILAFEK 169
>gi|296824674|ref|XP_002850692.1| oligoribonuclease [Arthroderma otae CBS 113480]
gi|238838246|gb|EEQ27908.1| oligoribonuclease [Arthroderma otae CBS 113480]
Length = 188
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
++ V D E G D A D+ Q D Q +E
Sbjct: 7 SDPLVWVDCEMTGLDPANDKILQICCFITDAQLNLLE 43
>gi|108563906|ref|YP_628222.1| DNA polymerase III subunit epsilon [Helicobacter pylori HPAG1]
gi|107837679|gb|ABF85548.1| DNA polymerase III epsilon subunit [Helicobacter pylori HPAG1]
Length = 323
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 162
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 163 TYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 212
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 213 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 256
Query: 182 YATLAL 187
A+ L
Sbjct: 257 LASYKL 262
>gi|28198432|ref|NP_778746.1| oligoribonuclease [Xylella fastidiosa Temecula1]
gi|182681104|ref|YP_001829264.1| oligoribonuclease [Xylella fastidiosa M23]
gi|32129804|sp|Q87E07|ORN_XYLFT RecName: Full=Oligoribonuclease
gi|28056516|gb|AAO28395.1| oligoribonuclease [Xylella fastidiosa Temecula1]
gi|182631214|gb|ACB91990.1| Exonuclease RNase T and DNA polymerase III [Xylella fastidiosa
M23]
gi|307579552|gb|ADN63521.1| oligoribonuclease [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 193
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAE 48
>gi|115522405|ref|YP_779316.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
BisA53]
gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
BisA53]
Length = 229
Score = 40.9 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 30/194 (15%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D DR + V ++ + +++ C + EA + G++ +
Sbjct: 7 DTETTGLDPLRGDRLVEIGCV---EILNRMPTGQIYHCYINPERDMPAEAFAVHGLSAEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ AE + F + I +N FD + R
Sbjct: 64 LSTKPLF-AEVAEEFLAFIADAPLVI---HNASFDIGFINAELARLSQPPIPRDR----- 114
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL--ANGIEHVNAHDAKADVYATL 185
L+D + P S +L DL A H A D
Sbjct: 115 ---LVDTLLLARRKHP-----------GVSNRLDDLCSRYAIDNSRRTKHGALLDAELLA 160
Query: 186 AL-VWLIREKKPKL 198
+ V LI ++ +L
Sbjct: 161 EVYVDLIGARQSQL 174
>gi|294628378|ref|ZP_06706938.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
gi|292831711|gb|EFF90060.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
Length = 242
Score = 40.9 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G DV DR A V D V +P P EA + G+T +
Sbjct: 13 FDTETTGVDVETDRIVSAAVVVQDA---PGTRPRVSRWLVNPG-VPVPREATAVHGLTEE 68
Query: 67 KALRDGVVEAEFSRRIHQFFS 87
+ R G A I + +
Sbjct: 69 RLQRTGRWPAPVMYEIAEQLA 89
>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
Length = 1449
Score = 40.9 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FVI+D ET G + + + V++ + + + P P + IT
Sbjct: 420 EEFVIFDIETTGLNSHTNEIIEIGAVKIKS-----GRIVDRYSQLINPGRPIPYHITEIT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + + I +F ++ +N FD + + + Y+ S
Sbjct: 475 SITDEQVA----NEPKINEVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 531 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 571
Query: 182 YATLAL 187
AT +
Sbjct: 572 QATANM 577
>gi|126666943|ref|ZP_01737919.1| oligoribonuclease [Marinobacter sp. ELB17]
gi|126628659|gb|EAZ99280.1| oligoribonuclease [Marinobacter sp. ELB17]
Length = 180
Score = 40.9 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
N V D E G D +R + A + D + I
Sbjct: 5 NRLVWIDLEMTGLDPEQERIIEMATLITDSELNLIAE 41
>gi|258545959|ref|ZP_05706193.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
gi|258518837|gb|EEV87696.1| ribonuclease T [Cardiobacterium hominis ATCC 15826]
Length = 212
Score = 40.9 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 46/193 (23%), Positives = 65/193 (33%), Gaps = 42/193 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRV--DRQWEKIESTEVFF-CKPADDYLPDPEAVFITGITP 65
D ET G D D + A V V D + + + P DPEA+ ITGI P
Sbjct: 19 DVETGGFDAKKDALLELAAVLVNFDENQRLCRTHTIHYHIHPFPGANIDPEALKITGIDP 78
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPN-------TCIIGYNNIRFDDYYS-----RNIFYRN 113
LR E + + R + ++G+N FD + R + RN
Sbjct: 79 YHPLRPAYHEDKAAERFFDEIRAYQKQQECTRSILVGHNA-TFDLGFINALAERTDYKRN 137
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV- 172
+ + S D + + Y G T L +A G E+
Sbjct: 138 PFHPF--------SVLDTVSLGALAY--------------GQTV--LARIARQGGFEYDS 173
Query: 173 -NAHDAKADVYAT 184
AH AK D T
Sbjct: 174 SKAHGAKYDAELT 186
>gi|229113222|ref|ZP_04242717.1| exonuclease [Bacillus cereus Rock1-15]
gi|228670248|gb|EEL25596.1| exonuclease [Bacillus cereus Rock1-15]
Length = 288
Score = 40.9 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 38/194 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ FVI D ET G D+ + + + D + + KP +P EA I G
Sbjct: 129 DQFVILDTETTGL-TLRDQIIEISVI--DLAGKIL---LNSLVKPTI-IIPA-EATSIHG 180
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + G + +V T +I YN FD N N +
Sbjct: 181 ITNE--MIHGAQSWTTIYQELLEVTVGKTILI-YNA-EFDLGMIENTCIANNV-----EF 231
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQW-PSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ S + +YA D +W D + K H A AD
Sbjct: 232 KDFKS-----TCVMKMYADYVDSKKWISLSDATKLTIK---------------HRAAADC 271
Query: 182 YATLALVWLIREKK 195
+A L L+ ++ +
Sbjct: 272 FAVLELLQQLKNNQ 285
>gi|324999723|ref|ZP_08120835.1| oligoribonuclease [Pseudonocardia sp. P1]
Length = 213
Score = 40.9 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPAD-DYLPD 54
MT+ V D E G D+ D + A + D + V C A D +PD
Sbjct: 1 MTDRLVWIDCEMTGLDLGSDALIEIAALVTDGDLNVLGEGVDVVIACDDAQLDAMPD 57
>gi|290998255|ref|XP_002681696.1| predicted protein [Naegleria gruberi]
gi|284095321|gb|EFC48952.1| predicted protein [Naegleria gruberi]
Length = 185
Score = 40.9 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 1 MTNHFV-----IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
MT V D E G D+ D + A + D I + +D L
Sbjct: 1 MTTTLVQDPIVWVDMEMTGLDIDSDHILEIAVIITDGNLNIIAQLDSLIVHQSDSVL 57
>gi|269836971|ref|YP_003319199.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
20745]
gi|269786234|gb|ACZ38377.1| DNA polymerase III, epsilon subunit [Sphaerobacter thermophilus DSM
20745]
Length = 658
Score = 40.9 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 20/137 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
+ FV+ D ET G R + A +R + F + P P +
Sbjct: 84 LPTDFVVIDIETTGLRPLRQRIIEVAAIRYRG-----GRRQGVFSTLVNPERPVPAYIRK 138
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGI + G RR+ + + +IGYN + FD + R
Sbjct: 139 LTGI--DETALAGAPVF---RRVADELTAFLGDDLLIGYN-VEFDIAFLNAELKRLGRPP 192
Query: 118 YRWSWDNGNSRWDLLDV 134
N R DLL +
Sbjct: 193 LI------NPRLDLLPL 203
>gi|159036666|ref|YP_001535919.1| oligoribonuclease [Salinispora arenicola CNS-205]
gi|157915501|gb|ABV96928.1| Exonuclease RNase T and DNA polymerase III [Salinispora arenicola
CNS-205]
Length = 196
Score = 40.9 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D +
Sbjct: 1 MADLLVWIDCEMTGLDLGSDKLIEVAALVTDPDLNVLGE 39
>gi|307638212|gb|ADN80662.1| DNA polymerase III epsilon subunit [Helicobacter pylori 908]
gi|325996805|gb|ADZ52210.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2018]
gi|325998398|gb|ADZ50606.1| DNA polymerase III epsilon subunit [Helicobacter pylori 2017]
Length = 287
Score = 40.9 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQVRGG-EIINRFETLVKVKSVPDYI-----AELTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 127 TYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|291548714|emb|CBL24976.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Ruminococcus torques L2-14]
Length = 168
Score = 40.9 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 63/200 (31%), Gaps = 42/200 (21%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF----FCKPADDYLPDPEAVFIT 61
V +D E+ G D D Q I E + + + EA I
Sbjct: 3 VFFDIESTGLDPVRDEILQ---------LSIINENEEVLFSDYIRLVRHKTWN-EAEKIN 52
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY----RNFYDS 117
I+P+ E+ + I + F T +I YN FD + + + D
Sbjct: 53 HISPEMVKDKQTFESR-KQEIQKIFDQ-ATELIAYNA-NFDISFLKAVGIVLPDVPISDP 109
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
D + Y+ +W KL A G E AHD+
Sbjct: 110 MI----------D-FSFVYREYSEKYGIFKWQ---------KLVVAARYYGYEFD-AHDS 148
Query: 178 KADVYATLALVWLIREKKPK 197
D+ AT + ++EK K
Sbjct: 149 LEDIKATKFVYDKMKEKSQK 168
>gi|119187187|ref|XP_001244200.1| hypothetical protein CIMG_03641 [Coccidioides immitis RS]
Length = 137
Score = 40.9 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF 44
V D E G D D Q + D + E F
Sbjct: 10 LVWIDCEMTGLDPETDHILQISCFLTDADLNLL-EPEGFH 48
>gi|332638894|ref|ZP_08417757.1| helicase [Weissella cibaria KACC 11862]
Length = 940
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 59/180 (32%), Gaps = 29/180 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQK 67
D ET R Q A V + + I P + P + +TGIT +
Sbjct: 11 DLETTRTTSETGRIIQIAVAFV-QNKKIINQFSTL-VNPGEQI---PRNIIQLTGIT--Q 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ G E T + +N + FD + F R + + +
Sbjct: 64 NMVKGAPFFEDVAMTLHAMLQ-GTIFVAHN-VNFDLPFLNAEFERVGLTALKST------ 115
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
LD + I WP+ ++L D+ +EH + H A +D AT L
Sbjct: 116 ---ALDTVPL------SQILWPTA----PGYRLVDMTNCLSLEHNHPHQADSDALATGEL 162
>gi|319892447|ref|YP_004149322.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
pseudintermedius HKU10-03]
gi|317162143|gb|ADV05686.1| DinG family ATP-dependent helicase YoaA [Staphylococcus
pseudintermedius HKU10-03]
Length = 900
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 29/187 (15%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D Q G+ R + I+ D +P FI +T +
Sbjct: 11 DLETTGNQADYDEIIQI-GITFVRNNQIIDHYHSMI--KTDLTIP----TFIQALTSIE- 62
Query: 69 LRDGVVEAEFSRRI-HQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + +A + + + H+ +S CI +N+ FD + + F +
Sbjct: 63 -EEMLNQAPYFKEVAHKIYSKIKDCIFVAHNVNFDLNFLKRSFKKC------HIHYQPKK 115
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
D L++ + + P+ S++L +LA + GI AH A D Y T +
Sbjct: 116 VIDTLELFKIAF---------PTEK----SYQLTELAESLGIPLTQAHRADEDAYTTARI 162
Query: 188 VWLIREK 194
+ L EK
Sbjct: 163 MILAFEK 169
>gi|71274937|ref|ZP_00651225.1| Exonuclease [Xylella fastidiosa Dixon]
gi|71898826|ref|ZP_00680994.1| Exonuclease [Xylella fastidiosa Ann-1]
gi|170729792|ref|YP_001775225.1| oligoribonuclease [Xylella fastidiosa M12]
gi|71164669|gb|EAO14383.1| Exonuclease [Xylella fastidiosa Dixon]
gi|71731412|gb|EAO33475.1| Exonuclease [Xylella fastidiosa Ann-1]
gi|167964585|gb|ACA11595.1| oligoribonuclease [Xylella fastidiosa M12]
Length = 193
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAE 48
>gi|332974570|gb|EGK11490.1| oligoribonuclease [Kingella kingae ATCC 23330]
Length = 182
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
N+ D E G + D+ + A + D+ +
Sbjct: 5 NNLCWLDMEMTGLNPDTDKIIEIAMIITDKHLNVL 39
>gi|254823127|ref|ZP_05228128.1| oligoribonuclease [Mycobacterium intracellulare ATCC 13950]
Length = 215
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D +
Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGD 39
>gi|312875182|ref|ZP_07735195.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
2053A-b]
gi|311089289|gb|EFQ47720.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
2053A-b]
Length = 299
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 76/213 (35%), Gaps = 42/213 (19%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFI 60
T +VI D ET G D + + +++ + IE C + LP+ +
Sbjct: 128 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYS---CIVKQNITLPNAIKIL- 180
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + L++G E+ + + F ++GYN + FD + RN
Sbjct: 181 TGISDAE-LKNGKDESVAIKELCTFIGDK--ALVGYN-VNFDIRFINEALKRNGQSQLT- 235
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N +D++ Y ++KL + GI H A D
Sbjct: 236 -----NKVYDVMK-----YVKRDKMF--------LKNYKLDTVLSEYGINIKVPHRAIED 277
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
V +IR L L NK +++K
Sbjct: 278 V-------KIIRL----LISKLDGLTNKLKIQK 299
>gi|195439092|ref|XP_002067465.1| GK16173 [Drosophila willistoni]
gi|194163550|gb|EDW78451.1| GK16173 [Drosophila willistoni]
Length = 1126
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 368 VDRQIMDRILRTAPEQLSTLNLPFSD--RRLPELFFRYRARNFPHT-LSEKEKQDWLEHR 424
D+ + ++L L + L FSD +RL + T L KE ++W + +
Sbjct: 716 EDKAQLQQLLSETQRHLGDIKLKFSDTEQRLDK-----------ETQLRRKEAEEWQQFQ 764
Query: 425 KKMLTRSRIE-EYKNKL----QSLSGEYKGDEGKEGLINA 459
+L R+ ++K + + L E K + K L+
Sbjct: 765 SDLLMTVRVANDFKTEALSAREQLLLENKTQKEKIRLLEQ 804
>gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 230
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + + F+C P + + A+ + G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRKVTGNNLHFYCNPNYEV--EAGALAVHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+ + E + I F II +N FD +
Sbjct: 62 NEFLADKPLFEENVDQMI--DFLRGAEIII--HNAAFDVPFI 99
>gi|126661817|ref|ZP_01732816.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
gi|126625196|gb|EAZ95885.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
Length = 453
Score = 40.9 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 45/221 (20%), Positives = 73/221 (33%), Gaps = 31/221 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G + + A + D E ++ + P V +TGI
Sbjct: 2 YAIIDIETTGGQFNEEGITEIAIYKFDGH-EVVDQFISL---VNPEKPIQPFVVKLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
E ++RI + C+I +N FD + F R
Sbjct: 58 NAMLRSAPKF-YEVAKRIIEITEG---CVIVAHNASFDYRILKTEFRRLG---------- 103
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D S I S+ L L A GI + H A D AT
Sbjct: 104 ----YDFKKQTLCTVELSKKLIP------EQPSYSLGKLVRALGIPMADRHRANGDALAT 153
Query: 185 LALVW--LIREKKPKLFEYLYDYRNKNQLR-KLIDIQNMTP 222
+ L L+++ + ++ + K+ + KL+DI P
Sbjct: 154 VKLFKMLLVKDIEKEIVKSFIKTEIKSGISPKLLDIVESLP 194
>gi|330960097|gb|EGH60357.1| oligoribonuclease [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 178
Score = 40.9 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 34/176 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI-- 60
+ + D E G D D + A + D + + V +D+ L A
Sbjct: 5 QNLIWIDLEMTGLDPDTDVIIEMATIITDSELSTLAEGPVIAVHQSDETL----AKMDEW 60
Query: 61 -------TGITPQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYSR 107
+G+T Q+ + AE + +F + C N+I D R
Sbjct: 61 NTRQHGGSGLT-QRVRESTISMAEAEAQTLEFIKLWVPERSSPICG---NSICQD----R 112
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
YR+ ++ + + D+ + +SP+ G+T L D+
Sbjct: 113 RFLYRHM--PTLENYFHYRN-LDVSTLKELAARWSPEL----KFKKGSTHLALDDI 161
>gi|269219422|ref|ZP_06163276.1| exonuclease, DNA polymerase III, epsilon subunit family
[Actinomyces sp. oral taxon 848 str. F0332]
gi|269211118|gb|EEZ77458.1| exonuclease, DNA polymerase III, epsilon subunit family
[Actinomyces sp. oral taxon 848 str. F0332]
Length = 206
Score = 40.9 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR + V +D E + P AVF+ G+T
Sbjct: 7 DVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSL-VNPLRGM----GAVFVHGLT-DAD 60
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ D A+ +I FS +N FD + F R Y
Sbjct: 61 VADAPTLADLLPQIRGLFSGRALVA---HNATFDVGFLNASFARAGY 104
>gi|127512688|ref|YP_001093885.1| (NiFe) hydrogenase maturation protein HypF [Shewanella loihica
PV-4]
gi|126637983|gb|ABO23626.1| (NiFe) hydrogenase maturation protein HypF [Shewanella loihica
PV-4]
Length = 781
Score = 40.9 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 14/175 (8%)
Query: 243 VAWHPRYKDSV-IGCN----LSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHL 297
+A + K+S+ G + LS + L++ Q + L P K +
Sbjct: 416 LAVGAQQKNSIAFGFDHNLVLSPHIGDLFSLEAEQYFIDTLATFKRLYQFSP---KHLVS 472
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
+K P + +++ + GI + + + + + R + + + +
Sbjct: 473 DKHPDYASTIWAQQQKDAQ-GIAYTQVQHHYAHILSVMAVNQRVDKVLGFSFDGTGLGDE 531
Query: 358 SQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRR--LPELFFRYRARNFPH 410
QL+ G D R+ +P L D R + L F AR P
Sbjct: 532 RQLWGGEAMLADISGFKRVAHLSPMALIGGEQAIKDPRRIMLALLF---ARYSPD 583
>gi|281201272|gb|EFA75484.1| RNA exonuclease 2 [Polysphondylium pallidum PN500]
Length = 451
Score = 40.9 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
N + D E G D+ D + A + D + +E
Sbjct: 272 ANRLIWVDLEMTGLDITKDHIMEMACIITDSELNVVE 308
>gi|262044634|ref|ZP_06017689.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259038035|gb|EEW39251.1| ribonuclease T [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 215
Score = 40.9 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 58/205 (28%), Gaps = 38/205 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + + T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEHGWLMP-DETLHFHVEPFEGANLQPEALAFNGIN 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P V E + I + + I+ +N FD ++ R RN
Sbjct: 82 PHDPQLGAVSEYDALHAIFKMVRKGMKESDCSRAIMVAHNATFDHSFTMTAAERAGLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACIAAGMPFDG-----------------AQ 179
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D T L I + +L
Sbjct: 180 AHSALYDTEQTAQLFCEIVNRWKRL 204
>gi|255010437|ref|ZP_05282563.1| putative DNA polymerase III epsilon chain [Bacteroides fragilis
3_1_12]
gi|313148241|ref|ZP_07810434.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
gi|313137008|gb|EFR54368.1| DNA Pol III epsilon chain [Bacteroides fragilis 3_1_12]
Length = 257
Score = 40.9 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVF 59
+ N V +D ET G ++ DR + ++V + T + + +P P E+
Sbjct: 5 LKNPIVFFDLETTGTNINSDRIVEICYLKVYPNGNEESKTL----RINPE-MPIPAESSA 59
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ GI + D E ++ I + G+N+ RFD F R D
Sbjct: 60 VHGIF-DADVADCPTFKEVAKSIANDI--EGCDLAGFNSNRFDIPVLAEEFLRAGVD 113
>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
Length = 230
Score = 40.9 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 36/197 (18%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
D ET G D DR + V + ++ + + F C + +P EA + G++ +
Sbjct: 7 DTETTGLDPVRGDRLVELGCV---EIFNRMPTGQTFHCYINPERDMPQ-EAFAVHGLSSE 62
Query: 67 KALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ F++ + + F II +N FD + R
Sbjct: 63 FLADKPL----FAQVVDEFLEFIGDAPLII--HNASFDISFINAELERLKRQVIGRER-- 114
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL--ANGIEHVNAHDAKADVY 182
L+D + P S +L DL A H A D
Sbjct: 115 ------LVDTLLIARRKHP-----------GVSNRLDDLCSRYAIDNSRRTKHGALLDAE 157
Query: 183 ATLAL-VWLIREKKPKL 198
+ + LI ++ +L
Sbjct: 158 LLAEVYIDLIGARQSQL 174
>gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
DMIN]
gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
DMIN]
Length = 1405
Score = 40.9 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 46/201 (22%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-------------DDY 51
++I+D ET G + + P I K + DY
Sbjct: 2 YIIFDTETTGLPLDFNTPI----------INIINLPLPRLVKLSWVLLDEKLQLIELKDY 51
Query: 52 LPDPE-------AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDY 104
+ PE + I GI+ + A+ G+ F + +IG+N + FD
Sbjct: 52 IIKPEGYEIPFNSTKIHGISTKYAIEKGIK-INFVLEEFNLIIKKSNFLIGHN-VFFDIK 109
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFS-PDGIQWPSRDDGATSFKLQDL 163
F R + D ++ A + ++WP+ L +L
Sbjct: 110 IVCAEFIRIHKKISFFKKK----IIDTKEISINYCAIKMGEKLKWPT---------LTEL 156
Query: 164 ALANGIEHVNAHDAKADVYAT 184
+ AHD+K+DV AT
Sbjct: 157 YKKLFNDTFIAHDSKSDVLAT 177
>gi|239917482|ref|YP_002957040.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
2665]
gi|281414027|ref|ZP_06245769.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
2665]
gi|239838689|gb|ACS30486.1| oligoribonuclease (3'->5' exoribonuclease) [Micrococcus luteus NCTC
2665]
Length = 208
Score = 40.9 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 23/120 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF----- 59
V D E G +D + A + D + ++ + P A
Sbjct: 14 LVWIDCEMTGLHPQVDELVEVAVLITDAELNILDEGIDLVIR------PSAAAFEQMDPF 67
Query: 60 ------ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGY---NNIRFDDYYS-RNI 109
+G+ P+ L +G+ + + R+ ++ + G N + D + R +
Sbjct: 68 VRDMHTTSGLLPE--LAEGLELDDAAARVLEYIAARVPAGKGLLAGNTVGQDKLFLARYM 125
>gi|168207510|ref|ZP_02633515.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens E str. JGS1987]
gi|170661145|gb|EDT13828.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens E str. JGS1987]
Length = 204
Score = 40.9 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 33/195 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFIT 61
+ +D ET G Q + + VD + I +FF D + +PEA I
Sbjct: 3 LLFFDTETTGVKPG--SICQLSYILVDTSTKPQKTIGK-NIFF---TVDEM-EPEAERIH 55
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
G + +K + E + ++ F IIG+N ++FD + ++ +
Sbjct: 56 GFSLEKLYE--LSEGMYFEDLYANFINDFLEADFIIGHN-VQFDIKFLKHELL--GLGEF 110
Query: 119 RWSWDNGNS---RWDLLDVMRAIYAFSPDG-IQWPSRDDGATSFKLQD--LAL-ANGI-- 169
+ + D+ P G + P ++ + D ++ AN
Sbjct: 111 FEPNNVFCTMKYYKDI------CKILRPTGDYKNPKLEEVIKHLNITDSEISKTANKYFQ 164
Query: 170 EHVNAHDAKADVYAT 184
N HDA+ D AT
Sbjct: 165 GSGNYHDARFDTAAT 179
>gi|148244280|ref|YP_001218974.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
gi|146326107|dbj|BAF61250.1| oligoribonuclease [Candidatus Vesicomyosocius okutanii HA]
Length = 181
Score = 40.9 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
+ + D E G D + A + D Q I
Sbjct: 6 TNLIWIDLEMTGLTPEKDVIIEIATIVTDAQLHII 40
>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
Length = 305
Score = 40.9 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 68 DTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 124
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE + +I F I +N FD + F R +
Sbjct: 125 LSDKPKF-AEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFT 172
>gi|307110015|gb|EFN58252.1| hypothetical protein CHLNCDRAFT_12089 [Chlorella variabilis]
Length = 171
Score = 40.9 bits (95), Expect = 0.47, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + D E G DV D+ Q A + D E++
Sbjct: 4 MKQPLIWIDLEMTGLDVESDQILQIAVICTDGAMEEVVE 42
>gi|254229568|ref|ZP_04922981.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
gi|151937941|gb|EDN56786.1| DNA polymerase III, alpha subunit [Vibrio sp. Ex25]
Length = 226
Score = 40.9 bits (95), Expect = 0.47, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 62/207 (29%), Gaps = 33/207 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T + +I D ET G A +F + + ++ C D A I
Sbjct: 27 TENAIIIDTETTGLG-ADAEIVEFTAICANSGEVIVDELVKPTCSIPAD------ATAIH 79
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + FS R + I YN+ FD ++ +Y
Sbjct: 80 GITNEDVKDAPDFHLMFSNRFLPLLNGRPIII--YNS-DFDTRLIIQSLDKHCNAAYVQ- 135
Query: 122 WDNGNSRWDLLDVMRA--IYAFSPDGI--QW-PSRDDGATSFKLQDLALANGIEHVN--- 173
S DL W +D +K Q L A +HV+
Sbjct: 136 -----SVHDLFFKFCVPQCAMLWYAEFYGVWNEYHED----YKWQSLTNACAQQHVDVSD 186
Query: 174 --AHDAKADVYATLALVWLIREKKPKL 198
AH A AD T LI K+
Sbjct: 187 LIAHRALADCEMT---RRLIHAVNSKI 210
>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
Length = 244
Score = 40.9 bits (95), Expect = 0.48, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 8/111 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARAGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
AE + +I F II +N FD + F +
Sbjct: 64 LSDKPKF-AEVADQIR-EFVRGAELII--HNAPFDLGFLDAEFALLGLPPF 110
>gi|297559294|ref|YP_003678268.1| exonuclease RNase T and DNA polymerase III [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296843742|gb|ADH65762.1| Exonuclease RNase T and DNA polymerase III [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 243
Score = 40.9 bits (95), Expect = 0.49, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D E+ G D+A DR A R+D + + P D +P EA I IT +
Sbjct: 21 FDTESTGLDLANDRIVTAALWRIDPAART-KEVTTWLIDPGID-IPQ-EATDIHHITTEH 77
Query: 68 ALRDGVVEAEFSRRIHQFFSV 88
A G AE I
Sbjct: 78 AREHGRPAAEAVPEIGAALEK 98
>gi|269219723|ref|ZP_06163577.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
gi|269210965|gb|EEZ77305.1| oligoribonuclease [Actinomyces sp. oral taxon 848 str. F0332]
Length = 214
Score = 40.9 bits (95), Expect = 0.49, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD 49
M N V D E G D+ +D + A V D + ++ +P+D
Sbjct: 1 MNNPIVWIDCEMTGLDLNVDELVEVAVVITDSELNPVDEGIDVLIRPSD 49
>gi|224283886|ref|ZP_03647208.1| DNA polymerase III alpha subunit [Bifidobacterium bifidum NCIMB
41171]
gi|311064734|ref|YP_003971459.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
gi|313141038|ref|ZP_07803231.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
41171]
gi|310867053|gb|ADP36422.1| DnaQ DNA polymerase III alpha subunit [Bifidobacterium bifidum
PRL2010]
gi|313133548|gb|EFR51165.1| DNA polymerase III subunit epsilon [Bifidobacterium bifidum NCIMB
41171]
Length = 180
Score = 40.9 bits (95), Expect = 0.49, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 30/199 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ + +V+ D ET G D +F V+V + +++ + + +P +
Sbjct: 7 LPDDYVVLDLETTGVSWYRDTIIEFGAVKV-VDRKPVDTYQQLVNPMRN---LNPFITQL 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGITP A + F + +IG+N ++FD + R + +
Sbjct: 63 TGITPDMLE-----PAPTLDTVLPDFLRWCGDDAMIGHNIMQFDIKFIDLAAQRILHHAV 117
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D ++ + P +L DL I V H A
Sbjct: 118 P------NR---IIDTLQMSRSMYPQ-----YNRH-----RLVDLIQRFDIADVEEHRAL 158
Query: 179 ADVYATLALVWLIREKKPK 197
+D T +R+++ +
Sbjct: 159 SDAEQTQMCFEYMRDEQRR 177
>gi|217033856|ref|ZP_03439281.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
gi|216943754|gb|EEC23197.1| hypothetical protein HP9810_877g60 [Helicobacter pylori 98-10]
Length = 287
Score = 40.9 bits (95), Expect = 0.49, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 127 TYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|15837858|ref|NP_298546.1| oligoribonuclease [Xylella fastidiosa 9a5c]
gi|11133792|sp|Q9PDX2|ORN_XYLFA RecName: Full=Oligoribonuclease
gi|9106239|gb|AAF84066.1|AE003959_8 oligoribonuclease [Xylella fastidiosa 9a5c]
Length = 193
Score = 40.9 bits (95), Expect = 0.49, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 14 LIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAE 48
>gi|51596620|ref|YP_070811.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
gi|81825791|sp|Q66A36|RNT_YERPS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|51589902|emb|CAH21534.1| ribonuclease T [Yersinia pseudotuberculosis IP 32953]
Length = 215
Score = 40.9 bits (95), Expect = 0.50, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F +P + PEA+ GI P
Sbjct: 23 DVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 83 TNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 143 FHPFATF-----DTAALSGLVLGQTVLAKACL-----AAGIP------------FDSSQA 180
Query: 175 HDAKADVYATLALVWLI 191
H A D TL L
Sbjct: 181 HSALYD---TLQTAKLF 194
>gi|49474836|ref|YP_032877.1| DNA polymerase III epsilon chain [Bartonella henselae str.
Houston-1]
gi|49237641|emb|CAF26821.1| DNA polymerase III epsilon chain [Bartonella henselae str.
Houston-1]
Length = 235
Score = 40.9 bits (95), Expect = 0.50, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 59/180 (32%), Gaps = 29/180 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I+D ET G D DR + V VDR + P +PD E V + G+T
Sbjct: 4 IIFDTETTGLDKEKDRIIEIGCVEMVDRYLT--GRRFHVYLNPQGVIIPD-EVVAVHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
++ E FS +F N + +N FD + R
Sbjct: 61 NERLK----NEKSFSDIADEFLEFINGATMIAHNASFDIGFLNAELARANKPLI------ 110
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVY 182
S ++LD A ++P + L L GI H H A D
Sbjct: 111 --SVDNILDT--LAMARR----KFPMAPNS-----LDVLCKRFGIDNSHRVFHGALLDAE 157
>gi|312870744|ref|ZP_07730851.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
3008A-a]
gi|312873738|ref|ZP_07733783.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
2052A-d]
gi|329919615|ref|ZP_08276604.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
1401G]
gi|311090736|gb|EFQ49135.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
2052A-d]
gi|311093756|gb|EFQ52093.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners LEAF
3008A-a]
gi|328937420|gb|EGG33842.1| CRISPR-associated endoribonuclease Cas2 [Lactobacillus iners SPIN
1401G]
Length = 299
Score = 40.9 bits (95), Expect = 0.50, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 75/213 (35%), Gaps = 42/213 (19%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFI 60
T +VI D ET G D + + +++ + IE C + LP+ +
Sbjct: 128 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYS---CIVKQNITLPNAIKIL- 180
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + L+ G E+ + + F ++GYN + FD + RN
Sbjct: 181 TGISDAE-LKTGKDESVAIKELCTFIGDK--ALVGYN-VNFDIRFINEALKRNGQSQLT- 235
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N +D++ Y ++KL + GI H A D
Sbjct: 236 -----NKVYDVMK-----YVKRDKMF--------LKNYKLDTVLSEYGINIKVPHRAIED 277
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNKNQLRK 213
V +IR L L NK +++K
Sbjct: 278 V-------KIIRL----LISKLDGLTNKLKIQK 299
>gi|254391300|ref|ZP_05006504.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|326440213|ref|ZP_08214947.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|197704991|gb|EDY50803.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
Length = 241
Score = 40.9 bits (95), Expect = 0.50, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A V D + P A + G+T
Sbjct: 12 FDTETTGVDVENDRIVAAAVVVQDMAG---GRPRITRWLINPGIPVPPGATEVHGLTDDH 68
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIG----YNNIRFDDYYSRNIFYRNFYDSYRW 120
R+G A + + + C G N FD R+
Sbjct: 69 VQRNGRWPAPVLEEVAKTVA--GHCAAGRPLVVMNAPFDLTILDRELRRHRATPLSR 123
>gi|153949552|ref|YP_001400734.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
gi|166991091|sp|A7FHK6|RNT_YERP3 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|152961047|gb|ABS48508.1| ribonuclease T [Yersinia pseudotuberculosis IP 31758]
Length = 215
Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F +P + PEA+ GI P
Sbjct: 23 DVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 83 TNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 142
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 143 FHPFATF-----DTAALSGLVLGQTVLAKACL-----AAGIP------------FDSSQA 180
Query: 175 HDAKADVYATLALVWLI 191
H A D TL L
Sbjct: 181 HSALYD---TLQTAKLF 194
>gi|15612503|ref|NP_224156.1| DNA polymerase III subunit epsilon [Helicobacter pylori J99]
gi|4156060|gb|AAD07016.1| DNA POLYMERASE III [Helicobacter pylori J99]
Length = 323
Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 109 FSFVDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 162
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + L E + + F N+ + +N FD + F +
Sbjct: 163 TYEDTLNAPSAH-EALQELRIFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 212
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 213 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 256
Query: 182 YATLAL 187
A+ L
Sbjct: 257 LASYKL 262
>gi|108807723|ref|YP_651639.1| ribonuclease T [Yersinia pestis Antiqua]
gi|108811999|ref|YP_647766.1| ribonuclease T [Yersinia pestis Nepal516]
gi|162420848|ref|YP_001606979.1| ribonuclease T [Yersinia pestis Angola]
gi|165926445|ref|ZP_02222277.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
gi|165938652|ref|ZP_02227208.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
gi|166010664|ref|ZP_02231562.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211013|ref|ZP_02237048.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
gi|167400761|ref|ZP_02306267.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167422151|ref|ZP_02313904.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167424940|ref|ZP_02316693.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|270490511|ref|ZP_06207585.1| ribonuclease T [Yersinia pestis KIM D27]
gi|294503612|ref|YP_003567674.1| ribonuclease T [Yersinia pestis Z176003]
gi|108775647|gb|ABG18166.1| RNAse T [Yersinia pestis Nepal516]
gi|108779636|gb|ABG13694.1| RNAse T [Yersinia pestis Antiqua]
gi|162353663|gb|ABX87611.1| ribonuclease T [Yersinia pestis Angola]
gi|165913526|gb|EDR32147.1| ribonuclease T [Yersinia pestis biovar Orientalis str. IP275]
gi|165921666|gb|EDR38863.1| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016]
gi|165990366|gb|EDR42667.1| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001]
gi|166208193|gb|EDR52673.1| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004]
gi|166958963|gb|EDR55984.1| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167049614|gb|EDR61022.1| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167056127|gb|EDR65905.1| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|262361655|gb|ACY58376.1| ribonuclease T [Yersinia pestis D106004]
gi|262365605|gb|ACY62162.1| ribonuclease T [Yersinia pestis D182038]
gi|270339015|gb|EFA49792.1| ribonuclease T [Yersinia pestis KIM D27]
gi|294354071|gb|ADE64412.1| ribonuclease T [Yersinia pestis Z176003]
Length = 226
Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F +P + PEA+ GI P
Sbjct: 34 DVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACL-----AAGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D TL L
Sbjct: 192 HSALYD---TLQTAKLF 205
>gi|311694884|gb|ADP97757.1| exonuclease RNase T and DNA polymerase III [marine bacterium HP15]
Length = 190
Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 65/215 (30%), Gaps = 61/215 (28%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC----------KPADDYL 52
++ VI D ET G D +I V C +P+ +
Sbjct: 17 DNAVIIDTETTGL--------------TDTD--EIVEISVINCHGTTLLDTLIRPSSEI- 59
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIF 110
+P A + GIT L + F + + T ++ YN+ ++
Sbjct: 60 -NPAAQAVHGIT----LAETADAPTFDQVLPDLLRVIQGKTVVM-YNSSYDARLIQQSAM 113
Query: 111 YRNFYDSYRW------SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R + ++ +WD + +W S L A
Sbjct: 114 KRGCRAPTLYPHCAMKTYAKFYGQWD----------DYRESWKWQS---------LDKAA 154
Query: 165 LANGI-EHVNAHDAKADVYATLALVWLIREKKPKL 198
G+ NAH A D + TL ++ + P +
Sbjct: 155 RQCGVTVDGNAHRALTDCFTTLGVIKAMAAYNPAV 189
>gi|297199883|ref|ZP_06917280.1| oligoribonuclease [Streptomyces sviceus ATCC 29083]
gi|197710348|gb|EDY54382.1| oligoribonuclease [Streptomyces sviceus ATCC 29083]
Length = 200
Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G ++ D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDQAL 52
>gi|266706193|gb|ACY78400.1| OrnA [Streptomyces chattanoogensis]
Length = 206
Score = 40.6 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 7/109 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAV- 58
M + V D E G +A D + A + D + + +P + L PE V
Sbjct: 1 MNDRMVWIDCEMTGLSLANDALIEVAALVTDSELNVLGDGVDVVIRPPAEALTTMPEVVR 60
Query: 59 -FITGITPQKALRDGVV----EAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
T L G EA+ I Q P + N++ D
Sbjct: 61 AMHTASGLLDELDRGTTLEDAEAQVLAYIRQHVPEPGKAPLCGNSVGTD 109
>gi|119491524|ref|XP_001263283.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
gi|119411443|gb|EAW21386.1| RNA exonuclease Rex2, putative [Neosartorya fischeri NRRL 181]
Length = 188
Score = 40.6 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
T+ V D E G + D Q D ++
Sbjct: 7 TDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLD 43
>gi|70999440|ref|XP_754439.1| RNA exonuclease Rex2 [Aspergillus fumigatus Af293]
gi|66852076|gb|EAL92401.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus Af293]
gi|159127455|gb|EDP52570.1| RNA exonuclease Rex2, putative [Aspergillus fumigatus A1163]
Length = 250
Score = 40.6 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
T+ V D E G + D Q D ++
Sbjct: 67 TDPLVWIDCEMTGLNPETDTILQICCYITDANLNLLD 103
>gi|228934882|ref|ZP_04097713.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228824782|gb|EEM70583.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 315
Score = 40.6 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + A + KL+ L GI + H+A
Sbjct: 114 --EPQNK-----VIDTVFLA----------KKYMKHAPNHKLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|285018424|ref|YP_003376135.1| oligoribonuclease [Xanthomonas albilineans GPE PC73]
gi|283473642|emb|CBA16145.1| probable oligoribonuclease protein [Xanthomonas albilineans]
Length = 190
Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + D E G D D + A V D Q +
Sbjct: 8 NDRLIWIDLEMTGLDTERDSIIEIATVVTDAQLNVLAE 45
>gi|300773503|ref|ZP_07083372.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33861]
gi|300759674|gb|EFK56501.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33861]
Length = 469
Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 42/212 (19%), Positives = 67/212 (31%), Gaps = 31/212 (14%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFI 60
+ + I D ET G A + A D + I+S + +P +
Sbjct: 10 SRIYAIVDIETTGGYAANSGITEIAIYLHDGH-QIIDSYQTL---INPHKEIPY-HIQML 64
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGITP+ E + + I+ F N + +N + FD F + +
Sbjct: 65 TGITPEMLTDAPSFE-DVAADIYSFL--ENKVFVAHN-VNFD-----YSFVYAHLKACGY 115
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
W + +R G +S+ L +L I + H A D
Sbjct: 116 QWKSPKLC-----TVRLARNIF----------KGFSSYSLGNLCQRLDIPISDRHRAAGD 160
Query: 181 VYATLALVWLIREKKPK-LFEYLYDYRNKNQL 211
AT+ L I L + K QL
Sbjct: 161 AKATVILFERILSHDTNGLIDSFLQTHAKEQL 192
>gi|218457859|ref|YP_002418864.1| putative DEDDH exonuclease [Pseudomonas phage SN]
gi|218379127|emb|CAT99715.1| putative DEDDH exonuclease [Pseudomonas phage SN]
Length = 184
Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 5 FVIYDYETFGRDVALD--------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
F ++D ET G R +FAGV D + + ++ E F C + +
Sbjct: 3 FAVWDTETTGL-PFHQRVSLRKQPRIIEFAGVITDGE-KILDEVE-FIC--NPGIVIEE- 56
Query: 57 AVFITGITPQKALRDGVVEAEFSRR---IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
IT IT D V F + + FFS + I +N+ FD + R
Sbjct: 57 --IITKIT-GLKNEDLVKHPSFLDQRHKVRDFFSRADANIA--HNLPFDKFMLTCDLARG 111
>gi|171463544|ref|YP_001797657.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 236
Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGV------RVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
VI D ET G + A DR + + DR + ++ P D D A
Sbjct: 4 VILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFH-------YYINPERDI--DAGAF 54
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ G++ + + F+ + Q + I +N FD + N F +
Sbjct: 55 AVHGLSREFLSDKPI----FANIVEQLIEFVDGAEILIHNAAFDLGFLDNEFALLKRPPF 110
>gi|49478968|ref|YP_037688.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|301055098|ref|YP_003793309.1| DNA polymerase III subunit epsilon [Bacillus anthracis CI]
gi|49330524|gb|AAT61170.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|300377267|gb|ADK06171.1| DNA polymerase III subunit epsilon [Bacillus cereus biovar
anthracis str. CI]
Length = 315
Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + A + KL+ L GI + H+A
Sbjct: 114 --EPQNK-----VIDTVFLA----------KKYMKHAPNHKLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|330684981|gb|EGG96656.1| exonuclease DnaQ family/helicase DinG family [Staphylococcus
epidermidis VCU121]
Length = 902
Score = 40.6 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 29/192 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ + D ET G + D Q G+ RQ + I + + D P +A+
Sbjct: 5 TYAVVDLETTGNQLDYDDIIQI-GITFVRQNKIIGTYHSMI-RTDLDIPPFIQAL----T 58
Query: 64 TPQKALRDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ ++ + + E ++ I+Q C+ +N+ FD + + F + ++
Sbjct: 59 SIEETMLEQAPYFKEIAQDIYQQLQD---CVFVAHNVAFDLNFIKKAFKNC---NIKY-- 110
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L++ + + P+ S++L +LA A+ I NAH A D
Sbjct: 111 -RPKRVMDTLELFKIAF---------PTDK----SYQLSELAEAHDIPLNNAHRADEDAT 156
Query: 183 ATLALVWLIREK 194
T L+ EK
Sbjct: 157 TTAHLMIKAFEK 168
>gi|302865700|ref|YP_003834337.1| exonuclease RNase T and DNA polymerase III [Micromonospora
aurantiaca ATCC 27029]
gi|302568559|gb|ADL44761.1| Exonuclease RNase T and DNA polymerase III [Micromonospora
aurantiaca ATCC 27029]
Length = 196
Score = 40.6 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D + A + D +
Sbjct: 1 MADLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGD 39
>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 3_1_27]
gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 3_1_27]
Length = 1449
Score = 40.6 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 420 EEFVVFDIETTGLNSHTNEIIEIGAVKIKA-----GRIVDRYSQLINPGRPIPYHITEIT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + + I +F ++ +N FD + + + Y+ S
Sbjct: 475 SITNEQVA----NEPKIDKVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 531 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 571
Query: 182 YATLAL 187
AT +
Sbjct: 572 QATANM 577
>gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1]
gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1]
Length = 588
Score = 40.6 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 52/190 (27%), Gaps = 35/190 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV+ D ET G D + V++ E I P V ITG
Sbjct: 22 TTFVVVDLETTGARPGEDAITEIGAVKIRGG-EVIAEMATL---VDPGRSIPPHIVEITG 77
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + RI + + ++R + +
Sbjct: 78 ITTAMVID--------APRIERVL----PAFL---------EFARGAVLVAHNAPFDTGF 116
Query: 123 DNGNSR-----WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ W V+ + D A S KL LA + H A
Sbjct: 117 LKAAASATDTPWPKFTVLCTVKLARR-----VLSRDEAPSVKLSSLARLFDVGTTPTHRA 171
Query: 178 KADVYATLAL 187
D AT+ +
Sbjct: 172 LDDARATVDV 181
>gi|297242761|ref|ZP_06926699.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
gi|296888972|gb|EFH27706.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis AMD]
Length = 261
Score = 40.6 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 25/191 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G ++ D V + + + +P+A + G T +
Sbjct: 34 FDTETTGANIGKDAIVSATLVLRNPELAHAGDVVSTW-LINPHQPMNPKASEVNGFTDEY 92
Query: 68 ALRDG---VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
G E EF R N ++ YN FD R+ R +
Sbjct: 93 LQEHGGEPEEELEFLARAVSIAQAKNIPLLAYNA-PFDIAMLRHDLKRWHLTALE----- 146
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQW--PSRDDGATSFK-----LQDLALANGIE-HVNAHD 176
+I+A + + I P D A S + L + G+E + HD
Sbjct: 147 -------ERATCSIHALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVEPIGDFHD 199
Query: 177 AKADVYATLAL 187
A AD A L L
Sbjct: 200 ATADTVAALDL 210
>gi|269139030|ref|YP_003295731.1| ribonuclease T [Edwardsiella tarda EIB202]
gi|267984691|gb|ACY84520.1| ribonuclease T [Edwardsiella tarda EIB202]
gi|304558963|gb|ADM41627.1| Ribonuclease T [Edwardsiella tarda FL6-60]
Length = 254
Score = 40.6 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G D + + A V + D W + + F P + + PEA+ GI P
Sbjct: 56 DVETAGFDANRNALLEIAAVTLRMNDDGWLETDQCLHFHITPFEGAVLSPEALAFNGIDP 115
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E I + N ++ +N FD + R RN
Sbjct: 116 HNPLRGAVSEYTALHAIFKMVRKGIKDQACNRAVVVAHNAHFDHSFLMAAAERAGLKRNP 175
Query: 115 YDSYRW 120
+ +
Sbjct: 176 FHPFAT 181
>gi|88855197|ref|ZP_01129862.1| oligoribonuclease [marine actinobacterium PHSC20C1]
gi|88815725|gb|EAR25582.1| oligoribonuclease [marine actinobacterium PHSC20C1]
Length = 206
Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 1 MTNH---FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
M +H V D E G DV +D + A V D ++ KP+ D L
Sbjct: 1 MASHADYLVWIDCEMTGLDVEIDELVEVAVVITDYDLVPVDEGMSIVIKPSADALEH 57
>gi|315502266|ref|YP_004081153.1| exonuclease rnase t and DNA polymerase iii [Micromonospora sp.
L5]
gi|315408885|gb|ADU07002.1| Exonuclease RNase T and DNA polymerase III [Micromonospora sp.
L5]
Length = 196
Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D + A + D +
Sbjct: 1 MADLLVWIDCEMTGLDLRRDALIEVAALVTDPDLNVLGD 39
>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
Length = 1449
Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 420 EEFVVFDIETTGLNSHTNEIIEIGAVKIKA-----GRIVDRYSQLINPGRPIPYHITEIT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + + I +F ++ +N FD + + + Y+ S
Sbjct: 475 SITDEQVA----NEPKINEVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYKCS 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 531 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 571
Query: 182 YATLAL 187
AT +
Sbjct: 572 QATANM 577
>gi|303317210|ref|XP_003068607.1| exonuclease family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240108288|gb|EER26462.1| exonuclease family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320038531|gb|EFW20466.1| RNA exonuclease Rex2 [Coccidioides posadasii str. Silveira]
Length = 190
Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF 44
V D E G D D Q + D + E F
Sbjct: 10 LVWIDCEMTGLDPETDHILQISCFLTDADLNLL-EPEGFH 48
>gi|326562712|gb|EGE13014.1| ribonuclease T [Moraxella catarrhalis 103P14B1]
gi|326568721|gb|EGE18791.1| ribonuclease T [Moraxella catarrhalis BC8]
gi|326574186|gb|EGE24134.1| ribonuclease T [Moraxella catarrhalis 101P30B1]
gi|326575625|gb|EGE25549.1| ribonuclease T [Moraxella catarrhalis O35E]
Length = 232
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 60/191 (31%), Gaps = 29/191 (15%)
Query: 9 DYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + A D + A + +D +P D +P A+ TGI P
Sbjct: 25 DVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTGINP 84
Query: 66 QKALRDGVVEAE--FSRRIHQFF-------SVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
R + E E RRI + S ++G+N FD + R
Sbjct: 85 DSPFRKAISEDEKTALRRIFKALKALKKEHSCRQCILVGHNA-HFDLGFLNAAIARTNSK 143
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ S + S D + Y G T + ++ +AH
Sbjct: 144 N--HSPFHTFSVLDTVSFAALTY--------------GHTVLAKTCMIAGLEFDNQHAHS 187
Query: 177 AKADVYATLAL 187
A D T L
Sbjct: 188 ALYDAQKTAEL 198
>gi|328541691|ref|YP_004301800.1| DNA polymerase III, epsilon subunit [polymorphum gilvum
SL003B-26A1]
gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
SL003B-26A1]
Length = 240
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 8 YDYETFGRDVAL-DRPAQFAGVRVDRQWEKI--ESTEVFFCKPADDYLPDPEAVF-ITGI 63
+D ET G D DR + GV + + + +T + P D PEA F + G+
Sbjct: 6 FDTETTGLDPRNGDRLVEIGGVEL---FNHVPTGNTYHVYINPERDM---PEAAFNVHGL 59
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + V F+ + +F + + +N FD + R +
Sbjct: 60 SAEFLADKPV----FAEIVDEFLAFVGDARLVIHNAAFDMGFINMELSRAGRLPIPRTQ- 114
Query: 124 NGNSRWDLLDVMRAIYAFSPDGI 146
D L++ R + P+ +
Sbjct: 115 ----VLDTLELARRKHPMGPNSL 133
>gi|120603536|ref|YP_967936.1| exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris
DP4]
gi|120563765|gb|ABM29509.1| Exonuclease, RNase T and DNA polymerase III [Desulfovibrio vulgaris
DP4]
Length = 251
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
FV+ D E G D AGV + + +I + F K P+ +A+ +
Sbjct: 45 AATFVVLDLEMTGLVPRRDAIIAVAGVTMRGE--RILAGRCFEAKMRPHLPPEEDAIAVH 102
Query: 62 GITPQKALRD 71
G+ P +
Sbjct: 103 GLLPDETATH 112
>gi|311740580|ref|ZP_07714407.1| DNA polymerase III subunit epsilon [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311304100|gb|EFQ80176.1| DNA polymerase III subunit epsilon [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 223
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDY-LPDPEAVFITGITP 65
+D ET + R A VR+D R +K+E +P EA + GIT
Sbjct: 11 FDLETTSANPKEARIVTSALVRIDGRDVQKVEHLA------DPGIEIPQ-EATNVHGITT 63
Query: 66 QKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+KA +G E I + T I+ YN FD R++
Sbjct: 64 EKARAEGRPHEEVLKDTIEAIKAAWEDGLTLIV-YNA-AFDLTVLRSL 109
>gi|300780594|ref|ZP_07090449.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
gi|300533580|gb|EFK54640.1| oligoribonuclease [Corynebacterium genitalium ATCC 33030]
Length = 217
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
V D E G D + A + D + ++
Sbjct: 19 IVWIDLEMTGLDPQRHVIVEVAALVTDAELNILD 52
>gi|186895675|ref|YP_001872787.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
gi|186698701|gb|ACC89330.1| ribonuclease T [Yersinia pseudotuberculosis PB1/+]
Length = 226
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F +P + PEA+ GI P
Sbjct: 34 DVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACL-----AAGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D TL L
Sbjct: 192 HSALYD---TLQTAKLF 205
>gi|110598328|ref|ZP_01386602.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
13031]
gi|110340026|gb|EAT58527.1| DNA polymerase III, epsilon subunit [Chlorobium ferrooxidans DSM
13031]
Length = 219
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 59/193 (30%), Gaps = 38/193 (19%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
+ V+ D+ET G DR + V ++ E + + +
Sbjct: 5 LAESVVVLDFETTGLSPEYGDRAIEIGAVLLEEG-EIVGRFQKL---MNPGFRISQFIEG 60
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN----NIRFDDYYSRNIFYRNFY 115
TGIT + E + FS I G N N FD + R
Sbjct: 61 YTGITNEMLKGQPCCE-----EVMAEFSE---FIAGRNIVAHNAAFDRRFLDFELKRA-- 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA- 174
+ +++ L V R IY SP+ +LQ L GI
Sbjct: 111 ---KRAYEGSCCCS--LLVSRRIYQDSPNH-------------RLQTLVSHAGIRQTGVF 152
Query: 175 HDAKADVYATLAL 187
H A AD T L
Sbjct: 153 HRALADAEMTAQL 165
>gi|322650293|gb|EFY46707.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
Length = 205
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 44/135 (32%), Gaps = 19/135 (14%)
Query: 5 FVIY-----DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
F + D ET G + D + A + + + ++ F +P PE
Sbjct: 4 FSWFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPE 63
Query: 57 AVFITGITPQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS---- 106
A+ GI P LR V E E I + I+ +N FD +
Sbjct: 64 ALAFNGIDPSNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAA 123
Query: 107 -RNIFYRNFYDSYRW 120
R RN + +
Sbjct: 124 GRASLKRNPFHPFVT 138
>gi|309807670|ref|ZP_07701611.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
iners LactinV 01V1-a]
gi|308169103|gb|EFO71180.1| putative CRISPR-associated endoribonuclease Cas2 [Lactobacillus
iners LactinV 01V1-a]
Length = 275
Score = 40.6 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 32/191 (16%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFI 60
T +VI D ET G D + + +++ + IE C + LP+ +
Sbjct: 106 TKPYVIIDLETTGLDYINNNIIEIGAIKIAKN---IEEYS---CIVKQNITLPNAIKIL- 158
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + L++G E+ + + F ++GYN + FD + RN
Sbjct: 159 TGISDAE-LKNGKDESVAIKELCTFIGDK--ALVGYN-VNFDIRFINEALKRNGQSQLT- 213
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N +D++ Y ++KL + GI H A D
Sbjct: 214 -----NKVYDVMK-----YVKRDKMF--------LKNYKLDTVLSEYGINIKVPHRAIED 255
Query: 181 VYAT-LALVWL 190
V L + L
Sbjct: 256 VKIIQLLISKL 266
>gi|321223519|gb|EFX48584.1| Putative exonuclease [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
Length = 194
Score = 40.6 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 63/198 (31%), Gaps = 28/198 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPE 56
+ N ++ D ET G + + D + KP D E
Sbjct: 16 LDNDYLFIDTETTGLG-DDAEIVEICII--DSHGFIMLNTLIKPT----KPIPD-----E 63
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
A+ I GIT + + + + + F I N FD R + N
Sbjct: 64 AIAIHGIT-NEMVAFAPAWTDICGAVEEIFRRFGFVIY---NADFDLRLIRQTYALNERP 119
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAH 175
S W + M+ + + P R +G KL D A G+ AH
Sbjct: 120 SEGAPWMLAAHS---VCAMKLYAEYRGE----PGRFNGYKWHKLVDAAAHEGVVVEDKAH 172
Query: 176 DAKADVYATLALVWLIRE 193
A AD TL LV + +
Sbjct: 173 RALADCKMTLGLVRALAK 190
>gi|258544438|ref|ZP_05704672.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826]
gi|258520327|gb|EEV89186.1| oligoribonuclease [Cardiobacterium hominis ATCC 15826]
Length = 178
Score = 40.6 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
++ V D E G D D + A + D Q +
Sbjct: 4 PDNLVWIDLEMTGLDSQRDHILEIATLITDAQLNILAE 41
>gi|145598067|ref|YP_001162143.1| ribonuclease T [Yersinia pestis Pestoides F]
gi|170024107|ref|YP_001720612.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
gi|145209763|gb|ABP39170.1| RNAse T [Yersinia pestis Pestoides F]
gi|169750641|gb|ACA68159.1| ribonuclease T [Yersinia pseudotuberculosis YPIII]
Length = 226
Score = 40.6 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + E + T F +P + PEA+ GI P
Sbjct: 34 DVETAGFNAQSDALLEIAAVTLQMNKEGWLLPDETLHFHVEPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEHDALHAIFKAVRKGIKDKGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACL-----AAGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D TL L
Sbjct: 192 HSALYD---TLQTAKLF 205
>gi|325265145|ref|ZP_08131871.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
gi|324029549|gb|EGB90838.1| DNA polymerase III PolC-type (PolIII) [Clostridium sp. D5]
Length = 233
Score = 40.6 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 38/207 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M ++ +D ET G + + + ++V K++ + F +P ++ P + +
Sbjct: 1 MLKSYIAFDLETTGLNPEQNEIIEIGALKVRDG--KVQERFMEFVRPTENI--SPVVMNL 56
Query: 61 TGIT---PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
TGIT A V +F F + +IG+N I FD + + D
Sbjct: 57 TGITNEMVADARSSRNVIPDFLD-----FCG-DDILIGHNVI-FDYSFVKIGAMAEGLD- 108
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ + +D ++ D S L L IE+ AH A
Sbjct: 109 FERAG---------IDTLKIARKVHKD----------MESKSLGCLCDYYHIENNAAHRA 149
Query: 178 KADVYATLA----LVWLIREKKPKLFE 200
D AT L ++PK+F+
Sbjct: 150 YHDALATAKLYQTLAHYFEAQEPKIFQ 176
>gi|183983834|ref|YP_001852125.1| oligoribonuclease Orn [Mycobacterium marinum M]
gi|183177160|gb|ACC42270.1| oligoribonuclease Orn [Mycobacterium marinum M]
Length = 215
Score = 40.6 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M V D E G D+ D+ + A + D +
Sbjct: 1 MREELVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGD 39
>gi|126737494|ref|ZP_01753224.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Roseobacter sp. SK209-2-6]
gi|126720887|gb|EBA17591.1| exonuclease, DNA polymerase III, epsilon subunit family protein
[Roseobacter sp. SK209-2-6]
Length = 465
Score = 40.6 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 33/198 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEA-VFIT 61
F ++D ET G D Q +R V+ + E E P D P A +
Sbjct: 257 SFTVFDTETTGLLPHKDEIVQIGALRVVNGRLVNGEGFETL-VNPGFDI---PAASTAVH 312
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
G+T + + + + F + + +N FD + R + D
Sbjct: 313 GVTTE--MVRNSPMIKTAGAAFHQFCKDSVLVA--HNAPFDIAFLRRHAKSSGVD----- 363
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
W++ +LD + G P D A +L+ I H A D
Sbjct: 364 WNHM-----VLDTVLLSAVIF--GASVPHTLD-ALCDRLEI-----NIPEALRHTAMGDA 410
Query: 182 YATLA-LVWLIREKKPKL 198
AT L+ ++ P L
Sbjct: 411 QATAEALLRML----PML 424
>gi|317133746|ref|YP_004089657.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
gi|315450208|gb|ADU23771.1| Exonuclease RNase T and DNA polymerase III [Ruminococcus albus 7]
Length = 284
Score = 40.6 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 38/190 (20%)
Query: 9 DYETFGRDVALDRPAQFAGVR--VDRQWEK-IESTEVFFCKPADDYLPDPEAV-FITGIT 64
D ET GR QFAG++ +D+ I + F KP +P E + ITG T
Sbjct: 28 DLETTGRSAKDSYVFQFAGLKCIIDKSLTPKIIESLCVFIKPE---VPLNERITEITGFT 84
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ E F RI +F CI+ +N F++ + ++ RN
Sbjct: 85 NEDLKDKADEETVF-PRIKKFMDN---CIMCSHNTAFEESFMNAMYARN----------- 129
Query: 125 GNSR--WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADV 181
G +++D ++ + S KL +A GI V HDA+ D
Sbjct: 130 GCVFKPAEIIDTLKMSRDLHKEE----------KSHKLGVIAERYGIADGVKFHDARDD- 178
Query: 182 YATLALVWLI 191
T+ L+
Sbjct: 179 --TIICGRLL 186
>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 3_1_33]
gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 3_1_33]
Length = 1449
Score = 40.6 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 420 EEFVVFDIETTGLNSHTNEIIEIGAVKIKA-----GRIVDRYSQLINPGRPIPYHITEIT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + + I +F ++ +N FD + + + Y+ S
Sbjct: 475 SITDEQVA----NEPKIDKVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 531 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 571
Query: 182 YATLAL 187
AT +
Sbjct: 572 QATANM 577
>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
Length = 1449
Score = 40.6 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 420 EEFVVFDIETTGLNSHTNEIIEIGAVKIKA-----GRIVDRYSQLINPGRPIPYHITEIT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + + I +F ++ +N FD + + + Y+ S
Sbjct: 475 SITDEQVA----NEPKIDKVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 531 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 571
Query: 182 YATLAL 187
AT +
Sbjct: 572 QATANM 577
>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
Length = 1493
Score = 40.6 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------ 59
V++D ET G + +F V ++ + + DYL P+
Sbjct: 441 VVFDLETTGLSPEFNEIIEFGAVV----FDPVTGKTTKY-----DYLFKPKQPLKQFTID 491
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD 102
+T ITP+ ++ +F +I++ I+ +N FD
Sbjct: 492 LTNITPEMLEDKKNIDDDF-DKIYELIKDS---ILVAHNANFD 530
>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
Length = 1571
Score = 40.6 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 40/191 (20%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+V++D ET G D+ + AGV++ + KI + F DP+
Sbjct: 480 TYVVFDLETTGLSNVRDKIIEIAGVKIKKG-NKIGEFQKFI---------DPQQKLTKTI 529
Query: 60 --ITGITPQKALRDGVVEAEFSRRIH-QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
IT IT + + ++ QF + C++ +N FD NF
Sbjct: 530 TDITNITDEMLQGQ-----QTIDQVLPQFLAFAKDCVLVAHNASFD---------INFLK 575
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++D M + + +++ F L+ LA ++ + H
Sbjct: 576 EKAKELKISLEPQPIIDTMALSQRYFSNLLKY---------FSLKRLATFFKVKLEDHHR 626
Query: 177 AKADVYATLAL 187
A AD AT +
Sbjct: 627 ALADATATAEI 637
>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 241
Score = 40.6 bits (94), Expect = 0.59, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 19/90 (21%)
Query: 5 FVIYDYETFGRD---VALD--RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
+++D ET G + + R + V E I F D DPE
Sbjct: 8 IIVFDTETTGMNMSGPHYEGHRIIEIGAV------EIINRKLTGNTFHVYIKPDRPIDPE 61
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFF 86
A+ + GIT + + G IHQ F
Sbjct: 62 AIDVHGITDEFLV--GKPSY---AEIHQEF 86
>gi|317010079|gb|ADU80659.1| DNA polymerase III subunit epsilon [Helicobacter pylori India7]
Length = 287
Score = 40.6 bits (94), Expect = 0.59, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 58/186 (31%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ D +TGI
Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYISD-----LTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L V E +++ F N+ + +N FD + F +
Sbjct: 127 AYEDTLNAPSVH-EALQKLRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|317503311|ref|ZP_07961361.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
DSM 15606]
gi|315665570|gb|EFV05187.1| DNA-directed DNA polymerase III epsilon subunit [Prevotella salivae
DSM 15606]
Length = 286
Score = 40.6 bits (94), Expect = 0.59, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D ET G D+ DR Q + ++V ++ P PE IT +T
Sbjct: 9 LVVFDLETTGLDIVNDRIIQLSFIKVYPDGKE--ERGDHLINPGRHI---PE--MITELT 61
Query: 65 --PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ ++D + S + + F G+N+ RFD F R D
Sbjct: 62 GIDDEKVKDAPSFKQISTTLAETF--KGCDFAGFNSNRFDVPMLAEEFLRAGID 113
>gi|269125505|ref|YP_003298875.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora
curvata DSM 43183]
gi|268310463|gb|ACY96837.1| Exonuclease RNase T and DNA polymerase III [Thermomonospora
curvata DSM 43183]
Length = 204
Score = 40.6 bits (94), Expect = 0.59, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G D+ D + A + D + ++ KP ++ L
Sbjct: 1 MNDLLVWADCEMTGLDLRKDALVEIAVLVTDSELNILDKGVDVVIKPPEEAL 52
>gi|326565468|gb|EGE15639.1| ribonuclease T [Moraxella catarrhalis 12P80B1]
gi|326572590|gb|EGE22579.1| ribonuclease T [Moraxella catarrhalis CO72]
Length = 232
Score = 40.6 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 59/191 (30%), Gaps = 29/191 (15%)
Query: 9 DYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + A D + A + +D +P D +P A+ TGI P
Sbjct: 25 DVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTGINP 84
Query: 66 QKALRDGVVEAE--FSRRIHQFFSV-------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
R + E E RRI + ++G+N FD + R
Sbjct: 85 DSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNA-HFDLGFLNAAIARTNSK 143
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ S + S D + Y G T + ++ +AH
Sbjct: 144 N--HSPFHTFSVLDTVSFAALTY--------------GHTVLAKTCMIAGLEFDNQHAHS 187
Query: 177 AKADVYATLAL 187
A D T L
Sbjct: 188 ALYDAQKTAEL 198
>gi|242780586|ref|XP_002479627.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC
10500]
gi|218719774|gb|EED19193.1| RNA exonuclease Rex2, putative [Talaromyces stipitatus ATCC
10500]
Length = 189
Score = 40.6 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
T V D E G D D+ Q D Q + IE
Sbjct: 7 TAPLVWVDCEMTGLDPETDQILQICCFVTDAQLQLIE 43
>gi|82701847|ref|YP_411413.1| oligoribonuclease [Nitrosospira multiformis ATCC 25196]
gi|82409912|gb|ABB74021.1| Exonuclease [Nitrosospira multiformis ATCC 25196]
Length = 184
Score = 40.6 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 62/206 (30%), Gaps = 54/206 (26%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI---- 60
+ D E G DR + A V D Q E + V L E+V
Sbjct: 8 LIWIDMEMSGLSPDRDRILEIALVVTDSQLEVLAEAPVL-------VLSQSESVLEGMDS 60
Query: 61 -TGITP------QKALRDGVVEAE----FSRRIHQFFS--VPNTCIIGYNNIRFDDYYSR 107
T +K G+ EAE + + S V C N+I D R
Sbjct: 61 WNKSTHAKSGLVEKVRASGLTEAEVEVHMIAFLQEHISAGVSPMCG---NSICQDR---R 114
Query: 108 NIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN 167
+ + + N D+ + + P+ +
Sbjct: 115 FLARWMPRLEAYFHYRN----LDVSTLKELAKRWKPEILA-------------------- 150
Query: 168 GIEHVNAHDAKADVYATLALVWLIRE 193
G+ H+A +D+Y ++A + RE
Sbjct: 151 GVTKQCKHEALSDIYDSIAELKYYRE 176
>gi|320161625|ref|YP_004174850.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
gi|319995479|dbj|BAJ64250.1| hypothetical protein ANT_22240 [Anaerolinea thermophila UNI-1]
Length = 194
Score = 40.6 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 28/190 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ ++ + D ET G A D + + V + E + + V +P P+A+ +
Sbjct: 21 LKHNPIYLDTETTGLS-AQDEIIEISIV--NDNGEVVYESLVRPTRPIP-----PDAIAV 72
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI+ + + + + + +I YN FD + R
Sbjct: 73 HGISNEDVQKARPWHIVW-QEVRPILLNAGVVVI-YNE-EFDLRMMQQSHARLGLP---- 125
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN---GIEHVNAHDA 177
W + +DL+ + Y +W D +++ L A GI NAH A
Sbjct: 126 -WRDRFRTFDLMKLYAEYYG------EW---DPKRRAYRYHSLDAAGKHCGITLPNAHRA 175
Query: 178 KADVYATLAL 187
AD T AL
Sbjct: 176 TADTLLTRAL 185
>gi|304392717|ref|ZP_07374657.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
gi|303295347|gb|EFL89707.1| DNA polymerase III, epsilon subunit [Ahrensia sp. R2A130]
Length = 249
Score = 40.6 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 4 HFVIYDYETFGRD-VALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
H +I+D ET G DR + V + + T + P D + P+A+ + G
Sbjct: 2 HAIIFDTETTGLSAKDGDRVIEIGAVEM-KDLIPTGRTFHQYIHPGDREI-HPDALRVHG 59
Query: 63 ITPQKALRDGVVEA 76
IT ++ + EA
Sbjct: 60 ITMERLADEPRFEA 73
>gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
Length = 255
Score = 40.6 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 57/187 (30%), Gaps = 41/187 (21%)
Query: 9 DYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVF 59
D ET G + R + V E I F D EA+
Sbjct: 27 DTETTGMNTEGGPHYMGHRIVEIGAV------EIINRKLTGRHFHVYIKPDRAIQEEAIG 80
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GIT + + E + IH+ F ++ +N FD + F + D
Sbjct: 81 VHGITDEFLVDK--PEY---QDIHKEFLDFIKGAELVAHNA-PFDTGFMDYEFEK--LDP 132
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAH 175
D+ D LD+ + I+ P + + L L GI H H
Sbjct: 133 TIGKTDDYCKVTDTLDMAKKIF---------PGKRNN-----LDILCERYGIDNSHRTLH 178
Query: 176 DAKADVY 182
A D
Sbjct: 179 GALLDAE 185
>gi|329901259|ref|ZP_08272784.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
IMCC9480]
gi|327549191|gb|EGF33783.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
IMCC9480]
Length = 462
Score = 40.6 bits (94), Expect = 0.61, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 56/196 (28%), Gaps = 33/196 (16%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-IT 61
D ET G +DR + V VD P PE + +T
Sbjct: 8 PRLAFVDLETTGATAVIDRITEVGIVEVDEDGV---RHWSSLVNPHRHI---PEFIEGLT 61
Query: 62 GITPQK-ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GI+ A G E + IHQ + +N RFD + +N F R D
Sbjct: 62 GISNAMVADAPGFDE--LAAEIHQRL--EGRIFLAHNA-RFDHGFLKNEFKRVGIDFRPT 116
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+L ++ P+ L LA + ++ H A D
Sbjct: 117 ----------VLCTVKLSRKLYPE----------FAKHNLDTLAERHQLQVTERHRALGD 156
Query: 181 VYATLALVWLIREKKP 196
I P
Sbjct: 157 AQLIWQFWETIHTTFP 172
>gi|329119491|ref|ZP_08248176.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464424|gb|EGF10724.1| DNA polymerase III, epsilon subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 484
Score = 40.6 bits (94), Expect = 0.61, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 56/175 (32%), Gaps = 29/175 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR + A +R D + V +P P +TGI
Sbjct: 47 DLETTGGSFDTDRITEIAFLRFDGGTVTPYHSLVHPERPIP-----PFIRRLTGI--GDE 99
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G FS H+ + CI+ +N +FD + R F R +
Sbjct: 100 TVAGAPP--FSALAHELLPLLRGCILLAHNSKFDYTFLRRAFARCGLPFAAPT------- 150
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
L ++ P S L+ + +GI + H A DV A
Sbjct: 151 ---LCTVQLSRRLYPQFY--------KHS--LESIIERHGIAAASRHRATDDVLA 192
>gi|296113547|ref|YP_003627485.1| ribonuclease T [Moraxella catarrhalis RH4]
gi|295921241|gb|ADG61592.1| ribonuclease T [Moraxella catarrhalis RH4]
gi|326559550|gb|EGE09964.1| ribonuclease T [Moraxella catarrhalis 7169]
gi|326564652|gb|EGE14870.1| ribonuclease T [Moraxella catarrhalis 46P47B1]
gi|326567767|gb|EGE17873.1| ribonuclease T [Moraxella catarrhalis BC1]
Length = 232
Score = 40.6 bits (94), Expect = 0.61, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 59/191 (30%), Gaps = 29/191 (15%)
Query: 9 DYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + A D + A + +D +P D +P A+ TGI P
Sbjct: 25 DVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTGINP 84
Query: 66 QKALRDGVVEAE--FSRRIHQFFSV-------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
R + E E RRI + ++G+N FD + R
Sbjct: 85 DSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNA-HFDLGFLNAAIARTNSK 143
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ S + S D + Y G T + ++ +AH
Sbjct: 144 N--HSPFHTFSVLDTVSFAALTY--------------GHTVLAKTCMIAGLEFDNQHAHS 187
Query: 177 AKADVYATLAL 187
A D T L
Sbjct: 188 ALYDAQKTAEL 198
>gi|239932092|ref|ZP_04689045.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
gi|291440458|ref|ZP_06579848.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
gi|291343353|gb|EFE70309.1| DNA polymerase III subunit epsilon [Streptomyces ghanaensis ATCC
14672]
Length = 327
Score = 40.6 bits (94), Expect = 0.61, Method: Composition-based stats.
Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 33/176 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T +
Sbjct: 27 DVETTGL-ARDDRIVSAAVYRLDAR-GEVEDHWYTVVNPERD----PGPVWIHGLTSEAL 80
Query: 69 LRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+G R + + F+ ++ +N + FD +
Sbjct: 81 --EGAP---LFRDVAEEFATRLEGRVLVAHNAV-FDWQM------------IAREYARAR 122
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
S + + I G+ P+ KL+ LA G+ AH A D
Sbjct: 123 SEAPVKQRLCTIALSKELGLPLPNH-------KLESLAAHFGVVQRRAHHALDDAR 171
>gi|146280991|ref|YP_001171144.1| hypothetical protein PST_0596 [Pseudomonas stutzeri A1501]
gi|145569196|gb|ABP78302.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
Length = 185
Score = 40.6 bits (94), Expect = 0.61, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 23/145 (15%)
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNI 109
P A+ +TG++ ++ +G+ E + + + +G+N FD +
Sbjct: 53 PAALEVTGLSLERLREEGLEPGEAMAQFRAWVESLADADQRVVFVGFNA-SFDWSFVNYY 111
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F+ ++ I A + + + + S + ++
Sbjct: 112 FHLFLGENP-----------------FGIAALDIKSMYFGASECAWKSTRSSEIEKVVNP 154
Query: 170 EHVNAHDAKADVYATLALVWLIREK 194
E HDA D L LIREK
Sbjct: 155 ESSGNHDALDDAVYQAELFNLIREK 179
>gi|206976138|ref|ZP_03237047.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217961012|ref|YP_002339580.1| DNA polymerase III subunit epsilon [Bacillus cereus AH187]
gi|222097065|ref|YP_002531122.1| DNA polymerase iii subunit epsilon [Bacillus cereus Q1]
gi|229140223|ref|ZP_04268781.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
gi|206745592|gb|EDZ56990.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
H3081.97]
gi|217066526|gb|ACJ80776.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH187]
gi|221241123|gb|ACM13833.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
gi|228643309|gb|EEK99582.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST26]
Length = 315
Score = 40.6 bits (94), Expect = 0.62, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + A + KL+ L GI + H+A
Sbjct: 114 --EPQNK-----VIDTVFLA----------KKYMKHAPNHKLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|198284062|ref|YP_002220383.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665313|ref|YP_002426714.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248583|gb|ACH84176.1| Exonuclease RNase T and DNA polymerase III [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517526|gb|ACK78112.1| oligoribonuclease Orn [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 194
Score = 40.6 bits (94), Expect = 0.62, Method: Composition-based stats.
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
+ + D E G D+ + A + D +
Sbjct: 5 AHRLIWIDLEMTGLHPGQDQILEIATLVTDDSLRIL 40
>gi|312140423|ref|YP_004007759.1| exonuclease [Rhodococcus equi 103S]
gi|311889762|emb|CBH49079.1| exonuclease [Rhodococcus equi 103S]
Length = 199
Score = 40.6 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G + D+ + A + D +
Sbjct: 1 MQDKLVWIDCEMTGLRLGSDKLIEIAALVTDSDLNILGE 39
>gi|293372861|ref|ZP_06619235.1| exonuclease [Bacteroides ovatus SD CMC 3f]
gi|292632150|gb|EFF50754.1| exonuclease [Bacteroides ovatus SD CMC 3f]
Length = 266
Score = 40.6 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 47/193 (24%)
Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA-VFITGITP 65
+D ET G ++ DR + ++V + + P PEA I GI
Sbjct: 18 FFDLETTGTNINTDRIVEICYLKVYPNGNE--EAKTLRINPEMHI---PEASSAIHGI-- 70
Query: 66 QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
VV+ + + + + + G+N+ RFD F R D
Sbjct: 71 ---YDADVVDCPTFKEVAKNIARDIEGCDLAGFNSNRFDIPVLAEEFLRAGVD------- 120
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQD--LALANGI----EHVNAHD 176
+D+ + + D F K++ L+ A +AH
Sbjct: 121 --------IDMTKRKFV------------DVQVIFHKMEQRTLSAAYKFYCDKNLEDAHT 160
Query: 177 AKADVYATLALVW 189
A+AD AT ++
Sbjct: 161 AEADTRATYEVLK 173
>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
Length = 1455
Score = 40.6 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFI 60
+ +V++D ET G + +F V + + + FF K + P P E I
Sbjct: 398 SARYVVFDLETTGLSPVYNEIIEFGAVVIQDGIQT--ESHQFFVKAKE---PIPTEITKI 452
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
T IT + G+ E RI + I+ +N +FD + +F
Sbjct: 453 TNITQEMVDEQGIEATEAFYRISKIIKDS---ILVAHNAKFDFNFLAELF 499
>gi|227015888|gb|ACP17985.1| putative exonuclease RNase T and DNA polymerase III [Pseudomonas
nitroreducens]
Length = 182
Score = 40.6 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 23/145 (15%)
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRR---IHQFFSVPNT--CIIGYNNIRFDDYYSRNI 109
P A+ +TG++ K +G+ + ++ + +G+N FD +
Sbjct: 53 PAAMEVTGLSLNKLREEGLSPIKAMKQFKVWVDSLAGEGASVIFVGFNA-SFDWAFVNYY 111
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F+ + G + D+ + + G W S + D+
Sbjct: 112 FH-----EFIGENPFGIAALDIKSMYFGV-----AGSTW-------KSTRSSDIDKVLNP 154
Query: 170 EHVNAHDAKADVYATLALVWLIREK 194
HDA D L LIR+K
Sbjct: 155 SSKGDHDALHDAVYQAELFNLIRQK 179
>gi|194445493|ref|YP_002040683.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194404156|gb|ACF64378.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
Length = 215
Score = 40.6 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + ++ F +P PEA+ GI P
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + I+ +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFVT 148
>gi|72161431|ref|YP_289088.1| hypothetical protein Tfu_1027 [Thermobifida fusca YX]
gi|71915163|gb|AAZ55065.1| DNA polymerase III, epsilon subunit [Thermobifida fusca YX]
Length = 590
Score = 40.6 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 33/201 (16%)
Query: 14 GRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGITPQKALRDG 72
G A + VR+ R + ++ P P ++ +TGIT A+ +
Sbjct: 57 GTHPATAALIEVGAVRL-RDGQVLDEFTTL---VNPHA-PVPASITLLTGIT--TAMVES 109
Query: 73 VVEAEFSRRIHQFFS--VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWD 130
+ F+ P T ++ +N FD + + R+ W +
Sbjct: 110 APSPAAALSAFLDFAGFRPGTVLVAHNA-PFDVRFLKAACARHGIP-----WPSPA---- 159
Query: 131 LLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVW- 189
+LD ++ P G + +L LA G H AH A D AT ++
Sbjct: 160 VLDTLQLARRLVPRG--------EVRNHRLDTLARVFG-AHPPAHRALDDARATADVLRG 210
Query: 190 ---LIREKKPKLFEYLYDYRN 207
+R + +E L +R+
Sbjct: 211 LVGRLRARGVDTWEELRAFRS 231
>gi|315266132|gb|ADT92985.1| Exonuclease RNase T and DNA polymerase III [Shewanella baltica
OS678]
Length = 204
Score = 40.6 bits (94), Expect = 0.64, Method: Composition-based stats.
Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 54/219 (24%)
Query: 1 MTNHFVIYDYETFGRDVALDR---------PAQFAGVRVDRQWEKIESTEVFFCKPADDY 51
M+ +F+ D ET G + LD + A + D + ++ D++
Sbjct: 1 MSMYFLFGDIETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHIVVHQDDEH 60
Query: 52 L--PDPEAVFIT---GITPQKALRDGVVEAEFSRRIHQFF-----------SVPNTCIIG 95
+ A+ + G+ V A+ + + + + G
Sbjct: 61 IARSHEWAIDVHTKSGLLVA-VRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAG 119
Query: 96 YNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGA 155
N+I D F + + + D+ + A A++P+
Sbjct: 120 -NSIMLD-----RSFIMCQMPEL-HEYMHY-RQLDISALGLAARAWAPEV---------- 161
Query: 156 TSFKLQDLALANGIEHVNA-HDAKADVYATLALVWLIRE 193
N I+ H+A AD+ ++A + R+
Sbjct: 162 ---------ERNAIKAKQYQHEALADIRESIAELKYYRD 191
>gi|239631926|ref|ZP_04674957.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239526391|gb|EEQ65392.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 172
Score = 40.6 bits (94), Expect = 0.64, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 34/199 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI- 63
+VI D E + +R Q + VR+ + F +P P+ I
Sbjct: 4 YVIMDTE---FNSTSNRAIQISAVRIRDGLHIADQFNRF--------IPSPDKFDQLHII 52
Query: 64 -TPQKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T D + + + + T I+G+ +I D R F +
Sbjct: 53 RTSNMRYSDYLALPSLQQTVRDYVAWMRTTTDIVGW-SIEGDAGRIRETF-KQGSHGIPK 110
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+W D+ D++ Y F+ P LQ LA GI AH+A D
Sbjct: 111 NWK----FIDIADIVGKQYNFN----ATPP---------LQGLANVLGIPANRAHNALDD 153
Query: 181 VYATLALVWLIREKKPKLF 199
T ++ + + KLF
Sbjct: 154 CLRTFGVIKELESRDGKLF 172
>gi|328885949|emb|CCA59188.1| putative DNA polymerase III epsilon subunit [Streptomyces
venezuelae ATCC 10712]
Length = 240
Score = 40.6 bits (94), Expect = 0.65, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 20/121 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFIT 61
+D ET G D R A + + + + D L DP +A I
Sbjct: 11 FDLETTGTDPLEARIVT-ASI--------VGFHDGRVVRQRDW-LADPGIRIPEQASAIH 60
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV-PNTC--IIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI+ ++A +G E + I + + N ++ YN FD R+ S
Sbjct: 61 GISSERAAAEGRPVREVADEIAETLTGYWNQGVPVVAYNA-SFDLTLLAAELRRHGLPSL 119
Query: 119 R 119
Sbjct: 120 E 120
>gi|227503021|ref|ZP_03933070.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
gi|227076082|gb|EEI14045.1| oligoribonuclease [Corynebacterium accolens ATCC 49725]
Length = 213
Score = 40.6 bits (94), Expect = 0.65, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D + A V D +
Sbjct: 16 LVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGK 50
>gi|296119762|ref|ZP_06838316.1| putative DNA polymerase III epsilon subunit [Corynebacterium
ammoniagenes DSM 20306]
gi|295966916|gb|EFG80187.1| putative DNA polymerase III epsilon subunit [Corynebacterium
ammoniagenes DSM 20306]
Length = 1149
Score = 40.6 bits (94), Expect = 0.65, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 32/191 (16%)
Query: 1 MTNH--FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
M+ H F + D+E G A DR + V +D ++E T +P + P +
Sbjct: 1 MSQHNKFAVVDFEATGLSAA-DRIVEIGVVLLDNNL-EVEQTWDTLVQPNREV---PNS- 54
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
F+ +T + E T + +N F++++ R F R
Sbjct: 55 FVHKLTTADLEK--APTFEGISAKFASLLDGRTVVA--HNASFEEHFMRQEFSR-----L 105
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W N W + + + + Q + LA A GI + N H A
Sbjct: 106 GVLWPNY-GSWIIDTAVLSEKFLNKSQFQ-------------EVLAAA-GIINKNPHQAL 150
Query: 179 ADVYATLALVW 189
+ AT L+
Sbjct: 151 SGAMATADLLK 161
>gi|300836940|ref|YP_003754017.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
gi|242205350|gb|ACS75438.1| putative exonuclease Ycg4D [Klebsiella pneumoniae]
Length = 233
Score = 40.6 bits (94), Expect = 0.65, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 16/122 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFITGITPQK 67
D ET G D+ + A D V C + DP+A+ + GIT +
Sbjct: 110 DTETTGLG-ERDQVIELA--VTDI------RGAVLLCTRLRPTVEIDPQAMGVHGITETE 160
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + + + + S + I N FD R F D W W N
Sbjct: 161 LSNEPTW-TQVAPALARLLSGRHLVIF---NSSFDSRMLRQT-ASAFGDQLSW-WQEQNC 214
Query: 128 RW 129
W
Sbjct: 215 LW 216
>gi|306836747|ref|ZP_07469709.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
gi|304567369|gb|EFM42972.1| oligoribonuclease [Corynebacterium accolens ATCC 49726]
Length = 213
Score = 40.6 bits (94), Expect = 0.66, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D + A V D +
Sbjct: 16 LVWIDLEMTGLDPERHVIVEVAAVITDGNLNILGK 50
>gi|220912933|ref|YP_002488242.1| oligoribonuclease [Arthrobacter chlorophenolicus A6]
gi|219859811|gb|ACL40153.1| Exonuclease RNase T and DNA polymerase III [Arthrobacter
chlorophenolicus A6]
Length = 208
Score = 40.2 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 15/116 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-------DYLPD 54
V D E G D+ D + A + D + + KP D D++ D
Sbjct: 5 NERIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGEGVDVVIKPDDAAVAQMNDFVRD 64
Query: 55 PEAVFIT--GITPQKALRDGVVEAEFSRR--IHQFFSVPNTCIIGYNNIRFDDYYS 106
T G+ + + EAE + I ++ P +G N++ D +
Sbjct: 65 ----MHTKSGLLKELPSGKTMAEAEAAVMEYIAEWVPEPRKAPLGGNSVGTDRVFL 116
>gi|70726458|ref|YP_253372.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
gi|123660231|sp|Q4L6F9|DING_STAHJ RecName: Full=Probable ATP-dependent helicase dinG homolog
gi|68447182|dbj|BAE04766.1| probable ATP-dependent DNA helicase [Staphylococcus haemolyticus
JCSC1435]
Length = 900
Score = 40.2 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 27/192 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ + D ET G + D Q G+ KI T + D P +A+ T
Sbjct: 4 TSYAVVDLETTGNQLDYDEIIQI-GI-TFVSNNKISGTYHSMIRTDLDIPPFIQAL--TS 59
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I L E ++ I++ + +N + FD + + F D
Sbjct: 60 IE-DTMLEQAPYFHEIAQEIYKQLKD--RVFVAHN-VDFDLNFIKKAFQNCNID------ 109
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L++ + Y P+ S++L +LA A+ I NAH A D
Sbjct: 110 FKPKKVLDTLELFKIAY---------PTDK----SYQLSELAEAHDIPLDNAHRADEDAT 156
Query: 183 ATLALVWLIREK 194
T L+ +K
Sbjct: 157 TTALLMIKAFQK 168
>gi|315612858|ref|ZP_07887769.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sanguinis ATCC 49296]
gi|315314968|gb|EFU63009.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus sanguinis ATCC 49296]
Length = 830
Score = 40.2 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 49/224 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI 60
+ +V+ D E + + Q G+ V E I+ A D P P I
Sbjct: 6 NDRYVVVDLEATSTG-SKAKIIQV-GIVVIENGEIIDQY-------ATDVNPHEPLDSHI 56
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFY 115
TG+T Q+ EFS+ + F V + + +N ++FD + + +F+ +
Sbjct: 57 KELTGLTDQRLAAA----PEFSQVAGKIFELVKDGIFVAHN-VQFDANLLAEFLFFEGYE 111
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P + L L GIE +AH
Sbjct: 112 LRTPR-----------VDTVELAQVLYPQ----------FEKYNLGILCQELGIELEHAH 150
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
A +D AT L+ +R+K +L K L L+D+ +
Sbjct: 151 TALSDAQATAELLLYMRQKLFEL--------PKGLLESLLDLAD 186
>gi|316936207|ref|YP_004111189.1| hypothetical protein Rpdx1_4915 [Rhodopseudomonas palustris DX-1]
gi|315603921|gb|ADU46456.1| hypothetical protein Rpdx1_4915 [Rhodopseudomonas palustris DX-1]
Length = 847
Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 39/217 (17%), Positives = 80/217 (36%), Gaps = 44/217 (20%)
Query: 273 LAKRLFTS---HDELKGLVPVPI-----KEVHLNKCPILMPIDYCKKEHFERWGIDHKRC 324
L +RLFT ++ + + K+VH +L+ + + + G+
Sbjct: 421 LPERLFTKPLARALIEQRRILALDAGANKQVHTALDALLIAPEVFAPDAGQYLGL--YTV 478
Query: 325 LENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQL 384
+ L R LR+ +++ + DG +D ++ + R A + L
Sbjct: 479 ADQLERARTDEALREVVGNLWSLAVSIE---------DGDASDAEKAL-----RAAQDAL 524
Query: 385 S-TLNLPFSDRRLPELFFRYRA-------------RNFPHTLSEKEKQDWLEHRKKMLTR 430
L D + +L + RA RN P L+ L+ K++ +
Sbjct: 525 KDALERGAPDDEIKQLTDKLRAALDAYMRQLAQQLRNNPQQLARP-----LDPNTKVMRQ 579
Query: 431 SRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYLQWV 467
+E +++ LS D K+ L++ L + L+ +
Sbjct: 580 QDLEAMIQRMERLSRSGDKDAAKQ-LLDQLAQMLENL 615
>gi|242373764|ref|ZP_04819338.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis M23864:W1]
gi|242348501|gb|EES40103.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
epidermidis M23864:W1]
Length = 900
Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 67/191 (35%), Gaps = 27/191 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ + D ET G + D Q G+ R + I+ + D P +T I
Sbjct: 5 TYAVVDLETTGNQLDYDEIIQI-GITFVRNQQIID---TYHSMIRTDLEIPPFIQALTSI 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
++ L E + I+ CI +NI FD + +N F
Sbjct: 61 E-EEMLAQAPYFNEVAEDIYNQIKD---CIFVAHNISFDLNFIKNAFDNCNI------QF 110
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D L++ + + P+ S++L +LA ++ I NAH A D
Sbjct: 111 RPKKVMDTLELFKIAF---------PTDK----SYQLSELAQSHNIPLTNAHRADEDATT 157
Query: 184 TLALVWLIREK 194
T L+ EK
Sbjct: 158 TAKLMIKAFEK 168
>gi|157145913|ref|YP_001453232.1| ribonuclease T [Citrobacter koseri ATCC BAA-895]
gi|166228562|sp|A8AH33|RNT_CITK8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|157083118|gb|ABV12796.1| hypothetical protein CKO_01664 [Citrobacter koseri ATCC BAA-895]
Length = 215
Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 56/191 (29%), Gaps = 38/191 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEVAAITLKMDEQGWLMP-DTTLHFHVEPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + S N I+ +N FD + R RN
Sbjct: 82 PSNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S + DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACLAAGMEFDGT-----------------Q 179
Query: 174 AHDAKADVYAT 184
AH A D T
Sbjct: 180 AHSALYDTERT 190
>gi|87198139|ref|YP_495396.1| DNA polymerase III, epsilon subunit [Novosphingobium
aromaticivorans DSM 12444]
gi|87133820|gb|ABD24562.1| DNA polymerase III, epsilon subunit [Novosphingobium
aromaticivorans DSM 12444]
Length = 230
Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 58/194 (29%), Gaps = 34/194 (17%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGI 63
+++D ET G D DR + + + ++ + VF C + +P EA + G+
Sbjct: 5 IVFDTETTGLDPRSGDRLVEIGCI---EMFNRVPTGAVFHCYFNPERDMPA-EAEAVHGL 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ AE + + F + +N FD + N +
Sbjct: 61 SIAFLSDKPKF-AEKADDLLAFIADSPMVA---HNAGFDFGFINNELELCGREPVSRDR- 115
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADV 181
++D + P L L GI H H A D
Sbjct: 116 -------MVDTVAIARRKHP-----------GAKLSLDALCSRYGIDRSHRTKHGALLDA 157
Query: 182 YATLALVWLIREKK 195
L L E +
Sbjct: 158 EL---LAQLYVELQ 168
>gi|16760479|ref|NP_456096.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|16764782|ref|NP_460397.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29141761|ref|NP_805103.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56413597|ref|YP_150672.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|167551596|ref|ZP_02345350.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167994263|ref|ZP_02575355.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168229807|ref|ZP_02654865.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168235505|ref|ZP_02660563.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168240948|ref|ZP_02665880.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168264727|ref|ZP_02686700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|194451220|ref|YP_002045472.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194469134|ref|ZP_03075118.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194737431|ref|YP_002114446.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197251543|ref|YP_002146611.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197264202|ref|ZP_03164276.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197362521|ref|YP_002142158.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|200389402|ref|ZP_03216013.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|213426003|ref|ZP_03358753.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213586461|ref|ZP_03368287.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
gi|213609934|ref|ZP_03369760.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
gi|213649691|ref|ZP_03379744.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|213855187|ref|ZP_03383427.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
gi|238913165|ref|ZP_04657002.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|289805704|ref|ZP_06536333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. AG3]
gi|289824912|ref|ZP_06544333.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|54039259|sp|P66685|RNT_SALTI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|54042002|sp|P66684|RNT_SALTY RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|81821446|sp|Q5PH07|RNT_SALPA RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|25356018|pir||AD0695 ribonuclease T [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16419954|gb|AAL20356.1| RNase T [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|16502775|emb|CAD01933.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi]
gi|29137389|gb|AAO68952.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56127854|gb|AAV77360.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|194409524|gb|ACF69743.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194455498|gb|EDX44337.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194712933|gb|ACF92154.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197093998|emb|CAR59494.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|197215246|gb|ACH52643.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197242457|gb|EDY25077.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197291124|gb|EDY30477.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|199601847|gb|EDZ00393.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|205323544|gb|EDZ11383.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205327828|gb|EDZ14592.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205335262|gb|EDZ22026.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205339447|gb|EDZ26211.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205346854|gb|EDZ33485.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Hadar
str. RI_05P066]
gi|261246638|emb|CBG24448.1| Exoribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267993323|gb|ACY88208.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301157967|emb|CBW17462.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312912417|dbj|BAJ36391.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224052|gb|EFX49115.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|323129704|gb|ADX17134.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|332988319|gb|AEF07302.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 215
Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + ++ F +P PEA+ GI P
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + I+ +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFVT 148
>gi|118478852|ref|YP_896003.1| DNA polymerase III subunit epsilon [Bacillus thuringiensis str. Al
Hakam]
gi|196038559|ref|ZP_03105868.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|196044683|ref|ZP_03111918.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|225865592|ref|YP_002750970.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|229092581|ref|ZP_04223732.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
gi|229185845|ref|ZP_04313018.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|118418077|gb|ABK86496.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
Hakam]
gi|196024718|gb|EDX63390.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB108]
gi|196030967|gb|EDX69565.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
NVH0597-99]
gi|225789766|gb|ACO29983.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
03BB102]
gi|228597557|gb|EEK55204.1| DNA polymerase III alpha subunit [Bacillus cereus BGSC 6E1]
gi|228690734|gb|EEL44510.1| DNA polymerase III alpha subunit [Bacillus cereus Rock3-42]
Length = 315
Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPQNKVIDTVLLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|88811452|ref|ZP_01126707.1| ribonuclease T [Nitrococcus mobilis Nb-231]
gi|88791341|gb|EAR22453.1| ribonuclease T [Nitrococcus mobilis Nb-231]
Length = 222
Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 59/196 (30%), Gaps = 42/196 (21%)
Query: 9 DYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFITGI 63
D ET G + + D Q A VR+D + +P D DP+++ I
Sbjct: 31 DIETGGLNASTDALLQLAAVIVRMDEDKRVF--PAGTYSTHVEPFDGANIDPKSLEFNRI 88
Query: 64 TPQKALRDGVVEAEFSRR----IHQFFSVPNT---CIIGYNNIRFD-----DYYSRNIFY 111
P LR E E R I + ++G+N+ FD +R
Sbjct: 89 DPNHPLRMAKPEEEALRHIFRPIRREIRETGCTRAILVGHNSW-FDLCFLNAAVARTGIR 147
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEH 171
RN + + S+D A G W DG
Sbjct: 148 RNPFHPF-TSFDTATLGGLAFGQTVLARAVKASGASW----DGR---------------- 186
Query: 172 VNAHDAKADVYATLAL 187
AH A D T L
Sbjct: 187 -EAHSAIYDAEKTAEL 201
>gi|239833112|ref|ZP_04681441.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
3301]
gi|239825379|gb|EEQ96947.1| DNA polymerase III, epsilon subunit [Ochrobactrum intermedium LMG
3301]
Length = 233
Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats.
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 27/177 (15%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T + P + EA+ + GI+
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELINKF-PTGRTFHKYINPQGRQV-HAEALAVHGISN 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
++ L F+ + +F + + +N FD + R +
Sbjct: 62 EQLLDK----PTFAEILDEFLEFFDGAKLVAHNAMFDLGFINAELARLGQAEIQVE---- 113
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
D L + R + P+ L L GIE H H A D
Sbjct: 114 -RVVDTLALARRKHPMGPNS--------------LDALCKRYGIENGHRTLHGALLD 155
>gi|227550341|ref|ZP_03980390.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
TX1330]
gi|257886431|ref|ZP_05666084.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
gi|227180543|gb|EEI61515.1| possible DNA polymerase III subunit epsilon [Enterococcus faecium
TX1330]
gi|257822287|gb|EEV49417.1| DNA polymerase III epsilon subunit [Enterococcus faecium 1,231,501]
Length = 297
Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 27/198 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V+ D+ET G Q ++ + E+I+ + + IT
Sbjct: 124 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFR--SNISKRITK 177
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D V F Q S + + +N FD + + ++ ++ +
Sbjct: 178 IT-GLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFD---LKFLLHQLNENNIELNQ 233
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + A + + + + K L L N N+HDA D
Sbjct: 234 R--IRVIDTLPL-----ARR----HFETPNHKLITLK-DYLNLDN-----NSHDALEDCL 276
Query: 183 ATLALVWLIREKKPKLFE 200
T + I+ + K+ +
Sbjct: 277 VTNKVYQYIKHENNKIVQ 294
>gi|254447860|ref|ZP_05061325.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
HTCC5015]
gi|198262640|gb|EDY86920.1| exonuclease, RNase T and DNA polymerase III [gamma proteobacterium
HTCC5015]
Length = 238
Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 63/195 (32%), Gaps = 42/195 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-----AVFITGI 63
D ET G + D+ V D + A +L +P +V + GI
Sbjct: 54 DIETTGLNAERDKIVSIGLVEFDAS--------RVYLASAKHWLVNPGELSDSSVIVHGI 105
Query: 64 TPQKALRDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
T R ++A E R + S ++ Y + + R + + + +
Sbjct: 106 THSDVSRAPTIDAVIPELLRAMAGRLS-----VVHYRAMER--EFFRMLGFSLWSQPW-- 156
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQ----WPS--RDDGATSFKLQDLALANGIEHVNA 174
L V+ +A ++ W R+ S +L D L +
Sbjct: 157 ----------LFPVIDT-FALETTCLKQSQGWFDRFRNKSLPSLRLPDARLRYHLPEYEN 205
Query: 175 HDAKADVYATLALVW 189
HDA D AT L+
Sbjct: 206 HDALVDAIATAELLQ 220
>gi|262394233|ref|YP_003286087.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
gi|262337827|gb|ACY51622.1| DNA polymerase III alpha subunit (gram-positive type) [Vibrio sp.
Ex25]
Length = 205
Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 62/207 (29%), Gaps = 33/207 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT 61
T + +I D ET G A +F + + ++ C D A I
Sbjct: 6 TENAIIIDTETTGLG-ADAEIVEFTAICANSGEVIVDELVKPTCSIPAD------ATAIH 58
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
GIT + FS R + I YN+ FD ++ +Y
Sbjct: 59 GITNEDVKDAPDFHLMFSNRFLPLLNGRPIII--YNS-DFDTRLIIQSLDKHCNAAYVQ- 114
Query: 122 WDNGNSRWDLLDVMRA--IYAFSPDGI--QW-PSRDDGATSFKLQDLALANGIEHVN--- 173
S DL W +D +K Q L A +HV+
Sbjct: 115 -----SVHDLFFKFCVPQCAMLWYAEFYGVWNEYHED----YKWQSLTNACAQQHVDVSD 165
Query: 174 --AHDAKADVYATLALVWLIREKKPKL 198
AH A AD T LI K+
Sbjct: 166 LIAHRALADCEMT---RRLIHAVNSKI 189
>gi|322615086|gb|EFY12009.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322619925|gb|EFY16798.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322622237|gb|EFY19082.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627759|gb|EFY24549.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632896|gb|EFY29640.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322636613|gb|EFY33316.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322641194|gb|EFY37836.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322644871|gb|EFY41404.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322655865|gb|EFY52167.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660193|gb|EFY56432.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322665242|gb|EFY61430.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669499|gb|EFY65647.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322673425|gb|EFY69527.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322677353|gb|EFY73417.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322679984|gb|EFY76023.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322687456|gb|EFY83428.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323194090|gb|EFZ79289.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198572|gb|EFZ83673.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323202899|gb|EFZ87934.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323208618|gb|EFZ93556.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323211154|gb|EFZ96001.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323217595|gb|EGA02310.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323218944|gb|EGA03454.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227078|gb|EGA11258.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323229397|gb|EGA13520.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323236896|gb|EGA20968.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323240342|gb|EGA24386.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323242669|gb|EGA26690.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323250235|gb|EGA34126.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323252445|gb|EGA36292.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323256463|gb|EGA40196.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323261433|gb|EGA45016.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323267209|gb|EGA50694.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323272728|gb|EGA56133.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
Length = 215
Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + ++ F +P PEA+ GI P
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + I+ +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAGRASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFVT 148
>gi|182439793|ref|YP_001827512.1| DNA polymerase III subunit epsilon [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326780457|ref|ZP_08239722.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
griseus XylebKG-1]
gi|178468309|dbj|BAG22829.1| putative DNA polymerase III epsilon subunit [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326660790|gb|EGE45636.1| Exonuclease RNase T and DNA polymerase III [Streptomyces cf.
griseus XylebKG-1]
Length = 241
Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A V D V P A + G+T
Sbjct: 12 FDTETTGVDVEQDRIVSAALVAQDTAG---GRVRVTRWLVNPGVPVPPGATEVHGLTDDH 68
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
R+G A I + + +C G
Sbjct: 69 LQRNGRWPAPVMDEIARALAE--SCATG 94
>gi|317011686|gb|ADU85433.1| DNA polymerase III subunit epsilon [Helicobacter pylori
SouthAfrica7]
Length = 287
Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V + I E K DY+ D +TGI
Sbjct: 73 FSFIDLETTGSCPIKHEILEIGAVQVSGG-KIINRFETLVKVKSVPDYISD-----LTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L V E + + F N+ + +N FD + F +
Sbjct: 127 AYEDTLNAPSV-YEALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSRRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|290960166|ref|YP_003491348.1| oligoribonuclease [Streptomyces scabiei 87.22]
gi|260649692|emb|CBG72807.1| oligoribonuclease [Streptomyces scabiei 87.22]
Length = 200
Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
M + V D E G ++ D + A + D + + +P D L
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGDGVDIVIRPPDAAL 52
>gi|302545204|ref|ZP_07297546.1| oligoribonuclease [Streptomyces hygroscopicus ATCC 53653]
gi|302462822|gb|EFL25915.1| oligoribonuclease [Streptomyces himastatinicus ATCC 53653]
Length = 202
Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
M + V D E G ++ D + A + D + + +P
Sbjct: 1 MNDRMVWIDCEMTGLSLSDDALIEVAALVTDSELNILGDGVDIVVRPP 48
>gi|289423924|ref|ZP_06425717.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
gi|289155701|gb|EFD04373.1| DNA polymerase III PolC-type [Peptostreptococcus anaerobius 653-L]
Length = 188
Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ N + + D ET G + + + VRV E ++ +P EA +
Sbjct: 23 LKNDYTVIDIETSGLNPEKNEILELGAVRVRDNIVVAEYEQLI--RPRKSI--SKEATKV 78
Query: 61 TGITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
G+T + + + VE +F + + +IG+N I FD + RN
Sbjct: 79 NGLTKRMLIDEPFVEDVIWDFKDFLGKD------VLIGHN-IEFDLEFIRNQL 124
>gi|255324551|ref|ZP_05365668.1| DNA polymerase III subunit epsilon [Corynebacterium
tuberculostearicum SK141]
gi|255298457|gb|EET77757.1| DNA polymerase III subunit epsilon [Corynebacterium
tuberculostearicum SK141]
Length = 223
Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDY-LPDPEAVFITGITP 65
+D ET + R A VR+D R +K+E +P EA + GIT
Sbjct: 11 FDLETTSANPKEARIVTSALVRIDGRDVQKVEHLA------DPGIEIPQ-EATNVHGITT 63
Query: 66 QKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+KA +G E I + T I+ YN FD R++
Sbjct: 64 EKARAEGRPHEEVLKDTVEAIKAAWEDGLTLIV-YNA-AFDLTVLRSL 109
>gi|228922317|ref|ZP_04085624.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837372|gb|EEM82706.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 318
Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 50/253 (19%), Positives = 91/253 (35%), Gaps = 66/253 (26%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 117 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 158
Query: 179 ADVYATLA-----LVWLIREKKPK----------LFEYLYDY--RNKNQLRKL------- 214
D T A + E++ K ++E + + RNK + L
Sbjct: 159 DDCI-TCAAVYQKCAAIEEERQRKVNKVSLDEIVVYEAVKEMLARNKRNVEWLRCMNVGS 217
Query: 215 -IDIQNMTPLVHV 226
+DI+ P++ V
Sbjct: 218 YLDIKAFYPVMRV 230
>gi|168492961|ref|ZP_02717104.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC3059-06]
gi|183577104|gb|EDT97632.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC3059-06]
Length = 816
Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V N + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVENGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|291557306|emb|CBL34423.1| CRISPR-associated protein Cas2, E. coli subfamily [Eubacterium
siraeum V10Sc8a]
Length = 268
Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF- 59
+++ + + D ET G + D + V V+ + T K PEA+
Sbjct: 101 VSDTYTVIDIETTGLNPD-DEIIELGAVTVENG--SVAETYSVLVKTDKKI---PEAIIR 154
Query: 60 ITGITPQKALRDGVVE----AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+TGIT + +G + +EF+ R + P ++G+N I FD + ++ N
Sbjct: 155 LTGITEELLASEGTDKSKALSEFAMRCNG---KP---LVGHN-IGFDLNFIKSACAENKI 207
Query: 116 D 116
D
Sbjct: 208 D 208
>gi|238757732|ref|ZP_04618915.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
gi|238703975|gb|EEP96509.1| Ribonuclease T [Yersinia aldovae ATCC 35236]
Length = 226
Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 58/197 (29%), Gaps = 39/197 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V + W + T F P + +PEA+ GI P
Sbjct: 34 DVETAGFNAKTDALLEIAAVTLQMNKDGWLLPDETLHFHVDPFEGANLEPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEHDALHAIFKAVRKGLKEQGCNRAIIVAHNANFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + L ++ + + G + A
Sbjct: 154 FHPFATF-----DTAALSGLVLGQTVLAKACLT-----AGIP------------FDSSQA 191
Query: 175 HDAKADVYATLALVWLI 191
H A D T+ L
Sbjct: 192 HSALYD---TMQTAKLF 205
>gi|229151805|ref|ZP_04280004.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
gi|228631618|gb|EEK88248.1| DNA polymerase III alpha subunit [Bacillus cereus m1550]
Length = 318
Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats.
Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H V + N FD + ++
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLHANVIVAH-------NASFDMRFLKSNVNMLGLP-- 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 117 ----EPKNKVIDTVFLAKKYMKQAPNH-------------KLETLKRMLGIRLSS-HNAF 158
Query: 179 ADVYA 183
D
Sbjct: 159 DDCIT 163
>gi|170768829|ref|ZP_02903282.1| ribonuclease T [Escherichia albertii TW07627]
gi|170122377|gb|EDS91308.1| ribonuclease T [Escherichia albertii TW07627]
Length = 215
Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPERGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|195047081|ref|XP_001992268.1| GH24657 [Drosophila grimshawi]
gi|193893109|gb|EDV91975.1| GH24657 [Drosophila grimshawi]
Length = 999
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 288 VPVPIKEVHLNKCPILMPID--YCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY 345
P+P ++ + C L E D ++ E RQ T+L +
Sbjct: 339 APIPSRKRAYSICADLAAAQQMVHANSDTELSKFDREKTFETAEAYRQTTDLLAKVVTAL 398
Query: 346 NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
+ D LY G+ D +IL +
Sbjct: 399 ATVQPPPPEAEDPTLYGGYHGLSD----SQILASEW 430
>gi|328469916|gb|EGF40827.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 10329]
Length = 236
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-----PEAV 58
FV D+ET G D D+ V D + I+ + Y+ PE
Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVV--DLTLDGIDIASS-----KEWYICHGQFIKPETA 103
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCI 93
I G+TPQ L G+ E R+ + + CI
Sbjct: 104 QINGLTPQD-LAKGLPLDEGMNRLLERITGKVVLAHGCCI 142
>gi|326568596|gb|EGE18667.1| ribonuclease T [Moraxella catarrhalis BC7]
Length = 232
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 62/196 (31%), Gaps = 39/196 (19%)
Query: 9 DYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + A D + A + +D +P D +P A+ TGI P
Sbjct: 25 DVETAGFNAATDALLEIACVPILMDNDGNLYQGEPLNAHIEPFDGANLEPAALKFTGINP 84
Query: 66 QKALRDGVVEAE--FSRRIHQFFSV-------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
R + E E RRI + ++G+N FD +
Sbjct: 85 DSPFRKAISEDEKTALRRIFKALKALKKEHGCRQCILVGHNA-HFDLGFL--------NA 135
Query: 117 SYRWSWDNGNS---RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--H 171
+ + +S + +LD + + L + GIE +
Sbjct: 136 AIARTNSKNHSPFHTFSVLDTVSFAALTYGHTV-------------LAKTCMIAGIEFDN 182
Query: 172 VNAHDAKADVYATLAL 187
+AH A D T L
Sbjct: 183 QHAHSALYDAQKTAEL 198
>gi|297191229|ref|ZP_06908627.1| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
ATCC 25486]
gi|297150828|gb|EDY62400.2| DNA polymerase III subunit epsilon [Streptomyces pristinaespiralis
ATCC 25486]
Length = 259
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G D R A V + AD + P +A I GI+ +
Sbjct: 30 FDLETTGTDPLDARIVTAAVV----ELRA-GEPVRSHGWMADPGISIPAQASAIHGISNE 84
Query: 67 KALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+A +G E + I + ++ YN FD R+ S
Sbjct: 85 RASAEGRPAREVAEEIADTLTAHWRQGVPVVAYNA-AFDLTLLAAELQRHGLPSL 138
>gi|228959796|ref|ZP_04121471.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228799926|gb|EEM46868.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 318
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 117 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 158
Query: 179 ADVYA 183
D
Sbjct: 159 DDCIT 163
>gi|228966505|ref|ZP_04127558.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228793227|gb|EEM40777.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 315
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|229047293|ref|ZP_04192892.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
gi|228724035|gb|EEL75381.1| DNA polymerase III alpha subunit [Bacillus cereus AH676]
Length = 318
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 117 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 158
Query: 179 ADVYA 183
D
Sbjct: 159 DDCIT 163
>gi|229111034|ref|ZP_04240593.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
gi|228672397|gb|EEL27682.1| DNA polymerase III alpha subunit [Bacillus cereus Rock1-15]
Length = 318
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 117 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 158
Query: 179 ADVYA 183
D
Sbjct: 159 DDCIT 163
>gi|229080815|ref|ZP_04213333.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
gi|229191695|ref|ZP_04318674.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228591857|gb|EEK49697.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 10876]
gi|228702549|gb|EEL55017.1| DNA polymerase III alpha subunit [Bacillus cereus Rock4-2]
Length = 318
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 117 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 158
Query: 179 ADVYA 183
D
Sbjct: 159 DDCIT 163
>gi|223043083|ref|ZP_03613130.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus capitis SK14]
gi|222443294|gb|EEE49392.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus capitis SK14]
Length = 900
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 40/185 (21%), Positives = 63/185 (34%), Gaps = 27/185 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ I D ET G + D Q G+ R + I+ + D P +T I
Sbjct: 5 TYAIVDLETTGNQLDYDEIIQI-GITFVRNHKIID---TYHSMIRTDLEIPPFIQALTSI 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L E + I+ CI +NI FD + +N F
Sbjct: 61 E-EDMLAQAPYFNEVAEDIYDQIKD---CIFVAHNISFDLNFIKNAFNNCDI------QF 110
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D L++ + + P+ S++L +LA A+ I AH A D
Sbjct: 111 KPKKVMDTLELFKIAF---------PTDK----SYQLSELAQAHDIPLDKAHRADEDATT 157
Query: 184 TLALV 188
T L+
Sbjct: 158 TAKLM 162
>gi|218898703|ref|YP_002447114.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
G9842]
gi|218544955|gb|ACK97349.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
G9842]
Length = 315
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|218231342|ref|YP_002368423.1| DNA polymerase III subunit epsilon [Bacillus cereus B4264]
gi|229146178|ref|ZP_04274553.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296504117|ref|YP_003665817.1| DNA polymerase III subunit epsilon TlpA [Bacillus thuringiensis
BMB171]
gi|218159299|gb|ACK59291.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
B4264]
gi|228637237|gb|EEK93692.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-ST24]
gi|296325169|gb|ADH08097.1| DNA polymerase III subunit epsilon tlpA [Bacillus thuringiensis
BMB171]
Length = 315
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|206969177|ref|ZP_03230132.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|229071110|ref|ZP_04204336.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
gi|206736218|gb|EDZ53376.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus
AH1134]
gi|228712050|gb|EEL63999.1| DNA polymerase III alpha subunit [Bacillus cereus F65185]
Length = 315
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|75760700|ref|ZP_00740725.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902109|ref|ZP_04066273.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
gi|74491818|gb|EAO55009.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228857535|gb|EEN02031.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
Length = 318
Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 66 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 116
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 117 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 158
Query: 179 ADVYA 183
D
Sbjct: 159 DDCIT 163
>gi|326315522|ref|YP_004233194.1| peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372358|gb|ADX44627.1| Peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 574
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 324 CLE--NLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
CL+ N LLR+ R+ I ++ + + + ++ +R+++ +L P
Sbjct: 119 CLDPLNAFLLREHAAGRNNVLII-DEAQSLAPEVLEQLRLLTNLETSERKLLQIVLIGQP 177
Query: 382 EQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEHR 424
E L +D L +L R AR L+ +E + ++ HR
Sbjct: 178 E----LRAMVADPALEQLAQRVIARYHLDALTPEETRQYIAHR 216
>gi|317402939|gb|EFV83479.1| oligoribonuclease [Achromobacter xylosoxidans C54]
Length = 181
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 36/204 (17%), Positives = 62/204 (30%), Gaps = 46/204 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV---- 58
N V D E G D +R + A V + + V +D L +A+
Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQSDSLL---DAMDNWN 62
Query: 59 -FITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNI 109
G + K + EA+ + F + C N I D R +
Sbjct: 63 KSTHGKSGLIDKVRASTISEAQAEDTLLAFLAQHVPAGKSPLCG---NTISQDR---RFM 116
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
F + + N D+ + ++P + G
Sbjct: 117 F--AYMPRLEQFFHYRN--LDVSTLKELARRWAPGVYK--------------------GF 152
Query: 170 EHVNAHDAKADVYATLALVWLIRE 193
E + H+A AD+Y ++ + RE
Sbjct: 153 EKKSRHEALADIYESIDELKYYRE 176
>gi|259415529|ref|ZP_05739450.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
gi|259348759|gb|EEW60521.1| DNA polymerase III, epsilon subunit [Silicibacter sp. TrichCH4B]
Length = 473
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV++D ET G V D Q A RV + P +P P + I G+
Sbjct: 270 FVVFDTETTGLSVETDAIVQIAAQRVMNGRLVKGEVFDAYVNPGR-AIP-PASTRIHGV 326
>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 3_1_36A2]
gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type
[Fusobacterium sp. 3_1_36A2]
Length = 1449
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 420 EEFVVFDIETTGLNSHTNEIIEIGAVKIKA-----GRIVDRYSQLINPGRPIPYHITEIT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + I +F ++ +N FD + + + Y+ S
Sbjct: 475 SITDEQVA----NEPKIDEVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 531 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 571
Query: 182 YATLAL 187
AT +
Sbjct: 572 QATANM 577
>gi|161503473|ref|YP_001570585.1| ribonuclease T [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|204927787|ref|ZP_03218988.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205352852|ref|YP_002226653.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207857062|ref|YP_002243713.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|160864820|gb|ABX21443.1| hypothetical protein SARI_01547 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|204323129|gb|EDZ08325.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205272633|emb|CAR37543.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206708865|emb|CAR33195.1| Ribonuclease T [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326627923|gb|EGE34266.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 215
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + ++ F +P PEA+ GI P
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + I+ +N FD + R RN
Sbjct: 83 SNPLRGAVSEYEALHAIFKMVRKGIKESGCSRAIMVAHNATFDHSFMMAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFVT 148
>gi|109948241|ref|YP_665469.1| DNA polymerase III subunit epsilon [Helicobacter acinonychis str.
Sheeba]
gi|109715462|emb|CAK00470.1| DNA polymerase III [Helicobacter acinonychis str. Sheeba]
Length = 282
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V + I E K DY+ D +TGI
Sbjct: 68 FSFIDLETTGSCPLKHEILEIGAVQVSGG-KIINRFETLVKVKSVPDYISD-----LTGI 121
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L V E + + F N+ + +N FD + F +
Sbjct: 122 AYEDTLNAPSVH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 171
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 172 -------LLNLKLCTLDLSRRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 215
Query: 182 YATLAL 187
A+ L
Sbjct: 216 LASYKL 221
>gi|322805639|emb|CBZ03204.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
[Clostridium botulinum H04402 065]
Length = 322
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 43/150 (28%)
Query: 59 FITGITPQKALRDGVVE-------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
+ G + Q +G + EF + +T I+G+N + FD +
Sbjct: 12 LVHGFSDQFLKENGENKKVVLKDFLEFIK---------DTVIVGHN-VTFDTSILNSELE 61
Query: 112 RNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF---KLQDLALANG 168
R + + +D LD+ R Y S KL+ L+
Sbjct: 62 R-----LSLEKASFKTYYDTLDIARRFY----------------PSLTNHKLETLSKLFN 100
Query: 169 IEHVNAHDAKADVYAT--LALVWLIREKKP 196
E ++HDA D+ AT + + L + KP
Sbjct: 101 TETKSSHDAMDDILATKDVLMAMLKEKVKP 130
>gi|153832018|ref|ZP_01984685.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
gi|148872016|gb|EDL70839.1| DNA polymerase III subunit epsilon [Vibrio harveyi HY01]
Length = 249
Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 32/195 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
FV D+ET G + D V + + + C + ++ +P E+V
Sbjct: 59 FVSVDFETTGLNAEQDAILTIGLV----PF-TLGRVQ---CSGSRHWVVNPNRELNEESV 110
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI--RFDDYYSRNIFYRNFYD 116
I GIT + +E + I + ++ Y NI +F + N
Sbjct: 111 VIHGITDSEVKNAPQLE-QILDAILDELAGK-IVVVHYKNIERQFFNNALLNSLGEGIQF 168
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT--SFKLQDLALANGIEHVNA 174
D LD+ AI + W ++ G S +L +
Sbjct: 169 PV----------VDTLDIEYAI--QRRECEGWLNKLKGKKPGSVRLGHARERYHLPAYQP 216
Query: 175 HDAKADVYATLALVW 189
H A D AT L+
Sbjct: 217 HHALTDALATAELLQ 231
>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
Length = 1447
Score = 40.2 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGI 63
FVI+D ET G + +F + + +IE + FF KP P A+ ITGI
Sbjct: 389 FVIFDLETTGLSAFYNEIIEFGAIVLQNGI-EIEKHQ-FFIKPTGKI---PSAITKITGI 443
Query: 64 TPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSY 118
+ QK + + + E + +I + + ++ +N + F + + R ++ +
Sbjct: 444 S-QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 499
>gi|296420326|ref|XP_002839726.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635920|emb|CAZ83917.1| unnamed protein product [Tuber melanosporum]
Length = 188
Score = 40.2 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST 40
T V D E G D D Q D + ++
Sbjct: 7 TAPLVWIDCEMTGLDPNEDVILQICCYITDHELNLLDEE 45
>gi|228953879|ref|ZP_04115918.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228805847|gb|EEM52427.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 315
Score = 40.2 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
Length = 244
Score = 40.2 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE + +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFT 111
>gi|126664190|ref|ZP_01735182.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
gi|126623722|gb|EAZ94418.1| DNA polymerase III, epsilon subunit [Flavobacteria bacterium BAL38]
Length = 202
Score = 40.2 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V++D ET G D DR V ++ + F D E+V I GI
Sbjct: 34 YVVFDCETTGLDYKSDRILSIGAVAIENNQIIVGDFMEVF--LLQDVF-KAESVPIHGIL 90
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
++ + +VEAE R F T +G+ ++ FD R
Sbjct: 91 -KEGKEEKIVEAEAIIRFL-EFIKDATL-VGH-HVDFDIEMINQGLAR 134
>gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
Length = 243
Score = 40.2 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 14/73 (19%)
Query: 9 DYETFGRDVALD-----RPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFI 60
D ET G + R + V E I F D L DPEA +
Sbjct: 12 DTETTGMNQIGAHYEGHRIIEIGAV------EVINRRLTGNNFHVYLKPDRLVDPEAFMV 65
Query: 61 TGITPQKALRDGV 73
GI+ + + V
Sbjct: 66 HGISDEFLMNKPV 78
>gi|156551223|ref|XP_001602293.1| PREDICTED: similar to ENSANGP00000010833 [Nasonia vitripennis]
Length = 188
Score = 40.2 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 1 MTNH-----FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST 40
M+N+ V D E G V DR + A + D +
Sbjct: 1 MSNNQRRNRIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDE 45
>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
BAA-894]
gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC
BAA-894]
Length = 243
Score = 40.2 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 14/73 (19%)
Query: 9 DYETFGRDVALD-----RPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFI 60
D ET G + R + V E I F D L DPEA +
Sbjct: 12 DTETTGMNQIGAHYEGHRIIEIGAV------EVINRRLTGNNFHVYLKPDRLVDPEAFMV 65
Query: 61 TGITPQKALRDGV 73
GI+ + + V
Sbjct: 66 HGISDEFLMNKPV 78
>gi|296283564|ref|ZP_06861562.1| exonuclease, RNase T and DNA polymerase III [Citromicrobium
bathyomarinum JL354]
Length = 180
Score = 40.2 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 62/202 (30%), Gaps = 50/202 (24%)
Query: 9 DYETFGRDV-----------ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
D ET G A+DRP D+ +E + DP+A
Sbjct: 12 DVETSGPIPGEFSLLSIGACAVDRP--------DQHFECLLKPITDRA--------DPKA 55
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPN-----TCIIGYNNIRFDDYYSRNIFYR 112
+ ++G++ + G+ + R + +G+N FD + F+R
Sbjct: 56 LEVSGLSLEILQHTGLEPVQAMERFEIWVGQMAGETGTPIFVGFNA-PFDWSFVNYYFHR 114
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ G + D+ Y G W + S K++ G
Sbjct: 115 -----FLRRNPFGFTALDIK-----AYYMGSAGTSW----EATRSSKMR---KQLGAALE 157
Query: 173 NAHDAKADVYATLALVWLIREK 194
HD D A L L R K
Sbjct: 158 GDHDPLNDALAQAELFRLARTK 179
>gi|238926233|ref|ZP_04657993.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
gi|238885913|gb|EEQ49551.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
Length = 179
Score = 40.2 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 67/199 (33%), Gaps = 43/199 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV--FF--CKPADDYLPDPEAVFI 60
+++D ET G D A V T V + + A+ P+A I
Sbjct: 4 ILVFDTETTGFRSD-DEVLTLAVV------NGTGETMVDSMYAPVRKAEW----PDAERI 52
Query: 61 TGITPQKALR-DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
I+P D ++ + F+ P+T ++GYN I FD R
Sbjct: 53 NRISPAMVADCDPILTHR--EELECLFNAPDTLLVGYN-IEFDIRLLAQSGIRI------ 103
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL-ANGIEHV----NA 174
N N DVM A AF + P G ++ L A + A
Sbjct: 104 ---TNANRH----DVMLAFSAFR----KVPDARRGG--YRWWKLTECAEYYRYDWGTTVA 150
Query: 175 HDAKADVYATLALVWLIRE 193
H A AD ATL + E
Sbjct: 151 HGALADTLATLFCYRKMSE 169
>gi|302561385|ref|ZP_07313727.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
gi|302479003|gb|EFL42096.1| DNA polymerase III epsilon subunit [Streptomyces griseoflavus
Tu4000]
Length = 314
Score = 40.2 bits (93), Expect = 0.77, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 35/177 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T
Sbjct: 14 DVETTGL-ARDDRIISAAVYRLDAR-GEVEDHWYTTVNPERD----PGPVWIHGLTSDVL 67
Query: 69 LRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ V AEF+ R+ ++ +N + FD +
Sbjct: 68 EGAPLFKDVAAEFAARLE------GRVLVAHNAV-FDWQM------------IAREYARA 108
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + I A S + ++ P + KL+ LA G+ AH A D
Sbjct: 109 RGEAPVRQRLCTI-ALSKE-LKLPL-----PNHKLESLAAHFGVVQRRAHHALDDAR 158
>gi|254386412|ref|ZP_05001717.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
gi|194345262|gb|EDX26228.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
Length = 334
Score = 40.2 bits (93), Expect = 0.78, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 57/177 (32%), Gaps = 35/177 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D Q +E P D P V+I G+T
Sbjct: 35 DVETTGL-AREDRIVSAAVYRLDAQGN-VEDHWYTLVNPQRD----PGPVWIHGLTSDML 88
Query: 69 LRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ + EF+ R+ ++ +N I FD +
Sbjct: 89 QDAPLFKDIAGEFAGRLADR------VLVAHNAI-FDWQM------------IAREYARA 129
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + I A S + + P + KL+ LA G+ AH A D
Sbjct: 130 EETAPVRQRLCTI-ALSKE-LNLPL-----PNHKLESLAAHFGVVQQRAHHALDDAR 179
>gi|260902236|ref|ZP_05910631.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ4037]
gi|308110524|gb|EFO48064.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ4037]
Length = 236
Score = 40.2 bits (93), Expect = 0.78, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-----PEAV 58
FV D+ET G D D+ V D + I+ + Y+ PE
Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVV--DLTLDGIDIASS-----KEWYICHGQFIKPETA 103
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCI 93
I G+TPQ L G+ E R+ + + CI
Sbjct: 104 QINGLTPQD-LAKGLPLDEGMNRLLERITGKVVLAHGCCI 142
>gi|228928662|ref|ZP_04091698.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229123127|ref|ZP_04252334.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228660421|gb|EEL16054.1| DNA polymerase III alpha subunit [Bacillus cereus 95/8201]
gi|228830981|gb|EEM76582.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 315
Score = 40.2 bits (93), Expect = 0.78, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPKRPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|322376366|ref|ZP_08050859.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. M334]
gi|321282173|gb|EFX59180.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. M334]
Length = 816
Score = 40.2 bits (93), Expect = 0.79, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 39/207 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V + ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGKIVDRYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFD-DYYSRNIFYRNFYDS 117
TG+T + L ++ +R+I V N + +N ++FD + + N+F+ +
Sbjct: 57 KLTGLT-DRRLAQAPDFSQVARKIFDL--VENGIFVAHN-VQFDANLLAENLFFEGY--- 109
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
N +D + F P+ ++ L L GI +AH A
Sbjct: 110 ---ELRNPR-----VDTVELTQVFFPELEKYS----------LPILCRELGIPLKHAHTA 151
Query: 178 KADVYATLALVWLIREKKPKLFEYLYD 204
+D AT L+ +REK +L + L +
Sbjct: 152 LSDAQATAELLLFLREKMAQLPKELLE 178
>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
MC0-3]
Length = 244
Score = 40.2 bits (93), Expect = 0.79, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE + +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFT 111
>gi|237785970|ref|YP_002906675.1| oligoribonuclease [Corynebacterium kroppenstedtii DSM 44385]
gi|237758882|gb|ACR18132.1| putative oligoribonuclease [Corynebacterium kroppenstedtii DSM
44385]
Length = 222
Score = 40.2 bits (93), Expect = 0.80, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 8/110 (7%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI---- 60
V D E G D + + A + D ++ DD L +
Sbjct: 25 IVWIDCEMTGLDPSTHVLVEIAAIVTDANLNILDEGLDIVIHATDDELAKMDDFVTQMHT 84
Query: 61 -TGITPQKALRD---GVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
G+T + G E E + ++ + P T + N+I D +
Sbjct: 85 KNGLTDEIRKSTVSVGEAENEVLDYVKKWVNAPRTAPLAGNSIASDRKFI 134
>gi|229197718|ref|ZP_04324438.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
gi|228585795|gb|EEK43893.1| DNA polymerase III alpha subunit [Bacillus cereus m1293]
Length = 315
Score = 40.2 bits (93), Expect = 0.80, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|227536604|ref|ZP_03966653.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33300]
gi|227243681|gb|EEI93696.1| DNA polymerase III, epsilon subunit [Sphingobacterium spiritivorum
ATCC 33300]
Length = 469
Score = 40.2 bits (93), Expect = 0.80, Method: Composition-based stats.
Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 31/209 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD-YLPDPEAVFITGI 63
+ I D ET G A + A D + I+S + +P +TGI
Sbjct: 13 YAIVDIETTGGYAANSGITEIAIYLHDGH-QVIDSYQTL---INPHKEIPY-HIQMLTGI 67
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
TP+ E + + I+ F N + +N + FD F + + W
Sbjct: 68 TPEMLTDAPSFE-DVAADIYSFL--ENKVFVAHN-VNFD-----YSFIYAHLKACGYQWK 118
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ +R G +S+ L +L I + H A D A
Sbjct: 119 SPKLC-----TVRLARNIF----------KGFSSYSLGNLCQRLDIPISDRHRAAGDAKA 163
Query: 184 TLAL-VWLIREKKPKLFEYLYDYRNKNQL 211
T+ L ++ + L + K QL
Sbjct: 164 TVILFERILSQDTDGLIDSFLQTHAKEQL 192
>gi|319953942|ref|YP_004165209.1| exonuclease rnase t and DNA polymerase iii [Cellulophaga algicola
DSM 14237]
gi|319422602|gb|ADV49711.1| Exonuclease RNase T and DNA polymerase III [Cellulophaga algicola
DSM 14237]
Length = 258
Score = 40.2 bits (93), Expect = 0.81, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+T +D ET G +VA DR + A +++ + ++ + P + +PD E + +
Sbjct: 5 LTRPICFFDLETTGINVAKDRVVEIAILKIHPNGN--KESKTWLVNP-EMVIPD-EVIAV 60
Query: 61 TGITPQKALRDGVVEAEF---SRRIHQFFSVPNTCIIGYNNIRFD-----DYYSRN 108
GIT E F S+ I+ + + G+N+ RFD + R+
Sbjct: 61 HGIT----NEKVANEPTFKELSKDIYNMIKDSD--LGGFNSDRFDIPLLAEEMLRS 110
>gi|269795775|ref|YP_003315230.1| 5' exoribonuclease [Sanguibacter keddieii DSM 10542]
gi|269097960|gb|ACZ22396.1| oligoribonuclease (3'->5' exoribonuclease) [Sanguibacter keddieii
DSM 10542]
Length = 220
Score = 40.2 bits (93), Expect = 0.81, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ V D E G D+ D + A V D + + +P D+ L
Sbjct: 7 NDRIVWIDCEMTGLDLGADALVEVAAVVTDSELTVLGEGIDIIVRPPDEAL 57
>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
1054]
gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
HI2424]
gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
1054]
gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
HI2424]
Length = 244
Score = 40.2 bits (93), Expect = 0.81, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE + +I F I +N FD + F R +
Sbjct: 64 LSDKPKF-AEVAHQILDFVKDAELII---HNAPFDLGFLDAEFARLGLPPFT 111
>gi|303246654|ref|ZP_07332932.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
JJ]
gi|302491994|gb|EFL51872.1| DNA polymerase III, epsilon subunit [Desulfovibrio fructosovorans
JJ]
Length = 240
Score = 40.2 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 60/182 (32%), Gaps = 21/182 (11%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D E G D VR+ R + + +P+ D +P +A I G+
Sbjct: 43 FVVVDTELTGFDPRRHAMVAIGAVRL-RGLTLLPGESFFSLVRPSRD-VPR-DASLIHGL 99
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSYRW 120
T AL D AE F I+G++ ++ F + SR F
Sbjct: 100 T-DAALADAPETAETLAAFLDFLG--PAIIVGHHVELDMAFINAASRRYFGGELAAP--- 153
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
D L + Y Q D F L L G+ AHDA D
Sbjct: 154 -------CIDTLRLA-LTYEEKRQMGQGGQGDFERLEFDLASLCRRYGLPPFAAHDALGD 205
Query: 181 VY 182
Y
Sbjct: 206 AY 207
>gi|281205101|gb|EFA79294.1| hypothetical protein PPL_07712 [Polysphondylium pallidum PN500]
Length = 1364
Score = 40.2 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 144 DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREK--------- 194
D + W + S KL LA I + + H A DV T+ ++ +
Sbjct: 1233 DNLDWAKKHYRFDSKKLLSLAAIYSISNPHPHRALFDVITTIKVIEKLYNDPINPISEIK 1292
Query: 195 -KPKLFEYLY----DYRNKNQLRKLIDIQNMTP 222
KP ++ YL + + ++L D P
Sbjct: 1293 PKPSMWSYLLLTHDSMKKDQRNKRLDDSDRPQP 1325
>gi|228916240|ref|ZP_04079810.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843438|gb|EEM88516.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 315
Score = 40.2 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM
43183]
gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM
43183]
Length = 605
Score = 40.2 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 38/192 (19%), Positives = 59/192 (30%), Gaps = 41/192 (21%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITG 62
FV+ D ET G A + V+V F D +P P +TG
Sbjct: 43 TFVVVDLETTGGSPADSAITEVGAVKVRG-----GERLGEFATLVDPGVPIPPFITALTG 97
Query: 63 ITPQKALRDGVVEA-------EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
IT Q+ + + + EF+R C++ +N FD + R + +
Sbjct: 98 IT-QQMVTNAPPMSAVLPAFLEFAR----------GCVLVAHNAPFDIGFLRAACTAHDH 146
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
W V+ + + KL LA H
Sbjct: 147 P------------WPAFPVVDTADLARR-----VLTREEVPNCKLATLARYFRTGTEPCH 189
Query: 176 DAKADVYATLAL 187
A AD AT+ +
Sbjct: 190 RALADARATVDV 201
>gi|238569519|ref|XP_002386676.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
gi|215439222|gb|EEB87606.1| hypothetical protein MPER_14994 [Moniliophthora perniciosa FA553]
Length = 172
Score = 40.2 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 15/142 (10%)
Query: 47 PADDYLP-DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
+ +P P A+ + GI + + + + ++ F + + + GYN +FD +
Sbjct: 13 LNPEGIPSHPMALQLHGIQDAELVAPLPTFSAHAEQLRSFLA--GSIMTGYNITKFDLAF 70
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
F+R +W +D + F P + G F L
Sbjct: 71 LTAEFHRCGI-----TWSPAGEGIGTIDTLALYRRFRPQEYK-----RGGKLFS-AYLHF 119
Query: 166 ANGIEHVNAHDAKADVYATLAL 187
G AH+A+AD + L L
Sbjct: 120 VGG-WQTQAHNAEADAFTALRL 140
>gi|118616866|ref|YP_905198.1| DNA polymerase [Mycobacterium ulcerans Agy99]
gi|118568976|gb|ABL03727.1| DNA polymerase [Mycobacterium ulcerans Agy99]
Length = 500
Score = 40.2 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 40/188 (21%), Positives = 60/188 (31%), Gaps = 29/188 (15%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F + D+ET G DR + V + + + + P D A GI
Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTLI-NPHRDV----GATERHGIR 152
Query: 65 PQKALRDGVVEAEFSRRIHQFFSV-PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
RD + F I + + +N + FD + R W
Sbjct: 153 ----ARDVLGAPAFEAIIPRLLRDLRGRVFVAHN-VNFDQRFLLAELRRAGV-PLDNPWL 206
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
G ++W R A S KL D A G+ +AH A AD A
Sbjct: 207 TGLCT-----------------MRWAGRLLPAASRKLPDCCDAAGVFLTDAHRALADARA 249
Query: 184 TLALVWLI 191
T +L+ +
Sbjct: 250 TASLLKYL 257
>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
Length = 241
Score = 40.2 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 55/179 (30%), Gaps = 31/179 (17%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + A DR + V + F+ P D +A+ + GIT
Sbjct: 7 DTETTGLNHATGDRLIEIGCVEL-VNRRLTGRHLHFYVNPERDI--HEDAIAVHGITLDF 63
Query: 68 ALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+F+ ++ F II +N FD + F R +R N
Sbjct: 64 LADK----PKFAEIVNDVRDFVQDAELII--HNAPFDLGFLDMEFQRLDLPPFRQHASN- 116
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF--KLQDLALANGIEHVNAHDAKADVY 182
++D +R P S L ++N H H A D
Sbjct: 117 -----VIDTLREARQMFPG---------KRNSLDALCDRLGVSN--SHRTLHGALLDAE 159
>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 1454
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 425 EEFVVFDIETTGLNSHTNEIIEIGAVKIKA-----GRIVDRYSQLINPGRPIPYHITEIT 479
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + I +F ++ +N FD + + + Y+ S
Sbjct: 480 SITDEQVA----NEPKIDEVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 535
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 536 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 576
Query: 182 YATLAL 187
AT +
Sbjct: 577 QATANM 582
>gi|149198226|ref|ZP_01875273.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
gi|149138828|gb|EDM27234.1| oligoribonuclease [Lentisphaera araneosa HTCC2155]
Length = 182
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N D E G D +R + A + D + + I+
Sbjct: 2 NKLFWIDMEMTGLDPDENRILEIAILITDHKLDIIDRFHAV 42
>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 1454
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 425 EEFVVFDIETTGLNSHTNEIIEIGAVKIKA-----GRIVDRYSQLINPGRPIPYHITEIT 479
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + I +F ++ +N FD + + + Y+ S
Sbjct: 480 SITDEQVA----NEPKIDEVIGKFVDFIGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 535
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 536 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 576
Query: 182 YATLAL 187
AT +
Sbjct: 577 QATANM 582
>gi|66822265|ref|XP_644487.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
gi|66822817|ref|XP_644763.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
gi|122057700|sp|Q556Y2|ORN_DICDI RecName: Full=Probable oligoribonuclease; AltName: Full=RNA
exonuclease 2 homolog
gi|60472610|gb|EAL70561.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
gi|60472946|gb|EAL70895.1| RNA exonuclease 2 [Dictyostelium discoideum AX4]
Length = 190
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D++ D + A V D + IE
Sbjct: 20 VWVDLEMTGLDISKDVILEMAIVITDAELNVIEK 53
>gi|307297299|ref|ZP_07577105.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916559|gb|EFN46941.1| DNA polymerase III, epsilon subunit [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 185
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 57/209 (27%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRV-------DRQWEKIESTEVFFCKPADDYL 52
M +++ D ET G DR + A + V + ++ + + V PA
Sbjct: 1 MKKIYLVIDTETTGSSPLEGDRILEIAAIPVYGNKILHNLSFQSLVNPLVMI--PAQ--- 55
Query: 53 PDPEAVFITGITPQKALRDGVVEAEFSR---RIHQFFSVPNTCIIGY---NNIRFDDYYS 106
ITGI D + E + R + I+G+ N++ F D S
Sbjct: 56 -------ITGI-HGLKNEDVLDEPTMAEVFPRFRNYVG--GATIVGHNIVNDMTFFDIAS 105
Query: 107 RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA 166
+ N+ D +D+ +++ P G++ +A
Sbjct: 106 KET----GILPLA------NNYIDTIDIAHEVFSEGPYGLK--------------SIAKR 141
Query: 167 NGIEHVNAHDAKADVYAT----LALVWLI 191
I V H A D T LAL +
Sbjct: 142 LRIRDVPTHRAMDDARVTAKVFLALARRL 170
>gi|257900260|ref|ZP_05679913.1| DNA polymerase subunit III [Enterococcus faecium Com15]
gi|257838172|gb|EEV63246.1| DNA polymerase subunit III [Enterococcus faecium Com15]
Length = 295
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 27/198 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V+ D+ET G Q ++ + E+I+ + + IT
Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFR--SNISKRITK 175
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D V F Q S + + +N FD + + ++ ++ +
Sbjct: 176 IT-GLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFD---LKFLLHQLNENNIELNQ 231
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + A + + + + K L L N N+HDA D
Sbjct: 232 R--IRVIDTLPL-----ARR----HFETPNHKLITLK-DYLNLDN-----NSHDALEDCL 274
Query: 183 ATLALVWLIREKKPKLFE 200
T + I+ + K+ +
Sbjct: 275 VTNKVYQYIKHENNKIVQ 292
>gi|226288880|gb|EEH44392.1| phosphoglucomutase [Paracoccidioides brasiliensis Pb18]
Length = 806
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
T+ V D E G D D+ Q D + +E
Sbjct: 7 TDPLVWIDCEMTGLDPRTDKIIQICCFITDSNLDLVE 43
>gi|196034235|ref|ZP_03101645.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228947225|ref|ZP_04109519.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|195993309|gb|EDX57267.1| putative DNA polymerase III, epsilon subunit [Bacillus cereus W]
gi|228812472|gb|EEM58799.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 315
Score = 40.2 bits (93), Expect = 0.84, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPKRPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|319403493|emb|CBI77072.1| DNA polymerase III epsilon chain [Bartonella rochalimae ATCC
BAA-1498]
Length = 235
Score = 40.2 bits (93), Expect = 0.86, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 58/181 (32%), Gaps = 31/181 (17%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+I+D ET G + DR + + + + P D +PD E V I G+T
Sbjct: 4 IIFDTETTGLNKESDRIIEIGCIEM-INRYLTGRRFHVYLNPQDVIIPD-EVVAIHGLTN 61
Query: 66 QKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
++ E +F + F T + +N FD + R
Sbjct: 62 ERLKD----EKKFDDIVDALLDFIDDATIVA--HNANFDIGFLNAELERVNKPLI----- 110
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADV 181
N ++ D L + R + P+ L L GI H H A D
Sbjct: 111 NSDNVIDTLSIARRRFPMGPNS--------------LDVLCKRFGIDNSHRVLHGALLDA 156
Query: 182 Y 182
Sbjct: 157 E 157
>gi|326427354|gb|EGD72924.1| oligoribonuclease [Salpingoeca sp. ATCC 50818]
Length = 238
Score = 39.8 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
V D E G DV+ +R + A + D +
Sbjct: 64 VWVDLEMSGLDVSRERILEMAMIITDADLNVV 95
>gi|317026983|ref|XP_003188586.1| RNA exonuclease Rex2 [Aspergillus niger CBS 513.88]
Length = 188
Score = 39.8 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
++ V D E G D D+ Q D +E
Sbjct: 7 SDPLVWIDCEMTGLDADTDQILQICCFITDANLNLLE 43
>gi|330446342|ref|ZP_08309994.1| exonuclease family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490533|dbj|GAA04491.1| exonuclease family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 249
Score = 39.8 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 56/197 (28%), Gaps = 36/197 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
FV D+ET G + D V + +CK + ++ P E+V
Sbjct: 59 FVALDFETTGLNANKDDIISVGLV----PFTI----HRIYCKQSQHWVVKPKSKLDEESV 110
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP---NTCIIGYNNI--RFDDYYSRNIFYRN 113
I GIT + RRI + ++ Y I +F D
Sbjct: 111 IIHGITHSDVQTAPDL-----RRILESVLDALAGKVVVVHYKAIERQFMDKALHVRLNEG 165
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT-SFKLQDLALANGIEHV 172
D L + I A G W S +L G+
Sbjct: 166 IQFPV----------VDTLAIEAQIQAQQNSGF-WARLKGKKPGSVRLGKCRSRYGLPTY 214
Query: 173 NAHDAKADVYATLALVW 189
H A D AT L+
Sbjct: 215 QPHHALTDALATAELLQ 231
>gi|295400147|ref|ZP_06810127.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
thermoglucosidasius C56-YS93]
gi|294977926|gb|EFG53524.1| Exonuclease RNase T and DNA polymerase III [Geobacillus
thermoglucosidasius C56-YS93]
Length = 245
Score = 39.8 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 74/224 (33%), Gaps = 52/224 (23%)
Query: 4 HFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F+I D ET G D A + R E+ C P P A+ TG
Sbjct: 63 TFMIIDMETTGFSPQHGDEILAMAAAKTVRG-AVKETYYTLVC-PEKAIPPHISAL--TG 118
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFS-----VPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
IT + +++ R+H+ + +IGY+ I D + + + ++
Sbjct: 119 ITAKD--------VQYAPRLHEALRSFLSFISGGVMIGYH-IGHDLAFLNHFLWTHYRTK 169
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-PSRDDGATSFKLQDLALANGIEHVNAHD 176
+ +D+ ++ + W P+ DD + GI H
Sbjct: 170 WAA------RFFDMQPIVEMVQRR------WFPTLDDALGHY---------GISCERRHT 208
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
A DV+A L+ L +N + L D+ +
Sbjct: 209 ADGDVWAMAE-----------LWAQLLAELKRNNIETLYDLYSA 241
>gi|319950676|ref|ZP_08024577.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
gi|319435659|gb|EFV90878.1| hypothetical protein ES5_13838 [Dietzia cinnamea P4]
Length = 547
Score = 39.8 bits (92), Expect = 0.88, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 61/187 (32%), Gaps = 31/187 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G D + VR+ ++++ F D LP + +TGI
Sbjct: 37 TFVVVDLETTGTRPGGDEITEIGAVRIRGG--EVQAELSTFVSI-DGVLPGHIS-RLTGI 92
Query: 64 TPQKAL---RDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
P+ + G V A F FS ++ +N RFD + R
Sbjct: 93 APEDLVGAPSLGEVMATFL-----EFSR-GAVLVAHNA-RFDLGFLR-----------AA 134
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ G+ D V A +L LA G H A D
Sbjct: 135 AAATGHRWPDPPSVCTLALARR------VLHRGETRGHRLGVLAAHLGATVEPNHRALQD 188
Query: 181 VYATLAL 187
AT+ +
Sbjct: 189 ARATVDV 195
>gi|88800079|ref|ZP_01115649.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
gi|88777205|gb|EAR08410.1| DNA polymerase III, epsilon subunit [Reinekea sp. MED297]
Length = 238
Score = 39.8 bits (92), Expect = 0.88, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 9 DYETFGRDVAL-DRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
D ET G + DR + V VDR+ ++ P D +PD E V + GI
Sbjct: 7 DTETTGLNPTKGDRIVEVGCVEMVDRKLT--GRHFHYYINPERD-IPD-EVVAVHGIDND 62
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
K +F + ++ + +N FD + F R +
Sbjct: 63 KVKDS----PKFRDIAVELWTWLEGAELVIHNAAFDMGFLNAEFER-----FAQEQREP- 112
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDA------K 178
++ L+ + + D ++ + L L GI H H A
Sbjct: 113 --FEKLETVCGVL----DTLKVARDKHPGSKVSLDALCKRYGIDNSHRTLHGALLDSEIL 166
Query: 179 ADVYATL 185
ADVY L
Sbjct: 167 ADVYLML 173
>gi|46205666|ref|ZP_00048224.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
exonucleases [Magnetospirillum magnetotacticum MS-1]
Length = 187
Score = 39.8 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DV +DR A V + +T V EA I GIT A
Sbjct: 15 DTETTGLDVDVDRVVTAALV-----LREPGATHVRTWLLDPGVEIPAEATGIHGITNAHA 69
Query: 69 LRDGVVEAEFSRRIHQFF---SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G A I ++ YN FD R+ +
Sbjct: 70 TAHGSAPAVALDEIATLVVDAQRDGVPLVAYNA-AFDLAILDTELVRHGLPTLAA 123
>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 1216
Score = 39.8 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 29/186 (15%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FIT 61
FV++D ET G + + + V++ + + + P P + IT
Sbjct: 420 EEFVVFDIETTGLNSHTNEIIEIGAVKIKS-----GRIMDRYSQLINPGRPIPYHITEIT 474
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
IT ++ E + + I +F ++ +N FD + + + Y+ S
Sbjct: 475 SITDEQVA----NEPKIDKVIGKFVDFVGDAVLVAHNAPFDMGFIKRDIKKYLNIDYQCS 530
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
++D ++ PD ++ L DL G+ H A D
Sbjct: 531 ---------VIDTLQMARDLFPDLKKYG----------LGDLNKTLGLALEKHHRAVDDS 571
Query: 182 YATLAL 187
AT +
Sbjct: 572 QATANM 577
>gi|260577531|ref|ZP_05845471.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
43734]
gi|258604335|gb|EEW17572.1| DNA polymerase III, epsilon subunit [Corynebacterium jeikeium ATCC
43734]
Length = 214
Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 8 YDYETFGRDVALDRPAQFAGV----RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+D ET G D R A V R E + V + A D + GI
Sbjct: 4 FDLETTGVDPKTARIVTSALVTIKGRERNDIEMLADPGVEIPQQASD---------VHGI 54
Query: 64 TPQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYSR 107
T + A G E + I + T I+ YN +D R
Sbjct: 55 TTEYAREHGQDHGEVLAKTIEGIRAAWRSGATLIV-YNA-AYDLSVLR 100
>gi|315290558|gb|EFU49932.1| ribonuclease T [Escherichia coli MS 153-1]
Length = 215
Score = 39.8 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PSDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|254227511|ref|ZP_04920943.1| exonuclease family [Vibrio sp. Ex25]
gi|262396223|ref|YP_003288076.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
gi|151940123|gb|EDN58949.1| exonuclease family [Vibrio sp. Ex25]
gi|262339817|gb|ACY53611.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
Length = 236
Score = 39.8 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-----PEAV 58
FV D+ET G D D+ V D + I+ + Y+ PE
Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVV--DLTLDGIDIASS-----KEWYICHGQFIKPETA 103
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCI 93
I G+TPQ L G+ E R+ + + CI
Sbjct: 104 KINGLTPQD-LAKGLPLDEGMNRLLERITGKVVLAHGCCI 142
>gi|315604595|ref|ZP_07879658.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313607|gb|EFU61661.1| oligoribonuclease [Actinomyces sp. oral taxon 180 str. F0310]
Length = 213
Score = 39.8 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 26/119 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV------ 58
+ D E G DVA D + A V D ++ P D L P A
Sbjct: 11 LIWIDCEMTGLDVANDALIEVAVVVTDGDLSIVD--------PGMDVLITPPACALENMN 62
Query: 59 -----FIT--GITPQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYS 106
T G+ + R GV E + + I +F P ++ N++ D +
Sbjct: 63 DFVRNMHTSSGLL-TELARSGVSMEEATEQVLSYIKRFVPQPGKALLAGNSVGTDKMFL 120
>gi|300859054|ref|YP_003784037.1| hypothetical protein cpfrc_01637 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686508|gb|ADK29430.1| hypothetical protein cpfrc_01637 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206756|gb|ADL11098.1| Oligoribonuclease [Corynebacterium pseudotuberculosis C231]
gi|302331309|gb|ADL21503.1| Oligoribonuclease [Corynebacterium pseudotuberculosis 1002]
gi|308277000|gb|ADO26899.1| Oligoribonuclease [Corynebacterium pseudotuberculosis I19]
Length = 219
Score = 39.8 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D + A + D +
Sbjct: 18 NDRLVWIDLEMTGLDTHRHVIVEVAALITDADLNILGE 55
>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
7454]
gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
7454]
Length = 1010
Score = 39.8 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 42/197 (21%)
Query: 11 ETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
ET G D+ + V+V+ + ++ + E K + + V +TGIT
Sbjct: 2 ETTGLYKYSDKITEIGAVKVENGEITEVFNELVNPE----KMIPEKV-----VELTGITN 52
Query: 66 QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + I F + +G N FD + + D+ + ++
Sbjct: 53 EMVMDKPK-----IDEILPKFLEFSKDAYFVG-QNTDFDIGFIKEAC-----DNLSYQFE 101
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVNAH-DAKADV 181
D L + RA++ P G S KL H A DA
Sbjct: 102 P--VYLDTLPMARAVF---PSM--------GRFSLDKLAKKLAVGPFNHHRASDDAMTTA 148
Query: 182 YATLALVWLIREKKPKL 198
+ L I++K L
Sbjct: 149 KVFIKLFEKIKDKNKDL 165
>gi|323462912|pdb|3NH0|A Chain A, Crystal Structure Of Rnase T In Complex With A
Non-Preferred Ssdna (Aac)
gi|323462913|pdb|3NH0|B Chain B, Crystal Structure Of Rnase T In Complex With A
Non-Preferred Ssdna (Aac)
gi|323462916|pdb|3NH1|A Chain A, Crystal Structure Of Rnase T In Complex With A Preferred
Ssdna (Tagg) With Two Mg In The Active Site
gi|323462917|pdb|3NH1|B Chain B, Crystal Structure Of Rnase T In Complex With A Preferred
Ssdna (Tagg) With Two Mg In The Active Site
gi|323462918|pdb|3NH1|C Chain C, Crystal Structure Of Rnase T In Complex With A Preferred
Ssdna (Tagg) With Two Mg In The Active Site
gi|323462919|pdb|3NH1|D Chain D, Crystal Structure Of Rnase T In Complex With A Preferred
Ssdna (Tagg) With Two Mg In The Active Site
gi|323462924|pdb|3NH2|A Chain A, Crystal Structure Of Rnase T In Complex With A Stem Dna
With A 3' Overhang
gi|323462925|pdb|3NH2|B Chain B, Crystal Structure Of Rnase T In Complex With A Stem Dna
With A 3' Overhang
gi|323462928|pdb|3NH2|E Chain E, Crystal Structure Of Rnase T In Complex With A Stem Dna
With A 3' Overhang
gi|323462929|pdb|3NH2|F Chain F, Crystal Structure Of Rnase T In Complex With A Stem Dna
With A 3' Overhang
Length = 235
Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 43 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 101
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 102 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 161
Query: 114 FYDSYRW 120
+ +
Sbjct: 162 PFHPFAT 168
>gi|326795802|ref|YP_004313622.1| oligoribonuclease [Marinomonas mediterranea MMB-1]
gi|326546566|gb|ADZ91786.1| Oligoribonuclease [Marinomonas mediterranea MMB-1]
Length = 182
Score = 39.8 bits (92), Expect = 0.95, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
+ V D E G D ++ + A + D+ +
Sbjct: 6 ENLVWIDLEMTGLDPEMNTIIEIATIVTDKHLNVL 40
>gi|319764450|ref|YP_004128387.1| exonuclease rnase t and DNA polymerase iii [Alicycliphilus
denitrificans BC]
gi|330826666|ref|YP_004389969.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
denitrificans K601]
gi|317119011|gb|ADV01500.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
denitrificans BC]
gi|329312038|gb|AEB86453.1| Exonuclease RNase T and DNA polymerase III [Alicycliphilus
denitrificans K601]
Length = 221
Score = 39.8 bits (92), Expect = 0.95, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 60/187 (32%), Gaps = 19/187 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G + D VR+ + +P +V I + ++
Sbjct: 46 DCETTGLNPRTDEIVSIGAVRIVGERILTSERLELLVRPEKGV--SAGSVRIHRLR-ERD 102
Query: 69 LRDGVVEAEFSRR-IHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
L G+ E RR +H S P ++GY + FD +
Sbjct: 103 LAGGIPRDEAMRRLMHFIGSRP---LVGY-YLEFDVAMLGRAIW-----PLLGMGLPQRK 153
Query: 128 RWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD-VYATL 185
++V Y + + + + + + L + AHDA D V A +
Sbjct: 154 ----IEVSALYYDYKFRQLPPYQQQANADIDLRFSTLMRDLQLPEREAHDALNDAVMAAM 209
Query: 186 ALVWLIR 192
A + L R
Sbjct: 210 AFIKLRR 216
>gi|332306364|ref|YP_004434215.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 235
Score = 39.8 bits (92), Expect = 0.96, Method: Composition-based stats.
Identities = 42/192 (21%), Positives = 64/192 (33%), Gaps = 43/192 (22%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFITGIT 64
D ET G D R + V E + F L + EA+ + GIT
Sbjct: 7 DTETTGIDPRQGHRIIEIGCV------ELVNRRLTGNTFHVYINPQRLIEQEAIEVHGIT 60
Query: 65 PQKALRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ L V + A+F++ I N + +N FD + + F R
Sbjct: 61 NEYLLDKPVFADIAADFAQFI-------NGAQLVIHNAPFDVGFMDHEFDR-VASMVGKK 112
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDA-- 177
+ + D L++ R I+ P + + L L GI H H A
Sbjct: 113 TADMCTVLDTLEMARQIH---------PGQKNN-----LDALCKRYGIDNSHRELHGALL 158
Query: 178 ----KADVYATL 185
ADVY +
Sbjct: 159 DSEILADVYLMM 170
>gi|153829717|ref|ZP_01982384.1| Gp39 [Vibrio cholerae 623-39]
gi|148874796|gb|EDL72931.1| Gp39 [Vibrio cholerae 623-39]
Length = 192
Score = 39.8 bits (92), Expect = 0.96, Method: Composition-based stats.
Identities = 45/215 (20%), Positives = 64/215 (29%), Gaps = 49/215 (22%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAVFI 60
+ I D ET G D + + + + E+ + ++P EA I
Sbjct: 7 ENAFILDTETTGLD-SKSQIVEVTAICAKSG-------ELIYSSLVRPQGFIPA-EATRI 57
Query: 61 TGITPQKALRDGVVEAEFSRRIHQF-FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GIT D F I+ ++ N I YN FD + RN
Sbjct: 58 HGIT----NSDVADAPTFLDIIYPLSLALRNRTGIIYNA-DFDSRMFIQSYERNLQI--- 109
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQ-----------WPSRDDGATSFKLQDLALANG 168
S DL A +A + W D ++ Q L A
Sbjct: 110 -------SHLDLRS---AYFALKHKLLNSQCAMNWYAQFWGEFDTTNGGYRWQRLTNACQ 159
Query: 169 -----IEHVNAHDAKADVYATLALVWLIREKKPKL 198
I + AH A AD T LI +L
Sbjct: 160 QQGIDISDLTAHRALADCEMT---RRLINAVNGQL 191
>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 1010
Score = 39.8 bits (92), Expect = 0.97, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 60/200 (30%), Gaps = 48/200 (24%)
Query: 11 ETFGRDVALDRPAQFAGVRVDRQ-----WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
ET G D+ + V+V+ + ++ + E K + + V +TGIT
Sbjct: 2 ETTGLYKYSDKITEIGAVKVENGEITEVFNELVNPE----KMIPEKV-----VELTGITN 52
Query: 66 QKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNN---IRFDDYYSRNIFYRNFYDSYRW 120
+ + I F + +G N I F N+ Y+ ++
Sbjct: 53 EMVMDKPK-----IDEILPKFLEFSKDAYFVGQNTDFDIGFVKEACDNLSYQ--FEPIY- 104
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF-KLQDLALANGIEHVNAH-DAK 178
LD + A P G S KL H A DA
Sbjct: 105 -----------LDTLPMARAVFPSM--------GRFSLDKLAKKLAVGPFNHHRASDDAM 145
Query: 179 ADVYATLALVWLIREKKPKL 198
+ L I++K L
Sbjct: 146 TTAKVFIKLFEKIKDKNKDL 165
>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC
23685]
gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC
23685]
Length = 243
Score = 39.8 bits (92), Expect = 0.97, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 28/86 (32%), Gaps = 20/86 (23%)
Query: 9 DYETFGRDVALD-----RPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFI 60
D ET G + R + V E I F D L DPEA +
Sbjct: 12 DTETTGMNQVGAHYEGHRIIEIGAV------EVINRRLTGRNFHVYLKPDRLVDPEAFMV 65
Query: 61 TGITPQKAL-----RDGVVEA-EFSR 80
GI+ L D V E EF R
Sbjct: 66 HGISDDFLLGQPSFADVVDEFLEFIR 91
>gi|224476576|ref|YP_002634182.1| hypothetical protein Sca_1089 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421183|emb|CAL27997.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 895
Score = 39.8 bits (92), Expect = 0.97, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 27/186 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ + D ET G D Q G+ + +E + S D +P P +T
Sbjct: 4 TTYAVVDLETTGNQKDYDDIIQI-GITFVKGFEIVGSYHSLI--KTDLEIP-PFIQALTS 59
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I Q + E + I++ + + +N + FD + + F
Sbjct: 60 IEDQMLTQAPYF-NEVAEEIYELMKD--SVFVAHN-VAFDLTFLKKAF------------ 103
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N + V+ + F I +P+ S++L +LA + I NAH A D
Sbjct: 104 KKSNITYQPRKVIDTVELFK---IAFPTDK----SYQLSELAEYHDIPLENAHRADEDAA 156
Query: 183 ATLALV 188
T L+
Sbjct: 157 TTAKLM 162
>gi|153838933|ref|ZP_01991600.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
gi|149747604|gb|EDM58532.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
Length = 236
Score = 39.8 bits (92), Expect = 0.98, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-----PEAV 58
FV D+ET G D D+ V D + I+ + Y+ PE
Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVV--DLTLDGIDIASS-----KEWYICHGQFIKPETA 103
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCI 93
I G+TPQ L G+ E R+ + + CI
Sbjct: 104 KINGLTPQD-LAKGLPLDEGMNRLLERITGKVVLAHGCCI 142
>gi|319948005|ref|ZP_08022182.1| oligoribonuclease [Dietzia cinnamea P4]
gi|319438351|gb|EFV93294.1| oligoribonuclease [Dietzia cinnamea P4]
Length = 222
Score = 39.8 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D D+ + A + D +
Sbjct: 24 NDRIVWIDCEMTGLDTTNDKLVEIAALVTDSDLNVLGE 61
>gi|295103993|emb|CBL01537.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Faecalibacterium prausnitzii SL3/3]
Length = 330
Score = 39.8 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 40/211 (18%), Positives = 69/211 (32%), Gaps = 48/211 (22%)
Query: 1 MTNHFVIYDYE--------TFGRD----VALDRPAQFAGVRVDRQWEKIESTEV-----F 43
M + V++D E TF + V++D +++ +
Sbjct: 1 MPRNLVLFDLEWNIGYQPYTFNYHGVQQTLRGEIVEIGAVKIDEDANVLDTFSIHLRPRI 60
Query: 44 FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103
F K +TG+T Q L G + RR Q+ P+ + DD
Sbjct: 61 FRKLQHHI------AKVTGLT-QADLDKGEPIVQGLRRFMQW-CGPDAEFAEWG---LDD 109
Query: 104 -YYS-RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
+N+F N +S W +DL V + P ++ + L+
Sbjct: 110 VPVLKQNLFLCNLDESRPTVW------YDLQQVFLREH---------PRKEGEGMT--LE 152
Query: 162 DLALANGIEHVN-AHDAKADVYATLALVWLI 191
+ GI HDA +D T + L+
Sbjct: 153 SVVTRMGIPMERPFHDALSDTLYTADVCRLL 183
>gi|241668417|ref|ZP_04755995.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 230
Score = 39.8 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 6 VIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D ET G D + R +F V V + + F+C P + + A+ + G+T
Sbjct: 5 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRKVTGNNLHFYCNPNYEV--EAGALAVHGLT 61
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+ E + I F II +N FD +
Sbjct: 62 NEFLADKPSFEENVDQMI--DFLRGAEIII--HNAAFDVPFI 99
>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
Length = 244
Score = 39.8 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARTGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+F+ HQ + +N FD + F +
Sbjct: 64 LSDK----PKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPF 110
>gi|171684891|ref|XP_001907387.1| hypothetical protein [Podospora anserina S mat+]
gi|170942406|emb|CAP68058.1| unnamed protein product [Podospora anserina S mat+]
Length = 641
Score = 39.8 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 65/179 (36%), Gaps = 29/179 (16%)
Query: 273 LAKRLFTSHD--ELKGLVPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTL 330
L K ++ D L+ ++ + K H P L R GID +
Sbjct: 356 LRKNPYSGRDWTPLQTVLRILSKTAHGLSVPSLTQAMVI----LLRLGID--------NI 403
Query: 331 LRQQTNLRDRFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLP 390
+R + F+ + + V + ++ F DV + A L+ +LP
Sbjct: 404 VRDDPGVAQDFQDCLPRIVRA----VPREAWNNFCGDVTDSLYSHTHSPALRSLAISSLP 459
Query: 391 FSDRRLPELFFRY----------RARNFP-HTLSEKEKQDWLEHRKKMLTRSRIEEYKN 438
F+ RL EL R RAR+ P T S + D LEH + + +E+ N
Sbjct: 460 FTHPRLNELRRRLALTFLFNEPQRARSRPEETFSIQSVLDLLEHSEHFIIDRHSKEFYN 518
>gi|18310648|ref|NP_562582.1| hypothetical protein CPE1666 [Clostridium perfringens str. 13]
gi|110800096|ref|YP_696353.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens ATCC 13124]
gi|168211446|ref|ZP_02637071.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens B str. ATCC 3626]
gi|168214501|ref|ZP_02640126.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens CPE str. F4969]
gi|168216953|ref|ZP_02642578.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens NCTC 8239]
gi|182626374|ref|ZP_02954128.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens D str. JGS1721]
gi|18145329|dbj|BAB81372.1| hypothetical protein [Clostridium perfringens str. 13]
gi|110674743|gb|ABG83730.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens ATCC 13124]
gi|170710592|gb|EDT22774.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens B str. ATCC 3626]
gi|170714024|gb|EDT26206.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens CPE str. F4969]
gi|177908325|gb|EDT70873.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens D str. JGS1721]
gi|182380871|gb|EDT78350.1| putative DNA polymerase III, epsilon subunit [Clostridium
perfringens NCTC 8239]
Length = 204
Score = 39.8 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 33/195 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFIT 61
+ +D ET G Q + + VD + I +FF D + +PEA I
Sbjct: 3 LLFFDTETTGVKPG--SICQLSYILVDTSTKPQKTIGK-NIFF---TVDEM-EPEAERIH 55
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
G + +K + E + ++ F IIG+N ++FD + ++ +
Sbjct: 56 GFSLEKLYE--LSEGMYFEDLYADFINDFLEADFIIGHN-VQFDIKFLKHELL--GLGEF 110
Query: 119 RWSWDNGNS---RWDLLDVMRAIYAFSPDG-IQWPSRDDGATSFKLQD--LAL-ANGI-- 169
+ + D+ P G + P ++ + D ++ AN
Sbjct: 111 FEPNNVFCTMKYYKDI------CKILRPTGDYKNPKLEEVIKHLNITDSEISETANKYFQ 164
Query: 170 EHVNAHDAKADVYAT 184
N HDA+ D AT
Sbjct: 165 GSGNYHDARFDTAAT 179
>gi|156974738|ref|YP_001445645.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
gi|156526332|gb|ABU71418.1| hypothetical protein VIBHAR_02456 [Vibrio harveyi ATCC BAA-1116]
Length = 249
Score = 39.8 bits (92), Expect = 1.00, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 28/193 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
FV D+ET G + D V + + + C + ++ +P E+V
Sbjct: 59 FVSVDFETTGLNAEQDAILTIGLV----PF-TLGRVQ---CSGSRHWVVNPNRELNEESV 110
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I GIT + +E + I + ++ Y +I F++N +
Sbjct: 111 VIHGITDSEVKNAPQLE-QILDAILDELAGK-IVVVHYKSIER-------QFFKNALLNS 161
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT--SFKLQDLALANGIEHVNAHD 176
D LD+ AI + W ++ G S +L + H
Sbjct: 162 LGEGIQF-PVVDTLDIEYAI--QRRECEGWLNKLKGKKPGSVRLGHARERYHLPSYQPHH 218
Query: 177 AKADVYATLALVW 189
A D AT L+
Sbjct: 219 ALTDALATAELLQ 231
>gi|145636089|ref|ZP_01791759.1| exodeoxyribonuclease I [Haemophilus influenzae PittHH]
gi|145270611|gb|EDK10544.1| exodeoxyribonuclease I [Haemophilus influenzae PittHH]
Length = 41
Score = 39.8 bits (92), Expect = 1.00, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 435 EYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
E++ LQ L E+ + K L+ +YEY
Sbjct: 7 EFEASLQRLVEEHSDNSEKLSLLQQVYEYG 36
>gi|117165151|emb|CAJ88707.1| putative NUP-1 [Streptomyces ambofaciens ATCC 23877]
Length = 1995
Score = 39.8 bits (92), Expect = 1.00, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 45/142 (31%), Gaps = 19/142 (13%)
Query: 302 ILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVDSQLY 361
+L R + L +Q L R + + QDV Q
Sbjct: 924 VLPAAHTLSLSEERRAHLSAFEEERRAALAEKQRQLAARLRRSQADEALTVEQDVSLQ-- 981
Query: 362 DGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWL 421
AD R ++ P +L+ + R+ EL RYR +E D L
Sbjct: 982 -ELLADA-RADLEHDR---PGELAAVRRNLD--RVEELLPRYR----------EEAADRL 1024
Query: 422 EHRKKMLTRSRIEEYKNKLQSL 443
R LT E + L++L
Sbjct: 1025 RARLAALTDVSAENRERILRNL 1046
>gi|145589827|ref|YP_001156424.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145048233|gb|ABP34860.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 466
Score = 39.8 bits (92), Expect = 1.00, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 57/201 (28%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADD------YLPDPE 56
D ET G DR + G++ A+D L +P+
Sbjct: 9 PDLAFVDIETTGSHFDRDRITEI-GIKT----------------LANDGIQVWERLINPQ 51
Query: 57 AVF------ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRN 108
+TGI+PQ + +G + ++ + + +N RFD + +
Sbjct: 52 TFIPQNIQRLTGISPQ--MVEGQPSFD---QVAKELKQELEGKIFVAHNA-RFDYGFIKA 105
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
F R D +L ++ P+ P + L + A+G
Sbjct: 106 SFKRVGIDFKPK----------VLCTVKLSRLLFPEQ---PRHN-------LDTIINAHG 145
Query: 169 IEHVNAHDAKADVYATLALVW 189
++ H A D L
Sbjct: 146 LQVSARHRALGDADLLLQFWR 166
>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 1417
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 35/183 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F ++D ET G D ++ + V V + E +E + F KP P+ +TGIT
Sbjct: 397 FCVFDTETTGLDPGVEYMTEIGAVIV-KNGEVVEEFDTF-VKPGKPI--TPKITELTGIT 452
Query: 65 PQK-ALRDGVVEAEFSRRIHQFFSVPN-TCIIGYNNIRFDDYYSRNIFYRNF--YDSYRW 120
+ A G EA + F ++G+N FD + R R+ +
Sbjct: 453 NEMVADAPGEKEA-----LEAFLKFAGDRILVGHNVHAFDMRFLRAAAKRSGIKLEPTY- 506
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+D + A P G ++K + + AH A D
Sbjct: 507 -----------IDTLTMAQAMYP----------GLHNYKQGTINKHLELPAYEAHRACED 545
Query: 181 VYA 183
A
Sbjct: 546 SAA 548
>gi|118619032|ref|YP_907364.1| oligoribonuclease [Mycobacterium ulcerans Agy99]
gi|166216272|sp|A0PU74|ORN_MYCUA RecName: Full=Oligoribonuclease
gi|118571142|gb|ABL05893.1| oligoribonuclease Orn [Mycobacterium ulcerans Agy99]
Length = 215
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M V D E G D+ D+ + A + D +
Sbjct: 1 MREELVWIDCEMTGLDLGPDKLIEIAALVTDADLNILGD 39
>gi|302758050|ref|XP_002962448.1| hypothetical protein SELMODRAFT_141141 [Selaginella
moellendorffii]
gi|300169309|gb|EFJ35911.1| hypothetical protein SELMODRAFT_141141 [Selaginella
moellendorffii]
Length = 236
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF 43
++ V D E G DV DR + A + D + + IE +
Sbjct: 56 VSRPLVWIDLEMTGLDVCKDRILEIACIITDGKLTKSIEGPNLV 99
>gi|302815434|ref|XP_002989398.1| hypothetical protein SELMODRAFT_229455 [Selaginella
moellendorffii]
gi|300142792|gb|EFJ09489.1| hypothetical protein SELMODRAFT_229455 [Selaginella
moellendorffii]
Length = 236
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF 43
++ V D E G DV DR + A + D + + IE +
Sbjct: 56 VSRPLVWIDLEMTGLDVCKDRILEIACIITDGKLTKSIEGPNLV 99
>gi|190574880|ref|YP_001972725.1| oligoribonuclease [Stenotrophomonas maltophilia K279a]
gi|190012802|emb|CAQ46431.1| putative oligoribonuclease [Stenotrophomonas maltophilia K279a]
Length = 190
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 8 NERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAE 45
>gi|257889197|ref|ZP_05668850.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
gi|257825269|gb|EEV52183.1| DNA polymerase III subunit epsilon [Enterococcus faecium 1,141,733]
Length = 295
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 27/198 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V+ D+ET G Q ++ + E+I+ + + IT
Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFR--SNISKRITK 175
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D V F Q S + + +N FD + + ++ ++ +
Sbjct: 176 IT-GLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFD---LKFLLHQLNENNIELNQ 231
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + A + + + + K L L N N+HDA D
Sbjct: 232 R--IRVIDTLPL-----ARR----HFETPNHKLITLK-DYLNLDN-----NSHDALEDCL 274
Query: 183 ATLALVWLIREKKPKLFE 200
T + I+ + K+ E
Sbjct: 275 VTNKVYQYIKHENNKIVE 292
>gi|320668677|gb|EFX35482.1| ribonuclease T [Escherichia coli O157:H7 str. LSU-61]
Length = 215
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + ++ F +P PEA+ GI P
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMPDITLHFHVEPFVGANLQPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRNF 114
R V E E I + S N I+ +N FD + R RN
Sbjct: 83 NDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFAT 148
>gi|294853583|ref|ZP_06794255.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
gi|294819238|gb|EFG36238.1| DNA polymerase III subunit epsilon [Brucella sp. NVSL 07-0026]
Length = 191
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G DR V+++ E + + P D P+A + G
Sbjct: 41 IVFDTETTGILP-YDRIITLGAVKIEGG-ELLTQSLYLIFDPRKD--SSPQAEAVHGFDN 96
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD----SYRWS 121
+ E + I ++FS + + +N +FD +Y + F + D +
Sbjct: 97 WMTRYQDLFH-ELAAPIRKWFSWADEVVA--HNAQFDMHYIQREFRKAEVDMLDQPVYCT 153
Query: 122 WDNGNSRW 129
D W
Sbjct: 154 MDGARRLW 161
>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
J-10-fl]
gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
Length = 278
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ +D ET G ++ R + A +R + +++ + DP+A I G+
Sbjct: 15 LIFFDVETTGLEIQAGHRICEVAMLRWEHG-QEVGRINTL---INPERELDPQAAQINGL 70
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
P + + + + S N I +N + FD+ + R Y +
Sbjct: 71 QPAELNNAPLFTDIAPQVV--QLSQ-NAVRIAHN-LPFDESFLNMELCRAGYPPFT 122
>gi|168463155|ref|ZP_02697086.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|195634173|gb|EDX52525.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
Length = 215
Score = 39.8 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFAGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + I+ +N FD + R RN
Sbjct: 82 PSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFVT 148
>gi|257454452|ref|ZP_05619714.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
gi|257448218|gb|EEV23199.1| ribonuclease T [Enhydrobacter aerosaccus SK60]
Length = 242
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 63/205 (30%), Gaps = 35/205 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRV---DRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + D +P + + A+ TGI P
Sbjct: 23 DVETAGFNPKTDALLEIACIPILMDDTGLFYPGEAVNAHIEPFEGANLEARALQFTGINP 82
Query: 66 QKALRDGVVEAE--FSRRIHQFFSV-------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+R + E E RRI ++ ++G+N FD + + R
Sbjct: 83 HSPMRKAIAEDEKTAIRRIFKYLKTVRQSTQCTKCILVGHNA-HFDLSFLNALIERTNSK 141
Query: 117 SYRWSWDNGNSRWDLLDVMRAIY---AFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ S + S D + + + + KL L +
Sbjct: 142 N--QSQFHQFSVLDTVTLSALAFGQTVLARAC-------------KLAGL----EFDGNE 182
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D T L I P L
Sbjct: 183 AHSALYDTQKTAELFCYILNNYPML 207
>gi|229162442|ref|ZP_04290403.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
gi|228620921|gb|EEK77786.1| DNA polymerase III alpha subunit [Bacillus cereus R309803]
Length = 315
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++ N
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKS----NVNMLG 111
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + A + KL+ L GI + H+A
Sbjct: 112 LLEPKNK-----VIDTVFLA----------KKYMKHAPNHKLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|229179896|ref|ZP_04307242.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
gi|228603577|gb|EEK61052.1| DNA polymerase III alpha subunit [Bacillus cereus 172560W]
Length = 315
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++ N
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKS----NVNMLG 111
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
N ++D + A + KL+ L GI + H+A
Sbjct: 112 LLEPKNK-----VIDTVFLA----------KKYMKHAPNHKLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|225435975|ref|XP_002271328.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|296083947|emb|CBI24335.3| unnamed protein product [Vitis vinifera]
Length = 245
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 43/201 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVFFCK-------PADDYLPDPE 56
V D E G +V +DR + A + D + +E ++ + +
Sbjct: 66 LVWIDLEMTGLNVEVDRILEIACIITDGNLIKSVEGPDLVIHQTKECLDNMGEWCQSHHS 125
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRN 113
A +G+T +K LR + E E +++ +F T ++ N++ D +F +
Sbjct: 126 A---SGLT-KKVLRSTISEQEAEKQVIEFVKRNVGTYTPLLAGNSVYMD-----FLFLKK 176
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQW-PSRDDGATSFKLQDLALANGIEHV 172
+ + + +L + +I A I+W P A S
Sbjct: 177 YMPDLASLFSH------VLVDVSSIKAL---CIRWYPRDSKKAPS-------------KE 214
Query: 173 NAHDAKADVYATLALVWLIRE 193
N H A D+ ++ + RE
Sbjct: 215 NKHRAMDDIRESIRELKYYRE 235
>gi|195503017|ref|XP_002098476.1| GE23924 [Drosophila yakuba]
gi|194184577|gb|EDW98188.1| GE23924 [Drosophila yakuba]
Length = 184
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 8/48 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFF 44
V D E G D+ D+ + + + D+ I + +
Sbjct: 11 IVWMDLEMTGLDIEKDKILEVSCIITDKDLNVKSEGPCFAINHPQEVY 58
>gi|30263558|ref|NP_845935.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Ames]
gi|47528957|ref|YP_020306.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186408|ref|YP_029660.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Sterne]
gi|65320888|ref|ZP_00393847.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
[Bacillus anthracis str. A2012]
gi|165871011|ref|ZP_02215662.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167636474|ref|ZP_02394772.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|167640607|ref|ZP_02398869.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|170688408|ref|ZP_02879616.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|170708125|ref|ZP_02898572.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|177652488|ref|ZP_02934955.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190565123|ref|ZP_03018044.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
Tsiankovskii-I]
gi|229603113|ref|YP_002867802.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0248]
gi|254686178|ref|ZP_05150037.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
CNEVA-9066]
gi|254726056|ref|ZP_05187838.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. A1055]
gi|254738651|ref|ZP_05196354.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Western
North America USA6153]
gi|254744791|ref|ZP_05202469.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Kruger
B]
gi|254752968|ref|ZP_05205004.1| DNA polymerase III subunit epsilon [Bacillus anthracis str. Vollum]
gi|254759240|ref|ZP_05211266.1| DNA polymerase III subunit epsilon [Bacillus anthracis str.
Australia 94]
gi|30258193|gb|AAP27421.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. Ames]
gi|47504105|gb|AAT32781.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49180335|gb|AAT55711.1| DNA polymerase III, epsilon subunit, putative [Bacillus anthracis
str. Sterne]
gi|164713222|gb|EDR18748.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0488]
gi|167511475|gb|EDR86859.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0193]
gi|167528133|gb|EDR90925.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0442]
gi|170126933|gb|EDS95813.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0389]
gi|170667578|gb|EDT18333.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0465]
gi|172082162|gb|EDT67229.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0174]
gi|190564440|gb|EDV18404.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
Tsiankovskii-I]
gi|229267521|gb|ACQ49158.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. A0248]
Length = 315
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPKRPIPDRI-----MSLT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|306819268|ref|ZP_07452979.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
gi|304648050|gb|EFM45364.1| oligoribonuclease [Mobiluncus mulieris ATCC 35239]
Length = 208
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-- 58
+T+ V D E G D+A D + + D +++ KP+ L +
Sbjct: 8 LTDALVWVDCEMTGLDLATDELIEIGVIVTDFDLNPLDTGIDLLIKPSQTALDNMGDFVR 67
Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQ 84
T L G+ E +R++ +
Sbjct: 68 EMHTKSGLLDELDHGLPVTEAARQVLE 94
>gi|302381472|ref|YP_003817295.1| DNA polymerase III subunit epsilon [Brevundimonas subvibrioides
ATCC 15264]
gi|302192100|gb|ADK99671.1| DNA polymerase III, epsilon subunit [Brevundimonas subvibrioides
ATCC 15264]
Length = 247
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D DR + + + T F + L +A+ + GIT K
Sbjct: 8 DTETTGFDPRTGDRLIEVGCIEI-LDLLPTGRTFHRFV--NPERLIPADAIRVHGITDDK 64
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+F++ + + +N +FD + + R +
Sbjct: 65 VKDA----PKFAQIVVDLMDFIGDAPVIAHNAQFDRNFIDHECGRCGHP 109
>gi|254457146|ref|ZP_05070574.1| exonuclease [Campylobacterales bacterium GD 1]
gi|207085938|gb|EDZ63222.1| exonuclease [Campylobacterales bacterium GD 1]
Length = 247
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 86/245 (35%), Gaps = 42/245 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +VI D ET G DR Q V + +E F+ + D A+ +
Sbjct: 1 MAKKYVILDTETTGVG-ENDRVIQLGYVV--LGAKDVEVHNEFY---SSDVPISFGAMEV 54
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
GITP + + +V +I +N FD
Sbjct: 55 HGITPDMLENKPACRDSVAYKRLCELNVSENYMI-IHNAPFDLGML-------------- 99
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL--------ALANGIEHV 172
+ N++ ++D +R PD F+ + A A G+ V
Sbjct: 100 EKEGFNTQMKVIDTLRVAKHILPD-----EDAHRLQYFRYKMALYKDEQKEADALGVV-V 153
Query: 173 NAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGA 232
AHDA DV L+ +RE + ++N + K++D+ N TP++ S FG
Sbjct: 154 KAHDAIGDVLVLKLLLTKLREAVSAAYP------SENPVEKMVDLTN-TPILVKSFRFGK 206
Query: 233 SRSNT 237
+ T
Sbjct: 207 YKGKT 211
>gi|119504386|ref|ZP_01626466.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
gi|119459894|gb|EAW40989.1| ribonuclease T [marine gamma proteobacterium HTCC2080]
Length = 216
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 48/210 (22%), Positives = 77/210 (36%), Gaps = 34/210 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAG--VRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITG 62
VI D ET G + A D + A + VD + E + T F +P + + A+ TG
Sbjct: 19 VIVDVETGGFNAATDALLEVAATLIHVDDRGEVVLGDTISFNVEPFEGANIEASALEFTG 78
Query: 63 ITPQKALRDGVVEA----EFSRRIHQFFSVPNT---CIIGYNNIRFDDYYSRNIFYRNFY 115
I P+ LR + EA + RI + ++G+N FD + + R
Sbjct: 79 IDPENPLRAALPEAIALGDLFTRIRKEVRDTGCNRAILVGHNA-HFDAGFINSASLRC-- 135
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN-- 173
+ + + S +D + + G T L GIE N
Sbjct: 136 -DIKRNPFHPFSHFDTATLAGLAF--------------GHTV--LAQACRRAGIEFNNSE 178
Query: 174 AHDAKADVYATLALVWLIREKKPKL--FEY 201
AH A D T L I + +L +++
Sbjct: 179 AHSAAYDATKTAELFCCIVNQWQRLGGWQW 208
>gi|283785135|ref|YP_003365000.1| ribonuclease T [Citrobacter rodentium ICC168]
gi|282948589|emb|CBG88180.1| ribonuclease T [Citrobacter rodentium ICC168]
Length = 214
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 55/191 (28%), Gaps = 38/191 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNARTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N I+ +N FD + R RN
Sbjct: 82 PNNPLRGAVSEYDALHAIFKMVRKGIKDNGCNRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S + DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACLAAGMEFDGT-----------------Q 179
Query: 174 AHDAKADVYAT 184
AH A D T
Sbjct: 180 AHSALYDTERT 190
>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
Length = 1469
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G + +F V + +IE + FF KP +P P ITGI+
Sbjct: 411 FVIFDLETTGLSAFYNEIIEFGAVVLQNGI-EIEKHQ-FFIKPT-GKIP-PAITKITGIS 466
Query: 65 PQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSY 118
QK + + + E + +I + + ++ +N + F + + R ++ +
Sbjct: 467 -QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 521
>gi|62180023|ref|YP_216440.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161614147|ref|YP_001588112.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|168819183|ref|ZP_02831183.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|198245565|ref|YP_002215700.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|81309702|sp|Q57PK2|RNT_SALCH RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|62127656|gb|AAX65359.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161363511|gb|ABX67279.1| hypothetical protein SPAB_01887 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197940081|gb|ACH77414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|205343777|gb|EDZ30541.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320086089|emb|CBY95863.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322714491|gb|EFZ06062.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|326623447|gb|EGE29792.1| ribonuclease T [Salmonella enterica subsp. enterica serovar Dublin
str. 3246]
Length = 215
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFAGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + I+ +N FD + R RN
Sbjct: 82 PSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFVT 148
>gi|228909419|ref|ZP_04073244.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
gi|228850196|gb|EEM95025.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 200]
Length = 318
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE 75
GIT + +E
Sbjct: 66 GITNYRVSDAPTIE 79
>gi|229128882|ref|ZP_04257858.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
gi|228654587|gb|EEL10449.1| DNA polymerase III alpha subunit [Bacillus cereus BDRD-Cer4]
Length = 318
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 13 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 65
Query: 62 GITPQKALRDGVVE 75
GIT + +E
Sbjct: 66 GITNYRVSDAPTIE 79
>gi|297203185|ref|ZP_06920582.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
gi|197717364|gb|EDY61398.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
Length = 240
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AVFIT 61
+D ET G D R A + + R + + E +L DP AV +
Sbjct: 11 FDLETTGTDPREARIVTAAVIEL-RDGQSLGRRE---------WLADPGMEIPADAVAVH 60
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFSV-PNTC--IIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI+ ++A +G + + I + T ++ YN FD R S
Sbjct: 61 GISNERAAAEGRPADQVADAIADVLTTYWKTGVPVVAYNA-AFDLSLLSAELRRYGLPSL 119
>gi|30021712|ref|NP_833343.1| DNA polymerase III subunit epsilon [Bacillus cereus ATCC 14579]
gi|29897267|gb|AAP10544.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
Length = 315
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPERPIPDRITS-----LT 62
Query: 62 GITPQKALRDGVVE 75
GIT + +E
Sbjct: 63 GITNYRVSDAPTIE 76
>gi|293365088|ref|ZP_06611805.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus oralis ATCC 35037]
gi|291316538|gb|EFE56974.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus oralis ATCC 35037]
Length = 830
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 49/224 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI 60
+ +V+ D E + + Q G+ V E I+ A D P P I
Sbjct: 6 NDRYVVVDLEATSTG-SKAKIIQV-GIVVIENGEIIDQY-------ATDVNPHEPLDSHI 56
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFY 115
TG+T Q+ EFS+ + F V + + +N ++FD + + +F+ +
Sbjct: 57 KELTGLTDQRLAVA----PEFSQVAGKIFELVKDGIFVAHN-VQFDANLLAEFLFFEGYE 111
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P + L L GIE +AH
Sbjct: 112 LRTPR-----------VDTVELAQVLYPQ----------FEKYNLGILCQELGIELEHAH 150
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
A +D AT L+ +R+K +L K L L+D+ +
Sbjct: 151 TALSDAQATAELLLYMRQKLFEL--------PKGLLESLLDLAD 186
>gi|254525014|ref|ZP_05137069.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
gi|219722605|gb|EED41130.1| oligoribonuclease [Stenotrophomonas sp. SKA14]
Length = 190
Score = 39.8 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 8 NERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAE 45
>gi|256370469|ref|YP_003107980.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
gi|256000632|gb|ACU49031.1| DNA polymerase III subunit epsilon [Brucella microti CCM 4915]
Length = 234
Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 28/196 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
++ L V F+ + +F + + +N FD + R
Sbjct: 62 EQLLDKPV----FAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEITSEH--- 114
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKADVYA 183
D L + R + P+ L L GIE H H A D
Sbjct: 115 --IVDTLALARRKHPMGPNS--------------LDALCKRYGIENSHRTLHGALLDAQI 158
Query: 184 TLAL-VWLIREKKPKL 198
+ + LI K+ L
Sbjct: 159 LAEVYIELIGGKQTAL 174
>gi|238749424|ref|ZP_04610929.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
gi|238712079|gb|EEQ04292.1| Ribonuclease T [Yersinia rohdei ATCC 43380]
Length = 226
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 45/126 (35%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGV--RVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A V R+D+ + + T F +P + PEA+ GI P
Sbjct: 34 DVETAGFNAQTDALLEIAAVTLRMDKDGWLLPDQTLHFHVEPFEGANLQPEALAFNGIDP 93
Query: 66 QKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E I N II +N FD + R RN
Sbjct: 94 TNPLRGAVSEYNALHAIFTAIRKGLKEQGCNRAIIVAHNAHFDHSFVMAAAERASLKRNP 153
Query: 115 YDSYRW 120
+ +
Sbjct: 154 FHPFAT 159
>gi|229014710|ref|ZP_04171818.1| exonuclease [Bacillus mycoides DSM 2048]
gi|228746575|gb|EEL96470.1| exonuclease [Bacillus mycoides DSM 2048]
Length = 181
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 44/193 (22%), Positives = 69/193 (35%), Gaps = 36/193 (18%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ FVI D ET G D+ + + + + + KP + +P EA I G
Sbjct: 23 DQFVILDTETTGL-TLRDQIIDISVI--NLSGKIL---LNSLVKPTIN-IPA-EAASIHG 74
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + G + + +V T +I YN FD N N +
Sbjct: 75 ITNE--MVHGAPSWTAIYKELREVTVGKTLLI-YNA-EFDLGMIENTCIANNV-----EF 125
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+N S + +YA D +W S L D E H A AD +
Sbjct: 126 NNFKS-----TCVMKMYADYVDSKRW-------IS--LSDAT-----ELTIKHRAAADCF 166
Query: 183 ATLALVWLIREKK 195
A L L+ ++ +
Sbjct: 167 AALELLQQLKNNQ 179
>gi|124268095|ref|YP_001022099.1| oligoribonuclease [Methylibium petroleiphilum PM1]
gi|124260870|gb|ABM95864.1| putative oligoribonuclease protein [Methylibium petroleiphilum
PM1]
Length = 191
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTE 41
+ + D E G D DR + A V D IE
Sbjct: 16 QNLIWIDLEMTGLDPLNDRIIEIAVVVTDPGLTVRIEGPV 55
>gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233]
gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM
44233]
Length = 613
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 41/197 (20%), Positives = 65/197 (32%), Gaps = 37/197 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
FV+ D ET G A + + V+V + + P+ +TGI
Sbjct: 48 TFVVVDLETTGGSPATEAITEIGAVKVRGG-QVLGEFATL---VDPGRTIPPQITMLTGI 103
Query: 64 TPQKALR----DGVVEA--EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
T V+ A EF+R + ++ +N RFD + R R
Sbjct: 104 TNAMVYDAPRISSVLPAFLEFAR---------GSVLVAHNA-RFDVGFLRAACARQQVP- 152
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
W ++D +R P A S +L LA G H A
Sbjct: 153 ----WPGPA----VVDTVRLARKVLPRA--------EAPSVRLSALAALLGARTRPDHRA 196
Query: 178 KADVYATLALVWLIREK 194
D AT+ ++ + E+
Sbjct: 197 LTDARATVDVLHALFER 213
>gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
Length = 247
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 55/178 (30%), Gaps = 27/178 (15%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I D ET G + DR + V + + F+ P D DP A+ + G+T
Sbjct: 4 LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERD--SDPGALAVHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ A+ + +I F II +N FD + F
Sbjct: 61 TEFLSDKPKF-ADIADQIRD-FIQGADLII--HNAPFDIGFLDAEFALLGLPPVST---- 112
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
+++D + P S L L GI H H A D
Sbjct: 113 --YCGEIIDTLARAKQMFPG---------KRNS--LDALCDRFGISNAHRTLHGALLD 157
>gi|332291057|ref|YP_004429666.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
4H-3-7-5]
gi|332169143|gb|AEE18398.1| DNA polymerase III, epsilon subunit [Krokinobacter diaphorus
4H-3-7-5]
Length = 458
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 76/221 (34%), Gaps = 31/221 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G + + A + D + ++ + V +TGI
Sbjct: 2 YAILDIETTGGKYNEEGITEIAIYKFDGH-QVVDQFITL---VNPERPIQAFVVGLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
L D E ++RI + CII +N +FD F R Y Y +
Sbjct: 58 -NGMLTDAPKFHEIAKRIIEITEG---CIIVAHNAQFDYRILSLEFDRLGY-PYERT--- 109
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
S + + G S+ L L GI N H A D AT
Sbjct: 110 ----------TLCSVELSQELLP------GHDSYSLGKLTKTLGIAMSNRHRADGDAIAT 153
Query: 185 LALVWLIREKKPK---LFEYLYDYRNKNQLRKLIDIQNMTP 222
+ L L+ EK P+ + + + + K+ KL D+ P
Sbjct: 154 VKLFKLLLEKDPEKTIITKAIRSFPKKHMDTKLKDLIRSVP 194
>gi|254718114|ref|ZP_05179925.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
gi|265983066|ref|ZP_06095801.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
gi|306839740|ref|ZP_07472542.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
gi|306842813|ref|ZP_07475453.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
gi|306843489|ref|ZP_07476090.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
gi|264661658|gb|EEZ31919.1| DNA polymerase III subunit epsilon [Brucella sp. 83/13]
gi|306276180|gb|EFM57880.1| DNA polymerase III, epsilon subunit [Brucella sp. BO1]
gi|306287007|gb|EFM58518.1| DNA polymerase III, epsilon subunit [Brucella sp. BO2]
gi|306405200|gb|EFM61477.1| DNA polymerase III, epsilon subunit [Brucella sp. NF 2653]
Length = 234
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 28/196 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 61
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
++ L V F+ + +F + + +N FD + R
Sbjct: 62 EQLLDKPV----FAEILDEFLEFIDGARLVAHNAMFDLGFINAELARLDQAEIASEH--- 114
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVYA 183
D L + R + P+ L L GI H H A D
Sbjct: 115 --IVDTLALARRKHPMGPNS--------------LDALCKRYGIDNSHRTLHGALLDAQI 158
Query: 184 TLAL-VWLIREKKPKL 198
+ + LI K+ L
Sbjct: 159 LAEVYIELIGGKQTAL 174
>gi|227813558|ref|YP_002813567.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. CDC 684]
gi|227004983|gb|ACP14726.1| putative DNA polymerase III, epsilon subunit [Bacillus anthracis
str. CDC 684]
Length = 315
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 40/185 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC---KPADDYLPDPEAVFIT 61
+V+ D+ET G + D+ Q A V+ R E ++ V + +P D + + +T
Sbjct: 10 YVVIDFETTGFNPYNDKIIQVAAVKY-RNHELVDQF-VSYVNPKRPIPDRI-----MSLT 62
Query: 62 GITPQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GIT + +E F +H T +I +N FD + ++
Sbjct: 63 GITNYRVSDAPTIEEVLPLFLAFLH-------TNVIVAHNASFDMRFLKSNVNMLGLP-- 113
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ N D + + + +P+ KL+ L GI + H+A
Sbjct: 114 ----EPKNKVIDTVFLAKKYMKHAPNH-------------KLETLKRMLGIRLSS-HNAF 155
Query: 179 ADVYA 183
D
Sbjct: 156 DDCIT 160
>gi|184200651|ref|YP_001854858.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
DC2201]
gi|183580881|dbj|BAG29352.1| putative DNA polymerase III epsilon subunit [Kocuria rhizophila
DC2201]
Length = 193
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 35/189 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M F D+ET + +L VRV R + +++ PA +P V I
Sbjct: 1 MPVSFTAIDFET--ANRSLASACALGVVRV-RDGQVVDTRYSLIRPPAGHDAFEPGNVRI 57
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFS------VPNTCIIGYNNIRFDDYYSRNIFYRNF 114
GI P + V A R+ + P+ ++ +N + FD +
Sbjct: 58 HGIRPAE-----VTHAPTFDRLWDWMCENITPEDPDAVLVAHNAV-FDTGVVKAANRACG 111
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
D W + + L + RA Y S+ L + A G E +
Sbjct: 112 RDPRPWDYA--CT----LRLARAAYTLR--------------SYALPSASRAAGAEVEDH 151
Query: 175 HDAKADVYA 183
H+A +D A
Sbjct: 152 HNALSDALA 160
>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
Length = 244
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 8/112 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARTGDRLIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
AE + +I F II +N FD + F R +
Sbjct: 64 LSDKPKF-AEVANQIRD-FVQDAELII--HNAPFDLGFLDAEFARLDLPPFT 111
>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
17616]
gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
17616]
Length = 244
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARSGDRIIEIGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+F+ HQ + +N FD + F +
Sbjct: 64 LSDK----PKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPF 110
>gi|16129610|ref|NP_416169.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
MG1655]
gi|89108494|ref|AP_002274.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110]
gi|170081315|ref|YP_001730635.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
gi|238900868|ref|YP_002926664.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
gi|300951237|ref|ZP_07165090.1| ribonuclease T [Escherichia coli MS 116-1]
gi|300958527|ref|ZP_07170660.1| ribonuclease T [Escherichia coli MS 175-1]
gi|301027673|ref|ZP_07190989.1| ribonuclease T [Escherichia coli MS 196-1]
gi|301647832|ref|ZP_07247616.1| ribonuclease T [Escherichia coli MS 146-1]
gi|307138309|ref|ZP_07497665.1| ribonuclease T [Escherichia coli H736]
gi|331642247|ref|ZP_08343382.1| ribonuclease T [Escherichia coli H736]
gi|266952|sp|P30014|RNT_ECOLI RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|147688|gb|AAC37008.1| RNaseT [Escherichia coli]
gi|1787941|gb|AAC74724.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr.
MG1655]
gi|85675063|dbj|BAA15418.2| ribonuclease T (RNase T) [Escherichia coli str. K12 substr. W3110]
gi|169889150|gb|ACB02857.1| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]
gi|238863473|gb|ACR65471.1| ribonuclease T (RNase T) [Escherichia coli BW2952]
gi|260449223|gb|ACX39645.1| ribonuclease T [Escherichia coli DH1]
gi|299879216|gb|EFI87427.1| ribonuclease T [Escherichia coli MS 196-1]
gi|300314801|gb|EFJ64585.1| ribonuclease T [Escherichia coli MS 175-1]
gi|300449493|gb|EFK13113.1| ribonuclease T [Escherichia coli MS 116-1]
gi|301074022|gb|EFK88828.1| ribonuclease T [Escherichia coli MS 146-1]
gi|309701879|emb|CBJ01191.1| ribonuclease T [Escherichia coli ETEC H10407]
gi|315136293|dbj|BAJ43452.1| ribonuclease T [Escherichia coli DH1]
gi|315618843|gb|EFU99426.1| ribonuclease T [Escherichia coli 3431]
gi|323937257|gb|EGB33536.1| ribonuclease T [Escherichia coli E1520]
gi|323940680|gb|EGB36871.1| ribonuclease T [Escherichia coli E482]
gi|331039045|gb|EGI11265.1| ribonuclease T [Escherichia coli H736]
Length = 215
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|307702203|ref|ZP_07639163.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
ATCC 35037]
gi|307624216|gb|EFO03193.1| dnaQ family exonuclease/DinG family helicase [Streptococcus oralis
ATCC 35037]
Length = 829
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 49/224 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI 60
+ +V+ D E + + Q G+ V E I+ A D P P I
Sbjct: 5 NDRYVVVDLEATSTG-SKAKIIQV-GIVVIENGEIIDQY-------ATDVNPHEPLDSHI 55
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFY 115
TG+T Q+ EFS+ + F V + + +N ++FD + + +F+ +
Sbjct: 56 KELTGLTDQRLAVA----PEFSQVAGKIFELVKDGIFVAHN-VQFDANLLAEFLFFEGYE 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P + L L GIE +AH
Sbjct: 111 LRTPR-----------VDTVELAQVLYPQ----------FEKYNLGILCQELGIELEHAH 149
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
A +D AT L+ +R+K +L K L L+D+ +
Sbjct: 150 TALSDAQATAELLLYMRQKLFEL--------PKGLLESLLDLAD 185
>gi|242041211|ref|XP_002468000.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
gi|241921854|gb|EER94998.1| hypothetical protein SORBIDRAFT_01g037840 [Sorghum bicolor]
Length = 583
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 52/225 (23%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA----VF 59
+++D ET G DR +FA VR + F L +PE +
Sbjct: 382 TILVFDIETTGFSRREDRIIEFA-VR---DL--MGGKNSTF-----QTLINPEKEVRNAY 430
Query: 60 ITGIT------PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+ GI+ P +V + + +N FD + F R
Sbjct: 431 VHGISNSMLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRC 490
Query: 114 FYD-SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALAN----- 167
+ W +D + DG+ KL ++L N
Sbjct: 491 KLEMP---------GDWLFVDTLPIARQL--------VDSDGS---KLSSVSLKNLRERY 530
Query: 168 GIE-HVNAHDAKADVYATLALVWL----IREKKPKLFEYLYDYRN 207
I +AH A DV ++ ++ P+L E + +
Sbjct: 531 NIPLTGSAHRAMQDVTTLCYVLQKLTFELKLTVPQLLEKSFQASD 575
>gi|194366202|ref|YP_002028812.1| oligoribonuclease [Stenotrophomonas maltophilia R551-3]
gi|194349006|gb|ACF52129.1| Exonuclease RNase T and DNA polymerase III [Stenotrophomonas
maltophilia R551-3]
Length = 190
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G D D + A V D Q +
Sbjct: 8 NERLIWIDLEMTGLDTDNDSIIEIATVVTDAQLNVLAE 45
>gi|290956499|ref|YP_003487681.1| DNA exonuclease [Streptomyces scabiei 87.22]
gi|260646025|emb|CBG69116.1| putative DNA exonuclease [Streptomyces scabiei 87.22]
Length = 239
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY-LPDPEAVFITGITPQ 66
+D ET G D R A + V R E+I E +P+ EAV + GIT
Sbjct: 11 FDLETTGTDPREARIVTGAVIEV-RDGERIGHREWLA---DPGVEIPE-EAVAVHGITNA 65
Query: 67 KALRDGVVEAEFSRRIHQFF-SVPNTC--IIGYNNIRFDDYYSRNIFYRNFYDSY 118
+A+ +G + I S T ++ YN FD R+ S
Sbjct: 66 RAVAEGRPADRVADAIADVLVSYWRTGVPVVAYNA-AFDLSLLSAELRRHALPSL 119
>gi|226325409|ref|ZP_03800927.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
gi|225206152|gb|EEG88506.1| hypothetical protein COPCOM_03214 [Coprococcus comes ATCC 27758]
Length = 231
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M +V +D ET G D + + ++V K+ + F P ++ P +
Sbjct: 1 MLKSYVCFDLETTGLDPLYNEIIEIGALKVRDG--KVAERFMEFIHPQEEI--SPMITNL 56
Query: 61 TGIT 64
TGIT
Sbjct: 57 TGIT 60
>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
M21/2]
gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
M21/2]
Length = 1417
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 31/181 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAG--VRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
F ++D ET G D ++ + +R E +E + F KP P+ +TG
Sbjct: 397 FCVFDTETTGLDPGVEYLTEIGAVIIR---NGEVVEEFDTF-VKPGKPI--TPKITELTG 450
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + + D E E F ++G+N FD + R R+
Sbjct: 451 IT-NEMVADAPSEKEALEAFLAFAGD--RILVGHNVHAFDMRFLRAAAKRSGIKLEPT-- 505
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + + +Y G ++K + + AH A D
Sbjct: 506 -----YIDTLTMAQTMY-------------PGLHNYKQGTINKHLELPAYEAHRACEDSA 547
Query: 183 A 183
A
Sbjct: 548 A 548
>gi|118602011|ref|YP_908711.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
gi|118614749|ref|YP_908532.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
gi|134044854|ref|YP_001102265.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
gi|134047136|ref|YP_001102053.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|165937990|ref|ZP_02226550.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
gi|229516080|ref|ZP_04405530.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
gi|237810081|ref|YP_002894521.1| exonuclease family protein [Escherichia coli]
gi|237810261|ref|YP_002894700.1| exonuclease family protein [Salmonella enterica]
gi|300927181|ref|ZP_07142918.1| exonuclease [Escherichia coli MS 182-1]
gi|309796486|ref|ZP_07690894.1| exonuclease [Escherichia coli MS 145-7]
gi|118596840|dbj|BAF38144.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
gi|118597020|dbj|BAF38323.1| exonuclease, Ycg4D [Photobacterium damselae subsp. piscicida]
gi|133905055|gb|ABO41070.1| putative exonuclease [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|133905388|gb|ABO42150.1| putative exonuclease [Yersinia pestis biovar Orientalis str. IP275]
gi|165914013|gb|EDR32630.1| exonuclease, Ycg4D [Yersinia pestis biovar Orientalis str. IP275]
gi|229346860|gb|EEO11828.1| hypothetical protein VCC_000094 [Vibrio cholerae RC9]
gi|229561745|gb|ACQ77947.1| exonuclease family protein [Salmonella enterica]
gi|229561937|gb|ACQ78138.1| exonuclease family protein [Escherichia coli]
gi|300416848|gb|EFK00159.1| exonuclease [Escherichia coli MS 182-1]
gi|308119991|gb|EFO57253.1| exonuclease [Escherichia coli MS 145-7]
gi|324008196|gb|EGB77415.1| exonuclease [Escherichia coli MS 57-2]
gi|327536618|gb|AEA95451.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Dublin]
Length = 289
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 69/206 (33%), Gaps = 28/206 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFITGITPQK 67
D ET G D+ + A D V C + DP+A+ + GIT +
Sbjct: 110 DTETTGLG-ERDQVIELA--VTDI------RGAVLLCTRLRPTVEIDPQAMGVHGITETE 160
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + + + + S + I N FD R F D W W N
Sbjct: 161 LSNEPTW-TQVAPALARLLSGRHLVIF---NSSFDSRMLRQT-ASAFGDQLSW-WQEQNC 214
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLA 186
L + A AF + G S L D G+ AH A D AT
Sbjct: 215 ---LCAMKLAADAFGS------TNRHGTIS--LADATCEAGVSWKGRAHSAATDAIATAD 263
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLR 212
LV I + + L L + ++K L
Sbjct: 264 LVTEIAKVQRDLVVQLQELQSKGNLE 289
>gi|237816422|ref|ZP_04595415.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308
A]
gi|237788489|gb|EEP62704.1| DNA polymerase III, epsilon subunit [Brucella abortus str. 2308
A]
Length = 248
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 75
Query: 66 QKALRDGVVEAEFSRRIHQFF 86
++ L V I F
Sbjct: 76 EQLLDKPV-----FAEILDEF 91
>gi|162455854|ref|YP_001618221.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
56']
gi|161166436|emb|CAN97741.1| DNA polymerase III, epsilon subunit [Sorangium cellulosum 'So ce
56']
Length = 258
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 65/204 (31%), Gaps = 44/204 (21%)
Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFI 60
D ET GRD A DR + G+ I + + ++L P E+ I
Sbjct: 47 FVDVETTGRDPAGDRIIEL-GI-------VIGRSGEILTR--YNWLIHPGRPIPAESTAI 96
Query: 61 TGITPQKALRDGVVE-AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY---- 115
GI + A +G AE + I F YN FD + R
Sbjct: 97 HGI--KDADVEGKPSFAEVAEEILGCF--KGAIPAAYNA-TFDRSFLLAELERVGMRPRE 151
Query: 116 -DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
D +D + ++ L D+A GI A
Sbjct: 152 PPPAMR------REVDWVDPLTFARELY-------KNEESRA---LGDMAARLGISLEKA 195
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A D A L +++ + K P++
Sbjct: 196 HRATDDAEAALQVLYALA-KDPRV 218
>gi|332343370|gb|AEE56704.1| ribonuclease T [Escherichia coli UMNK88]
Length = 215
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|332090790|gb|EGI95882.1| ribonuclease T [Shigella boydii 5216-82]
Length = 215
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|322374613|ref|ZP_08049127.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. C300]
gi|321280113|gb|EFX57152.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus sp. C300]
Length = 829
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 41/203 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI 60
+ +V+ D E + + Q G+ V E I+ A D P P I
Sbjct: 5 NDRYVVVDLEATSTG-SKAKIIQV-GIVVIENGEIIDQY-------ATDVNPHEPLDSHI 55
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFY 115
TG+T Q+ EFS+ + F V + + +N ++FD + + +F+ +
Sbjct: 56 KELTGLTDQRLAAA----PEFSQVAGKIFELVKDGIFVAHN-VQFDANLLAEFLFFEGYE 110
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P + L L GIE +AH
Sbjct: 111 LRTPR-----------VDTVELAQVLYPQ----------FEKYNLGILCQELGIELEHAH 149
Query: 176 DAKADVYATLALVWLIREKKPKL 198
A +D AT L+ +R+K +L
Sbjct: 150 TALSDAQATAELLLYMRQKLFEL 172
>gi|300904499|ref|ZP_07122340.1| ribonuclease T [Escherichia coli MS 84-1]
gi|300918020|ref|ZP_07134642.1| ribonuclease T [Escherichia coli MS 115-1]
gi|301303165|ref|ZP_07209291.1| ribonuclease T [Escherichia coli MS 124-1]
gi|300403565|gb|EFJ87103.1| ribonuclease T [Escherichia coli MS 84-1]
gi|300414762|gb|EFJ98072.1| ribonuclease T [Escherichia coli MS 115-1]
gi|300841574|gb|EFK69334.1| ribonuclease T [Escherichia coli MS 124-1]
gi|315257547|gb|EFU37515.1| ribonuclease T [Escherichia coli MS 85-1]
Length = 215
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|215486829|ref|YP_002329260.1| ribonuclease T [Escherichia coli O127:H6 str. E2348/69]
gi|312966583|ref|ZP_07780803.1| ribonuclease T [Escherichia coli 2362-75]
gi|331647141|ref|ZP_08348235.1| ribonuclease T [Escherichia coli M605]
gi|331657625|ref|ZP_08358587.1| ribonuclease T [Escherichia coli TA206]
gi|215264901|emb|CAS09287.1| ribonuclease T (RNase T) [Escherichia coli O127:H6 str. E2348/69]
gi|281178725|dbj|BAI55055.1| ribonuclease T [Escherichia coli SE15]
gi|312288693|gb|EFR16593.1| ribonuclease T [Escherichia coli 2362-75]
gi|315299705|gb|EFU58947.1| ribonuclease T [Escherichia coli MS 16-3]
gi|330911459|gb|EGH39969.1| ribonuclease T [Escherichia coli AA86]
gi|331043924|gb|EGI16060.1| ribonuclease T [Escherichia coli M605]
gi|331055873|gb|EGI27882.1| ribonuclease T [Escherichia coli TA206]
Length = 215
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|15802066|ref|NP_288088.1| ribonuclease T [Escherichia coli O157:H7 EDL933]
gi|15831615|ref|NP_310388.1| ribonuclease T [Escherichia coli O157:H7 str. Sakai]
gi|24113043|ref|NP_707553.1| ribonuclease T [Shigella flexneri 2a str. 301]
gi|26247900|ref|NP_753940.1| ribonuclease T [Escherichia coli CFT073]
gi|30063168|ref|NP_837339.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
gi|74312020|ref|YP_310439.1| ribonuclease T [Shigella sonnei Ss046]
gi|82777129|ref|YP_403478.1| ribonuclease T [Shigella dysenteriae Sd197]
gi|91210866|ref|YP_540852.1| ribonuclease T [Escherichia coli UTI89]
gi|110641774|ref|YP_669504.1| ribonuclease T [Escherichia coli 536]
gi|117623836|ref|YP_852749.1| ribonuclease T [Escherichia coli APEC O1]
gi|157159164|ref|YP_001462944.1| ribonuclease T [Escherichia coli E24377A]
gi|157161115|ref|YP_001458433.1| ribonuclease T [Escherichia coli HS]
gi|168752335|ref|ZP_02777357.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
gi|168759015|ref|ZP_02784022.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
gi|168765301|ref|ZP_02790308.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
gi|168771196|ref|ZP_02796203.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
gi|168775884|ref|ZP_02800891.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
gi|168783923|ref|ZP_02808930.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
gi|168789491|ref|ZP_02814498.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
gi|168802776|ref|ZP_02827783.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
gi|170019996|ref|YP_001724950.1| ribonuclease T [Escherichia coli ATCC 8739]
gi|170681755|ref|YP_001743601.1| ribonuclease T [Escherichia coli SMS-3-5]
gi|187731741|ref|YP_001880408.1| ribonuclease T [Shigella boydii CDC 3083-94]
gi|188496363|ref|ZP_03003633.1| ribonuclease T [Escherichia coli 53638]
gi|191165895|ref|ZP_03027732.1| ribonuclease T [Escherichia coli B7A]
gi|191173445|ref|ZP_03034973.1| ribonuclease T [Escherichia coli F11]
gi|193064949|ref|ZP_03046025.1| ribonuclease T [Escherichia coli E22]
gi|193070264|ref|ZP_03051208.1| ribonuclease T [Escherichia coli E110019]
gi|194426088|ref|ZP_03058644.1| ribonuclease T [Escherichia coli B171]
gi|194436646|ref|ZP_03068747.1| ribonuclease T [Escherichia coli 101-1]
gi|195940215|ref|ZP_03085597.1| ribonuclease T [Escherichia coli O157:H7 str. EC4024]
gi|208810464|ref|ZP_03252340.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
gi|208816877|ref|ZP_03257997.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
gi|208820253|ref|ZP_03260573.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
gi|209396384|ref|YP_002270721.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
gi|209918966|ref|YP_002293050.1| ribonuclease T [Escherichia coli SE11]
gi|217328725|ref|ZP_03444806.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
gi|218554220|ref|YP_002387133.1| ribonuclease T [Escherichia coli IAI1]
gi|218558523|ref|YP_002391436.1| ribonuclease T [Escherichia coli S88]
gi|218689598|ref|YP_002397810.1| ribonuclease T [Escherichia coli ED1a]
gi|218695215|ref|YP_002402882.1| ribonuclease T [Escherichia coli 55989]
gi|218699780|ref|YP_002407409.1| ribonuclease T [Escherichia coli IAI39]
gi|218705152|ref|YP_002412671.1| ribonuclease T [Escherichia coli UMN026]
gi|227885930|ref|ZP_04003735.1| exoribonuclease T [Escherichia coli 83972]
gi|237705597|ref|ZP_04536078.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
gi|253773389|ref|YP_003036220.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254161714|ref|YP_003044822.1| ribonuclease T [Escherichia coli B str. REL606]
gi|254793269|ref|YP_003078106.1| ribonuclease T [Escherichia coli O157:H7 str. TW14359]
gi|256018153|ref|ZP_05432018.1| ribonuclease T [Shigella sp. D9]
gi|260843958|ref|YP_003221736.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
gi|260855477|ref|YP_003229368.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
gi|260868144|ref|YP_003234546.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
gi|261227902|ref|ZP_05942183.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. FRIK2000]
gi|261258364|ref|ZP_05950897.1| ribonuclease T [Escherichia coli O157:H7 str. FRIK966]
gi|291282784|ref|YP_003499602.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
gi|293405152|ref|ZP_06649144.1| ribonuclease T [Escherichia coli FVEC1412]
gi|293409965|ref|ZP_06653541.1| ribonuclease T [Escherichia coli B354]
gi|293414968|ref|ZP_06657611.1| ribonuclease T [Escherichia coli B185]
gi|293446028|ref|ZP_06662450.1| ribonuclease T [Escherichia coli B088]
gi|297520520|ref|ZP_06938906.1| ribonuclease T [Escherichia coli OP50]
gi|298380798|ref|ZP_06990397.1| ribonuclease T [Escherichia coli FVEC1302]
gi|300819590|ref|ZP_07099783.1| ribonuclease T [Escherichia coli MS 107-1]
gi|300821475|ref|ZP_07101622.1| ribonuclease T [Escherichia coli MS 119-7]
gi|300901538|ref|ZP_07119609.1| ribonuclease T [Escherichia coli MS 198-1]
gi|300924684|ref|ZP_07140632.1| ribonuclease T [Escherichia coli MS 182-1]
gi|300930881|ref|ZP_07146250.1| ribonuclease T [Escherichia coli MS 187-1]
gi|300939029|ref|ZP_07153724.1| ribonuclease T [Escherichia coli MS 21-1]
gi|300987874|ref|ZP_07178425.1| ribonuclease T [Escherichia coli MS 200-1]
gi|300995389|ref|ZP_07181069.1| ribonuclease T [Escherichia coli MS 45-1]
gi|301026836|ref|ZP_07190236.1| ribonuclease T [Escherichia coli MS 69-1]
gi|301051019|ref|ZP_07197863.1| ribonuclease T [Escherichia coli MS 185-1]
gi|301326587|ref|ZP_07219926.1| ribonuclease T [Escherichia coli MS 78-1]
gi|306813383|ref|ZP_07447573.1| ribonuclease T [Escherichia coli NC101]
gi|307310775|ref|ZP_07590421.1| ribonuclease T [Escherichia coli W]
gi|309788378|ref|ZP_07682982.1| ribonuclease T [Shigella dysenteriae 1617]
gi|309793418|ref|ZP_07687845.1| ribonuclease T [Escherichia coli MS 145-7]
gi|312969674|ref|ZP_07783857.1| ribonuclease T [Escherichia coli 1827-70]
gi|331653048|ref|ZP_08354053.1| ribonuclease T [Escherichia coli M718]
gi|331663127|ref|ZP_08364037.1| ribonuclease T [Escherichia coli TA143]
gi|331668331|ref|ZP_08369179.1| ribonuclease T [Escherichia coli TA271]
gi|332279200|ref|ZP_08391613.1| ribonuclease T [Shigella sp. D9]
gi|54039257|sp|P66682|RNT_ECO57 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|54039258|sp|P66683|RNT_SHIFL RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|54042001|sp|P66681|RNT_ECOL6 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|122423656|sp|Q1RBE3|RNT_ECOUT RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|123148046|sp|Q0THH6|RNT_ECOL5 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|123562458|sp|Q32FB8|RNT_SHIDS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|123617229|sp|Q3Z208|RNT_SHISS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|166228563|sp|A1ABJ5|RNT_ECOK1 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|166991088|sp|A7ZMB5|RNT_ECO24 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|166991089|sp|A8A0J6|RNT_ECOHS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|12515647|gb|AAG56641.1|AE005388_6 RNase T, degrades tRNA [Escherichia coli O157:H7 str. EDL933]
gi|26108303|gb|AAN80505.1|AE016761_80 Ribonuclease T [Escherichia coli CFT073]
gi|13361828|dbj|BAB35784.1| RNase T [Escherichia coli O157:H7 str. Sakai]
gi|24052011|gb|AAN43260.1| RNase T [Shigella flexneri 2a str. 301]
gi|30041420|gb|AAP17148.1| RNase T [Shigella flexneri 2a str. 2457T]
gi|73855497|gb|AAZ88204.1| RNase T [Shigella sonnei Ss046]
gi|81241277|gb|ABB61987.1| RNase T [Shigella dysenteriae Sd197]
gi|91072440|gb|ABE07321.1| RNase T, degrades tRNA [Escherichia coli UTI89]
gi|110343366|gb|ABG69603.1| ribonuclease T [Escherichia coli 536]
gi|115512960|gb|ABJ01035.1| RNase T [Escherichia coli APEC O1]
gi|157066795|gb|ABV06050.1| ribonuclease T [Escherichia coli HS]
gi|157081194|gb|ABV20902.1| ribonuclease T [Escherichia coli E24377A]
gi|169754924|gb|ACA77623.1| ribonuclease T [Escherichia coli ATCC 8739]
gi|170519473|gb|ACB17651.1| ribonuclease T [Escherichia coli SMS-3-5]
gi|187428733|gb|ACD08007.1| ribonuclease T [Shigella boydii CDC 3083-94]
gi|187768648|gb|EDU32492.1| ribonuclease T [Escherichia coli O157:H7 str. EC4196]
gi|188013802|gb|EDU51924.1| ribonuclease T [Escherichia coli O157:H7 str. EC4113]
gi|188491562|gb|EDU66665.1| ribonuclease T [Escherichia coli 53638]
gi|188998818|gb|EDU67804.1| ribonuclease T [Escherichia coli O157:H7 str. EC4076]
gi|189354299|gb|EDU72718.1| ribonuclease T [Escherichia coli O157:H7 str. EC4401]
gi|189360025|gb|EDU78444.1| ribonuclease T [Escherichia coli O157:H7 str. EC4486]
gi|189364907|gb|EDU83323.1| ribonuclease T [Escherichia coli O157:H7 str. EC4501]
gi|189370964|gb|EDU89380.1| ribonuclease T [Escherichia coli O157:H7 str. EC869]
gi|189375329|gb|EDU93745.1| ribonuclease T [Escherichia coli O157:H7 str. EC508]
gi|190904026|gb|EDV63738.1| ribonuclease T [Escherichia coli B7A]
gi|190906287|gb|EDV65898.1| ribonuclease T [Escherichia coli F11]
gi|192927436|gb|EDV82054.1| ribonuclease T [Escherichia coli E22]
gi|192956445|gb|EDV86904.1| ribonuclease T [Escherichia coli E110019]
gi|194416143|gb|EDX32409.1| ribonuclease T [Escherichia coli B171]
gi|194424678|gb|EDX40664.1| ribonuclease T [Escherichia coli 101-1]
gi|208724980|gb|EDZ74687.1| ribonuclease T [Escherichia coli O157:H7 str. EC4206]
gi|208731220|gb|EDZ79909.1| ribonuclease T [Escherichia coli O157:H7 str. EC4045]
gi|208740376|gb|EDZ88058.1| ribonuclease T [Escherichia coli O157:H7 str. EC4042]
gi|209157784|gb|ACI35217.1| ribonuclease T [Escherichia coli O157:H7 str. EC4115]
gi|209769438|gb|ACI83031.1| RNase T [Escherichia coli]
gi|209769440|gb|ACI83032.1| RNase T [Escherichia coli]
gi|209769442|gb|ACI83033.1| RNase T [Escherichia coli]
gi|209769444|gb|ACI83034.1| RNase T [Escherichia coli]
gi|209769446|gb|ACI83035.1| RNase T [Escherichia coli]
gi|209912225|dbj|BAG77299.1| ribonuclease T [Escherichia coli SE11]
gi|217318072|gb|EEC26499.1| ribonuclease T [Escherichia coli O157:H7 str. TW14588]
gi|218351947|emb|CAU97679.1| ribonuclease T (RNase T) [Escherichia coli 55989]
gi|218360988|emb|CAQ98561.1| ribonuclease T (RNase T) [Escherichia coli IAI1]
gi|218365292|emb|CAR03013.1| ribonuclease T (RNase T) [Escherichia coli S88]
gi|218369766|emb|CAR17537.1| ribonuclease T (RNase T) [Escherichia coli IAI39]
gi|218427162|emb|CAR08045.2| ribonuclease T (RNase T) [Escherichia coli ED1a]
gi|218432249|emb|CAR13139.1| ribonuclease T (RNase T) [Escherichia coli UMN026]
gi|222033411|emb|CAP76152.1| ribonuclease T [Escherichia coli LF82]
gi|226900354|gb|EEH86613.1| ribonuclease T [Escherichia sp. 3_2_53FAA]
gi|227837109|gb|EEJ47575.1| exoribonuclease T [Escherichia coli 83972]
gi|242377382|emb|CAQ32129.1| RNase T [Escherichia coli BL21(DE3)]
gi|253324433|gb|ACT29035.1| ribonuclease T [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253973615|gb|ACT39286.1| ribonuclease T [Escherichia coli B str. REL606]
gi|253977810|gb|ACT43480.1| ribonuclease T [Escherichia coli BL21(DE3)]
gi|254592669|gb|ACT72030.1| ribonuclease T (RNase T) [Escherichia coli O157:H7 str. TW14359]
gi|257754126|dbj|BAI25628.1| ribonuclease T [Escherichia coli O26:H11 str. 11368]
gi|257759105|dbj|BAI30602.1| ribonuclease T [Escherichia coli O103:H2 str. 12009]
gi|257764500|dbj|BAI35995.1| ribonuclease T [Escherichia coli O111:H- str. 11128]
gi|281601087|gb|ADA74071.1| Ribonuclease T [Shigella flexneri 2002017]
gi|284921576|emb|CBG34648.1| ribonuclease T [Escherichia coli 042]
gi|290762657|gb|ADD56618.1| Ribonuclease T [Escherichia coli O55:H7 str. CB9615]
gi|291322858|gb|EFE62286.1| ribonuclease T [Escherichia coli B088]
gi|291427360|gb|EFF00387.1| ribonuclease T [Escherichia coli FVEC1412]
gi|291432616|gb|EFF05595.1| ribonuclease T [Escherichia coli B185]
gi|291470433|gb|EFF12917.1| ribonuclease T [Escherichia coli B354]
gi|294491548|gb|ADE90304.1| ribonuclease T [Escherichia coli IHE3034]
gi|298278240|gb|EFI19754.1| ribonuclease T [Escherichia coli FVEC1302]
gi|300297314|gb|EFJ53699.1| ribonuclease T [Escherichia coli MS 185-1]
gi|300306022|gb|EFJ60542.1| ribonuclease T [Escherichia coli MS 200-1]
gi|300355068|gb|EFJ70938.1| ribonuclease T [Escherichia coli MS 198-1]
gi|300395276|gb|EFJ78814.1| ribonuclease T [Escherichia coli MS 69-1]
gi|300406150|gb|EFJ89688.1| ribonuclease T [Escherichia coli MS 45-1]
gi|300419111|gb|EFK02422.1| ribonuclease T [Escherichia coli MS 182-1]
gi|300456057|gb|EFK19550.1| ribonuclease T [Escherichia coli MS 21-1]
gi|300461297|gb|EFK24790.1| ribonuclease T [Escherichia coli MS 187-1]
gi|300525978|gb|EFK47047.1| ribonuclease T [Escherichia coli MS 119-7]
gi|300527838|gb|EFK48900.1| ribonuclease T [Escherichia coli MS 107-1]
gi|300846749|gb|EFK74509.1| ribonuclease T [Escherichia coli MS 78-1]
gi|305853128|gb|EFM53568.1| ribonuclease T [Escherichia coli NC101]
gi|306908953|gb|EFN39449.1| ribonuclease T [Escherichia coli W]
gi|307553675|gb|ADN46450.1| ribonuclease T [Escherichia coli ABU 83972]
gi|307626861|gb|ADN71165.1| ribonuclease T [Escherichia coli UM146]
gi|308123005|gb|EFO60267.1| ribonuclease T [Escherichia coli MS 145-7]
gi|308923760|gb|EFP69263.1| ribonuclease T [Shigella dysenteriae 1617]
gi|310337959|gb|EFQ03048.1| ribonuclease T [Escherichia coli 1827-70]
gi|312946253|gb|ADR27080.1| ribonuclease T [Escherichia coli O83:H1 str. NRG 857C]
gi|313648931|gb|EFS13368.1| ribonuclease T [Shigella flexneri 2a str. 2457T]
gi|315060959|gb|ADT75286.1| ribonuclease T (RNase T) [Escherichia coli W]
gi|315286357|gb|EFU45793.1| ribonuclease T [Escherichia coli MS 110-3]
gi|320174139|gb|EFW49304.1| Ribonuclease T [Shigella dysenteriae CDC 74-1112]
gi|320181325|gb|EFW56244.1| Ribonuclease T [Shigella boydii ATCC 9905]
gi|320188340|gb|EFW63002.1| Ribonuclease T [Escherichia coli O157:H7 str. EC1212]
gi|320195450|gb|EFW70075.1| Ribonuclease T [Escherichia coli WV_060327]
gi|320197835|gb|EFW72443.1| Ribonuclease T [Escherichia coli EC4100B]
gi|320642007|gb|EFX11371.1| ribonuclease T [Escherichia coli O157:H7 str. G5101]
gi|320647324|gb|EFX16132.1| ribonuclease T [Escherichia coli O157:H- str. 493-89]
gi|320652618|gb|EFX20887.1| ribonuclease T [Escherichia coli O157:H- str. H 2687]
gi|320653004|gb|EFX21200.1| ribonuclease T [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320658687|gb|EFX26364.1| ribonuclease T [Escherichia coli O55:H7 str. USDA 5905]
gi|323152841|gb|EFZ39111.1| ribonuclease T [Escherichia coli EPECa14]
gi|323169213|gb|EFZ54889.1| ribonuclease T [Shigella sonnei 53G]
gi|323169961|gb|EFZ55617.1| ribonuclease T [Escherichia coli LT-68]
gi|323180968|gb|EFZ66506.1| ribonuclease T [Escherichia coli 1180]
gi|323186075|gb|EFZ71431.1| ribonuclease T [Escherichia coli 1357]
gi|323378470|gb|ADX50738.1| ribonuclease T [Escherichia coli KO11]
gi|323948052|gb|EGB44044.1| ribonuclease T [Escherichia coli H120]
gi|323952162|gb|EGB48035.1| ribonuclease T [Escherichia coli H252]
gi|323956663|gb|EGB52400.1| ribonuclease T [Escherichia coli H263]
gi|323962144|gb|EGB57739.1| ribonuclease T [Escherichia coli H489]
gi|323968420|gb|EGB63826.1| ribonuclease T [Escherichia coli M863]
gi|323973968|gb|EGB69140.1| ribonuclease T [Escherichia coli TA007]
gi|323978209|gb|EGB73295.1| ribonuclease T [Escherichia coli TW10509]
gi|324007017|gb|EGB76236.1| ribonuclease T [Escherichia coli MS 57-2]
gi|324011423|gb|EGB80642.1| ribonuclease T [Escherichia coli MS 60-1]
gi|324016541|gb|EGB85760.1| ribonuclease T [Escherichia coli MS 117-3]
gi|324119138|gb|EGC13026.1| ribonuclease T [Escherichia coli E1167]
gi|326342019|gb|EGD65800.1| Ribonuclease T [Escherichia coli O157:H7 str. 1044]
gi|326343571|gb|EGD67333.1| Ribonuclease T [Escherichia coli O157:H7 str. 1125]
gi|327252769|gb|EGE64423.1| ribonuclease T [Escherichia coli STEC_7v]
gi|331049146|gb|EGI21218.1| ribonuclease T [Escherichia coli M718]
gi|331058926|gb|EGI30903.1| ribonuclease T [Escherichia coli TA143]
gi|331063525|gb|EGI35436.1| ribonuclease T [Escherichia coli TA271]
gi|332101552|gb|EGJ04898.1| ribonuclease T [Shigella sp. D9]
gi|332756966|gb|EGJ87309.1| ribonuclease T [Shigella flexneri 4343-70]
gi|332758172|gb|EGJ88497.1| ribonuclease T [Shigella flexneri 2747-71]
gi|332758486|gb|EGJ88807.1| ribonuclease T [Shigella flexneri K-671]
gi|332767056|gb|EGJ97255.1| ribonuclease T [Shigella flexneri 2930-71]
gi|333004001|gb|EGK23536.1| ribonuclease T [Shigella flexneri K-218]
gi|333005308|gb|EGK24828.1| ribonuclease T [Shigella flexneri VA-6]
gi|333005888|gb|EGK25404.1| ribonuclease T [Shigella flexneri K-272]
gi|333017888|gb|EGK37193.1| ribonuclease T [Shigella flexneri K-304]
gi|333018868|gb|EGK38161.1| ribonuclease T [Shigella flexneri K-227]
Length = 215
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|257897430|ref|ZP_05677083.1| DNA polymerase subunit III [Enterococcus faecium Com12]
gi|257833995|gb|EEV60416.1| DNA polymerase subunit III [Enterococcus faecium Com12]
Length = 291
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 27/196 (13%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ +V+ D+ET G Q ++ + E+I+ + + IT
Sbjct: 122 DDYVVIDFETTGLSPLDSEILQIGAIKYESN-EEIDR---IYQNIKPFR--SNISKRITK 175
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT L D V F Q S + + +N FD + + ++ ++ +
Sbjct: 176 IT-GLELEDVVNMPTFEDFSPQLMSFISCYTLVAHNAPFD---LKFLLHQLNENNIELNQ 231
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D L + A + + + + K L L N N+HDA D
Sbjct: 232 R--IRVIDTLPL-----ARR----HFETPNHKLITLK-DYLNLDN-----NSHDALEDCL 274
Query: 183 ATLALVWLIREKKPKL 198
T + I+ + K+
Sbjct: 275 VTNKVYQYIKHENNKI 290
>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
Length = 241
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 19/90 (21%)
Query: 5 FVIYDYETFGRD---VALD--RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
+++D ET G + + R + V E I F D DPE
Sbjct: 8 IIVFDTETTGMNMTGPHYEGHRIIEIGAV------EIINRKLTGKTFHVYIKPDRPIDPE 61
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFF 86
A+ + GIT + + G IHQ F
Sbjct: 62 AIDVHGITDEFLI--GKPSY---ADIHQEF 86
>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
Length = 1468
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G + +F V + +IE + FF KP +P P ITGI+
Sbjct: 410 FVIFDLETTGLSAFYNEIVEFGAVVLQNGI-EIEKHQ-FFIKPT-GKIP-PAITKITGIS 465
Query: 65 PQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSY 118
QK + + + E + +I + + ++ +N + F + + R ++ +
Sbjct: 466 -QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 520
>gi|11498577|ref|NP_069805.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
DSM 4304]
gi|2649627|gb|AAB90271.1| DNA polymerase III, subunit epsilon (dnaQ) [Archaeoglobus fulgidus
DSM 4304]
Length = 205
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 41/200 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIEST----EVFFCKPADDYLPDPEAVFI 60
F+ D ET G + D V I + E ++ + E++
Sbjct: 10 FLSIDLETTGLNQKKDEIIAIGAV------PIIGTRILAGESYYRLLRPEKFKH-ESMKF 62
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
G+ P + L+ +E + + ++GY I D + + R
Sbjct: 63 HGLDPAR-LKTAHDFSEIAEEVADLLR--GKVLVGY-AIELDYGFLKRALKREG------ 112
Query: 121 SWDNGNSRWDLLDVMRA-IYAF--SPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ N R D++D +A Y P G L +LA +E H+A
Sbjct: 113 -YKVENKRIDVIDFEKAVCYILGERPVG-----------EMTLDNLAKKYRVEVSYRHNA 160
Query: 178 KADVYAT-----LALVWLIR 192
AD + T + L+ +++
Sbjct: 161 LADAFITAQIFQVQLLKILK 180
>gi|116670981|ref|YP_831914.1| oligoribonuclease [Arthrobacter sp. FB24]
gi|116611090|gb|ABK03814.1| Exonuclease, RNase T and DNA polymerase III [Arthrobacter sp. FB24]
Length = 211
Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 15/116 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-------DYLPD 54
V D E G D+ D + A + D + + +P D D++ D
Sbjct: 5 NERIVWIDCEMTGLDIKNDALIEVAALVTDSELNILGDGVDVVIRPDDAALAQMNDFVRD 64
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYS 106
T L G AE I ++ + +G N++ D +
Sbjct: 65 ----MHTRSGLLDELPHGKTMAEAEAVIMEYIAKWVPDPRKAPLGGNSVGTDRVFL 116
>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
Length = 1450
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 43/189 (22%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEV-FFCKPADDYLPDPEAVF-IT 61
FV+YD ET G + + + V + +E V F + + P+ + +T
Sbjct: 423 SFVVYDLETLGFNSHEGKIIEIGAV------KIVEKRIVDRFSQLINPGQSIPQNIVDVT 476
Query: 62 GITPQKALRDGVVE------AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
IT + +E EF R + ++ +N FD Y + +
Sbjct: 477 NITDSMVQNEPKLEEVLPNFLEFIR---------GSILVAHNA-DFDIGYLKQQCKK--- 523
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
Y +S N +D ++ P+ F L L G+ N H
Sbjct: 524 --YGYSDFNPA----FIDTLQMAKDLYPEL----------KQFGLGPLNKKLGLYLENHH 567
Query: 176 DAKADVYAT 184
A D AT
Sbjct: 568 RAVDDCQAT 576
>gi|82543982|ref|YP_407929.1| ribonuclease T [Shigella boydii Sb227]
gi|194434706|ref|ZP_03066959.1| ribonuclease T [Shigella dysenteriae 1012]
gi|123559690|sp|Q321A7|RNT_SHIBS RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|81245393|gb|ABB66101.1| RNase T [Shigella boydii Sb227]
gi|194417044|gb|EDX33160.1| ribonuclease T [Shigella dysenteriae 1012]
gi|320186326|gb|EFW61062.1| Ribonuclease T [Shigella flexneri CDC 796-83]
gi|332093985|gb|EGI99038.1| ribonuclease T [Shigella dysenteriae 155-74]
gi|332096070|gb|EGJ01075.1| ribonuclease T [Shigella boydii 3594-74]
Length = 215
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMIAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
Length = 1469
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
FVI+D ET G + +F V + +IE + FF KP +P P ITGI+
Sbjct: 411 FVIFDLETTGLSAFYNEIVEFGAVVLQNGI-EIEKHQ-FFIKPT-GKIP-PAITKITGIS 466
Query: 65 PQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYN---NIRFDDYYSRNIFYRNFYDSY 118
QK + + + E + +I + + ++ +N + F + + R ++ +
Sbjct: 467 -QKMIDETAISWEIALEKITKIIKD--SVLVAHNAAFDFSFLEQFFRQKAKKSLKNPI 521
>gi|307704598|ref|ZP_07641501.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
SK597]
gi|307621843|gb|EFO00877.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
SK597]
Length = 816
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V + ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGKIVDRYTT-------DVNPHEPLDAHIQ 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMAQL 172
>gi|296533190|ref|ZP_06895816.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
ATCC 49957]
gi|296266484|gb|EFH12483.1| exonuclease RNase T and DNA polymerase III [Roseomonas cervicalis
ATCC 49957]
Length = 304
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 43/196 (21%), Positives = 61/196 (31%), Gaps = 38/196 (19%)
Query: 9 DYETFGRDVALDRPAQFA----GVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G D D + A +D + +PA +P PE +TG+T
Sbjct: 54 DVETTGLDHGQDEIIELAMLPFTYGLDGTLYSVGEAFSRLRQPAR-PIP-PEVTALTGLT 111
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
E + F P +I +N FD ++ + S
Sbjct: 112 DAMVAGQSFTPEEVAA-----FIGPAALVIAHNA-GFDRRFAEAFCPDFAAKPWACSLH- 164
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
G+ W +G +L DLA +G+ H A D AT
Sbjct: 165 --------------------GVDW--AAEGFEGRRLGDLAARHGLFFDG-HRAVHDCQAT 201
Query: 185 LA-LVW-LIREKKPKL 198
L L L R P L
Sbjct: 202 LEILARPLPRSGVPAL 217
>gi|293604208|ref|ZP_06686616.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
gi|292817433|gb|EFF76506.1| oligoribonuclease [Achromobacter piechaudii ATCC 43553]
Length = 181
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 44/203 (21%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPADDYLPDPE---AV 58
N V D E G D +R + A V + + + +P D L D
Sbjct: 6 NRLVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVIHQP--DTLLDAMDNWNK 63
Query: 59 FITGIT--PQKALRDGVVEAEFSRRIHQFFSV------PNTCIIGYNNIRFDDYYSRNIF 110
G + K V E++ + F + C N I D R +F
Sbjct: 64 STHGKSGLIDKVRASTVSESQAEDTLLAFLAQHVPAGKSPLCG---NTISQDR---RFMF 117
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
+ + N D+ + ++P + G E
Sbjct: 118 --AYMPRLEQFFHYRN--LDVSTLKELARRWAPAVYK--------------------GFE 153
Query: 171 HVNAHDAKADVYATLALVWLIRE 193
+ H+A AD+Y ++ + RE
Sbjct: 154 KKSRHEALADIYESIDELKYYRE 176
>gi|325983091|ref|YP_004295493.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
gi|325532610|gb|ADZ27331.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
Length = 463
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+ D ET G DR + +R + + P +TGIT
Sbjct: 8 YVLLDLETTGVTPTQDRITEIGLIRYENGV-ETGRWNTL---INPGINIPPFIQRLTGIT 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYR 112
+D V A ++++ + ++ +N RFD + +N F R
Sbjct: 64 -----QDMVDHAPTFSQVYETLLQWLDQAVLCAHNARFDYGFLKNEFKR 107
>gi|314933639|ref|ZP_07841004.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus caprae C87]
gi|313653789|gb|EFS17546.1| putative DnaQ family exonuclease/DinG family helicase
[Staphylococcus caprae C87]
Length = 900
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 62/185 (33%), Gaps = 27/185 (14%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+ + D ET G + D Q G+ + I+ + D P +T I
Sbjct: 5 TYAVVDLETTGNQLDYDEIIQI-GITFVSNHKIID---TYHSMIRTDLEIPPFIQALTSI 60
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L E + I+ CI +NI FD + +N F
Sbjct: 61 E-EDMLAQAPYFNEVAEDIYDQIKD---CIFVAHNISFDLNFIKNAFNNCDI------QF 110
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
D L++ + + P+ S++L +LA A+ I AH A D
Sbjct: 111 KPKKVMDTLELFKIAF---------PTDK----SYQLSELAQAHDIPLDKAHRADEDATT 157
Query: 184 TLALV 188
T L+
Sbjct: 158 TAKLM 162
>gi|163794470|ref|ZP_02188441.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
gi|159180194|gb|EDP64717.1| DNA polymerase III, epsilon subunit [alpha proteobacterium BAL199]
Length = 458
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 40/185 (21%), Positives = 52/185 (28%), Gaps = 45/185 (24%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDY--------LPDP-EAVF 59
D ET G D + QF + DD +P P ++
Sbjct: 18 DIETTGLDASRAHAVQFGAI-----------PIAKGVLKPDDACEQMLNPGIPIPSSSIA 66
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
I GIT A+ S N +IG+ +I FD R D
Sbjct: 67 IHGIT--DAMVRNAP--TLSDVWPNLVGQWKNRVVIGH-SIGFDLTVLAAEAKRKKLD-- 119
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W RA+ I P+ S L LA +E N H A
Sbjct: 120 ---WQKP----------RALCVRMLATIAAPT----LASHSLDALATWLNLETRNRHRAL 162
Query: 179 ADVYA 183
D A
Sbjct: 163 GDAEA 167
>gi|83949846|ref|ZP_00958579.1| magnesium transporter [Roseovarius nubinhibens ISM]
gi|83837745|gb|EAP77041.1| magnesium transporter [Roseovarius nubinhibens ISM]
Length = 463
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 18/113 (15%)
Query: 360 LYDGFFADVDRQIMDR--ILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPH--TLSE- 414
++ D DR + + + L F RRL EL N LSE
Sbjct: 30 MFAVDTNDRDRLLSEMEPLHAADIADLLEQLNAFDRRRLIEL-----YSNEFDGEILSEL 84
Query: 415 KEKQDWLEHRKKMLTRSRIEEYKNKLQ-----SLSGEYKGDEGKEGLINALYE 462
E E +L+ + E +L L + + D +E ++ AL +
Sbjct: 85 DESIR--EDVLSILSPEVLAEAVRELDSDDVVDLVEDLEED-QQEAILEALED 134
>gi|323187079|gb|EFZ72395.1| ribonuclease T [Escherichia coli RN587/1]
Length = 215
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R + E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAISEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|302550179|ref|ZP_07302521.1| DNA polymerase III subunit epsilon [Streptomyces
viridochromogenes DSM 40736]
gi|302467797|gb|EFL30890.1| DNA polymerase III subunit epsilon [Streptomyces
viridochromogenes DSM 40736]
Length = 242
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G DV DR A V D V +P P EA + G+T +
Sbjct: 13 FDTETTGVDVETDRIVSAAVVVQDA---PGVRPRVSRWLVNPG-VPVPAEATAVHGLTEE 68
Query: 67 KALRDGVVEAEFSRRIHQFFS 87
R+G A I + +
Sbjct: 69 HLQRNGRWPAPVVYEIAETLA 89
>gi|296135545|ref|YP_003642787.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
gi|295795667|gb|ADG30457.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
Length = 469
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD--DYLPDPEAV 58
M +V+ D ET G + LDR + A +RV++ + + + +P P
Sbjct: 1 MLPCYVLLDLETTGSNPVLDRITEVAVMRVEQ-----GEVVAKWSRLLNPGQRIP-PFIQ 54
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI A+ G F + + +V + ++ +N+RFD + + R D
Sbjct: 55 QLTGI--DDAMVAGAP--AFGEVLPELLAVLDGAVLVAHNVRFDHGFLKQAAAREGVD 108
>gi|239939981|ref|ZP_04691918.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
gi|239986465|ref|ZP_04707129.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
11379]
gi|291443411|ref|ZP_06582801.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
gi|291346358|gb|EFE73262.1| DNA polymerase III subunit epsilon [Streptomyces roseosporus NRRL
15998]
Length = 241
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A V D V P A I G+
Sbjct: 12 FDTETTGVDVERDRIVSAALVAQDTAG---GRVRVTRWLVNPGIPVPPGATEIHGLADDH 68
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIG 95
R+G A I + + +C G
Sbjct: 69 LQRNGRWPAPVMDEIARALAE--SCATG 94
>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
Length = 241
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 19/90 (21%)
Query: 5 FVIYDYETFGRD---VALD--RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
+++D ET G + + R + V E I F D DPE
Sbjct: 8 IIVFDTETTGMNMTGPHYEGHRIVEIGAV------EIINRKLTGKTFHVYIKPDRPIDPE 61
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFF 86
A+ + GIT + + G IHQ F
Sbjct: 62 AIDVHGITDEFLI--GKPSY---ADIHQEF 86
>gi|319406407|emb|CBI80047.1| DNA polymerase III epsilon chain [Bartonella sp. 1-1C]
Length = 235
Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 58/180 (32%), Gaps = 29/180 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I+D ET G + DR + + V+R + P +PD E V I G+T
Sbjct: 4 IIFDTETTGLNKESDRIIEIGCIEMVNRYLT--GRRFHVYLNPQGVVIPD-EVVAIHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
++ E +F + + I +N FD + R N
Sbjct: 61 NERLKD----EKKFDDIVDALLDFIDGATIVAHNANFDIGFLNAELERVNKPLI-----N 111
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVY 182
++ D L + R + P+ L L GI H H A D
Sbjct: 112 SDNVIDTLSIARRRFPMGPNS--------------LDVLCKRFGIDNSHRVLHGALLDAE 157
>gi|227875987|ref|ZP_03994110.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
gi|227843519|gb|EEJ53705.1| exoribonuclease II [Mobiluncus mulieris ATCC 35243]
Length = 205
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-- 58
+T+ V D E G D+A D + + D +++ KP+ L +
Sbjct: 5 LTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMGDFVR 64
Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQ 84
T L G+ E +R++ +
Sbjct: 65 EMHTKSGLLDELDHGLPVTEAARQVLE 91
>gi|225626451|ref|ZP_03784490.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
gi|225618108|gb|EEH15151.1| DNA polymerase III, epsilon subunit [Brucella ceti str. Cudo]
Length = 248
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 75
Query: 66 QKALRDGVVEAEFSRRIHQFF 86
++ L V I F
Sbjct: 76 EQLLDKPV-----FAEILDEF 91
>gi|58040389|ref|YP_192353.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
gi|58002803|gb|AAW61697.1| DNA polymerase III, epsilon chain [Gluconobacter oxydans 621H]
Length = 228
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 21/127 (16%)
Query: 1 MTNHFVIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP---- 55
M + D ET G D + DR + A + + A L P
Sbjct: 1 MKRSILF-DTETTGFDPDMGDRIIEIAALELIDDL-PTGE--------AYHVLIHPERDI 50
Query: 56 --EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
EA + G + + +E + +F +N RFD +
Sbjct: 51 PAEATKVHGFRIEDLEGKPIF-SEVADGFLEFIGDSPMIA---HNARFDFKFVNAELKAC 106
Query: 114 FYDSYRW 120
+ +
Sbjct: 107 GREPLDY 113
>gi|23502919|ref|NP_699046.1| DNA polymerase III subunit epsilon [Brucella suis 1330]
gi|62290915|ref|YP_222708.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 1 str.
9-941]
gi|82700826|ref|YP_415400.1| DNA polymerase III subunit epsilon [Brucella melitensis biovar
Abortus 2308]
gi|148559666|ref|YP_001259876.1| DNA polymerase III subunit epsilon [Brucella ovis ATCC 25840]
gi|161619985|ref|YP_001593872.1| DNA polymerase III subunit epsilon [Brucella canis ATCC 23365]
gi|163844089|ref|YP_001628493.1| DNA polymerase III subunit epsilon [Brucella suis ATCC 23445]
gi|189025128|ref|YP_001935896.1| DNA polymerase III subunit epsilon [Brucella abortus S19]
gi|254690204|ref|ZP_05153458.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
870]
gi|254694694|ref|ZP_05156522.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
Tulya]
gi|254696321|ref|ZP_05158149.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
86/8/59]
gi|254700703|ref|ZP_05162531.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
gi|254705074|ref|ZP_05166902.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
gi|254709049|ref|ZP_05170860.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
gi|254713525|ref|ZP_05175336.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
gi|254716120|ref|ZP_05177931.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
gi|254731237|ref|ZP_05189815.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
292]
gi|256030574|ref|ZP_05444188.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
M292/94/1]
gi|256060036|ref|ZP_05450218.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
gi|256158570|ref|ZP_05456460.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
gi|256253981|ref|ZP_05459517.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
gi|256258458|ref|ZP_05463994.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
C68]
gi|260169479|ref|ZP_05756290.1| DNA polymerase III subunit epsilon [Brucella sp. F5/99]
gi|260546177|ref|ZP_05821917.1| DNA polymerase III [Brucella abortus NCTC 8038]
gi|260567458|ref|ZP_05837928.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
gi|260755744|ref|ZP_05868092.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
870]
gi|260758968|ref|ZP_05871316.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
292]
gi|260760692|ref|ZP_05873035.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
86/8/59]
gi|260884770|ref|ZP_05896384.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
C68]
gi|261215021|ref|ZP_05929302.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
Tulya]
gi|261217890|ref|ZP_05932171.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
gi|261221121|ref|ZP_05935402.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
gi|261316547|ref|ZP_05955744.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
gi|261321260|ref|ZP_05960457.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
gi|261324012|ref|ZP_05963209.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
gi|261751212|ref|ZP_05994921.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
gi|261755776|ref|ZP_05999485.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
gi|261759005|ref|ZP_06002714.1| DNA polymerase III [Brucella sp. F5/99]
gi|265987621|ref|ZP_06100178.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
M292/94/1]
gi|265997081|ref|ZP_06109638.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
gi|294851300|ref|ZP_06791973.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
gi|297247299|ref|ZP_06931017.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
B3196]
gi|23348951|gb|AAN30961.1| DNA polymerase III, epsilon subunit [Brucella suis 1330]
gi|62197047|gb|AAX75347.1| DnaQ, DNA polymerase III, epsilon subunit [Brucella abortus bv. 1
str. 9-941]
gi|82616927|emb|CAJ12028.1| Beta tubulin:DNA polymerase III, epsilon subunit:Exonuclease:DNA
polymerase 3, epsilon subunit [Brucella melitensis
biovar Abortus 2308]
gi|148370923|gb|ABQ60902.1| DNA polymerase III, epsilon subunit [Brucella ovis ATCC 25840]
gi|161336796|gb|ABX63101.1| DNA polymerase III, epsilon subunit [Brucella canis ATCC 23365]
gi|163674812|gb|ABY38923.1| DNA polymerase III, epsilon subunit [Brucella suis ATCC 23445]
gi|189020700|gb|ACD73422.1| DNA polymerase III, epsilon subunit [Brucella abortus S19]
gi|260096284|gb|EEW80160.1| DNA polymerase III [Brucella abortus NCTC 8038]
gi|260156976|gb|EEW92056.1| DNA polymerase III [Brucella suis bv. 4 str. 40]
gi|260669286|gb|EEX56226.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 4 str.
292]
gi|260671124|gb|EEX57945.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 2 str.
86/8/59]
gi|260675852|gb|EEX62673.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 6 str.
870]
gi|260874298|gb|EEX81367.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 9 str.
C68]
gi|260916628|gb|EEX83489.1| DNA polymerase III subunit epsilon [Brucella abortus bv. 3 str.
Tulya]
gi|260919705|gb|EEX86358.1| DNA polymerase III subunit epsilon [Brucella ceti B1/94]
gi|260922979|gb|EEX89547.1| DNA polymerase III subunit epsilon [Brucella ceti M13/05/1]
gi|261293950|gb|EEX97446.1| DNA polymerase III subunit epsilon [Brucella ceti M644/93/1]
gi|261295770|gb|EEX99266.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis B2/94]
gi|261299992|gb|EEY03489.1| DNA polymerase III subunit epsilon [Brucella neotomae 5K33]
gi|261738989|gb|EEY26985.1| DNA polymerase III [Brucella sp. F5/99]
gi|261740965|gb|EEY28891.1| DNA polymerase III subunit epsilon [Brucella suis bv. 5 str. 513]
gi|261745529|gb|EEY33455.1| DNA polymerase III subunit epsilon [Brucella suis bv. 3 str. 686]
gi|262551549|gb|EEZ07539.1| DNA polymerase III subunit epsilon [Brucella ceti M490/95/1]
gi|264659818|gb|EEZ30079.1| DNA polymerase III subunit epsilon [Brucella pinnipedialis
M292/94/1]
gi|294819889|gb|EFG36888.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
gi|297174468|gb|EFH33815.1| DNA polymerase III, epsilon subunit [Brucella abortus bv. 5 str.
B3196]
Length = 234
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 61
Query: 66 QKALRDGVVEAEFSRRIHQFF 86
++ L V I F
Sbjct: 62 EQLLDKPV-----FAEILDEF 77
>gi|332523978|ref|ZP_08400230.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
porcinus str. Jelinkova 176]
gi|332315242|gb|EGJ28227.1| exonuclease DnaQ family/helicase DinG family [Streptococcus
porcinus str. Jelinkova 176]
Length = 820
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 40/194 (20%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLPDPEAVFITGIT 64
D E + D R Q G+ + + I S + K ++ +TGIT
Sbjct: 12 DLEAT--NAGSDARIIQI-GIVIVEDKKIINSFQTDINPHSKLSEHIKS------LTGIT 62
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
Q+ EFS+ + F + C+ +N++FD + +D
Sbjct: 63 DQQLATA----PEFSQVAGEIFELIKDCVFVAHNVKFDANLLSEALFFEGFDLLTPR--- 115
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
+D + F P+ + + L LA + +AH A +D AT
Sbjct: 116 -------VDTVELAQVFFPNLEK----------YNLGHLAKNMDLNLSHAHTAISDALAT 158
Query: 185 LALVWLIREKKPKL 198
L + + K+
Sbjct: 159 ---AKLFIKIQKKI 169
>gi|188533941|ref|YP_001907738.1| ribonuclease T [Erwinia tasmaniensis Et1/99]
gi|188028983|emb|CAO96849.1| Ribonuclease T [Erwinia tasmaniensis Et1/99]
Length = 218
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 45/126 (35%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G D + + A V + W + T F +P + PEA+ GI P
Sbjct: 23 DVETAGFDAKTNALLEIAAVTLKMDNDGWLVKDETLHFHVEPFPGSILLPEALAFNGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E E I + S N ++ +N FD + R RN
Sbjct: 83 ANPLRGAVSEYESLHAIFKLVRKGIKDSGCNRAVMVAHNATFDLNFMNAAAERASLKRNP 142
Query: 115 YDSYRW 120
+ +
Sbjct: 143 FHPFVT 148
>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
Length = 1379
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+VI D ET G + V ++ + + F KP++ + V T IT
Sbjct: 370 YVIVDIETTGLHPMFSEIIEIGAVAIENG-QITDEFHSF-VKPSEKL--NAFTVQFTKIT 425
Query: 65 PQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRN 108
Q +E +F F T + +N FD + R
Sbjct: 426 DQMLANQPSIEEVLPKFM-----EFCKDTTLVA--HNANFDYRFLRY 465
>gi|315646467|ref|ZP_07899585.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
V453]
gi|315278110|gb|EFU41430.1| DnaQ family exonuclease/DinG family helicase [Paenibacillus vortex
V453]
Length = 961
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 35/184 (19%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTE----VFFCKPADDYLPDPEAVFI 60
F + D+ET G + + D Q IE V+ P +
Sbjct: 3 FAVLDFETTG-NQSADEIIQVG-------LAIIEEDRSISRVYGTYVNPGIPIPPFITGL 54
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ +E E + ++G+N + FD + +N R Y +
Sbjct: 55 TGISDSDVADAPSLE-EMMMELVPMLDD--VVLVGHN-VAFDFNFLQNALDRCGYLPF-- 108
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+LD M + I +P +S++L ++ G+EH H A +D
Sbjct: 109 -------SGRILDTM---HFLK---ICFP----SLSSYQLGMVSSHFGLEHDRPHQADSD 151
Query: 181 VYAT 184
AT
Sbjct: 152 ALAT 155
>gi|225853502|ref|YP_002733735.1| DNA polymerase III subunit epsilon [Brucella melitensis ATCC
23457]
gi|256045675|ref|ZP_05448553.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1
str. Rev.1]
gi|256263016|ref|ZP_05465548.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
gi|260562976|ref|ZP_05833462.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
gi|265992096|ref|ZP_06104653.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1
str. Rev.1]
gi|225641867|gb|ACO01781.1| DNA polymerase III, epsilon subunit [Brucella melitensis ATCC
23457]
gi|260152992|gb|EEW88084.1| DNA polymerase III [Brucella melitensis bv. 1 str. 16M]
gi|263003162|gb|EEZ15455.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1
str. Rev.1]
gi|263092889|gb|EEZ17064.1| DNA polymerase III [Brucella melitensis bv. 2 str. 63/9]
gi|326410068|gb|ADZ67133.1| DNA polymerase III subunit epsilon [Brucella melitensis M28]
gi|326539784|gb|ADZ87999.1| DNA polymerase III, epsilon subunit [Brucella melitensis M5-90]
Length = 234
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 61
Query: 66 QKALRDGVVEAEFSRRIHQFF 86
++ L V I F
Sbjct: 62 EQLLDKPV-----FAEILDEF 77
>gi|17988339|ref|NP_540973.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 1
str. 16M]
gi|17984115|gb|AAL53237.1| DNA polymerase iii, epsilon chain [Brucella melitensis bv. 1 str.
16M]
Length = 248
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 18 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 75
Query: 66 QKALRDGVVEAEFSRRIHQFF 86
++ L V I F
Sbjct: 76 EQLLDKPV-----FAEILDEF 91
>gi|160891256|ref|ZP_02072259.1| hypothetical protein BACUNI_03705 [Bacteroides uniformis ATCC 8492]
gi|317481134|ref|ZP_07940210.1| hypothetical protein HMPREF1007_03329 [Bacteroides sp. 4_1_36]
gi|156859477|gb|EDO52908.1| hypothetical protein BACUNI_03705 [Bacteroides uniformis ATCC 8492]
gi|316902699|gb|EFV24577.1| hypothetical protein HMPREF1007_03329 [Bacteroides sp. 4_1_36]
Length = 633
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 43/212 (20%), Positives = 62/212 (29%), Gaps = 46/212 (21%)
Query: 46 KPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
KP D + P A G T A+FS+ F PN G+
Sbjct: 426 KPNGDLMSSPGACEHNGKTYYTFG------AQFSKDYSGFDGTPNCTRTGF--------- 470
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL 165
R F + S D +D A + + L D+A
Sbjct: 471 ----LMRKFLNENLTVTKELQSTTDFMDFRYAEILLNFAEAVVEKGETDGN---LLDMAK 523
Query: 166 --ANGIEHVNAHDAKADVYAT---------LALV-------WLIREKKPKLFEYLYDYRN 207
N + AH +V T + L LIR + F +D R
Sbjct: 524 KGLNDLRKRAAH--TTEVDLTLDNVLRERRIELAFENKGYWDLIRRRD---FHSEFDNRR 578
Query: 208 KNQLRKLIDIQNMTP-LVHVSGMFGASRSNTA 238
K L +ID++ P + V + S T
Sbjct: 579 KMALVPMIDLRGEKPQYIFVRKFVPGANSCTF 610
>gi|291542505|emb|CBL15615.1| DNA polymerase III, epsilon subunit and related 3'-5' exonucleases
[Ruminococcus bromii L2-63]
Length = 296
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 25/200 (12%)
Query: 4 HFVIYDYETFG-----RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV 58
+VI D E G ++ + V++D + ++ + P +
Sbjct: 2 SYVILDLEWNGSYSKVLHKFVNEIIEIGAVKLDDELNVCDTFTML-VAPKIGKKLCSKVK 60
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+T IT ++ +GV F R I FS +G + + N+
Sbjct: 61 QLTKITNEELKDEGVS---FIRAI-SLFSD----FLGDGVLMTWSDSDLHALIENY---- 108
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG--IEHVNAHD 176
S+ G +R L + ++ D + D + L A G + H
Sbjct: 109 --SYYTGRTRLPFLSRYCNLQSYCEDCLDL---HDSSCQLGLGACAEMAGVDFSEDDQHR 163
Query: 177 AKADVYATLALVWLIREKKP 196
A ADVY TL + K P
Sbjct: 164 ALADVYLTLECMKAFYGKYP 183
>gi|28899929|ref|NP_799584.1| putative DNA polymerase III, epsilon subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|260363223|ref|ZP_05776092.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
gi|260880510|ref|ZP_05892865.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AN-5034]
gi|260898537|ref|ZP_05907033.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
Peru-466]
gi|28808212|dbj|BAC61417.1| putative DNA polymerase III, epsilon subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|308085005|gb|EFO34700.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
Peru-466]
gi|308092696|gb|EFO42391.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AN-5034]
gi|308112379|gb|EFO49919.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
Length = 236
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-----PEAV 58
FV D+ET G D D+ V D + I+ + Y+ PE
Sbjct: 51 SFVALDFETTGVDAQGDKILSIGVV--DLTLDGIDIASS-----KEWYICHGQFIKPETA 103
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVP-----NTCI 93
I G+TPQ L G+ E R+ + + CI
Sbjct: 104 KINGLTPQD-LAKGLPLDEGMNRLLKRITGKVVLAHGCCI 142
>gi|332143320|ref|YP_004429058.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
gi|327553342|gb|AEB00061.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
Length = 715
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 34/193 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+V+ D ET G + + +R + V++ ++++ + +P +TGI+
Sbjct: 543 YVVVDIETTGGNNSYNRITEIGMVKL-VGGKEVDRFQTLLN--PQRRIPS-SITRLTGIS 598
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR---NFYDSYRWS 121
+ D + AE + I F + + +N + FD + + F R +F +
Sbjct: 599 -DDMVADAPLFAEVADHIASF--TEDAVFVAHN-VNFDYGFIKQEFARLEQSFRRPKMCT 654
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
G +S+ L +L I+ H A +D
Sbjct: 655 VREMRRTH-----------------------PGLSSYSLANLTKHFHIDMEQHHRALSDA 691
Query: 182 YATLALVWLIREK 194
A L+ L EK
Sbjct: 692 KAAAELLKLAFEK 704
>gi|317178251|dbj|BAJ56040.1| DNA polymerase III subunit epsilon [Helicobacter pylori F16]
Length = 287
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----AELTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L V E + + F N+ + +N FD + F +
Sbjct: 127 AYEDTLNAPSVH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFSIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|110805628|ref|YP_689148.1| ribonuclease T [Shigella flexneri 5 str. 8401]
gi|123147001|sp|Q0T4C2|RNT_SHIF8 RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|110615176|gb|ABF03843.1| RNase T [Shigella flexneri 5 str. 8401]
Length = 215
Score = 39.4 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEICKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|325286963|ref|YP_004262753.1| DNA polymerase III subunit epsilon [Cellulophaga lytica DSM 7489]
gi|324322417|gb|ADY29882.1| DNA polymerase III, epsilon subunit [Cellulophaga lytica DSM 7489]
Length = 221
Score = 39.4 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 24/198 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRV-DRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV+ D ET G DR +++ + +S EVF + D Y + E I G
Sbjct: 35 TFVVLDTETTGFSYQEDRMLCIGALKLKNNDINIGDSFEVFIHQ--DHY--NQETAEIHG 90
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I ++ + E E + + N+ I+ ++ FD + R+ +
Sbjct: 91 IL-KEGKTTRLEELETLKLFLAYL--KNSVIVAHHA-GFDVTFINMALERHSLPKLK--- 143
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
N D + + + + + L +LA I + H A D Y
Sbjct: 144 ---NKILDTSTLYKKT-LIRSNLLV------KKEHYSLDELAEKFSISVKDRHTALGDAY 193
Query: 183 AT-LALVW-LIREKKPKL 198
T +A + L++ K+ K+
Sbjct: 194 ITAIAFLKILVKLKEKKI 211
>gi|224584057|ref|YP_002637855.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224468584|gb|ACN46414.1| ribonuclease T [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
Length = 257
Score = 39.4 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFAGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRI----HQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E E I + I+ +N FD + R RN
Sbjct: 82 PSNPLRGAVSEYEALHAIFKMVRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFVT 148
>gi|297825941|ref|XP_002880853.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297326692|gb|EFH57112.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 223
Score = 39.4 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW 34
V D E G +V +DR + A + D
Sbjct: 47 LVWIDLEMTGLNVEVDRILEIACIITDGNL 76
>gi|194745839|ref|XP_001955392.1| GF18739 [Drosophila ananassae]
gi|190628429|gb|EDV43953.1| GF18739 [Drosophila ananassae]
Length = 187
Score = 39.4 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPD 54
V D E G D D+ + A V D+ I + + + +
Sbjct: 14 IVWMDLEMTGLDFEKDKILELACVITDKDLNVKSEGPCFAINHPQEVYDNMNEWCMKH 71
>gi|302541136|ref|ZP_07293478.1| putative DNA polymerase III epsilon subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302458754|gb|EFL21847.1| putative DNA polymerase III epsilon subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 241
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 15/120 (12%)
Query: 8 YDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGIT 64
+D ET G DV DR A V R ++ V + +P P+ A I G+T
Sbjct: 12 FDTETTGIDVEHDRIVSAALVVQRGAGSLPEVRRWLV-----SPG-IPVPQAATEIHGLT 65
Query: 65 PQKALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
+ G A E +R + + + ++ N FD R+ +
Sbjct: 66 DTHLQQHGRWPAPVMDEVARALAEQTARGTPVVV--MNAPFDLTLLDRELKRHRNATLAT 123
>gi|227501727|ref|ZP_03931776.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
49725]
gi|227077752|gb|EEI15715.1| DNA polymerase III subunit epsilon [Corynebacterium accolens ATCC
49725]
Length = 223
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITP 65
+D ET + R A VR+D R +K+E AD + P+A + GIT
Sbjct: 11 FDLETTSANPKDARIVTSALVRIDGRDVQKVEH-------LADPGIEIPQAATDVHGITT 63
Query: 66 QKALRDGVVEAE----FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNI 109
+KA +G E I + + T I+ YN FD R++
Sbjct: 64 EKAQAEGHPHEEVLKNTVDAIKEAWDDGLTLIV-YNA-AFDLTVLRSL 109
>gi|117619304|ref|YP_856106.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 244
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 20/87 (22%)
Query: 9 DYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVF 59
D ET G + A R + V E I F D L DPEA+
Sbjct: 13 DTETTGMNTAGGPVYLGHRIIEIGCV------EVINRKLTGNHFHVYIKPDRLVDPEAIQ 66
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFF 86
+ GIT + +I F
Sbjct: 67 VHGITDEFLRDKPS-----FSQIADEF 88
>gi|331683160|ref|ZP_08383761.1| ribonuclease T [Escherichia coli H299]
gi|331079375|gb|EGI50572.1| ribonuclease T [Escherichia coli H299]
Length = 215
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHNFMMAAAERASLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|302533719|ref|ZP_07286061.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
gi|302442614|gb|EFL14430.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
Length = 332
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 33/176 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D Q +E P D P +I G+T
Sbjct: 31 DVETTGL-ARDDRIVSAAVYRLDAQGN-VEDHWYTLVNPRRD----PGPTWIHGLTSAML 84
Query: 69 LRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ F+ I + F+ + ++ +N I FD + +
Sbjct: 85 QDAPL----FAD-IAEEFAGRLADRVLVAHNAI-FDWQM------------IAREYARAS 126
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + + I A S + + P + KL+ LA G+ AH A D
Sbjct: 127 ATAPVRQRLCTI-ALSKE-LNLPL-----PNHKLESLAAHYGVVQQRAHHALDDAR 175
>gi|221104221|ref|XP_002161149.1| PREDICTED: similar to Receptor-type tyrosine-protein phosphatase
kappa [Hydra magnipapillata]
Length = 1000
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 391 FSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH---RKKMLTRSRIEEYKNKLQSLSGEY 447
F ++ E+ R NF ++L+++EK+ W L + EY+ +Q L Y
Sbjct: 97 FVGPQIKEVL---RDINFKNSLTDEEKEAWQAFTWVCANFLGNHKSPEYEAGIQELLDSY 153
Query: 448 K 448
+
Sbjct: 154 Q 154
>gi|195447904|ref|XP_002071422.1| GK25788 [Drosophila willistoni]
gi|194167507|gb|EDW82408.1| GK25788 [Drosophila willistoni]
Length = 996
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 288 VPVPIKEVHLNKCPILMPID--------YCKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
P+P ++ + C + + E D ++ E RQ T+L
Sbjct: 345 APIPSRKRAFSVCADVAALQGQQAAGELVHANSDTELSKFDREKTFETAEAYRQTTDLLA 404
Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
+ + D+ LY G+ D +IL +
Sbjct: 405 KVVTALATVKPPPPEADDAALYGGYHGFSD----SQILASEW 442
>gi|90420992|ref|ZP_01228896.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90334770|gb|EAS48546.1| DNA polymerase III, epsilon subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 239
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF--FCKPADDYLPDPEAVFITGI 63
+++D ET G D ++R + GV + W I + + + F +PA + DP A + GI
Sbjct: 4 IVFDTETTGLDPDVERVIEIGGVEL---WNHIPTGKNYHAFIRPAGRKV-DPAAFDVHGI 59
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ + +E + +FFS +N FD + R
Sbjct: 60 SDDFLADKPLF-SEIADEFLEFFSGAKLIA---HNAAFDVRFLNAELKRIDQPPI 110
>gi|46446795|ref|YP_008160.1| DNA polymerase III subunit epsilon [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400436|emb|CAF23885.1| putative DNA polymerase III, epsilon chain, mutD [Candidatus
Protochlamydia amoebophila UWE25]
Length = 216
Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 28/131 (21%)
Query: 55 PEAVFITGITPQKALRDGV---VEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
PE+ I IT + G V AEF F +I +NN FD ++ R+ F
Sbjct: 27 PESTAIHHITDEMVANAGSFADVGAEFV-----EFCAGEVVLIAHNNDNFDLHFLRHEFE 81
Query: 112 RN-FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
RN + W LD ++ + D P LQ L GI
Sbjct: 82 RNQLILP---------THWKFLDSLKWARRYRSDL---PRHT-------LQFLREIYGIT 122
Query: 171 HVNAHDAKADV 181
NAH A DV
Sbjct: 123 ANNAHRALDDV 133
>gi|322381856|ref|ZP_08055810.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
epsilon-like protein [Paenibacillus larvae subsp. larvae
B-3650]
gi|321154244|gb|EFX46566.1| ATP-dependent DNA helicase-like protein/DNA polymerase 3 subunit
epsilon-like protein [Paenibacillus larvae subsp. larvae
B-3650]
Length = 957
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 33/187 (17%)
Query: 34 WEKIESTEV--FFCKP-ADDY-LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP 89
I+ ++ + +P TGIT + VE + ++ S
Sbjct: 29 LVIIDEFDITDRYTSLVNPGVRIPSSITSL-TGITDEMVENAPSVEKVMAD-LYPLLSD- 85
Query: 90 NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP 149
C++ ++ FD + + + Y + +LD + A+ P
Sbjct: 86 --CVLVAHHASFDHAFLQRSLTKAGYPPF---------TGRVLDTIDALRVAFPSL---- 130
Query: 150 SRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
SF+L + GIEH N H A D T L I + KLF
Sbjct: 131 ------GSFQLGHVCSLFGIEHENPHQANCDAQVTAELWIRIMQ---KLFG--LPLLTIQ 179
Query: 210 QLRKLID 216
++ +++D
Sbjct: 180 RISQILD 186
>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
Length = 238
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 60/190 (31%), Gaps = 41/190 (21%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + GV ++ ++ + F + + A+ + G+T +
Sbjct: 7 DTETTGLNPRTGDRILEIGGVELN---NRMLTGNNFHQYINPERDSEEGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIG----YNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+F+ I + F I G +N FD + F R
Sbjct: 64 LSDK----PKFA-EIAEEFR---AFIAGAELIIHNAPFDIGFLNAEFKRLNLPPV-HEQV 114
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDA---- 177
+G ++D + P S L L G+ H H A
Sbjct: 115 HG-----VIDTLVQAKEMHPG---------KRNS--LDALCDRYGVSNAHRKLHGALLDS 158
Query: 178 --KADVYATL 185
ADVY +
Sbjct: 159 ELLADVYLAM 168
>gi|117621372|ref|YP_857935.1| oligoribonuclease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|166215748|sp|A0KNT4|ORN_AERHH RecName: Full=Oligoribonuclease
gi|117562779|gb|ABK39727.1| oligoribonuclease [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 181
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D + + A + D+ +
Sbjct: 5 AQNLVWIDMEMTGLDPEQNVVLEIATIVTDKDLNVLAE 42
>gi|145593678|ref|YP_001157975.1| oligoribonuclease [Salinispora tropica CNB-440]
gi|145303015|gb|ABP53597.1| Exonuclease, RNase T and DNA polymerase III [Salinispora tropica
CNB-440]
Length = 198
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES---TEVFFCKPADDYLPDPEA 57
+ + V D E G D+ D+ + A + D + + + A D +P+ A
Sbjct: 3 VADLLVWIDCEMTGLDLGGDKLIEVAALVTDPDLNVLGEGVDVVIHADEAALDKMPEIVA 62
Query: 58 VFI--TGITPQKALRD-GVVEAEFS--RRIHQFFSVPNTCIIGYNNIRFD 102
+G+T + G+ EAE I P T + N+I D
Sbjct: 63 TMHAKSGLTEEVRRSTIGLAEAEEMVLDYITSHVKDPRTAPLCGNSIATD 112
>gi|72046790|ref|XP_780396.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus
purpuratus]
gi|115956149|ref|XP_001188154.1| PREDICTED: similar to CGI-114 protein [Strongylocentrotus
purpuratus]
Length = 196
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 21/120 (17%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWE--------KIESTEVFFCKPADDYL 52
+ + V D E G D+ + A + D++ I + K D +
Sbjct: 19 LKSRLVWVDLEMTGLDLDTCHIIEMACLITDQELNVVAEGPNIIIHQPDEILDKMNDWCV 78
Query: 53 PD------PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+AV + IT Q+A E E + ++ P C + N+I D +
Sbjct: 79 QHHTASGLVDAVKASKITLQQA------EYEMLSFVR-EYTYPKLCPLAGNSIHVDKTFL 131
>gi|119502786|ref|ZP_01624871.1| oligoribonuclease [marine gamma proteobacterium HTCC2080]
gi|119461132|gb|EAW42222.1| oligoribonuclease [marine gamma proteobacterium HTCC2080]
Length = 182
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + D E G R + A + D ++ V + D L
Sbjct: 4 AQNLIWVDLEMTGLIPEQHRVIEMATIITDSDLNELAQGPVIAIHQSQDEL 54
>gi|154247607|ref|YP_001418565.1| exonuclease RNase T and DNA polymerase III [Xanthobacter
autotrophicus Py2]
gi|154161692|gb|ABS68908.1| Exonuclease RNase T and DNA polymerase III [Xanthobacter
autotrophicus Py2]
Length = 200
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 38/200 (19%)
Query: 5 FVIYDYETFG--------RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD----DYL 52
+ +D ET G A Q A + F D D +
Sbjct: 2 ILFWDTETTGFFDDRLPVDHKAQPYIVQLAAQLCEDD----GRPIAGFSFIIDPGIGDGI 57
Query: 53 PDPE-AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY 111
PE A + GIT ++A++ GV EF+ + +N +FD +
Sbjct: 58 NIPERAAAVHGITNERAVQFGVS-TEFALSAFTHLYQRADMVCAHNA-KFDKGVTETAIS 115
Query: 112 RNF------YDSYRWSWDNGNSRWDLLDV--MRAIYAFSPDGIQWPSRDDGATSFKLQDL 163
R++ + ++ +L MRA P P ++ F +DL
Sbjct: 116 RHYGRVMPLRKPVFCTMESATPIINLPPTDRMRAAGFNKPKP---PKLEECIRHFFGEDL 172
Query: 164 ALANGIEHVNAHDAKADVYA 183
AHDA DV A
Sbjct: 173 --------DGAHDAMVDVAA 184
>gi|313672733|ref|YP_004050844.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
19672]
gi|312939489|gb|ADR18681.1| DNA-directed DNA polymerase [Calditerrivibrio nitroreducens DSM
19672]
Length = 195
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 72/183 (39%), Gaps = 25/183 (13%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITG 62
F++ D ET G + + A +++++ + I F+ +P P A +
Sbjct: 11 FIVIDLETTGISPYKGAKIVEIAALKIEKGLK-INPKNSFYSLVNP-LIPIPYSAYRVHK 68
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I+ + +E + + +F P IIG NI FD + + + + Y+ +
Sbjct: 69 ISNEIVKDYPTIE-KVLPKFLEFLDTP--FIIG-QNISFDYSFIKY--FSDLYNFRLKEF 122
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATS-FKLQDLALANGIEHVNAHDAKADV 181
++D + +P+ + D + F ++++ + + H A D+
Sbjct: 123 I-------IIDTINIAKKIAPNLKR--YNLDNLITYFGIENI-----LGNGKRHRADFDI 168
Query: 182 YAT 184
YAT
Sbjct: 169 YAT 171
>gi|315497459|ref|YP_004086263.1| DNA polymerase iii, epsilon subunit [Asticcacaulis excentricus CB
48]
gi|315415471|gb|ADU12112.1| DNA polymerase III, epsilon subunit [Asticcacaulis excentricus CB
48]
Length = 717
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 32/188 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G A +R + V++ R E I++ + + +P P +TGI+
Sbjct: 549 DIETTGGQSANERVTEIGAVKI-RNGEIIDTWQSLIN--PERRIP-PFITELTGISNAMV 604
Query: 69 LRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
F+ I F T + +N + FD + YR +R+
Sbjct: 605 RDA----PRFAD-IADDFDAFLKGTVFVAHN-VNFDYGFLSAE-YRRLERPFRY------ 651
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLA 186
M + + +P G ++ L L+ GIE N H A +D A
Sbjct: 652 ------PKMCTVASMRR---HFP----GLAAYGLGPLSREFGIELKNHHRALSDAMAAAE 698
Query: 187 LVWLIREK 194
L+ LI E+
Sbjct: 699 LLKLINER 706
>gi|195133598|ref|XP_002011226.1| GI16120 [Drosophila mojavensis]
gi|193907201|gb|EDW06068.1| GI16120 [Drosophila mojavensis]
Length = 1010
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 288 VPVPIKEVHLNKCPILMPIDYCKK-----EHFERWGIDHKRCLENLTLLRQQTNLRDRFK 342
P+P ++ + C + E D ++ E RQ T+L +
Sbjct: 345 APIPSRKRAFSVCAEVAASQDSTAMVHANSDTEISKFDREKTFETAEAYRQTTDLLAKVV 404
Query: 343 AIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAP 381
+ D+ LY G+ D +IL +
Sbjct: 405 TALATVQPPPPEADDAALYGGYHGFSD----SQILASEW 439
>gi|299472868|emb|CBN80437.1| EsV-1-139 [Ectocarpus siliculosus]
Length = 269
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G D + + V DR +I+S + L P ++ + +
Sbjct: 44 FWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRL--------VLHHPHSILLARSS 94
>gi|283833269|ref|ZP_06353010.1| ribonuclease T [Citrobacter youngae ATCC 29220]
gi|291070906|gb|EFE09015.1| ribonuclease T [Citrobacter youngae ATCC 29220]
Length = 215
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 59/191 (30%), Gaps = 38/191 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + S N I+ +N FD + R RN
Sbjct: 82 PNNPLRGAVSEYDALHAIFKMVRKGIKESGCNRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + V A S + G T LA +
Sbjct: 142 PFHPF---------------VTFDTAALSGLSL-------GQTVLSKACLAAGMEFDGNQ 179
Query: 174 AHDAKADVYAT 184
AH A D T
Sbjct: 180 AHSALYDTERT 190
>gi|269977107|ref|ZP_06184081.1| oligoribonuclease [Mobiluncus mulieris 28-1]
gi|307700139|ref|ZP_07637185.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
gi|269934938|gb|EEZ91498.1| oligoribonuclease [Mobiluncus mulieris 28-1]
gi|307614688|gb|EFN93911.1| oligoribonuclease [Mobiluncus mulieris FB024-16]
Length = 208
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-- 58
+T+ V D E G D+A D + + D +++ KP+ L +
Sbjct: 8 LTDALVWVDCEMTGLDLATDELIEIGVIVTDFNLNPLDTGIDLLIKPSQTALDNMGDFVR 67
Query: 59 -FITGITPQKALRDGVVEAEFSRRIHQ 84
T L G+ E +R++ +
Sbjct: 68 EMHTKSGLLDELDHGLPVTEAARQVLE 94
>gi|329942840|ref|ZP_08291619.1| putative membrane protein [Chlamydophila psittaci Cal10]
gi|332287433|ref|YP_004422334.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]
gi|313848013|emb|CBY17010.1| putative lipoprotein [Chlamydophila psittaci RD1]
gi|325506465|gb|ADZ18103.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]
gi|328815100|gb|EGF85089.1| putative membrane protein [Chlamydophila psittaci Cal10]
gi|328914681|gb|AEB55514.1| lipoprotein, putative [Chlamydophila psittaci 6BC]
Length = 925
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 283 ELKGLVPVPIKEVHLNKCPILMPIDY---CKKEHFERWGIDHKRCLENLTLLRQQTNLRD 339
L +P H+NK + + K + R + + L+ ++ ++
Sbjct: 470 NLGSRSVLPSLLAHMNKLSLPSKLKTMEMLKNSLWARDFLTLE-LLKRWSMTTPHPSIAA 528
Query: 340 RFKAIYNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPEL 399
+ + D+ LYD D+ ++ IL +++ +D RL EL
Sbjct: 529 GIHLYFAEHDLLGISDISEDLYD---EPGDK-LLAAILTVRRQEICGQYRDIADARLKEL 584
Query: 400 F 400
Sbjct: 585 L 585
>gi|150377384|ref|YP_001313979.1| DNA polymerase III subunit epsilon [Sinorhizobium medicae WSM419]
gi|150031931|gb|ABR64046.1| Exonuclease RNase T and DNA polymerase III [Sinorhizobium medicae
WSM419]
Length = 308
Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 57/185 (30%), Gaps = 34/185 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFF--CKPADDYLPDPEAVFITG 62
+I D ET G + D + V I + + +P PE +TG
Sbjct: 56 LILDTETTGLNHRKDEIIEIGAVAFTFDDAGNIGDVIDLYGGLQQPSISVP-PEITRLTG 114
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
IT + L + + P II +N FD F F +
Sbjct: 115 ITDEMVLGQKIDLHRLRAVVE-----PADLIIAHNA-GFDRP-----FCEAFSPIFARK- 162
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+A S I WP+R G KL L G H H A D +
Sbjct: 163 ---------------AWACSVSEIDWPAR--GFEGTKLGYLIGQAGYFHEG-HRAVDDCF 204
Query: 183 ATLAL 187
A L +
Sbjct: 205 ALLEV 209
>gi|300722831|ref|YP_003712123.1| RNase T [Xenorhabdus nematophila ATCC 19061]
gi|297629340|emb|CBJ89939.1| RNase T, degrades tRNA, has exonuclease and ssDNAse activity
[Xenorhabdus nematophila ATCC 19061]
Length = 211
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 14/126 (11%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIEST---EVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + F P + DP A+ TGI P
Sbjct: 15 DVETAGFNARTDALLEIAAITLKMDENGWLMPADTLHFHVDPFEGANLDPAALAFTGIDP 74
Query: 66 QKALRDGVVEAEF----SRRIHQFFSVPNT--CIIGYNNIRFDDYYS-----RNIFYRNF 114
LR V E + I + N I+ +N FD + R+ R
Sbjct: 75 TNPLRGAVSEYTALHAIFKMIRKGMKDTNCNRAIMVAHNASFDHNFVMAAAERSGLKRIP 134
Query: 115 YDSYRW 120
+ +
Sbjct: 135 FHPFAT 140
>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
Length = 243
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 9 DYETFGRDVALD-RPAQFAGV-RVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
D ET G D R + V VDR+ + + + DPEA+ + GI
Sbjct: 7 DTETTGIDPRQGHRVIEIGAVELVDREITE-GRYQQY---LNPGRSSDPEALRVHGIRDD 62
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+F+ + F + + +N FD + R +
Sbjct: 63 FLADQ----PDFADIVEDFLAFLGDAELIIHNAPFDLAFLNAELERVGRPAL 110
>gi|171317547|ref|ZP_02906736.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
MEX-5]
gi|171097307|gb|EDT42153.1| Exonuclease RNase T and DNA polymerase III [Burkholderia ambifaria
MEX-5]
Length = 174
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFF-----SVPNTCIIGYNNIRFDDYYSRNI 109
PEA+ +TG++ ++ +DG+ + + + +G N FD +
Sbjct: 53 PEALKVTGLSLERLAKDGLSPGDAMQNFAVWIGLQCTEWELPVFVGLNA-PFDWSFVNYY 111
Query: 110 FYR 112
F+R
Sbjct: 112 FHR 114
>gi|283851810|ref|ZP_06369087.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
gi|283572726|gb|EFC20709.1| DNA polymerase III, epsilon subunit [Desulfovibrio sp. FW1012B]
Length = 249
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 42/202 (20%), Positives = 62/202 (30%), Gaps = 26/202 (12%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI-ESTEVFFCKPADDYLPDPEAVFITGI 63
FV D E G D VR+ R + +P +P +A I +
Sbjct: 49 FVAVDTELTGFDPRRHALVSIGAVRL-RGLSILPGEAFYTLVRP-PAAVPR-DATLIHRL 105
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T AL D AE F ++G++ D F ++
Sbjct: 106 T-GAALADAPPVAEALAAFLDFLG--PAVVVGHH----VD------LDMGFLNAAARRHM 152
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDG-----ATSFKLQDLALANGIEHVNAHDAK 178
G +D +R A + G ++L L G+ AHDA+
Sbjct: 153 GGELAAPCIDTLRLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDAR 212
Query: 179 ADVYAT----LALVWLIREKKP 196
AD AT L L +P
Sbjct: 213 ADALATAYLFLYLARHCGRARP 234
>gi|323163498|gb|EFZ49324.1| ribonuclease T [Escherichia coli E128010]
Length = 215
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFVGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P R V E E I + S N I+ +N FD + R RN
Sbjct: 82 PNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERVSLKRN 141
Query: 114 FYDSYRW 120
+ +
Sbjct: 142 PFHPFAT 148
>gi|294628658|ref|ZP_06707218.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
gi|292831991|gb|EFF90340.1| DNA polymerase III epsilon subunit [Streptomyces sp. e14]
Length = 328
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 47/197 (23%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T +
Sbjct: 27 DVETTGL-ARDDRIISAAVYRLDAR-GEVEDHWYTLVNPERD----PGPVWIHGLTSEAL 80
Query: 69 LRDGVVEA-----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+G EF+ R+ ++ +N + FD +
Sbjct: 81 --EGAPLFTDIAEEFAARLADR------VLVAHNAV-FDWQM------------IAREYA 119
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ + I G+ P+ KL+ LA G+ AH A D
Sbjct: 120 RARREAPVRQRLCTIALSKELGLPLPNH-------KLESLAAHFGVVQRRAHHALDD--- 169
Query: 184 TLALVWLIREK-KPKLF 199
++ E +P L+
Sbjct: 170 ----ARVLAEAFRPSLW 182
>gi|237731384|ref|ZP_04561865.1| ribonuclease T [Citrobacter sp. 30_2]
gi|226906923|gb|EEH92841.1| ribonuclease T [Citrobacter sp. 30_2]
Length = 215
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 59/191 (30%), Gaps = 38/191 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEIAAITLKMDEQGWLMP-DTTLHFHVEPFEGANLQPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFF------SVPNTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + S N I+ +N FD + R RN
Sbjct: 82 PNNPLRGAVSEYDALHAIFKMVRKGIKDSGCNRAIMVAHNATFDHSFMMAAAERASLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + V A S + G T LA +
Sbjct: 142 PFHPF---------------VTFDTAALSGLSL-------GQTVLSKACLAAGMEFDGNQ 179
Query: 174 AHDAKADVYAT 184
AH A D T
Sbjct: 180 AHSALYDTERT 190
>gi|187924944|ref|YP_001896586.1| oligoribonuclease [Burkholderia phytofirmans PsJN]
gi|187716138|gb|ACD17362.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
phytofirmans PsJN]
Length = 203
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 58/209 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + +++ V +D+ L A
Sbjct: 19 NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL----AKMDQWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYS------ 106
G + + V EA+ + +I F SV P + N+I D +
Sbjct: 75 QNTHGRSGLIDRVKASTVSEADAAEQIRDFLSVFVPPGKSPMCGNSICQDRRFMARWMPD 134
Query: 107 --RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIRE 193
G + H A AD++ ++ + RE
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRE 188
>gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
Length = 238
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 54/187 (28%), Gaps = 41/187 (21%)
Query: 9 DYETFGRD----VAL--DRPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPEAVF 59
D ET G + R + V E I F D PEA+
Sbjct: 16 DTETTGMNLEGGPHYMGHRIIEIGAV------EIINRKLTGRHFHVYLKPDREIQPEAIG 69
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+ GIT + + +HQ F ++ +N FD + F D
Sbjct: 70 VHGITDEFLVDKPDY-----SHVHQEFLDFIKGAELVAHNA-PFDTGFMDYEF--EMLDP 121
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAH 175
D+ D L + + I+ P + + L L GI H H
Sbjct: 122 AIGKTDDFCKVTDTLAMAKKIF---------PGKRNN-----LDILCERYGIDNSHRTLH 167
Query: 176 DAKADVY 182
A D
Sbjct: 168 GALLDAE 174
>gi|119961384|ref|YP_948135.1| oligoribonuclease [Arthrobacter aurescens TC1]
gi|119948243|gb|ABM07154.1| putative oligoribonuclease [Arthrobacter aurescens TC1]
Length = 211
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 15/116 (12%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPAD-------DYLPD 54
V D E G D+ D + A + D + + KP D D++ D
Sbjct: 5 NERIVWIDCEMTGLDLTNDALIEVAALVTDSELNILGDGVDVVIKPDDAALEQMNDFVRD 64
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNT----CIIGYNNIRFDDYYS 106
T L G AE ++ ++ +G N++ D +
Sbjct: 65 ----MHTRSKLLDELPHGKTMAEAEAQVLEYIEKWVPDPRKAPLGGNSVGTDRMFL 116
>gi|118464888|ref|YP_880896.1| oligoribonuclease [Mycobacterium avium 104]
gi|254774490|ref|ZP_05216006.1| oligoribonuclease [Mycobacterium avium subsp. avium ATCC 25291]
gi|166216267|sp|A0QDA8|ORN_MYCA1 RecName: Full=Oligoribonuclease
gi|118166175|gb|ABK67072.1| oligoribonuclease [Mycobacterium avium 104]
Length = 215
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D + +
Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGD 39
>gi|41408418|ref|NP_961254.1| oligoribonuclease [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|48428193|sp|P61651|ORN_MYCPA RecName: Full=Oligoribonuclease
gi|41396774|gb|AAS04637.1| hypothetical protein MAP_2320 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 215
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D+ + A + D + +
Sbjct: 1 MRDELVWIDCEMTGLDLGSDKLIEIAALVTDAELNVLGD 39
>gi|326527927|dbj|BAJ89015.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 259
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQW-EKIESTEVF 43
V D E G D+ DR + A + D + ++IE ++
Sbjct: 71 LVWIDLEMTGLDIRKDRILEIACIITDGKLTKRIEGPDLV 110
>gi|13242610|ref|NP_077624.1| EsV-1-139 [Ectocarpus siliculosus virus 1]
gi|13177413|gb|AAK14557.1|AF204951_139 EsV-1-139 [Ectocarpus siliculosus virus 1]
Length = 274
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF 59
D ET G D + + V DR +I+S + L P ++
Sbjct: 44 FWIDMETTGLDTDTNLILEIVMVVTDRDLNEIDSMRL--------VLHHPHSIL 89
>gi|82523686|emb|CAI78468.1| Rad3-related DNA helicases [uncultured candidate division WS3
bacterium]
Length = 965
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAV 58
FV D ET G D +DR + VRV ++ E F C D +
Sbjct: 25 PRTFVGLDLETTGVDSRVDRIIEVGAVRV-VDGRVADTFESFVNPGCPIPSDIV------ 77
Query: 59 FITGIT 64
+TGI+
Sbjct: 78 HLTGIS 83
>gi|295394431|ref|ZP_06804655.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
gi|294972783|gb|EFG48634.1| oligoribonuclease [Brevibacterium mcbrellneri ATCC 49030]
Length = 200
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA 48
+ V D E G ++ +D + A + D ++ KP+
Sbjct: 4 DKIVWIDCEMTGLELEVDELIEVAAIVTDFDLNPVDEGVDVIIKPS 49
>gi|306829204|ref|ZP_07462394.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
ATCC 6249]
gi|304428290|gb|EFM31380.1| DnaQ family exonuclease/DinG family helicase [Streptococcus mitis
ATCC 6249]
Length = 830
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 49/224 (21%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI 60
+ +V+ D E + + Q G+ V E ++ A D P P I
Sbjct: 6 NDRYVVVDLEATSTG-SKAKIIQV-GIVVIENGEIVDQY-------ATDVNPHEPLDSHI 56
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFY 115
TG+T Q+ EFS+ + F V + + +N ++FD + + +F+ +
Sbjct: 57 KELTGLTDQRLAAA----PEFSQVAGKIFELVKDGVFVAHN-VQFDANLLAEFLFFEGYE 111
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P + L L GIE AH
Sbjct: 112 LRTPR-----------VDTVELAQVLYPQ----------FEKYNLGILCQELGIELEQAH 150
Query: 176 DAKADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQN 219
A +D AT L+ +R+K +L K L L+D+ +
Sbjct: 151 TALSDAQATAELLLYMRQKLFEL--------PKGLLESLLDLAD 186
>gi|167462331|ref|ZP_02327420.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 816
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 33/187 (17%)
Query: 34 WEKIESTEV--FFCKP-ADDY-LPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVP 89
I+ ++ + +P TGIT + VE + ++ S
Sbjct: 29 LVIIDEFDITDRYTSLVNPGVRIPSSITSL-TGITDEMVENAPSVEKVMAD-LYPLLSD- 85
Query: 90 NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWP 149
C++ ++ FD + + + Y + +LD + A+ P
Sbjct: 86 --CVLVAHHASFDHAFLQRSLTKAGYPPF---------TGRVLDTIDALRVAFPSL---- 130
Query: 150 SRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPKLFEYLYDYRNKN 209
SF+L + GIEH N H A D T L I + KLF
Sbjct: 131 ------GSFQLGHVCSLFGIEHENPHQANCDAQVTAELWIRIMQ---KLFG--LPLLTIQ 179
Query: 210 QLRKLID 216
++ +++D
Sbjct: 180 RISQILD 186
>gi|297581761|ref|ZP_06943683.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297534168|gb|EFH73007.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 209
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 24/177 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET D A + VD + + EV C P D +V I I Q
Sbjct: 34 DCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRIRHQD 90
Query: 68 ALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
DG+ E E + I + P ++GY+ IR+D ++ N
Sbjct: 91 LH-DGLSEKEALIQLIEFIGNRP---LVGYH-IRYDKTILDIACRKHLGFPLP------N 139
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
L++V + + + D L+ + + + HDA D A
Sbjct: 140 R---LIEVSQIYHDKLEKHLPNAYFD-----LSLEAICRHLDLPLQDKHDALQDAIA 188
>gi|91794560|ref|YP_564211.1| oligoribonuclease [Shewanella denitrificans OS217]
gi|123165774|sp|Q12J88|ORN_SHEDO RecName: Full=Oligoribonuclease
gi|91716562|gb|ABE56488.1| Exonuclease [Shewanella denitrificans OS217]
Length = 181
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
N+ + D E G + +D + A + D + +
Sbjct: 5 ANNLIWIDLEMTGLEPEVDVVIEIATLVTDSELNIL 40
>gi|91784777|ref|YP_559983.1| oligoribonuclease [Burkholderia xenovorans LB400]
gi|122970228|sp|Q13VF8|ORN_BURXL RecName: Full=Oligoribonuclease
gi|91688731|gb|ABE31931.1| Oligoribonuclease [Burkholderia xenovorans LB400]
Length = 207
Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 58/209 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + +++ V +D+ L A
Sbjct: 19 NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL----AGMDQWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------Y 104
G + + V EA+ + +I F SV P + N+I D
Sbjct: 75 QNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPE 134
Query: 105 YSRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIRE 193
G + H A AD++ ++ + RE
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRE 188
>gi|225419839|ref|ZP_03762142.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
DSM 15981]
gi|225041521|gb|EEG51767.1| hypothetical protein CLOSTASPAR_06180 [Clostridium asparagiforme
DSM 15981]
Length = 255
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRV 30
+TN +V D ET G + LD+ + A +RV
Sbjct: 12 VTNSYVAIDIETTGLEPRLDKITEIAALRV 41
>gi|84494356|ref|ZP_00993475.1| oligoribonuclease [Janibacter sp. HTCC2649]
gi|84383849|gb|EAP99729.1| oligoribonuclease [Janibacter sp. HTCC2649]
Length = 226
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
T+ V D E G + D + A + D + + KP D+ L
Sbjct: 13 TDRIVWIDCEMTGLSLENDALVEVAALVTDFELNILGDGVDVVIKPTDEAL 63
>gi|261840222|gb|ACX99987.1| DNA polymerase III subunit epsilon [Helicobacter pylori 52]
Length = 323
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 39/186 (20%), Positives = 56/186 (30%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 109 FSFIDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----TELTGI 162
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L V E + + F N+ + +N FD + F +
Sbjct: 163 AYEDTLNAPSVH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 212
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 213 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 256
Query: 182 YATLAL 187
A+ L
Sbjct: 257 LASYKL 262
>gi|47209290|emb|CAF89573.1| unnamed protein product [Tetraodon nigroviridis]
Length = 832
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 24/111 (21%)
Query: 140 AFSPDGIQW--PSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK 197
AFSPDG +W + DDG KL DL I AH A +V + P
Sbjct: 195 AFSPDG-KWLASASDDGTV--KLWDLMQGKTITEFTAHTAAVNVV----------QFNPN 241
Query: 198 LFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVAWHPR 248
EYL + ++ KL D++ M G+ N + + + P
Sbjct: 242 --EYLLASGSSDRSVKLWDLEKFK-------MIGSLEGNATPVRCICFSPD 283
>gi|327307324|ref|XP_003238353.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
gi|326458609|gb|EGD84062.1| RNA exonuclease Rex2 [Trichophyton rubrum CBS 118892]
Length = 188
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES--TEVFFCKPAD 49
++ V D E G D A D Q D Q +E E +P D
Sbjct: 7 SDPLVWIDCEMTGLDPANDHILQICCYITDVQLNLLEPEGFEAIVHQPQD 56
>gi|331266715|ref|YP_004326345.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
gi|326683387|emb|CBZ01005.1| ATP-dependent helicase DinG [Streptococcus oralis Uo5]
Length = 830
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 42/203 (20%), Positives = 73/203 (35%), Gaps = 41/203 (20%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI 60
+ +V+ D E + + Q G+ V + I+ A D P P I
Sbjct: 6 NDRYVVVDLEATSTG-SKAKIIQV-GIVVIENGDIIDQY-------ATDVNPHEPLDSHI 56
Query: 61 ---TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFY 115
TG+T Q+ EFS+ + F V + + +N ++FD + + +F+ +
Sbjct: 57 KELTGLTDQRLAAA----PEFSQVAGKIFELVKDGIFVAHN-VQFDANLLAEFLFFEGYE 111
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+D + P + L L GIE +AH
Sbjct: 112 LRTPR-----------VDTVELAQVLYPQ----------FEKYNLGILCQELGIELEHAH 150
Query: 176 DAKADVYATLALVWLIREKKPKL 198
A +D AT L+ +R+K +L
Sbjct: 151 TALSDAQATAELLLYMRQKLFEL 173
>gi|29828689|ref|NP_823323.1| DNA polymerase III subunit epsilon [Streptomyces avermitilis
MA-4680]
gi|29605793|dbj|BAC69858.1| putative DNA polymerase III epsilon subunit [Streptomyces
avermitilis MA-4680]
Length = 240
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 8/114 (7%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D R A + V Q E + E +AV + GIT ++
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVKGQ-EPVGRREWLA---DPGVEIPADAVAVHGITNER 66
Query: 68 ALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
A +G + + Q ++ YN FD R S
Sbjct: 67 AAAEGGPPDRVAESLAQTLVGYWRTGVPVVAYNA-TFDLTLLSAELRRYGLPSL 119
>gi|221213533|ref|ZP_03586507.1| oligoribonuclease [Burkholderia multivorans CGD1]
gi|221166322|gb|EED98794.1| oligoribonuclease [Burkholderia multivorans CGD1]
Length = 211
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + E
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51
>gi|126734517|ref|ZP_01750263.1| exonuclease, putative [Roseobacter sp. CCS2]
gi|126715072|gb|EBA11937.1| exonuclease, putative [Roseobacter sp. CCS2]
Length = 461
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVR 29
FV++D ET G D D Q VR
Sbjct: 272 TFVVFDSETTGLDPQKDDVVQLGAVR 297
>gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
gi|237875965|gb|ACR28298.1| DNA polymerase III, epsilon subunit [Burkholderia glumae BGR1]
Length = 240
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 52/175 (29%), Gaps = 27/175 (15%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARAGDRIIEIGCVEM-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + F II +N FD + R NG
Sbjct: 64 LSDK--PKFAEIAQALCDFVRGGELII--HNAPFDIGFIDAELERLGMPPLL-EHCNG-- 116
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
++D + + P S L L GI H H A D
Sbjct: 117 ---VIDTLVQAKSMFPG---------KRNS--LDALCDRFGISNAHRTLHGALLD 157
>gi|207725335|ref|YP_002255731.1| oligoribonuclease protein [Ralstonia solanacearum MolK2]
gi|206590571|emb|CAQ37533.1| oligoribonuclease protein [Ralstonia solanacearum MolK2]
Length = 185
Score = 39.0 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
E G DR + A V D + + V +D+ L
Sbjct: 2 EMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQSDEIL 43
>gi|294339674|emb|CAZ88034.1| putative protein fusion of DNA polymerase III, epsilon subunit and
Excinuclease ABC, C subunit [Thiomonas sp. 3As]
Length = 469
Score = 39.0 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP--ADDYLPDPEAV 58
M +V+ D ET G + LDR + A +RV++ + + +P P
Sbjct: 1 MLPCYVLLDLETTGSNPVLDRITEVAVMRVEQ-----GEVVAKWSRLVNPGQRIP-PFIQ 54
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI A+ G F + + + + ++ +N+RFD + + R D
Sbjct: 55 QLTGI--DDAMVAGAP--AFGEVLPELLAALDGAVLVAHNVRFDHGFLKQAAAREGVD 108
>gi|295677150|ref|YP_003605674.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
Length = 244
Score = 39.0 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 56/180 (31%), Gaps = 31/180 (17%)
Query: 6 VIYDYETFGRDVA-LDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I D ET G + DR + V + + F+ P D DP A+ + G+T
Sbjct: 4 LILDTETTGLNARGGDRILELGCVEL-VNRRLTGNNLHFYINPERD--SDPGALAVHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQF--FSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ +F+ I QF F II +N FD + F
Sbjct: 61 TEFLSDK----PKFAEIIDQFRDFIQGADLII--HNAPFDIGFLDAEFALLGLPPVSTH- 113
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
+++D + P S L L GI H H A D
Sbjct: 114 -----CGEIIDTLAQAKQMFPG---------KRNS--LDALCDRFGISNAHRTLHGALLD 157
>gi|326385547|ref|ZP_08207181.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
gi|326209881|gb|EGD60664.1| transposase [Novosphingobium nitrogenifigens DSM 19370]
Length = 307
Score = 39.0 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
P V I GIT + DG E F IH + + FD +
Sbjct: 77 PFNVAIHGITADRV--DG--EPTFDD-IHGIVDAHLRGRVTVAHSLFDKSALAAACGVSG 131
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
W LD +R + WP S +L LA GIEH +
Sbjct: 132 QPVIETEW---------LDSVRVA------KLAWPQ----LQSHRLNVLARFLGIEHRH- 171
Query: 175 HDAKADVYA 183
HDA +D A
Sbjct: 172 HDALSDARA 180
>gi|71066188|ref|YP_264915.1| ribonuclease T [Psychrobacter arcticus 273-4]
gi|71039173|gb|AAZ19481.1| RNAse T [Psychrobacter arcticus 273-4]
Length = 239
Score = 39.0 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 68/204 (33%), Gaps = 33/204 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKI---ESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + V + + +P + +P A+ TGI P
Sbjct: 39 DVETAGFNAQTDALLEIACIPVLMNEQGVFYPGEALNAHIEPFEGANLEPSALAFTGIDP 98
Query: 66 QKALRDGVVEAE--FSRRIHQFFSV-------PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
LR + E E RRI + +IG+N FD + R +
Sbjct: 99 NNPLRKAIAEDEKTALRRIFKGLKEVRRNEDCRQCVLIGHNA-HFDLAFLNAAVLRT--N 155
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNA 174
+ + + S +D + + + G T L A G++ +A
Sbjct: 156 NKSHNPFHNFSVFDTVTLSALAF--------------GQTV--LARACKAAGLDFDGNDA 199
Query: 175 HDAKADVYATLALVWLIREKKPKL 198
H A D T L I P L
Sbjct: 200 HSALYDTQKTAELFCYILNNYPML 223
>gi|297571370|ref|YP_003697144.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
gi|296931717|gb|ADH92525.1| 3'-5' exonuclease [Arcanobacterium haemolyticum DSM 20595]
Length = 398
Score = 39.0 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 290 VPIKEVHLNKCPI--LMPIDYCKKEHFERWGIDHKRCLENLTLL--RQQTNLRDRFKAIY 345
+P + NK P + D + E ERW I LE L RQ+ L+ R +
Sbjct: 303 LPERRFFYNKDPFPPVQRWDKLRPEAAERWNIVRTTVLETAEKLGIRQEVLLKPRVQKQL 362
Query: 346 NKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLST 386
+DG+ + D + P Q++
Sbjct: 363 A--------------WDGWESPQDIPRVLETHGARPWQIAH 389
>gi|307109864|gb|EFN58101.1| hypothetical protein CHLNCDRAFT_142424 [Chlorella variabilis]
Length = 236
Score = 38.6 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 39/202 (19%)
Query: 11 ETFGRDVAL----DRPAQFAGVRVDRQ------WEKIESTE----VFFCKPADDYLPDPE 56
E+ G A D + D ++ E F+ +P +
Sbjct: 11 ESVGMQPARYYCID--VECVATGTDHNSRSVGQISLVDEHERVLCNFYVRPDQPVVSYLT 68
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+ TG+T Q + G+ A+ + Q P+T + NI D + + +
Sbjct: 69 PL--TGLTAQLLAQHGMPLAQAVALLQQCL--PSTATLVGQNIAKD---VQWLGLKEGQH 121
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALA--NGIEHVNA 174
+ SW DL + R W ++ + F LA N V
Sbjct: 122 FEQASW----GMMDLTGLFR----------VWNTQYKSWSVFGQDHLAKVLLNWDTSVGG 167
Query: 175 HDAKADVYATLALVWLIREKKP 196
HDA D ++ L L ++ +P
Sbjct: 168 HDAVGDALKSIRLFKLYQQLQP 189
>gi|302671779|ref|YP_003831739.1| glycosyl transferase [Butyrivibrio proteoclasticus B316]
gi|302396252|gb|ADL35157.1| glycosyl transferase [Butyrivibrio proteoclasticus B316]
Length = 307
Score = 38.6 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 401 FRYRA---RNFPHTLSEKEKQDWL--EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEG 455
FR+ R F + LS++E HR + L + KLQ L + E +
Sbjct: 16 FRWIYLGRREFFNYLSDEEFIRRKFWHHRHRKLDLENPRSFSEKLQWLKLYNQKPEYGQM 75
Query: 456 LINA-LYEYLQWVIPK 470
+ A + +Y+ ++P
Sbjct: 76 VDKASVKDYVSSIVPD 91
>gi|161525395|ref|YP_001580407.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
gi|189349868|ref|YP_001945496.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
gi|221201292|ref|ZP_03574332.1| oligoribonuclease [Burkholderia multivorans CGD2M]
gi|221206254|ref|ZP_03579267.1| oligoribonuclease [Burkholderia multivorans CGD2]
gi|160342824|gb|ABX15910.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
multivorans ATCC 17616]
gi|189333890|dbj|BAG42960.1| oligoribonuclease [Burkholderia multivorans ATCC 17616]
gi|221173563|gb|EEE05997.1| oligoribonuclease [Burkholderia multivorans CGD2]
gi|221179142|gb|EEE11549.1| oligoribonuclease [Burkholderia multivorans CGD2M]
Length = 211
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + E
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51
>gi|89890830|ref|ZP_01202339.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
gi|89516975|gb|EAS19633.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
Length = 453
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 64/190 (33%), Gaps = 28/190 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+ I D ET G + + A + D E ++ + P V +TGI
Sbjct: 2 YAIVDVETTGGKFNEEGITEIAIYKFDGH-EIVDQFASL---VNPEKEIQPFVVKLTGIN 57
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
K L E ++RI + T ++ +N FD R F R Y+ +
Sbjct: 58 -NKMLARAPKFYEVAKRIIEIMQ--GTVLVAHNA-NFDYRMLRIEFERLGYE--FHTQT- 110
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
L + P+ S+ L L + GI + H A D AT
Sbjct: 111 -------LCTVELAQQLMPEE----------ESYSLGKLTRSLGIPITDRHRATGDALAT 153
Query: 185 LALVWLIREK 194
+ L ++ K
Sbjct: 154 VKLFKMLMAK 163
>gi|88808413|ref|ZP_01123923.1| Exonuclease [Synechococcus sp. WH 7805]
gi|88787401|gb|EAR18558.1| Exonuclease [Synechococcus sp. WH 7805]
Length = 272
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 60/191 (31%), Gaps = 51/191 (26%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAV 58
+ +I D ET G D D+ + + + +V C D P A
Sbjct: 41 PSRLLIVDTETTGLDADRDQCLEVGAI-----LFSVPHRQVLAQMSCLLPVDSNP---AE 92
Query: 59 FITGITPQKALR------DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
I I P + R DG+ + + ++ +N FD R F R
Sbjct: 93 SINRI-PAEVSRVEQPWGDGLA-------WFERMMMSADYLVAHNA-AFD----RQWFGR 139
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPS--RDDGATSFKLQDLALANGIE 170
+ W + D I+WP S + DLALA GI
Sbjct: 140 GALPEAKRPWL--CTLED---------------IRWPEARNLKARPS--VIDLALAYGIP 180
Query: 171 HVNAHDAKADV 181
+AH A D
Sbjct: 181 VWSAHRALTDC 191
>gi|198282567|ref|YP_002218888.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667091|ref|YP_002424758.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247088|gb|ACH82681.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218519304|gb|ACK79890.1| ribonuclease T [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 201
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 43/195 (22%), Positives = 62/195 (31%), Gaps = 41/195 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIE------STEV---FFCKPADDYLPDPEAVF 59
D ET G D + + A + I F +P + DP A+
Sbjct: 17 DVETAGFDSERNALLEVAAI-------IIGGEVGQLRPVATHHFQVQPFAGAVLDPAALA 69
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVP-------NTCIIGYNNIRFDDYYSRNIFYR 112
TGI P +ALR V E E R I + ++G+N FD + + R
Sbjct: 70 FTGIDPFQALRGAVSEEEALRGIFRPVRTAVKVAQCRRAILVGHNA-AFDLSFIKAAEKR 128
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
+ + S +D + + Y G T LA +H
Sbjct: 129 TGVKNNPFHLF---STFDTVSLAGLAY--------------GETVLAKAALAAGLDWDHT 171
Query: 173 NAHDAKADVYATLAL 187
AH A D T L
Sbjct: 172 QAHSALYDARQTAEL 186
>gi|26554402|ref|NP_758336.1| DNA polymerase III [Mycoplasma penetrans HF-2]
gi|26454412|dbj|BAC44740.1| probable DNA polymerase III [Mycoplasma penetrans HF-2]
Length = 357
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 33/180 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V D E + R QF +++ + + + +FC P P + I
Sbjct: 10 IVFVDIE---ANDKPKRILQFGAIKIKKNGDI--DKKNWFCNPKCKITPHIYKIVSRNI- 63
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
K + G+ + +IH++ + N+ +I Y FD + N+ R ++ +
Sbjct: 64 --KKIDKGMSHIRITEKIHKYLN--NSVLISYG--AFDYNFLNNMCKRIIKKKLNVTYID 117
Query: 125 GNSRWDLLDVMRAIYAFSP--DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
W + + + ++A + + + + HDA D +
Sbjct: 118 LQEEWRKISMTKEVWALNKLANFLNVEVNEKE-------------------LHDAYYDAF 158
>gi|27904678|ref|NP_777804.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
gi|29611836|sp|P59497|RNT_BUCBP RecName: Full=Ribonuclease T; AltName: Full=Exoribonuclease T;
Short=RNase T
gi|27904075|gb|AAO26909.1| ribonuclease T [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
Length = 217
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 57/185 (30%), Gaps = 20/185 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ---WEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G + D + A + + + E F +P D +A+ GI P
Sbjct: 23 DIETAGFNPETDAILEIAIITLKMNEFGLLEKEHLLHFHIQPFKGSRIDKKAIEFHGIDP 82
Query: 66 QKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFY-RNFYDSYRWSWDN 124
LR + E E I I NN + N + NF +
Sbjct: 83 FSPLRRAISEYEALYSIFNLIHK----GIKSNNCTKSIIVAHNAIFDYNFLTAAITRTKI 138
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKADVY 182
N+ + + G+ G T L A G+ ++ AH A D
Sbjct: 139 KNNPFHSFVIFDTATL---SGLAV-----GQTV--LARACKAIGLTFDNNQAHSALYDTQ 188
Query: 183 ATLAL 187
T L
Sbjct: 189 QTANL 193
>gi|150015899|ref|YP_001308153.1| exonuclease, RNase T and DNA polymerase III [Clostridium
beijerinckii NCIMB 8052]
gi|149902364|gb|ABR33197.1| Exonuclease, RNase T and DNA polymerase III [Clostridium
beijerinckii NCIMB 8052]
Length = 209
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 41/197 (20%), Positives = 70/197 (35%), Gaps = 37/197 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITGI 63
+ +D ET Q + + VD + I + + FF D + DP A I G
Sbjct: 3 LLFFDTETTSIKPG--SICQLSYITVDASTKPQITTGKNFF--FTVDEM-DPSAKEIHGF 57
Query: 64 TPQKA--LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
+ +K L DG + + F + +IG+N + FD + ++ D Y +
Sbjct: 58 SLEKLYELSDGQYFEDLVPEFLEDFMTAD-FLIGHN-VNFDVRFLKHELLSLGEDFYPKN 115
Query: 122 WDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDL-----ALANGIE------ 170
+ A+ D + P + + KL ++ +N I
Sbjct: 116 -------------VFCTMAYYRDICKIPKANGEIKNPKLSEVIDWLNISSNQIVETSEKL 162
Query: 171 ---HVNAHDAKADVYAT 184
N HDA+ D AT
Sbjct: 163 FEGSGNYHDARFDTAAT 179
>gi|237640346|ref|YP_002891201.1| exonuclease family protein [Escherichia coli]
gi|229561565|gb|ACQ77768.1| exonuclease family protein [Escherichia coli]
Length = 289
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 48/206 (23%), Positives = 69/206 (33%), Gaps = 28/206 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFITGITPQK 67
D ET G D+ + A D V C + DP+A+ + GIT +
Sbjct: 110 DTETTGLG-ERDQVIELA--VTDI------RGAVLLCTRLRPTVEIDPQAMGVHGITETE 160
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + + + + S + I N FD R F D W W N
Sbjct: 161 LSNEPTW-TQVAPALARLLSGRHLVIF---NPSFDSRMLRQT-ASAFGDQLSW-WQEQNC 214
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLA 186
L + A AF + G S L D G+ AH A D AT
Sbjct: 215 ---LCAMKLAADAFGS------TNRHGTIS--LADATCEAGVSWKGRAHSAATDAIATAD 263
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLR 212
LV I + + L L + ++K L
Sbjct: 264 LVTEIAKVQRDLVVQLQELQSKGNLE 289
>gi|188528322|ref|YP_001911009.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
gi|188144562|gb|ACD48979.1| DNA polymerase III subunit epsilon [Helicobacter pylori Shi470]
gi|308064307|gb|ADO06194.1| DNA polymerase III subunit epsilon [Helicobacter pylori Sat464]
Length = 287
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 55/186 (29%), Gaps = 35/186 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF-CKPADDYLPDPEAVFITGI 63
F D ET G + V+V E I E K DY+ +TGI
Sbjct: 73 FSFIDLETTGSCPLKHEILEIGAVQVKGG-EIINRFETLVKVKSVPDYI-----TELTGI 126
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ L E + + F N+ + +N FD + F +
Sbjct: 127 AYEDTLNAPSAH-EALQELRLFLG--NSVFVAHNA-NFDYNFLGRYFVEKLHCP------ 176
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADV 181
LL++ S I S + L L G +H A AD
Sbjct: 177 -------LLNLKLCTLDLSKRAI---------LSMRYSLSFLKELLGFGIEVSHRAYADA 220
Query: 182 YATLAL 187
A+ L
Sbjct: 221 LASYKL 226
>gi|116255734|ref|YP_771567.1| DNA polymerase III subunit epsilon [Rhizobium leguminosarum bv.
viciae 3841]
gi|115260382|emb|CAK03486.1| putative exonuclease/polymerase [Rhizobium leguminosarum bv. viciae
3841]
Length = 326
Score = 38.6 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 46/219 (21%), Positives = 71/219 (32%), Gaps = 44/219 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFF------CKPADDYLPDPEAV 58
VI D ET G + D + V I + +P PE
Sbjct: 75 VILDTETTGLNHRNDEIIEIGAVAFTFDDDGAIGDIVGIYGGLQQPSRPIP-----PEIT 129
Query: 59 FITGITPQKALRDGVVEAEFSR-RIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGIT D +VE + + + P II +N F R F ++
Sbjct: 130 RLTGIT------DAMVEGQLIDIQSLRTLIEPADLIIAHNA----------GFDRPFCEA 173
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ + +A S I W +R G KL L G H H A
Sbjct: 174 FSKIFTGK------------AWACSVSEIDWSAR--GFEGTKLGYLVGQAGYFHEG-HRA 218
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLID 216
D +A L ++ + F LY ++++R +
Sbjct: 219 VDDCHALLEILDREQRDGESPFTELYRASQRSRIRIFAE 257
>gi|311279484|ref|YP_003941715.1| ribonuclease T [Enterobacter cloacae SCF1]
gi|308748679|gb|ADO48431.1| ribonuclease T [Enterobacter cloacae SCF1]
Length = 217
Score = 38.6 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 60/205 (29%), Gaps = 38/205 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQ----WEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A + + ++T F +P + PEA+ GI
Sbjct: 23 DVETAGFNAKTDALLEVAAITLKMDEQGWLMP-DTTLHFHVEPFEGANLMPEALAFNGID 81
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVP------NTCIIGYNNIRFDDYYS-----RNIFYRN 113
P LR V E + I + N I+ +N FD + R RN
Sbjct: 82 PSNPLRGAVSEYDALHAIFKAVRKGIKDQNCNRAIMVAHNATFDHSFVMAAAERAGLKRN 141
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
+ + L + S I DG
Sbjct: 142 PFHPFVTF-----DTAALSGLALGQTVLSKACIAAGMAFDG-----------------AQ 179
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D T L I + +L
Sbjct: 180 AHSALYDTEQTAQLFCEIVNRWKRL 204
>gi|256787574|ref|ZP_05526005.1| oligoribonuclease [Streptomyces lividans TK24]
Length = 196
Score = 38.6 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
V D E G ++ D + A + D + + +P + L
Sbjct: 2 VWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERAL 48
>gi|238026568|ref|YP_002910799.1| oligoribonuclease [Burkholderia glumae BGR1]
gi|237875762|gb|ACR28095.1| Oligoribonuclease (3'-5' exoribonuclease) [Burkholderia glumae
BGR1]
Length = 202
Score = 38.6 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 50/205 (24%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP--DPEAVFIT 61
+ V D E G + DR + A V + +K V +D+ L D
Sbjct: 19 NLVWLDMEMTGLNPDSDRIIEIAVVVTNSTLDKAVEGPVLAIHQSDETLAKMDAWNQSTH 78
Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDD--------YYSRN 108
G + + V EA + +I F + P + N+I D R
Sbjct: 79 GRSGLIDRVRASTVSEAAAAAQIEAFLAQYVSPGKSPMCGNSICQDRRFMARWMPELERF 138
Query: 109 IFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
YRN D+ + + P + G
Sbjct: 139 FHYRNL---------------DVSTLKELCRRWQPAVYK--------------------G 163
Query: 169 IEHVNAHDAKADVYATLALVWLIRE 193
+ H A AD++ ++ + RE
Sbjct: 164 FQKRAMHTALADIHESIDELKYYRE 188
>gi|289428666|ref|ZP_06430349.1| exonuclease [Propionibacterium acnes J165]
gi|289158064|gb|EFD06284.1| exonuclease [Propionibacterium acnes J165]
Length = 223
Score = 38.6 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
+ + V D E G D+A D + A + D Q KP +L
Sbjct: 19 VKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDH 72
>gi|254519816|ref|ZP_05131872.1| exonuclease [Clostridium sp. 7_2_43FAA]
gi|226913565|gb|EEH98766.1| exonuclease [Clostridium sp. 7_2_43FAA]
Length = 209
Score = 38.6 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 43/203 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK---IESTEVFFCKPADDYLPDPEAVFIT 61
+ +D ET Q + + +D + I F D+ A I
Sbjct: 3 LLFFDTETTSIKPGN--ICQLSYIVIDASVKPQKTIGKNFFFTVDSMDE-----GAEAIH 55
Query: 62 GITPQKALRDGVVEA-EFSRRIHQFFSV--PNTCIIGYNNIRFDDYYSRN---IFYRNFY 115
G + +K + E EF +H+F IIG+N ++FD + ++ +
Sbjct: 56 GFSLEKLYD--LSEGKEFLDCVHEFMPDFFDADFIIGHN-VQFDIKFLKHELQQLWEAGL 112
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL-----------QDLA 164
+W+ N Y SP + PS + KL +
Sbjct: 113 --IDTTWEPKN------TFCTMAYYKSPCNLPSPSGNIKNP--KLAEVIDFLQISEDQIT 162
Query: 165 -LANGI--EHVNAHDAKADVYAT 184
AN + N HDA+ D AT
Sbjct: 163 NKANELFEGSGNYHDARFDTAAT 185
>gi|167586566|ref|ZP_02378954.1| oligoribonuclease [Burkholderia ubonensis Bu]
Length = 206
Score = 38.6 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + E
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLEI 51
>gi|269837944|ref|YP_003320172.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
thermophilus DSM 20745]
gi|269787207|gb|ACZ39350.1| Exonuclease RNase T and DNA polymerase III [Sphaerobacter
thermophilus DSM 20745]
Length = 197
Score = 38.6 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 42/183 (22%), Positives = 54/183 (29%), Gaps = 38/183 (20%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT- 64
+ D ET G D + A V D Q + T V +P PE I GIT
Sbjct: 25 LFLDTETTGLD-GQAEIVEIAVV--DAQGTVLLDTLVRPLRPIP-----PEVQAIHGITD 76
Query: 65 --PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
A R V AE R + P + N FD ++ W
Sbjct: 77 RMVAGAPRWPEVHAELVRLFRE---RPRAVVY---NAAFDRRVIAQTAQQHCLPPPTAEW 130
Query: 123 DNGNSRWDLLDVMRAIYA--FSP--DGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ + A YA P +W +L A A GI H A
Sbjct: 131 H--CAM-----LRYAAYAGERHPVTGKYRW---------HRLDRAAAALGIPRPT-HRAL 173
Query: 179 ADV 181
D
Sbjct: 174 GDA 176
>gi|149924278|ref|ZP_01912650.1| oligoribonuclease [Plesiocystis pacifica SIR-1]
gi|149814858|gb|EDM74424.1| oligoribonuclease [Plesiocystis pacifica SIR-1]
Length = 179
Score = 38.6 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
H + D E G D + + A + + + E I
Sbjct: 6 PHLIWLDMEMTGLDPEREVILEVATLVTNAELEIIAE 42
>gi|282854757|ref|ZP_06264092.1| exonuclease [Propionibacterium acnes J139]
gi|282582339|gb|EFB87721.1| exonuclease [Propionibacterium acnes J139]
Length = 205
Score = 38.6 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 19/54 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
M + V D E G D+A D + A + D Q KP +L
Sbjct: 1 MKDMLVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPESQWLDH 54
>gi|145297909|ref|YP_001140750.1| oligoribonuclease [Aeromonas salmonicida subsp. salmonicida A449]
gi|166215749|sp|A4SJD0|ORN_AERS4 RecName: Full=Oligoribonuclease
gi|142850681|gb|ABO89002.1| oligoribonuclease [Aeromonas salmonicida subsp. salmonicida A449]
Length = 181
Score = 38.6 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D + + A + D+ +
Sbjct: 5 AQNLVWIDMEMTGLDPEENVVLEIATIVTDKDLNVLAE 42
>gi|88802793|ref|ZP_01118320.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
gi|88781651|gb|EAR12829.1| DNA polymerase III subunit [Polaribacter irgensii 23-P]
Length = 361
Score = 38.6 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 30/164 (18%)
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
V +TGI K LR E ++RI + C + +N FD YR
Sbjct: 51 VRLTGIN-NKMLRSAPKFYEIAKRIIEITKD---CTLVAHNTTFD--------YRILSTE 98
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
+ +D S I S+ L L A GI + H A
Sbjct: 99 FDRLG------YDFNRNTLCTVELSKQLIL------DQPSYSLGKLTKALGIPMTDRHRA 146
Query: 178 KADVYATLALVWLI--REKKPKLFEYLYDYRN----KNQLRKLI 215
D AT+ L L+ ++ + + + + K +L+KLI
Sbjct: 147 SGDALATVQLFKLLLEKDSTKTIIQNFVKHHDQRFEKERLQKLI 190
>gi|86131767|ref|ZP_01050364.1| exonuclease family protein [Dokdonia donghaensis MED134]
gi|85817589|gb|EAQ38763.1| exonuclease family protein [Dokdonia donghaensis MED134]
Length = 400
Score = 38.6 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 154 GATSFKLQDLALANGIEHVNAHDAKADVYATLALVWLIREKKPK--LFEYLYDYRNKN-- 209
G S+ L L A GI N H A D AT+ L L+ K P+ +F+ K
Sbjct: 64 GHDSYSLGKLTKALGISMSNRHRADGDAIATVKLFELLLSKDPEQIVFKKATRSFPKKHM 123
Query: 210 --QLRKLID 216
+L++LI
Sbjct: 124 DTKLKELIK 132
>gi|290961466|ref|YP_003492648.1| exonuclease [Streptomyces scabiei 87.22]
gi|260650992|emb|CBG74110.1| putative exonuclease [Streptomyces scabiei 87.22]
Length = 331
Score = 38.6 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 55/177 (31%), Gaps = 35/177 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T
Sbjct: 26 DVETTGL-ARDDRIISAAVYRLDAR-GEVEDHWYTLVNPERD----PGPVWIHGLTSDVL 79
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS---RNIFYRNFYDSYRWSWDNG 125
+G R I Q FS R D +F + +
Sbjct: 80 --EGAP---LFRDIAQEFSA-----------RLADRVLVAHNAVFDWSM---IAREYARA 120
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + + I G+ P+ KL+ LA G+ AH A D
Sbjct: 121 ETEAPVRQRLCTIALSKELGLPLPNH-------KLESLAAHFGVVQQRAHHALDDAR 170
>gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
Length = 244
Score = 38.6 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 53/178 (29%), Gaps = 27/178 (15%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I D ET G + DR + V + + F+ P D DP A+ + G+T
Sbjct: 4 LILDTETTGLNARTGDRIIEVGCVEL-VNRRLTGNNLHFYINPERD--SDPGALAVHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ AE + F II +N FD + F
Sbjct: 61 TEFLSDKPKF-AEIADEFRD-FIQGADLII--HNAPFDIGFLDAEFALLGLPPVSTH--- 113
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
+++D + P S L L GI H H A D
Sbjct: 114 ---CGEIIDTLARAKQMFPG---------KRNS--LDALCDRFGISNAHRTLHGALLD 157
>gi|320526754|ref|ZP_08027944.1| peptidase M16C associated [Solobacterium moorei F0204]
gi|320132722|gb|EFW25262.1| peptidase M16C associated [Solobacterium moorei F0204]
Length = 965
Score = 38.6 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 89/251 (35%), Gaps = 48/251 (19%)
Query: 244 AWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEV----HLNK 299
+HP ++ + + + D+ + + F ++ + + +P++++ H N+
Sbjct: 219 FYHPS--NARVWLDGNLDIDEVLRF----IHEEYFVNYQKEEMDFAIPMQKILPAVH-NR 271
Query: 300 CPILMPIDYCKKEH----FERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSS-- 353
+ + + F + + ++N+ + L A P +
Sbjct: 272 ISYEVNENEPTENRSHISFAKIISTYDSYVQNIAW----SALSSTLVANNESPLKKAILD 327
Query: 354 ----QDVDSQLYDGFF----------ADVDR-QIMDRILRTAPEQLSTLNLPFSDRR--L 396
+DVD LYDG D D+ + +ILR+ +L L + + +
Sbjct: 328 NNLGEDVDLDLYDGIQQPWLVLTIRNTDADKYDAIRKILRSTTSKLVKDGLDHEELQATI 387
Query: 397 PELFFRYRARNFPHTLSEKE--KQDWLEHR--KKMLTRSRIEEYKNK------LQSLSGE 446
++ FRYR + P L + WL + L+ ++ + + + L
Sbjct: 388 NQMEFRYRESHEPAGLMYGQRAMDSWLYGGDPAEPLSNGKLFDILREKIEQGYFEELLSS 447
Query: 447 YKGDEGKEGLI 457
+ DE +
Sbjct: 448 FLLDEEHLNSL 458
>gi|191637943|ref|YP_001987109.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
casei BL23]
gi|190712245|emb|CAQ66251.1| DNA-directed DNA polymerase III, epsilon subunit [Lactobacillus
casei BL23]
gi|327382013|gb|AEA53489.1| hypothetical protein LC2W_1155 [Lactobacillus casei LC2W]
gi|327385171|gb|AEA56645.1| hypothetical protein LCBD_1147 [Lactobacillus casei BD-II]
Length = 180
Score = 38.6 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 29/134 (21%)
Query: 60 ITGITPQKALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I GITP+ F R Q F P I+ +N FD R R +
Sbjct: 52 IHGITPEMVQDQ----PTFDRVWPHIQMFYTPGR-IVTAHNAPFDVSVMRLTLDRYGIAA 106
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
R+ ++D ++ F P + +L ++ A I + H+A
Sbjct: 107 ---------PRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNA 147
Query: 178 KADVYATLALVWLI 191
AD YA ++
Sbjct: 148 LADSYA---CARIL 158
>gi|313836680|gb|EFS74394.1| exonuclease [Propionibacterium acnes HL037PA2]
gi|314929914|gb|EFS93745.1| exonuclease [Propionibacterium acnes HL044PA1]
gi|314972342|gb|EFT16439.1| exonuclease [Propionibacterium acnes HL037PA3]
Length = 202
Score = 38.6 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
V D E G D+A D + A + D Q KP +L
Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLEH 51
>gi|213401823|ref|XP_002171684.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275]
gi|211999731|gb|EEB05391.1| oligoribonuclease [Schizosaccharomyces japonicus yFS275]
Length = 187
Score = 38.6 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G +V D + A + D IE
Sbjct: 9 LVWVDCEMTGLEVGKDVLMEVAAIITDGDLNPIEE 43
>gi|107022156|ref|YP_620483.1| oligoribonuclease [Burkholderia cenocepacia AU 1054]
gi|116689101|ref|YP_834724.1| oligoribonuclease [Burkholderia cenocepacia HI2424]
gi|170732389|ref|YP_001764336.1| oligoribonuclease [Burkholderia cenocepacia MC0-3]
gi|254245960|ref|ZP_04939281.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
cenocepacia PC184]
gi|123371764|sp|Q1BXZ5|ORN_BURCA RecName: Full=Oligoribonuclease
gi|166215751|sp|A0K5Q4|ORN_BURCH RecName: Full=Oligoribonuclease
gi|105892345|gb|ABF75510.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
cenocepacia AU 1054]
gi|116647190|gb|ABK07831.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
cenocepacia HI2424]
gi|124870736|gb|EAY62452.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia
cenocepacia PC184]
gi|169815631|gb|ACA90214.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
cenocepacia MC0-3]
Length = 206
Score = 38.6 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51
>gi|114332140|ref|YP_748362.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
Length = 234
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 5 FVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+V D ET G D AL R + A V V + D A+ + G+
Sbjct: 3 YVFLDTETTGLDPALGHRIVEIAAVEV-CNRRSTGRHFHRY--LNPGRESDEGALRVHGL 59
Query: 64 TPQKALRD 71
+ +
Sbjct: 60 SREFLQDK 67
>gi|325524019|gb|EGD02205.1| oligoribonuclease [Burkholderia sp. TJI49]
Length = 208
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51
>gi|317126517|ref|YP_004100629.1| exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
DSM 43043]
gi|315590605|gb|ADU49902.1| Exonuclease RNase T and DNA polymerase III [Intrasporangium calvum
DSM 43043]
Length = 228
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D V VD + C+ D ++ + GIT A
Sbjct: 48 DLETTGLDPRTDHILTVGFVPVDGLVIDLSGATQLLCRAEGDV---GQSAVVHGIT-DDA 103
Query: 69 LRDGVVEAEFSRRIHQFF 86
L G+ A+ R+
Sbjct: 104 LAGGLPLADVVDRVAAAL 121
>gi|206561254|ref|YP_002232019.1| oligoribonuclease [Burkholderia cenocepacia J2315]
gi|198037296|emb|CAR53218.1| oligoribonuclease [Burkholderia cenocepacia J2315]
Length = 206
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51
>gi|167755995|ref|ZP_02428122.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
gi|167703987|gb|EDS18566.1| hypothetical protein CLORAM_01515 [Clostridium ramosum DSM 1402]
Length = 443
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 50/232 (21%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA--- 57
M D ET + + + + VD + +L DPEA
Sbjct: 1 MEQSITFVDVET--PNYQNNSISSIGVINVDGD----GVVTTKY------FLVDPEAHFD 48
Query: 58 ---VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNF 114
+ +TGITP+ E I +F+ N+ ++ +N + FD R
Sbjct: 49 RFNIELTGITPEMVADQP-NFKEVWSEIEPYFT--NSLVVAHNAV-FDLSVISACLQRYD 104
Query: 115 YDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNA 174
+ + ++ PS S+KL DL+ + N
Sbjct: 105 LP--------------IFPIFYTCTYRISRALKIPSN-----SYKLNDLSSYYHVTLDNH 145
Query: 175 HDAKADVYATLAL-VWLIREKKPKLFEYLYDYR--------NKNQLRKLIDI 217
H+A AD A + + +L++E + + NK L LI +
Sbjct: 146 HNALADSKACMEIFYYLLKEPNLETLDQYVKCFEPTKGNKDNKKYLEVLIGL 197
>gi|326331153|ref|ZP_08197449.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
gi|325951048|gb|EGD43092.1| oligoribonuclease [Nocardioidaceae bacterium Broad-1]
Length = 222
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 25/128 (19%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-------DDYLP 53
+ V D E G + D + A + D + KP DD++
Sbjct: 8 LNERLVWIDCEMTGLSLENDALIEVAALVTDFDLNVLGDGVDIIIKPPAEALEQMDDFVR 67
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFF-------SVPNTCIIGYNNIRFDDYYS 106
D T L +GV E ++ + S P +G N + D
Sbjct: 68 D----MHTKSGLLVELENGVTMREAEEQVLAYVWEHCGKDSRPP---LGGNTVATD---- 116
Query: 107 RNIFYRNF 114
RN R+
Sbjct: 117 RNFLARDM 124
>gi|90421821|ref|YP_530191.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
BisB18]
gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
BisB18]
Length = 231
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 38/198 (19%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWE--KIESTEVFFCKPADDYLPDPEAVFITGITP 65
D ET G D DR + V + T + P D +P EA + G++
Sbjct: 7 DTETTGLDPLRGDRLVEIGCV---EIFNRMPTGQTFHRYINPERD-MPQ-EAFAVHGLSA 61
Query: 66 QKALRDGVVEAEFSRRIHQ--FFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
+ + F+ + + F +I +N FD + +
Sbjct: 62 EFLSTKPL----FAEVVDEFLEFIAEAPLVI--HNASFDIGFINAELGKIARPPIPRDR- 114
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL--ANGIEHVNAHDAKADV 181
L+D + P S +L DL A H A D
Sbjct: 115 -------LVDTLLLARRKHP-----------GVSNRLDDLCSRYAIDNSRRTKHGALLDA 156
Query: 182 YATLAL-VWLIREKKPKL 198
+ + LI ++ +L
Sbjct: 157 ELLAEVYIDLIGARQSQL 174
>gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
Length = 236
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 27/177 (15%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D A R + V + + + + P + + EA+ + GIT +
Sbjct: 7 DTETTGIDPAEGHRIIEIGCVEL-MERQITGRHYHVYINPEREV--EAEAITVHGITNEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+F+ +FF + +N FD + + F R R + ++
Sbjct: 64 LADK----PKFAAIADEFFEFIKGAELVIHNAAFDIGFMDSEFAR--LKPVRRTTEH-CG 116
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN--AHDAKADVY 182
D L + R + P + + L L GI++ N H A D
Sbjct: 117 VVDSLAIARKKH---------PGQKNN-----LDALCKRYGIDNSNRELHGALLDAE 159
>gi|225571547|ref|ZP_03780543.1| hypothetical protein CLOHYLEM_07645 [Clostridium hylemonae DSM
15053]
gi|225159624|gb|EEG72243.1| hypothetical protein CLOHYLEM_07645 [Clostridium hylemonae DSM
15053]
Length = 383
Score = 38.6 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 404 RARNF---PHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460
RA NF P L + R+ +L +++Y + Q+L+G L+
Sbjct: 92 RAFNFSLEPENLYYDAQYRLHVLRRDILEDGAVKDYFKEFQALAG---------ALLQKK 142
Query: 461 YEYLQWV 467
Y Y ++
Sbjct: 143 YNYSDYL 149
>gi|325001618|ref|ZP_08122730.1| hypothetical protein PseP1_22781 [Pseudonocardia sp. P1]
Length = 403
Score = 38.6 bits (89), Expect = 2.5, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 54/195 (27%), Gaps = 33/195 (16%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAVFI 60
F + D ET G D + V V E I + D +
Sbjct: 24 TFCVVDLETTGGSHRADAITEVGAVSVRGG-ESIGELSTLVDPGTRVPADV------TRL 76
Query: 61 TGITPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
TGIT G + + ++ +N FD + R R+
Sbjct: 77 TGITNGMLA--GAPPLGAVLPPVLDLLR--GSVLVAHNA-PFDTGFLRAACERHERP--- 128
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKA 179
W V+ P + S +L LA G H A
Sbjct: 129 ---------WPSPPVLCTARLAR---AVLPRSE--CPSVRLGALAAHFGCRTTPDHRALT 174
Query: 180 DVYATLALVWLIREK 194
D AT+ ++ + E+
Sbjct: 175 DARATVEVLHHLLER 189
>gi|255021102|ref|ZP_05293155.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
gi|254969516|gb|EET27025.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
Length = 475
Score = 38.6 bits (89), Expect = 2.5, Method: Composition-based stats.
Identities = 37/223 (16%), Positives = 64/223 (28%), Gaps = 33/223 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
+ D E G + DR + + V EV+ + P +
Sbjct: 5 LDTTLAFIDLENTGGHLERDRIIEVGIILVAPA----GEPEVWSTLINPEIRLSPAISTL 60
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
TGI P + A ++ + +I ++ R D + R
Sbjct: 61 TGIDPAD-----LAHAPTFAQVAEPLREKLAGRLLIAHDA-RTDLAFLRQ---------- 104
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
W D+L +R + PD + G L + + H A
Sbjct: 105 EWRRLGQVFTADVLCTLRLSRSLFPD-----EKRHG-----LDAIIERLQLHSAGRHRAL 154
Query: 179 ADVYAT-LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNM 220
D + L L E+ +L E + L +D Q +
Sbjct: 155 TDARTVAIFLARLYSEQPARLLEACRQQWQRPALPGSLDAQTL 197
>gi|229187939|ref|ZP_04315044.1| exonuclease [Bacillus cereus BGSC 6E1]
gi|228595536|gb|EEK53251.1| exonuclease [Bacillus cereus BGSC 6E1]
Length = 181
Score = 38.6 bits (89), Expect = 2.5, Method: Composition-based stats.
Identities = 41/203 (20%), Positives = 66/203 (32%), Gaps = 56/203 (27%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ FVI D ET G D+ + + D + + KP + +P EA I G
Sbjct: 23 DQFVILDTETTGL-TLRDQIIEICVI--DLTGKIL---LNSLVKPTIN-IPA-EAASIHG 74
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSV----PNTCIIGYN------NIRFDDYYSRNIFYR 112
IT + ++H S C + N FD + +
Sbjct: 75 IT--------------NEKVHDAPSWIEIYKELCEVTAGKTLLIYNAEFDLGMIESTCFA 120
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
N + N S + + +YA D +W S L D E
Sbjct: 121 NNV-----EFKNFKSTF-----IMKMYADYVDSKRW-------IS--LSDAT-----ELT 156
Query: 173 NAHDAKADVYATLALVWLIREKK 195
H A +D +A L L+ ++ +
Sbjct: 157 IKHRAASDCFAVLELLQQLKNSQ 179
>gi|327329611|gb|EGE71367.1| oligoribonuclease [Propionibacterium acnes HL096PA3]
Length = 202
Score = 38.2 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
V D E G D+A D + A + D Q KP +L
Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDH 51
>gi|320163436|gb|EFW40335.1| REXO2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 180
Score = 38.2 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 17/121 (14%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKP-------ADDYL 52
++ + D E G DV+ + + A + D + + ++ +P D
Sbjct: 4 LSTRMIWVDLEMTGLDVSTETIIEMACIVTDSRGNILAEGPDIIIHQPDEVLDRMNDWCK 63
Query: 53 PDPEAVFITGITPQ-KALRDGVVEAE--FSRRIHQFFSVPNTCIIGYNNIRFDDYYS-RN 108
A +G+T +A + EAE + + S + G N I D + R
Sbjct: 64 EHHGA---SGLTAAVRASTTSLAEAEEVMLAFVREHTSK-GCVLAG-NTIHMDKRFLDRY 118
Query: 109 I 109
+
Sbjct: 119 M 119
>gi|313773620|gb|EFS39586.1| exonuclease [Propionibacterium acnes HL074PA1]
gi|313793857|gb|EFS41881.1| exonuclease [Propionibacterium acnes HL110PA1]
gi|313801249|gb|EFS42500.1| exonuclease [Propionibacterium acnes HL110PA2]
gi|313811456|gb|EFS49170.1| exonuclease [Propionibacterium acnes HL083PA1]
gi|313831196|gb|EFS68910.1| exonuclease [Propionibacterium acnes HL007PA1]
gi|313834219|gb|EFS71933.1| exonuclease [Propionibacterium acnes HL056PA1]
gi|313840029|gb|EFS77743.1| exonuclease [Propionibacterium acnes HL086PA1]
gi|314963788|gb|EFT07888.1| exonuclease [Propionibacterium acnes HL082PA1]
gi|314974073|gb|EFT18169.1| exonuclease [Propionibacterium acnes HL053PA1]
gi|314976638|gb|EFT20733.1| exonuclease [Propionibacterium acnes HL045PA1]
gi|314984301|gb|EFT28393.1| exonuclease [Propionibacterium acnes HL005PA1]
gi|315079637|gb|EFT51630.1| exonuclease [Propionibacterium acnes HL053PA2]
gi|315081132|gb|EFT53108.1| exonuclease [Propionibacterium acnes HL078PA1]
gi|315095417|gb|EFT67393.1| exonuclease [Propionibacterium acnes HL038PA1]
gi|327328524|gb|EGE70286.1| oligoribonuclease [Propionibacterium acnes HL096PA2]
gi|327444311|gb|EGE90965.1| exonuclease [Propionibacterium acnes HL043PA2]
gi|327444807|gb|EGE91461.1| exonuclease [Propionibacterium acnes HL043PA1]
gi|327452117|gb|EGE98771.1| exonuclease [Propionibacterium acnes HL092PA1]
gi|328759959|gb|EGF73543.1| oligoribonuclease [Propionibacterium acnes HL099PA1]
Length = 202
Score = 38.2 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
V D E G D+A D + A + D Q KP +L
Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDH 51
>gi|50843110|ref|YP_056337.1| oligoribonuclease [Propionibacterium acnes KPA171202]
gi|81826407|sp|Q6A786|ORN_PROAC RecName: Full=Oligoribonuclease
gi|50840712|gb|AAT83379.1| oligoribonuclease [Propionibacterium acnes KPA171202]
gi|313763467|gb|EFS34831.1| exonuclease [Propionibacterium acnes HL013PA1]
gi|313808072|gb|EFS46553.1| exonuclease [Propionibacterium acnes HL087PA2]
gi|313813519|gb|EFS51233.1| exonuclease [Propionibacterium acnes HL025PA1]
gi|313816648|gb|EFS54362.1| exonuclease [Propionibacterium acnes HL059PA1]
gi|313819642|gb|EFS57356.1| exonuclease [Propionibacterium acnes HL046PA2]
gi|313822034|gb|EFS59748.1| exonuclease [Propionibacterium acnes HL036PA1]
gi|313823730|gb|EFS61444.1| exonuclease [Propionibacterium acnes HL036PA2]
gi|313826052|gb|EFS63766.1| exonuclease [Propionibacterium acnes HL063PA1]
gi|313829524|gb|EFS67238.1| exonuclease [Propionibacterium acnes HL063PA2]
gi|314914829|gb|EFS78660.1| exonuclease [Propionibacterium acnes HL005PA4]
gi|314919419|gb|EFS83250.1| exonuclease [Propionibacterium acnes HL050PA1]
gi|314920674|gb|EFS84505.1| exonuclease [Propionibacterium acnes HL050PA3]
gi|314924777|gb|EFS88608.1| exonuclease [Propionibacterium acnes HL036PA3]
gi|314930554|gb|EFS94385.1| exonuclease [Propionibacterium acnes HL067PA1]
gi|314954492|gb|EFS98898.1| exonuclease [Propionibacterium acnes HL027PA1]
gi|314957575|gb|EFT01678.1| exonuclease [Propionibacterium acnes HL002PA1]
gi|314961982|gb|EFT06083.1| exonuclease [Propionibacterium acnes HL002PA2]
gi|314968385|gb|EFT12483.1| exonuclease [Propionibacterium acnes HL037PA1]
gi|314978912|gb|EFT23006.1| exonuclease [Propionibacterium acnes HL072PA2]
gi|314986647|gb|EFT30739.1| exonuclease [Propionibacterium acnes HL005PA2]
gi|314991003|gb|EFT35094.1| exonuclease [Propionibacterium acnes HL005PA3]
gi|315083650|gb|EFT55626.1| exonuclease [Propionibacterium acnes HL027PA2]
gi|315087019|gb|EFT58995.1| exonuclease [Propionibacterium acnes HL002PA3]
gi|315089194|gb|EFT61170.1| exonuclease [Propionibacterium acnes HL072PA1]
gi|315099093|gb|EFT71069.1| exonuclease [Propionibacterium acnes HL059PA2]
gi|315100423|gb|EFT72399.1| exonuclease [Propionibacterium acnes HL046PA1]
gi|315106884|gb|EFT78860.1| exonuclease [Propionibacterium acnes HL030PA1]
gi|315109117|gb|EFT81093.1| exonuclease [Propionibacterium acnes HL030PA2]
gi|327334124|gb|EGE75838.1| oligoribonuclease [Propionibacterium acnes HL097PA1]
gi|327446295|gb|EGE92949.1| exonuclease [Propionibacterium acnes HL013PA2]
gi|327454846|gb|EGF01501.1| exonuclease [Propionibacterium acnes HL087PA3]
gi|327457869|gb|EGF04524.1| exonuclease [Propionibacterium acnes HL083PA2]
gi|328752440|gb|EGF66056.1| exonuclease [Propionibacterium acnes HL020PA1]
gi|328755323|gb|EGF68939.1| exonuclease [Propionibacterium acnes HL087PA1]
gi|328758196|gb|EGF71812.1| exonuclease [Propionibacterium acnes HL025PA2]
gi|332676038|gb|AEE72854.1| oligoribonuclease [Propionibacterium acnes 266]
Length = 202
Score = 38.2 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
V D E G D+A D + A + D Q KP +L
Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDH 51
>gi|209522085|ref|ZP_03270737.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160]
gi|209497475|gb|EDZ97678.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. H160]
Length = 251
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + +++ V +D+ L A
Sbjct: 67 NLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL----AKMDEWN 122
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV 88
G + + V EA+ + +I +F
Sbjct: 123 QNTHGRSGLIDRVKASTVSEADATAQIREFLGQ 155
>gi|38234384|ref|NP_940151.1| oligoribonuclease [Corynebacterium diphtheriae NCTC 13129]
gi|48428192|sp|P61650|ORN_CORDI RecName: Full=Oligoribonuclease
gi|38200647|emb|CAE50343.1| oligoribonuclease [Corynebacterium diphtheriae]
Length = 210
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G ++ + A + D I
Sbjct: 9 NDRLVWIDLEMTGLELDRHVIVEVAALITDADLNIIGE 46
>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
Length = 1428
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 27/144 (18%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
FV++D ET G + + A V+V + D +P P+ +TGI
Sbjct: 416 FVVFDTETTGLNAREHTLIEIAAVKVRG-----GELVDHYTSLIDPGVPISPKIQELTGI 470
Query: 64 TPQKAL-RDGVVEA-EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + G+ E E R+ ++ +N FD + ++ +
Sbjct: 471 TSDMVKGQPGLSEVLEAFRKFAA-----GAVLVAHNA-EFDMGFLQSAARKLGQPP---- 520
Query: 122 WDNGNSRWD--LLDVMRAIYAFSP 143
WD +LD + P
Sbjct: 521 -------WDHPVLDTLALARVLYP 537
>gi|78777984|ref|YP_394299.1| exonuclease [Sulfurimonas denitrificans DSM 1251]
gi|78498524|gb|ABB45064.1| Exonuclease [Sulfurimonas denitrificans DSM 1251]
Length = 247
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 35/188 (18%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60
M ++I D ET G DR Q + + +IE FF A+
Sbjct: 1 MAKRYIILDTETTGIG-EEDRVIQLGFIVLGE--REIEVQNEFFSTSVP---ISFGAMET 54
Query: 61 TGITPQKALRDGVVEAEFS-RRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
GITP+ + + S RR+++ S N II +N +FD + ++
Sbjct: 55 HGITPEMLDGKPLCKDSTSYRRLNELNSDENYLII--HNAKFDIDMLQKEGFK------- 105
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKL------QDLALANGIEHV- 172
++ ++D +R PD F+ ++ A+ + V
Sbjct: 106 -------TQMRVIDTLRVAKHLLPD-----EEAHRLQYFRYKMELYKEEQKEADELNIVI 153
Query: 173 NAHDAKAD 180
AHDA D
Sbjct: 154 KAHDAIGD 161
>gi|15902755|ref|NP_358305.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae R6]
gi|116516668|ref|YP_816199.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae D39]
gi|15458302|gb|AAK99515.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
gi|116077244|gb|ABJ54964.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae D39]
Length = 816
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMAQL 172
>gi|254252896|ref|ZP_04946214.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
AUO158]
gi|124895505|gb|EAY69385.1| Oligoribonuclease (3'->5' exoribonuclease) [Burkholderia dolosa
AUO158]
Length = 207
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51
>gi|257069110|ref|YP_003155365.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM
4810]
gi|256559928|gb|ACU85775.1| N-acyl-D-glucosamine 2-epimerase [Brachybacterium faecium DSM
4810]
Length = 634
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + + D E G D D + A + D + KP + L
Sbjct: 9 INDRIIWVDCEMTGLDKQRDALVEIAVLVTDADLNILGDGVDVVIKPPAEAL 60
>gi|83594940|ref|YP_428692.1| DNA polymerase III, subunit epsilon [Rhodospirillum rubrum ATCC
11170]
gi|83577854|gb|ABC24405.1| DNA polymerase III, epsilon subunit [Rhodospirillum rubrum ATCC
11170]
Length = 230
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 26/141 (18%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D A DR + + + + + P D +P PEA + G++
Sbjct: 7 DTETTGLDPATGDRLVEIGCIEL-INHMPSGNDLHLYVNPERD-MP-PEAFRVHGLSEAF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIG-----YNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ F+ + +F + IG +N FD + R S
Sbjct: 64 LADKPL----FAEVVDEFLA-----FIGEDRLIIHNAAFDMKFLNAELARLKRPPLPMSR 114
Query: 123 DNGNSRWDLLDVMRAIYAFSP 143
LD +R A P
Sbjct: 115 A--------LDTLRMAQARFP 127
>gi|318057718|ref|ZP_07976441.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actG]
gi|318079748|ref|ZP_07987080.1| DNA polymerase III subunit epsilon [Streptomyces sp. SA3_actF]
gi|333028027|ref|ZP_08456091.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
gi|332747879|gb|EGJ78320.1| putative DNA polymerase III subunit epsilon [Streptomyces sp.
Tu6071]
Length = 331
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 33/176 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A RVD + ++E P D P V+I G+T +
Sbjct: 23 DVETTGL-ARDDRIVSAAVYRVDAR-GEVEDHWYTLVNPERD----PGPVWIHGLTSEVL 76
Query: 69 LRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ I + S ++ +N + F + +
Sbjct: 77 EGAPLFP-----EIAEELSRRLDGRVLVAHNAV----------FDWSM---LAREYARAG 118
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + I + P+ KL+ LA G+E AH A D
Sbjct: 119 ITAPVRRRLCTIALAKELALPLPNH-------KLETLAAHFGVEQRRAHHALDDAR 167
>gi|311086851|gb|ADP66932.1| hypothetical protein CWQ_02950 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 52
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+L +EYKN +Q L +Y + K L+ L ++
Sbjct: 2 NVLNPVSFQEYKNNIQFLLKKYSNNTEKVVLLKQLLDF 39
>gi|261210416|ref|ZP_05924710.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
gi|260840474|gb|EEX67040.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
Length = 209
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 60/183 (32%), Gaps = 36/183 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIE-------STEVFFCKPADDYLPDPEAVFIT 61
D ET D A + + I+ EV C P D +V I
Sbjct: 34 DCETTSLDPKR------AELVTIAATKIIDNRILTSQPFEVRLCAPQS---LDSGSVRIH 84
Query: 62 GITPQKALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
I Q L+DG+ E E + I + P ++GY+ IR+D ++
Sbjct: 85 KIRHQD-LQDGLSEKEALIQLIDFIGNRP---LVGYH-IRYDKTILDIACRKHLGFPLP- 138
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
N L++V + + + D L+ + + + HDA D
Sbjct: 139 -----NR---LIEVSQIYHDKLEKHLPNAYFD-----LSLEAICRHLDLPLQDKHDALQD 185
Query: 181 VYA 183
A
Sbjct: 186 AIA 188
>gi|115351008|ref|YP_772847.1| oligoribonuclease [Burkholderia ambifaria AMMD]
gi|172060013|ref|YP_001807665.1| oligoribonuclease [Burkholderia ambifaria MC40-6]
gi|122323700|sp|Q0BH60|ORN_BURCM RecName: Full=Oligoribonuclease
gi|115280996|gb|ABI86513.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
ambifaria AMMD]
gi|171992530|gb|ACB63449.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
ambifaria MC40-6]
Length = 206
Score = 38.2 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51
>gi|298253384|ref|ZP_06977176.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
gi|297532779|gb|EFH71665.1| DNA polymerase III, epsilon subunit [Gardnerella vaginalis 5-1]
Length = 261
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 62/195 (31%), Gaps = 33/195 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G ++ D V + + + +P+A + G T +
Sbjct: 34 FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTW-LINPHQPMNPKASEVNGFTDEY 92
Query: 68 ALRDG---VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
G E EF R N ++ YN FD R+
Sbjct: 93 LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNA-PFDIAMLRHDL-------------- 137
Query: 125 GNSRWDL----LDVMRAIYAFSPDGIQW--PSRDDGATSFK-----LQDLALANGIE-HV 172
W L +I+A + + I P D A S + L + G+E
Sbjct: 138 --KHWHLTALEERATCSIHALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVEPIG 195
Query: 173 NAHDAKADVYATLAL 187
+ HDA AD A L L
Sbjct: 196 DFHDATADTVAALDL 210
>gi|254472171|ref|ZP_05085571.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
gi|211958454|gb|EEA93654.1| DNA polymerase III, epsilon subunit [Pseudovibrio sp. JE062]
Length = 236
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 8 YDYETFGRDV-ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQ 66
+D ET G + DR + GV + + T + P D +P+ EA I G++ +
Sbjct: 6 FDTETTGLNPLDGDRLVEIGGVEL-INFIPTGRTCHLYVNPQRD-MPE-EAFRIHGLSAE 62
Query: 67 KALRDGV 73
V
Sbjct: 63 FLSDKPV 69
>gi|254191977|ref|ZP_04898477.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
gi|254203892|ref|ZP_04910252.1| oligoribonuclease [Burkholderia mallei FMH]
gi|254360071|ref|ZP_04976341.1| oligoribonuclease [Burkholderia mallei 2002721280]
gi|147745404|gb|EDK52484.1| oligoribonuclease [Burkholderia mallei FMH]
gi|148029311|gb|EDK87216.1| oligoribonuclease [Burkholderia mallei 2002721280]
gi|157987799|gb|EDO95564.1| oligoribonuclease [Burkholderia pseudomallei Pasteur 52237]
Length = 203
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 21 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 53
>gi|118594944|ref|ZP_01552291.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
gi|118440722|gb|EAV47349.1| oligoribonuclease [Methylophilales bacterium HTCC2181]
Length = 182
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
N+ + D E G D D+ + A V D I + VF
Sbjct: 6 NNNLIWLDMEMSGLDPENDKVLEIAVVITDPFLTIIAESPVF 47
>gi|167720628|ref|ZP_02403864.1| oligoribonuclease [Burkholderia pseudomallei DM98]
gi|167903697|ref|ZP_02490902.1| oligoribonuclease [Burkholderia pseudomallei NCTC 13177]
gi|254181122|ref|ZP_04887720.1| oligoribonuclease [Burkholderia pseudomallei 1655]
gi|184211661|gb|EDU08704.1| oligoribonuclease [Burkholderia pseudomallei 1655]
Length = 201
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51
>gi|301066020|ref|YP_003788043.1| DNA polymerase III subunit epsilon [Lactobacillus casei str. Zhang]
gi|300438427|gb|ADK18193.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus casei str. Zhang]
Length = 180
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 29/134 (21%)
Query: 60 ITGITPQKALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I GITP+ F + Q F P I+ +N FD R R +
Sbjct: 52 IHGITPEMVQDQ----PTFDQVWPHIQMFYTPGR-IVTAHNAPFDVSVMRLTLDRYGIAA 106
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
R+ ++D ++ F P + +L ++ A I + H+A
Sbjct: 107 ---------PRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNA 147
Query: 178 KADVYATLALVWLI 191
AD YA ++
Sbjct: 148 LADSYA---CARIL 158
>gi|53724753|ref|YP_102207.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
gi|67642879|ref|ZP_00441630.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
gi|121598453|ref|YP_993837.1| oligoribonuclease [Burkholderia mallei SAVP1]
gi|124385187|ref|YP_001026898.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
gi|126441737|ref|YP_001059867.1| oligoribonuclease [Burkholderia pseudomallei 668]
gi|126450125|ref|YP_001079814.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
gi|166999773|ref|ZP_02265607.1| oligoribonuclease [Burkholderia mallei PRL-20]
gi|167739617|ref|ZP_02412391.1| oligoribonuclease [Burkholderia pseudomallei 14]
gi|167825224|ref|ZP_02456695.1| oligoribonuclease [Burkholderia pseudomallei 9]
gi|167895311|ref|ZP_02482713.1| oligoribonuclease [Burkholderia pseudomallei 7894]
gi|167911947|ref|ZP_02499038.1| oligoribonuclease [Burkholderia pseudomallei 112]
gi|167919939|ref|ZP_02507030.1| oligoribonuclease [Burkholderia pseudomallei BCC215]
gi|226197920|ref|ZP_03793494.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
gi|254176983|ref|ZP_04883640.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
gi|254208872|ref|ZP_04915220.1| oligoribonuclease [Burkholderia mallei JHU]
gi|254259729|ref|ZP_04950783.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
gi|254295656|ref|ZP_04963114.1| oligoribonuclease [Burkholderia pseudomallei 406e]
gi|59798006|sp|Q62M61|ORN_BURMA RecName: Full=Oligoribonuclease
gi|166215752|sp|A3MHS8|ORN_BURM7 RecName: Full=Oligoribonuclease
gi|166215753|sp|A2S4M9|ORN_BURM9 RecName: Full=Oligoribonuclease
gi|166215754|sp|A1V6I4|ORN_BURMS RecName: Full=Oligoribonuclease
gi|166215756|sp|A3NBZ6|ORN_BURP6 RecName: Full=Oligoribonuclease
gi|52428176|gb|AAU48769.1| oligoribonuclease [Burkholderia mallei ATCC 23344]
gi|121227263|gb|ABM49781.1| oligoribonuclease [Burkholderia mallei SAVP1]
gi|124293207|gb|ABN02476.1| oligoribonuclease [Burkholderia mallei NCTC 10229]
gi|126221230|gb|ABN84736.1| oligoribonuclease [Burkholderia pseudomallei 668]
gi|126242995|gb|ABO06088.1| oligoribonuclease [Burkholderia mallei NCTC 10247]
gi|147750748|gb|EDK57817.1| oligoribonuclease [Burkholderia mallei JHU]
gi|157805488|gb|EDO82658.1| oligoribonuclease [Burkholderia pseudomallei 406e]
gi|160698024|gb|EDP87994.1| oligoribonuclease [Burkholderia mallei ATCC 10399]
gi|225930108|gb|EEH26121.1| oligoribonuclease [Burkholderia pseudomallei Pakistan 9]
gi|238524093|gb|EEP87528.1| oligoribonuclease [Burkholderia mallei GB8 horse 4]
gi|243064261|gb|EES46447.1| oligoribonuclease [Burkholderia mallei PRL-20]
gi|254218418|gb|EET07802.1| oligoribonuclease [Burkholderia pseudomallei 1710a]
Length = 201
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51
>gi|226307350|ref|YP_002767310.1| oligoribonuclease [Rhodococcus erythropolis PR4]
gi|229494052|ref|ZP_04387821.1| oligoribonuclease [Rhodococcus erythropolis SK121]
gi|226186467|dbj|BAH34571.1| oligoribonuclease [Rhodococcus erythropolis PR4]
gi|229319121|gb|EEN84973.1| oligoribonuclease [Rhodococcus erythropolis SK121]
Length = 202
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
+ + V D E G + D+ + A + D + DD L
Sbjct: 4 VQDKLVWIDCEMTGLRLESDKLIEIAALVTDSDLNILGEGVDIVIHADDDAL 55
>gi|116494505|ref|YP_806239.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus casei ATCC 334]
gi|227535524|ref|ZP_03965573.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239631264|ref|ZP_04674295.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|116104655|gb|ABJ69797.1| DNA polymerase III, epsilon subunit related 3'-5' exonuclease
[Lactobacillus casei ATCC 334]
gi|227186846|gb|EEI66913.1| DNA-directed DNA polymerase III [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|239525729|gb|EEQ64730.1| DNA polymerase III alpha chain protein [Lactobacillus paracasei
subsp. paracasei 8700:2]
Length = 180
Score = 38.2 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 29/134 (21%)
Query: 60 ITGITPQKALRDGVVEAEFSRRIH--QFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
I GITP+ F + Q F P I+ +N FD R R +
Sbjct: 52 IHGITPEMVQDQ----PTFDQVWPHIQMFYTPGR-IVTAHNAPFDVSVMRLTLDRYGIAA 106
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
R+ ++D ++ F P + +L ++ A I + H+A
Sbjct: 107 ---------PRYQVIDTVKTSRQFLPKL----------PNHRLDTVSAALHIPLEHHHNA 147
Query: 178 KADVYATLALVWLI 191
AD YA ++
Sbjct: 148 LADSYA---CARIL 158
>gi|149041579|gb|EDL95420.1| REX2, RNA exonuclease 2 homolog (S. cerevisiae), isoform CRA_d
[Rattus norvegicus]
Length = 64
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
G D+ D+ + A + D + K D+ L
Sbjct: 2 TGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 41
>gi|186475543|ref|YP_001857013.1| oligoribonuclease [Burkholderia phymatum STM815]
gi|184192002|gb|ACC69967.1| Exonuclease RNase T and DNA polymerase III [Burkholderia phymatum
STM815]
Length = 207
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 34/197 (17%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAVFIT 61
+ V D E G D DR + A V + +K+ V +D+ L D
Sbjct: 18 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDKMVEGPVLAIHQSDETLGKMDDWNKNTH 77
Query: 62 GIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
G + + V EA+ + RI F P + N+I D F +
Sbjct: 78 GRSGLIDRVRASTVTEADATERIRAFLGQHVPPGKSPMCGNSICQD-----RRFMARWMP 132
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+ N D+ + + P + G + H
Sbjct: 133 ELETFFHYRN--LDVSTLKELCRRWQPAIYK--------------------GFQKRAMHT 170
Query: 177 AKADVYATLALVWLIRE 193
A AD++ ++ + RE
Sbjct: 171 ALADIHESIDELRYYRE 187
>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
Length = 231
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 33/188 (17%)
Query: 1 MTNHFVIYDYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEV---FFCKPADDYLPDPE 56
M+ + D ET G A R + AGV E + F D D
Sbjct: 1 MSMRQIFLDTETTGLYHAQGHRIIEIAGV------ELVNRRLTNNHFHVYLNPDREIDEA 54
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
A + GIT + F+ + +F + + +N FD + R
Sbjct: 55 AQEVHGITLEFLQDK----PRFADIVDEFLQFVSGADLIIHNAPFDIGFLNAELNRVGRQ 110
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV--NA 174
+ S +++D ++ P L L GI++
Sbjct: 111 NIEH------SVLEIIDTLKMAKEMRPGQRN-----------NLDALCRHYGIDNSSRTL 153
Query: 175 HDAKADVY 182
H A D
Sbjct: 154 HGALLDAE 161
>gi|73955120|ref|XP_853896.1| PREDICTED: similar to small fragment nuclease (predicted) [Canis
familiaris]
Length = 161
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
G D+ D+ + A + D + K D+ L
Sbjct: 74 TGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 113
>gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
IPO1609]
gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
IPO1609]
Length = 242
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 54/177 (30%), Gaps = 27/177 (15%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + A DR + V + F+ P + DP A+ + GIT +
Sbjct: 7 DTETTGLNAATGDRVIEIGCVEL-VNRRLTGRNLHFYINPEREI--DPGAMAVHGITNEF 63
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
AE I + I +N FD + F R S+ +G+
Sbjct: 64 VADKPKF-AEVVAEIRDYVQGAEAII---HNAAFDLGFLDMEFRRLGLPSF-REHLDGH- 117
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSF--KLQDLALANGIEHVNAHDAKADVY 182
+D + P S L ++N H H A D
Sbjct: 118 ----IDTLLEARRMFPG---------KRNSLDALCDRLGVSN--AHRTLHGALLDAE 159
>gi|322821002|gb|EFZ27456.1| hypothetical protein TCSYLVIO_6336 [Trypanosoma cruzi]
Length = 976
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 23 AQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT----GITPQKALRDGVVEAEF 78
+FAG+RVD++ +I +FF P D LP + + + R + E
Sbjct: 513 CRFAGLRVDKETNEI--YHMFFDPPPPDRLPY----VVNFDRVKSSTAQLHRVLLNEHRN 566
Query: 79 SRRIHQFFSVPN 90
+I ++
Sbjct: 567 WEKIRRWMMSEG 578
>gi|313681538|ref|YP_004059276.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
[Sulfuricurvum kujiense DSM 16994]
gi|313154398|gb|ADR33076.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
[Sulfuricurvum kujiense DSM 16994]
Length = 657
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 408 FPHTLSEKEKQDWL----EHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEY 463
+ TL+ E + L E R + + ++ L GE GD ++ +Y
Sbjct: 255 YFDTLTGLENRRRLTEKLEERHSVFLMIINIDSFQEINDLYGEPAGD----LILKEFAQY 310
Query: 464 LQWVIPKE 471
L+ ++PKE
Sbjct: 311 LKEIMPKE 318
>gi|254195663|ref|ZP_04902090.1| oligoribonuclease [Burkholderia pseudomallei S13]
gi|169652409|gb|EDS85102.1| oligoribonuclease [Burkholderia pseudomallei S13]
Length = 203
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 21 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 53
>gi|66968596|ref|YP_245473.1| putative transposase [Pseudomonas aeruginosa]
gi|66862678|emb|CAI46979.1| putative transposase [Pseudomonas aeruginosa]
gi|112553494|gb|ABI20463.1| transposase [uncultured bacterium]
Length = 275
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 40/194 (20%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFITG 62
D ET G D D + +I +V P D L P EA I
Sbjct: 90 DTETTGLG---D----------DAEICEITILDVTG-APILDTLVRPTRPIPVEATAIHK 135
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF-YRNFYDSYRWS 121
IT + E + + + ++ YN + FD R + +
Sbjct: 136 IT-DAMVASAPSWPEVAEQYAAAVA--GRTVVAYN-VAFDARLLRQTYQIHGITAPVLTT 191
Query: 122 WDNGNSRWDLLDV-MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ L+ Y S D +W KL + A G+ AH A AD
Sbjct: 192 -----ACAMLMYAEWHGEYDRSRDRWRW---------LKLIEAATDCGVAEDGAHRALAD 237
Query: 181 VYATLALVWLIREK 194
TL ++ ++ +
Sbjct: 238 ARMTLGVLRYLQRR 251
>gi|53720090|ref|YP_109076.1| oligoribonuclease [Burkholderia pseudomallei K96243]
gi|126451823|ref|YP_001067153.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
gi|134277998|ref|ZP_01764713.1| oligoribonuclease [Burkholderia pseudomallei 305]
gi|167816819|ref|ZP_02448499.1| oligoribonuclease [Burkholderia pseudomallei 91]
gi|167846725|ref|ZP_02472233.1| oligoribonuclease [Burkholderia pseudomallei B7210]
gi|217420377|ref|ZP_03451882.1| oligoribonuclease [Burkholderia pseudomallei 576]
gi|237813261|ref|YP_002897712.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
gi|242316244|ref|ZP_04815260.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
gi|59798009|sp|Q63S41|ORN_BURPS RecName: Full=Oligoribonuclease
gi|166215755|sp|A3NXT2|ORN_BURP0 RecName: Full=Oligoribonuclease
gi|52210504|emb|CAH36487.1| oligoribonuclease [Burkholderia pseudomallei K96243]
gi|126225465|gb|ABN89005.1| oligoribonuclease [Burkholderia pseudomallei 1106a]
gi|134251648|gb|EBA51727.1| oligoribonuclease [Burkholderia pseudomallei 305]
gi|217395789|gb|EEC35806.1| oligoribonuclease [Burkholderia pseudomallei 576]
gi|237503180|gb|ACQ95498.1| oligoribonuclease [Burkholderia pseudomallei MSHR346]
gi|242139483|gb|EES25885.1| oligoribonuclease [Burkholderia pseudomallei 1106b]
Length = 201
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 51
>gi|307709092|ref|ZP_07645551.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
SK564]
gi|307620038|gb|EFN99155.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
SK564]
Length = 816
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V + ++ + D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGKIVDHY-------STDVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPEMEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKIAQL 172
>gi|76810706|ref|YP_334337.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
gi|76580159|gb|ABA49634.1| oligoribonuclease [Burkholderia pseudomallei 1710b]
Length = 229
Score = 38.2 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 47 NLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDI 79
>gi|302518301|ref|ZP_07270643.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
gi|302427196|gb|EFK99011.1| DNA polymerase III subunit epsilon [Streptomyces sp. SPB78]
Length = 329
Score = 38.2 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 33/176 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A RVD + ++E P D P V+I G+T +
Sbjct: 25 DVETTGL-ARDDRIVSAAVYRVDAR-GEVEDHWYTLVNPERD----PGPVWIHGLTSEVL 78
Query: 69 LRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ I + S ++ +N + F + +
Sbjct: 79 EGAPLFP-----EIAEELSRRLDGRVLVAHNAV----------FDWSM---LAREYARAG 120
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + I + P+ KL+ LA G+E AH A D
Sbjct: 121 ITAPVRRRLCTIALAKELALPLPNH-------KLETLAAHFGVEQRRAHHALDDAR 169
>gi|256112395|ref|ZP_05453316.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
str. Ether]
gi|265993832|ref|ZP_06106389.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
str. Ether]
gi|262764813|gb|EEZ10734.1| DNA polymerase III subunit epsilon [Brucella melitensis bv. 3
str. Ether]
Length = 80
Score = 38.2 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITP 65
+++D ET G + DR + GV + ++ T F P + P+A+ + GI+
Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQGRQV-HPDALAVHGISN 61
Query: 66 QKALRDGVVEAEFSRRIHQFF 86
++ L V I F
Sbjct: 62 EQLLDKPV-----FAEILDEF 77
>gi|320011855|gb|ADW06705.1| Exonuclease RNase T and DNA polymerase III [Streptomyces
flavogriseus ATCC 33331]
Length = 241
Score = 38.2 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G DV DR A V D V P A I G+T
Sbjct: 12 FDTETTGVDVEEDRIVSAALVVQDAAG---GRLRVTRWLVNPGIPVPPGATEIHGLTDDH 68
Query: 68 ALRDGVVEAEFSRRIHQFFS 87
R+G A I + +
Sbjct: 69 LQRNGRWPAPVVEEIARSLA 88
>gi|134295109|ref|YP_001118844.1| oligoribonuclease [Burkholderia vietnamiensis G4]
gi|166215757|sp|A4JCK6|ORN_BURVG RecName: Full=Oligoribonuclease
gi|134138266|gb|ABO54009.1| Exonuclease, RNase T and DNA polymerase III [Burkholderia
vietnamiensis G4]
Length = 200
Score = 38.2 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDI 51
>gi|313889930|ref|ZP_07823570.1| putative ATP-dependent DNA helicase DinG [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121696|gb|EFR44795.1| putative ATP-dependent DNA helicase DinG [Streptococcus
pseudoporcinus SPIN 20026]
Length = 820
Score = 38.2 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 43/205 (20%)
Query: 1 MTNHFVIY---DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTE---VFFCKPADDYLP 53
MT Y D E + D R Q G+ + + I+ + K ++
Sbjct: 1 MTEQLTKYAVIDLEAT--NAGSDARIIQI-GIVIVENKKIIDRFQTDINPHSKLSEHIKS 57
Query: 54 DPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
+TGIT Q+ EFS+ Q F + C+ +N++FD +
Sbjct: 58 ------LTGITDQQLA----SAPEFSQVASQIFELIKDCVFVAHNVKFDANLLAEALFFE 107
Query: 114 FYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVN 173
++ +D + F P+ + + L LA + +
Sbjct: 108 GFELLTPR----------MDTVELAQVFFPNLEK----------YNLGHLAKNMDLHLAH 147
Query: 174 AHDAKADVYATLALVWLIREKKPKL 198
AH A D AT L + + K+
Sbjct: 148 AHTAIDDALAT---AKLFIKIQKKI 169
>gi|294811879|ref|ZP_06770522.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|326440385|ref|ZP_08215119.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
gi|294324478|gb|EFG06121.1| DNA polymerase III subunit epsilon [Streptomyces clavuligerus ATCC
27064]
Length = 334
Score = 38.2 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 54/176 (30%), Gaps = 33/176 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T
Sbjct: 24 DVETTGL-ARDDRIVSAAVYRLDAR-GEVEDHWYTLVNPERD----PGPVWIHGLT---- 73
Query: 69 LRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
D + A + I FS ++ +N + F + +
Sbjct: 74 -SDVLAGAPLFQDIADEFSQRLDGRVLVAHNAM----------FDWSM---IAREYARAR 119
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ I + P+ KL+ LA G+ AH A D
Sbjct: 120 RTAPTRQRLCTIALAKELRLPLPNH-------KLESLAAHFGVVQRQAHHALDDAR 168
>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
K96243]
gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC
23344]
gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC
10247]
gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
DM98]
gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
B7210]
gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
7894]
gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
NCTC 13177]
gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
112]
gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
BCC215]
gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
K96243]
gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
23344]
gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
10247]
gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pasteur 52237]
Length = 240
Score = 38.2 bits (88), Expect = 3.0, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARAGDRIIEIGCVEL-LNRRLTGKNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRD 71
Sbjct: 64 LSDK 67
>gi|237649440|ref|ZP_04523692.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae CCRI 1974]
Length = 831
Score = 38.2 bits (88), Expect = 3.0, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 21 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 71
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 72 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 124
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 125 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 165
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 166 ALSDAQATAELLLFLREKMTQL 187
>gi|296129190|ref|YP_003636440.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena
DSM 20109]
gi|296021005|gb|ADG74241.1| Exonuclease RNase T and DNA polymerase III [Cellulomonas flavigena
DSM 20109]
Length = 229
Score = 38.2 bits (88), Expect = 3.0, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPA-------DDYLPD 54
+ V D E G D+ D + A V D + + P +D++
Sbjct: 23 NDRIVWVDCEMTGLDLVHDALVEVAAVVTDSELNVLGDGVDVVIAPPAEALAQMNDFVRS 82
Query: 55 PEAVFIT--GITPQKALRDGVVEAEFSRRIHQFFSVP 89
T G+ P+ L GV E ++ ++
Sbjct: 83 ----MHTTSGLLPE--LEHGVTLEEAEAQVLEYVRTW 113
>gi|25028926|ref|NP_738980.1| oligoribonuclease [Corynebacterium efficiens YS-314]
gi|259507990|ref|ZP_05750890.1| oligoribonuclease [Corynebacterium efficiens YS-314]
gi|29611789|sp|Q8FMX9|ORN_COREF RecName: Full=Oligoribonuclease
gi|23494213|dbj|BAC19180.1| putative oligoribonuclease [Corynebacterium efficiens YS-314]
gi|259164485|gb|EEW49039.1| oligoribonuclease [Corynebacterium efficiens YS-314]
Length = 221
Score = 38.2 bits (88), Expect = 3.0, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D+ + A + D +
Sbjct: 21 LVWVDLEMTGLDLERHVIVEVAALVTDANLNILGE 55
>gi|329938978|ref|ZP_08288352.1| exonuclease [Streptomyces griseoaurantiacus M045]
gi|329301863|gb|EGG45756.1| exonuclease [Streptomyces griseoaurantiacus M045]
Length = 242
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G DV DR A V + V +P P EA + G+T +
Sbjct: 12 FDTETTGVDVEGDRIVSAAVVVQEAAG---ARPRVRRWLVDPG-VPVPAEATAVHGLTEE 67
Query: 67 KALRDGVVEAEFSRRIHQFF 86
R+G A R +
Sbjct: 68 HLRRNGRWPAPVMREMADEL 87
>gi|225850145|ref|YP_002730379.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
gi|225645024|gb|ACO03210.1| DNA polymerase III subunit epsilon [Persephonella marina EX-H1]
Length = 205
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
F I D ET G + + + A ++ Q I KP + +P+ + TGIT
Sbjct: 11 FTIIDIETTGFNPESNDIIEIAAIK--YQGNIILDRFWSLIKPEIELIPEHISKL-TGIT 67
Query: 65 PQKALRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS----RNIFYRNFYDS 117
+ V+ +F I NT ++G+N IRFD + + I + +
Sbjct: 68 TAMVIDQPTVDKVLPDFLNFIE------NTILVGHN-IRFDLAFLNKKAKEILNKTIKNP 120
Query: 118 YRWS 121
+ +
Sbjct: 121 FICT 124
>gi|182683721|ref|YP_001835468.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
gi|182629055|gb|ACB90003.1| ATP-dependent DNA helicase [Streptococcus pneumoniae CGSP14]
Length = 816
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|169628623|ref|YP_001702272.1| oligoribonuclease [Mycobacterium abscessus ATCC 19977]
gi|169240590|emb|CAM61618.1| Probable oligoribonuclease [Mycobacterium abscessus]
Length = 208
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ V D E G D+ D+ + A + D +
Sbjct: 6 DELVWIDCEMTGLDLGSDKLIEIAALVTDGDLNILGE 42
>gi|126011010|ref|YP_001039760.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
ambifaria phage BcepF1]
gi|119712586|gb|ABL96807.1| gram-positive type DNA polymerase III alpha subunit [Burkholderia
ambifaria phage BcepF1]
Length = 197
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 5 FVIYDYETFGR--DV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
F ++D ET G R +FAG+ D I T F C +
Sbjct: 3 FTVFDTETTGLPSHPLAPLDRQPRIIEFAGIVTDG--RDILHTLEFRC--NPGVALEEII 58
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPN 90
ITG+T + + F + FF
Sbjct: 59 TKITGLTDADLRDQPDI-SHFFGELKSFFGKEP 90
>gi|328881184|emb|CCA54423.1| putative DNA polymerase III [Streptomyces venezuelae ATCC 10712]
Length = 242
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET G DV DR A V D V +P PE A + G+T
Sbjct: 13 FDTETTGVDVEEDRIVSAALVVQDT---VGARPRVTRWLVNPG-IPVPEGATAVHGLTDD 68
Query: 67 KALRDGVVEA----EFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRN 113
R G A E +R + + + ++ N FD R+
Sbjct: 69 HLQRYGRWPAPVMEELARALAEQIAAGRPLVV--MNAPFDLTILDRELRRH 117
>gi|149003435|ref|ZP_01828324.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP14-BS69]
gi|237821000|ref|ZP_04596845.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae CCRI 1974M2]
gi|147758618|gb|EDK65616.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP14-BS69]
Length = 816
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|134044532|ref|YP_001101863.1| putative exonuclease [Yersinia ruckeri]
gi|133904895|gb|ABO40912.1| putative exonuclease [Yersinia ruckeri]
Length = 289
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 47/206 (22%), Positives = 69/206 (33%), Gaps = 28/206 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC-KPADDYLPDPEAVFITGITPQK 67
D ET G D+ + A D V C + DP+A+ + GI +
Sbjct: 110 DTETTGLG-ERDQVIELA--VTDI------RGAVLLCTRLRPTVEIDPQAMGVHGINEAE 160
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ + + + + S + I N FD R F D W W N
Sbjct: 161 LSNEPTW-NQVAPALARLLSGRHLVIF---NSSFDSRMLRQT-ASAFGDQLSW-WQEQNC 214
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE-HVNAHDAKADVYATLA 186
L + A AF + G S L D+ G+ AH A D AT
Sbjct: 215 ---LCAMKLAADAFGS------TNRHGTIS--LADVTCEAGVSWKGRAHSAATDAIATAD 263
Query: 187 LVWLIREKKPKLFEYLYDYRNKNQLR 212
LV I + + L L + ++K L
Sbjct: 264 LVTEIAKVQRDLVVQLQELQSKGNLE 289
>gi|315224304|ref|ZP_07866138.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
ochracea F0287]
gi|314945694|gb|EFS97709.1| DNA-directed DNA polymerase III epsilon subunit [Capnocytophaga
ochracea F0287]
Length = 442
Score = 38.2 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 55/215 (25%)
Query: 5 FVIYDYETFG--------RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ I D ET G D+A QF G + Q+ + + E +P +++
Sbjct: 2 YAILDIETTGGKYNEEGITDIA---IYQFNGHEITDQFISLINPE----RPIQEFV---- 50
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI K LR+ E ++RI + + I+G+N FD + F R
Sbjct: 51 -TKLTGIN-NKMLRNAPKFYEVAKRIVEITTD--CIIVGHNA-AFDYRILQTEFRRLG-- 103
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D + S I S+ L L + GI + H
Sbjct: 104 ------------YDFVRTTLCTVELSERLIP------NKESYSLGKLVRSLGIPVSDRHR 145
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
A D ATL KLF+YL + K +
Sbjct: 146 ASGDALATL-----------KLFKYLLEKDTKKDI 169
>gi|315658260|ref|ZP_07911132.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
lugdunensis M23590]
gi|315496589|gb|EFU84912.1| DNA-directed DNA polymerase III epsilon subunit [Staphylococcus
lugdunensis M23590]
Length = 893
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 27/192 (14%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
+ + D ET G + D Q G+ R + + + D P +T
Sbjct: 4 TSYAVVDLETTGNQLDYDEIIQI-GITFVRDQKIVG---TYHSMINTDVEIPPFIQALTS 59
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
I + L+ E + +++ + + +N + FD + + F RN
Sbjct: 60 IE-EDMLKQAPYFHEVAEDVYKQLKD--SVFVAHN-VSFDLTFIKKAFKRN------HIH 109
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
D +++ + + P+ S++L +LA A+ I NAH A D
Sbjct: 110 FQPKKVIDTVELFKIAF---------PTDK----SYQLSELAEAHHIPLDNAHRADEDAT 156
Query: 183 ATLALVWLIREK 194
T L+ +K
Sbjct: 157 TTAKLMIKAFQK 168
>gi|312199001|ref|YP_004019062.1| exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
gi|311230337|gb|ADP83192.1| Exonuclease RNase T and DNA polymerase III [Frankia sp. EuI1c]
Length = 238
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES-TEVFFCKPAD 49
V D E G D A D + A + D + + ++ P
Sbjct: 16 LVWIDCEMTGLDPASDVLLEVACLVTDGELNVVGDGVDLVISAPDP 61
>gi|195470929|ref|XP_002087759.1| GE18196 [Drosophila yakuba]
gi|194173860|gb|EDW87471.1| GE18196 [Drosophila yakuba]
Length = 361
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 55 PEAVFITGITPQKALRDGVVEAEFSRRIHQFFSV-PNT-CIIGYNNIRFDDYYSRNIF 110
PEA ITG++ R+ ++A+ ++ I+ F P C++ +N FD R F
Sbjct: 91 PEAERITGLSNYLLERESKLDADAAQLINGFLKHLPGPVCLVAHNGWGFDFPILRQTF 148
>gi|195054679|ref|XP_001994252.1| GH11306 [Drosophila grimshawi]
gi|193896122|gb|EDV94988.1| GH11306 [Drosophila grimshawi]
Length = 187
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK--------IESTEVFFCKPADDYLPD 54
V D E G D+ D+ + + + D+ I + + + +
Sbjct: 14 IVWMDLEMTGLDINTDQILELSCIITDKHLNIKSEGPSFAIRHPQHVYDNMNEWCMKH 71
>gi|189183653|ref|YP_001937438.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Ikeda]
gi|189180424|dbj|BAG40204.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Ikeda]
Length = 222
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 15/109 (13%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D R + V +D +I +T ++ P D EA + G++
Sbjct: 8 DTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDI--SKEAYKVHGLSRDF 65
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIG----YNNIRFDDYYSRNIFYR 112
R I F I G +N FD + + +R
Sbjct: 66 LSDKPK-----FREIVDEFLQ---FIDGAQLIMHNANFDMQFLNSELFR 106
>gi|269955883|ref|YP_003325672.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
cellulosilytica DSM 15894]
gi|269304564|gb|ACZ30114.1| Exonuclease RNase T and DNA polymerase III [Xylanimonas
cellulosilytica DSM 15894]
Length = 212
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 23/101 (22%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEA---- 57
+ V D E G D D + A V D + ++ D L P A
Sbjct: 7 NDRIVWIDCEMTGLDARADALIEVAAVVTDSELNVLDDGI--------DVLIAPPAAALE 58
Query: 58 -------VFIT--GITPQKALRDGVVEAEFSRRIHQFFSVP 89
T G+ + A + EAE +++ +
Sbjct: 59 GMGDFVRTMHTTSGLLDELAAGATLAEAE--QQVLAYIKRW 97
>gi|296158296|ref|ZP_06841128.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
gi|295891632|gb|EFG71418.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp. Ch1-1]
Length = 207
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 64/209 (30%), Gaps = 58/209 (27%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + +++ V +D+ L A
Sbjct: 19 NLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL----AGMDQWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV---PNTCIIGYNNIRFDDYYS------ 106
G + + V EA+ + +I F SV P + N+I D +
Sbjct: 75 QNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPD 134
Query: 107 --RNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLA 164
R YRN D+ + + P +
Sbjct: 135 LERFFHYRNL---------------DVSTLKELCRRWQPAIYK----------------- 162
Query: 165 LANGIEHVNAHDAKADVYATLALVWLIRE 193
G + H A AD++ ++ + RE
Sbjct: 163 ---GFQKRAMHTALADIHESIDELKYYRE 188
>gi|297198375|ref|ZP_06915772.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
gi|197714433|gb|EDY58467.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
Length = 241
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G DV DR A V D V +P P A + G+T +
Sbjct: 12 FDTETTGVDVETDRIVSAAVVVQDAAGT---RPRVSRWLVNPG-VPVPAGATAVHGLTEE 67
Query: 67 KALRDGVVEAEFSRRIHQFFS 87
R+G A I + +
Sbjct: 68 HLQRNGRWPAPVMFEIAETLA 88
>gi|149010565|ref|ZP_01831936.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP19-BS75]
gi|147765046|gb|EDK71975.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP19-BS75]
Length = 816
Score = 38.2 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|269104806|ref|ZP_06157502.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161446|gb|EEZ39943.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 249
Score = 38.2 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 32/195 (16%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
FV D ET G D D+ V +C+ + ++ +P E+V
Sbjct: 59 FVALDLETTGLDSQQDQIISVGLVPFTLD--------RIYCRQSAHWVVNPHRLLNEESV 110
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNI--RFDDYYSRNIFYRNFYD 116
I GIT + + ++ Q + ++ Y NI F +
Sbjct: 111 VIHGITDSEVQDAPDLRVIL-EQVLQALAGK-IVVVHYKNIERGFLNQALLKRLGEGIEF 168
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGAT--SFKLQDLALANGIEHVNA 174
D LD+ + +R G S +L G+
Sbjct: 169 PV----------VDTLDL--EAAIQYRQCRGFFNRLKGKKPGSVRLGHARERYGLPTYQP 216
Query: 175 HDAKADVYATLALVW 189
H A D A+ L+
Sbjct: 217 HHALTDALASAELLQ 231
>gi|170782319|ref|YP_001710652.1| DNA polymerase III subunit epsilon [Clavibacter michiganensis
subsp. sepedonicus]
gi|169156888|emb|CAQ02056.1| putative exonuclease [Clavibacter michiganensis subsp.
sepedonicus]
Length = 233
Score = 38.2 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------E 56
+ +D ET G DV R V +D Q E +E D+L DP
Sbjct: 7 DTLASFDLETTGVDVETARIVTACIVVLDAQGEVVERH---------DWLADPGVEIPAG 57
Query: 57 AVFITGITPQKALRDGVVE----AEFSRRIHQFFSV 88
A I G+T ++A +G E I + F+
Sbjct: 58 AAAIHGVTTERARAEGRDAGAVVLEIVTTIREMFAR 93
>gi|169833275|ref|YP_001694265.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae Hungary19A-6]
gi|168995777|gb|ACA36389.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae Hungary19A-6]
gi|327390159|gb|EGE88502.1| putative dnaQ exonuclease/DinG family helicase [Streptococcus
pneumoniae GA04375]
Length = 816
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
MSMB43]
Length = 241
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + S F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARAGDRIIEVGCVEL-LNRRLTGSNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRD 71
Sbjct: 64 LSDK 67
>gi|307127646|ref|YP_003879677.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
pneumoniae 670-6B]
gi|306484708|gb|ADM91577.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae 670-6B]
Length = 816
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|253988342|ref|YP_003039698.1| DNA polymerase III subunit epsilon [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
asymbiotica]
Length = 248
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 9 DYETFGRDV-----ALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
D ET G + + + V V + KP D L DPEA + GI
Sbjct: 12 DTETTGMNKLGVHYEGHKIIEIGAVEV-VNRRLTGRHFHIYVKP--DRLVDPEAFEVHGI 68
Query: 64 TPQKALRDGV 73
+ + +
Sbjct: 69 SDEFLQDKPL 78
>gi|225856476|ref|YP_002737987.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae P1031]
gi|225724714|gb|ACO20566.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae P1031]
Length = 816
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|224541223|ref|ZP_03681762.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
15897]
gi|224525868|gb|EEF94973.1| hypothetical protein CATMIT_00376 [Catenibacterium mitsuokai DSM
15897]
Length = 212
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 34/194 (17%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFC----KPADDYLPDPEA 57
+ +++ D E G + +R + A ++ +++ + D L +
Sbjct: 12 PDTYIVVDIEATGLNPETERLIEVAAIKY-INHKEVARFSELINPLRDQLPVDLLDKDKT 70
Query: 58 VFI-------TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF 110
++I TGI+ + L D E + R +F N IIG+N +RFD R I
Sbjct: 71 IYISDFIENLTGIS-NRMLHDARGEKDVLREYIKFIG--NDVIIGHN-VRFD---IRFI- 122
Query: 111 YRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE 170
Y Y + N D +D ++ + ++ ++L+DLA I+
Sbjct: 123 YDALLRDYGVLFQN-----DYIDTLKIARKLLHEDLK---------RYRLKDLADHYHID 168
Query: 171 HVNAHDAKADVYAT 184
+ +AH A D T
Sbjct: 169 YSHAHRAVNDCEIT 182
>gi|218670823|ref|ZP_03520494.1| DNA polymerase III subunit epsilon [Rhizobium etli GR56]
Length = 164
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 32/107 (29%), Gaps = 18/107 (16%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFF------CKPADDYLPDPEAV 58
VI D ET G + D + V I + +P PE
Sbjct: 65 VILDTETTGLNHRNDEIIEIGAVAFTFDDDRAIGDIVGIYGGLQQPSRPIP-----PEIT 119
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
+TGIT + S I P II +N FD +
Sbjct: 120 RLTGITDAMVEGQVIDMRSLSALIE-----PADLIIAHNA-GFDRPF 160
>gi|318041263|ref|ZP_07973219.1| putative DNA polymerase III, epsilon subunit [Synechococcus sp.
CB0101]
Length = 304
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 56/185 (30%), Gaps = 37/185 (20%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFF--CKPADDYLPDPEAV 58
+ +I D ET G D DR + V D + S C+ A
Sbjct: 71 VPQRLLILDTETTGLDPQRDRCIELGAVLFDVPRRSVLSQVSLLLPCEQNP-------AQ 123
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
+ GI P + + + + + + + +N FD R F +
Sbjct: 124 AVNGIDP-RLTQQPQPWQQGLQWFEALLAASDVVVA--HNAAFD----RQWFGIAPLPAI 176
Query: 119 RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDD--GATSFKLQDLALANGIEHVNAHD 176
W S D I+WP+ S + DLALA + AH
Sbjct: 177 DKPWL--CSMED---------------IRWPADRHLRSNPSVR--DLALAYSVPVWAAHR 217
Query: 177 AKADV 181
A D
Sbjct: 218 ALTDC 222
>gi|225861294|ref|YP_002742803.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae Taiwan19F-14]
gi|298230625|ref|ZP_06964306.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298255368|ref|ZP_06978954.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503192|ref|YP_003725132.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
pneumoniae TCH8431/19A]
gi|225726410|gb|ACO22261.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238787|gb|ADI69918.1| DnaQ family exonuclease/DinG family helicase [Streptococcus
pneumoniae TCH8431/19A]
Length = 816
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|168490899|ref|ZP_02715042.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC0288-04]
gi|221231602|ref|YP_002510754.1| exonuclease [Streptococcus pneumoniae ATCC 700669]
gi|225854318|ref|YP_002735830.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae JJA]
gi|183574742|gb|EDT95270.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC0288-04]
gi|220674062|emb|CAR68575.1| putative exonuclease [Streptococcus pneumoniae ATCC 700669]
gi|225723482|gb|ACO19335.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae JJA]
Length = 816
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|168484461|ref|ZP_02709413.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC1873-00]
gi|172042316|gb|EDT50362.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC1873-00]
gi|332203958|gb|EGJ18025.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
GA47368]
Length = 816
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|148985845|ref|ZP_01818939.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP3-BS71]
gi|148990415|ref|ZP_01821581.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP6-BS73]
gi|168575465|ref|ZP_02721401.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae MLV-016]
gi|194397188|ref|YP_002037447.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae G54]
gi|307067407|ref|YP_003876373.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
gi|147921991|gb|EDK73115.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP3-BS71]
gi|147924320|gb|EDK75413.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP6-BS73]
gi|183578476|gb|EDT99004.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae MLV-016]
gi|194356855|gb|ACF55303.1| Dna polymerase III, epsylon subunit/ATP-dependent helicase DinG
[Streptococcus pneumoniae G54]
gi|301799817|emb|CBW32386.1| putative exonuclease [Streptococcus pneumoniae OXC141]
gi|306408944|gb|ADM84371.1| Rad3-related DNA helicase [Streptococcus pneumoniae AP200]
Length = 816
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|104784044|ref|YP_610542.1| exonuclease [Pseudomonas entomophila L48]
gi|95113031|emb|CAK17759.1| putative exonuclease [Pseudomonas entomophila L48]
Length = 236
Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 62/191 (32%), Gaps = 33/191 (17%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-----EAVFITGI 63
D ET G ++ D+ V IE + +P + L P +V I +
Sbjct: 45 DLETSGLNLNRDQVLSIGAV-------AIEDGAIDLGRPFERTLHRPTQKTNASVLIHRL 97
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
P AL G AE + F + F + + + R DS
Sbjct: 98 GPS-ALAAGCDPAEALLDLLAFIGDSP-------VLAFHAPFDQRMLARALKDSLGLRLQ 149
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ LDV +PD + R+ G L D G+E H A AD
Sbjct: 150 HV-----FLDVAELAPMLNPDTV---LREAG-----LDDWIARFGLEVQARHHASADAQV 196
Query: 184 TLALVWLIREK 194
T L ++ +
Sbjct: 197 TAELALILFSQ 207
>gi|301793959|emb|CBW36355.1| putative exonuclease [Streptococcus pneumoniae INV104]
Length = 816
Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|114776398|ref|ZP_01451443.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
PV-1]
gi|114553228|gb|EAU55626.1| DNA polymerase III subunit epsilon [Mariprofundus ferrooxydans
PV-1]
Length = 310
Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 39/187 (20%), Positives = 53/187 (28%), Gaps = 43/187 (22%)
Query: 9 DYETFGRDVALDRPAQ--FAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF------I 60
D ET G D D + F D +I + D DP A +
Sbjct: 43 DTETTGLDTTADTIIELGFVAFSYDAGSGRIYEVLHNY-----DGFEDPGAPLSDVVKQL 97
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRW 120
TGI+ + +AE I + + I +N FD
Sbjct: 98 TGISDAMVAGQRLDDAE----IETWLKKADLLIA--HNAAFDRPMLERRL------PLAA 145
Query: 121 SWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD 180
+ + D I W +G S KL +A G H A D
Sbjct: 146 EKNWACTFCD---------------INW--DAEGIASRKLDYIACRLGYFFDG-HRAVVD 187
Query: 181 VYATLAL 187
ATL L
Sbjct: 188 AQATLHL 194
>gi|148992472|ref|ZP_01822167.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP9-BS68]
gi|149007688|ref|ZP_01831305.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP18-BS74]
gi|168489814|ref|ZP_02714013.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae SP195]
gi|147760843|gb|EDK67814.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP18-BS74]
gi|147928789|gb|EDK79802.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP9-BS68]
gi|183571801|gb|EDT92329.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae SP195]
gi|332077219|gb|EGI87681.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
GA17545]
Length = 816
Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1710b]
gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC
10229]
gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
668]
gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1106a]
gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
305]
gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
576]
gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237811761|ref|YP_002896212.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
MSHR346]
gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8
horse 4]
gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106b]
gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
10399]
gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1655]
gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
S13]
gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710a]
gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
406e]
gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
2002721280]
gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710b]
gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
10229]
gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
668]
gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106a]
gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
305]
gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
2002721280]
gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
406e]
gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
10399]
gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
S13]
gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1655]
gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
576]
gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
MSHR346]
gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8
horse 4]
gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106b]
gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710a]
Length = 253
Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + F+ P D DP A+ + G+T +
Sbjct: 20 DTETTGLNARAGDRIIEIGCVEL-LNRRLTGKNLHFYVNPERD--SDPGALAVHGLTTEF 76
Query: 68 ALRD 71
Sbjct: 77 LSDK 80
>gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
Length = 244
Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 54/178 (30%), Gaps = 27/178 (15%)
Query: 6 VIYDYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
+I D ET G + DR + V + + F+ P D DP A+ + G+T
Sbjct: 4 LILDTETTGLNARTGDRILELGCVEL-VNRRLTGNNLHFYINPERD--SDPGALAVHGLT 60
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+ AE + + F II +N FD + F
Sbjct: 61 TEFLSDKPKF-AEIADQFRD-FIQGADLII--HNAPFDIGFLDAEFALLGLPPVST---- 112
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIE--HVNAHDAKAD 180
+++D + P S L L GI H H A D
Sbjct: 113 --YCGEIIDTLARAKQMFPG---------KRNS--LDALCDRFGISNAHRTLHGALLD 157
>gi|303255784|ref|ZP_07341825.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS455]
gi|303260270|ref|ZP_07346241.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae SP-BS293]
gi|303261476|ref|ZP_07347424.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae SP14-BS292]
gi|303264144|ref|ZP_07350065.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS397]
gi|303266246|ref|ZP_07352137.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS457]
gi|303268684|ref|ZP_07354474.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS458]
gi|301801646|emb|CBW34344.1| putative exonuclease [Streptococcus pneumoniae INV200]
gi|302597168|gb|EFL64273.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS455]
gi|302637610|gb|EFL68097.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae SP14-BS292]
gi|302638594|gb|EFL69058.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae SP-BS293]
gi|302641744|gb|EFL72101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS458]
gi|302644176|gb|EFL74432.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS457]
gi|302646549|gb|EFL76775.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae BS397]
Length = 816
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|257056841|ref|YP_003134673.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
viridis DSM 43017]
gi|256586713|gb|ACU97846.1| oligoribonuclease (3'->5' exoribonuclease) [Saccharomonospora
viridis DSM 43017]
Length = 202
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
MT+ V D E G D+A D + A + D + +
Sbjct: 1 MTDRLVWIDCEMTGLDLAKDALIEIAVLVTDAELNVLGD 39
>gi|168486184|ref|ZP_02710692.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC1087-00]
gi|183570792|gb|EDT91320.1| putative DnaQ family exonuclease/DinG family helicase
[Streptococcus pneumoniae CDC1087-00]
Length = 816
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|332204813|gb|EGJ18878.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
GA47901]
Length = 816
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|332202666|gb|EGJ16735.1| dnaQ exonuclease/DinG family helicase [Streptococcus pneumoniae
GA41317]
Length = 816
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|307706367|ref|ZP_07643179.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
SK321]
gi|307618285|gb|EFN97440.1| dnaQ family exonuclease/DinG family helicase [Streptococcus mitis
SK321]
Length = 816
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ ++ +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLVQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMAQL 172
>gi|225858612|ref|YP_002740122.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae 70585]
gi|225720171|gb|ACO16025.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae 70585]
Length = 816
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|254498741|ref|ZP_05111457.1| oligoribonuclease [Legionella drancourtii LLAP12]
gi|254352069|gb|EET10888.1| oligoribonuclease [Legionella drancourtii LLAP12]
Length = 173
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 11 ETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF 43
E G D +R + A V D I VF
Sbjct: 2 EMTGLDPEENRIIEIATVVTDPHLNIIGEGPVF 34
>gi|148239379|ref|YP_001224766.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
gi|147847918|emb|CAK23469.1| DNA polymerase III epsilon subunit [Synechococcus sp. WH 7803]
Length = 272
Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 59/189 (31%), Gaps = 47/189 (24%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF---FCKPADDYLPDPEAV 58
+ +I D ET G D D+ + + I +V C D+ P A
Sbjct: 41 PSRLLIVDTETTGLDADRDQCLELGAI-----LFSIPHRQVLAQMSCLLPVDHNP---AE 92
Query: 59 FITGITPQKALR------DGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYR 112
I I P + R DG+ + ++ +N FD R F R
Sbjct: 93 AINRI-PAEVSRLDQPWGDGLA-------WFERMMASADYLVAHNA-AFD----RQWFGR 139
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHV 172
W + D+ +WP + + DLALA GI
Sbjct: 140 GSLPEATRPWL--CTLEDV---------------RWPEARNLRARPSVIDLALAYGIPVW 182
Query: 173 NAHDAKADV 181
+AH A D
Sbjct: 183 SAHRALTDC 191
>gi|148997118|ref|ZP_01824772.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP11-BS70]
gi|147756818|gb|EDK63858.1| DnaQ family exonuclease/DinG family helicase, putative
[Streptococcus pneumoniae SP11-BS70]
Length = 816
Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +REK +L
Sbjct: 151 ALSDAQATAELLLFLREKMTQL 172
>gi|148284671|ref|YP_001248761.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Boryong]
gi|146740110|emb|CAM80283.1| DNA polymerase III epsilon chain [Orientia tsutsugamushi str.
Boryong]
Length = 222
Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D R + V +D +I +T ++ P D EA + G++
Sbjct: 8 DTETSGLDHKQGHRIIEIGAVELDSDCTEIRNTFHYYINPERDI--SKEAYKVHGLSRDF 65
Query: 68 ALRDGVVEAEFSRRIHQFFSVP-NTCIIGYNNIRFDDYYSRNIFYR 112
R I F + + +N FD + + +R
Sbjct: 66 LSDKPK-----FREIVDEFLQFIDRAQLIMHNANFDMQFLNSELFR 106
>gi|34496475|ref|NP_900690.1| DNA-directed DNA polymerase III subunit epsilon [Chromobacterium
violaceum ATCC 12472]
gi|34102328|gb|AAQ58694.1| probable DNA-directed DNA polymerase III (epsilon subunit)
[Chromobacterium violaceum ATCC 12472]
Length = 481
Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 36/192 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G ++A DR + V +D + + S V +P ++ + +TGI+ +
Sbjct: 10 DLETTGGNIARDRITEVGMVLIDGERVERLSWLVNPGQPIPPFIEN-----MTGISNEMV 64
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
G FS + + ++ +N RFD + +N F R+
Sbjct: 65 A--GAPP--FSAQADELLDRLQGRLLLAHNARFDYGFLKNEFRRHGLRFQAR-------- 112
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK--LQDLALANGIEHVNAHDAKADVYATLA 186
L ++ P FK L L +GI+ H A AD A
Sbjct: 113 --ALCTVKLSRRLYPQ------------HFKHSLDSLIARHGIDMPERHRALADAEA--- 155
Query: 187 LVWLIREKKPKL 198
+ IR + +L
Sbjct: 156 VYRFIRIAEAEL 167
>gi|89071983|ref|ZP_01158579.1| oxidoreductase, FAD-binding, putative [Photobacterium sp. SKA34]
gi|89052084|gb|EAR57535.1| oxidoreductase, FAD-binding, putative [Photobacterium sp. SKA34]
Length = 960
Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 371 QIMDRILRTAPE--QLSTLNLPFS-DRRLPELFF--RYRARNFPHTLSEKEKQDWLEHRK 425
D+ R P +L L + D R + YR N P LS KE E R+
Sbjct: 623 ARFDQFHRAYPNATKLFELKAKWDSDYRFRHCLWDKYYRQNNDPTLLSPKEINT-SEFRQ 681
Query: 426 KMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINALYEYL 464
T + + + LQ++ Y + +++A +Y+
Sbjct: 682 IYNTVKQRDAFYLFLQNIYHLYPEHLFHQLIMDA-CQYI 719
>gi|71019943|ref|XP_760202.1| hypothetical protein UM04055.1 [Ustilago maydis 521]
gi|46099747|gb|EAK84980.1| hypothetical protein UM04055.1 [Ustilago maydis 521]
Length = 627
Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 26/136 (19%)
Query: 229 MFGASRSNTALIAP-VAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGL 287
M+GA + AP + P+Y ++ D VF ++ SH
Sbjct: 1 MYGAPQP--GYGAPGLQPQPQYGYVPPPVDIGSDPGVFAT---------MYNSH------ 43
Query: 288 VPVPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNK 347
+K + N PI+ + +H R +CL++ +++ ++R A+Y
Sbjct: 44 ----LKSLTFNSKPIITNLTVIAHDHAARMSAVVAKCLDD-HIMQSHPSIR--LPALYTL 96
Query: 348 PYTSSSQ-DVDSQLYD 362
S + +QL+
Sbjct: 97 DSISKNVGHPYTQLWS 112
>gi|302537604|ref|ZP_07289946.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
gi|302446499|gb|EFL18315.1| DNA polymerase III subunit epsilon [Streptomyces sp. C]
Length = 253
Score = 37.9 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP-EAVFITGITPQ 66
+D ET G + R A V V AD +P P EA I GI+ +
Sbjct: 22 FDLETTGTEPGESRIVTAAVVEVRG-----GEVRARRGWLADPGIPIPGEAAAIHGISTE 76
Query: 67 KALRDGVV 74
+A+ +G
Sbjct: 77 RAVAEGRP 84
>gi|121591065|ref|ZP_01678378.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
2740-80]
gi|121729644|ref|ZP_01682121.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
gi|147675462|ref|YP_001218570.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
gi|153803140|ref|ZP_01957726.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
MZO-3]
gi|153819596|ref|ZP_01972263.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
8457]
gi|229506903|ref|ZP_04396411.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
gi|229509276|ref|ZP_04398759.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
gi|229512692|ref|ZP_04402160.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|229516220|ref|ZP_04405668.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
gi|229520981|ref|ZP_04410402.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|229527205|ref|ZP_04416598.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|229606416|ref|YP_002877064.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
gi|254851434|ref|ZP_05240784.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
gi|255744098|ref|ZP_05418052.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
gi|262161990|ref|ZP_06031007.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
gi|262167979|ref|ZP_06035678.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
gi|262192561|ref|ZP_06050711.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|298500931|ref|ZP_07010733.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
gi|121547098|gb|EAX57233.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
2740-80]
gi|121628578|gb|EAX61057.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae V52]
gi|124121331|gb|EAY40074.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
MZO-3]
gi|126509852|gb|EAZ72446.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae NCTC
8457]
gi|146317345|gb|ABQ21884.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|229335213|gb|EEO00697.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|229341866|gb|EEO06867.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|229346646|gb|EEO11616.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
gi|229350202|gb|EEO15154.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|229353591|gb|EEO18528.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
gi|229356008|gb|EEO20927.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
gi|229369071|gb|ACQ59494.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
gi|254847139|gb|EET25553.1| DNA polymerase III subunit epsilon [Vibrio cholerae MO10]
gi|255738363|gb|EET93754.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
gi|262023512|gb|EEY42214.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
gi|262028368|gb|EEY47024.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
gi|262031606|gb|EEY50194.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|297540435|gb|EFH76494.1| DNA polymerase III subunit epsilon [Vibrio cholerae MAK 757]
gi|327483170|gb|AEA77577.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3894-4]
Length = 209
Score = 37.9 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 24/177 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET D A + VD + + EV C P D +V I I Q
Sbjct: 34 DCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRIRHQD 90
Query: 68 ALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
DG+ E E + I + P ++GY+ IR+D ++ N
Sbjct: 91 LH-DGLSEKEALLQLIEFIGNRP---LVGYH-IRYDKTILDIACRKHLGFPLP------N 139
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
L++V + + + D L+ + + + HDA D A
Sbjct: 140 R---LIEVSQIYHDKLEKHLPNAYFD-----LSLEAICRHLDLPLQDKHDALQDAIA 188
>gi|227495351|ref|ZP_03925667.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
gi|226831221|gb|EEH63604.1| exoribonuclease II [Actinomyces coleocanis DSM 15436]
Length = 207
Score = 37.9 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 1 MTNHF-----VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
MT ++ V D E G DV D + A V D + ++ KP+ + L
Sbjct: 1 MTINYPARPLVWIDCEMTGLDVEKDALVEVAVVVTDEELNLLDPGIDLLIKPSAEAL 57
>gi|328774277|gb|EGF84314.1| hypothetical protein BATDEDRAFT_9096 [Batrachochytrium
dendrobatidis JAM81]
Length = 188
Score = 37.9 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D+ D + A + D ++
Sbjct: 10 LVWIDLEMTGLDLERDVIIEIACIITDGNLNAVQE 44
>gi|295677244|ref|YP_003605768.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
CCGE1002]
gi|295437087|gb|ADG16257.1| Exonuclease RNase T and DNA polymerase III [Burkholderia sp.
CCGE1002]
Length = 203
Score = 37.9 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF---- 59
+ V D E G + DR + A V + +++ V +D+ L A
Sbjct: 19 NLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETL----AKMDEWN 74
Query: 60 --ITGIT--PQKALRDGVVEAEFSRRIHQFFSV 88
G + + V EA+ + +I +F
Sbjct: 75 QNTHGRSGLIDRVKVSTVSEADATAQIREFLGQ 107
>gi|312963467|ref|ZP_07777949.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
gi|311282273|gb|EFQ60872.1| DNA polymerase 3, epsilon subunit [Pseudomonas fluorescens WH6]
Length = 235
Score = 37.9 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 63/193 (32%), Gaps = 37/193 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP------ADDYLPDPEAVFITG 62
D ET G ++ D+ V IE V F + D P +V I G
Sbjct: 45 DLETSGLNLNRDQVLSIGAV-------VIEDGAVDFSQLFERTLQRTDTKLSP-SVLIHG 96
Query: 63 ITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSW 122
+ P A+ G E +F + F + +++ R DS +
Sbjct: 97 LGPS-AIAAGSDPVEALLDFMEFVGDSP-------LLAFHAPFDQHMLGRALKDSLGYRL 148
Query: 123 DNGNSRWDLLDVMRAIYAFSPDG-IQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADV 181
+ LDV P+ I+ DD FKL + H A AD
Sbjct: 149 AHP-----FLDVADIAPLLCPEAHIREAGLDDWINHFKL---------QVGERHHASADA 194
Query: 182 YATLALVWLIREK 194
AT L+ ++ +
Sbjct: 195 LATAELMLILFSR 207
>gi|254281582|ref|ZP_04956550.1| oligoribonuclease [gamma proteobacterium NOR51-B]
gi|219677785|gb|EED34134.1| oligoribonuclease [gamma proteobacterium NOR51-B]
Length = 180
Score = 37.9 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
+ + D E G R + A + D ++
Sbjct: 5 QNLIWVDLEMTGLVPEEHRVIEIATIVTDSALNEL 39
>gi|313114851|ref|ZP_07800350.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622801|gb|EFQ06257.1| exonuclease [Faecalibacterium cf. prausnitzii KLE1255]
Length = 329
Score = 37.9 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 48/211 (22%)
Query: 1 MTNHFVIYDYE--------TFGRD----VALDRPAQFAGVRVDRQWEKIESTEV-----F 43
M + V++D E TF + V++D +++ +
Sbjct: 1 MPRNLVLFDLEWNIGYQPYTFNYHGVQQTFRGEIVEIGAVKIDEDANVLDTFSIHLRPRI 60
Query: 44 FCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDD 103
F K +TG+T Q L G + RR Q+ P+ + DD
Sbjct: 61 FRKLQHHI------AKVTGLT-QADLDKGEPIVQGLRRFMQW-CGPDAEFAEWG---MDD 109
Query: 104 -YYSRNIFYRNFYDSY-RWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQ 161
+ Y D W +DL V + P ++ + L+
Sbjct: 110 VPVLKQNLYLCNIDESKPTIW------YDLQQVFLREH---------PRKEGEGMT--LE 152
Query: 162 DLALANGIEHVN-AHDAKADVYATLALVWLI 191
+ G+ HDA +D T + ++
Sbjct: 153 SVVTRLGLPMERQFHDALSDTLYTADVCRML 183
>gi|146329568|ref|YP_001209798.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
VCS1703A]
gi|146233038|gb|ABQ14016.1| DNA polymerase III, epsilon subunit [Dichelobacter nodosus
VCS1703A]
Length = 233
Score = 37.9 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 20/91 (21%)
Query: 1 MTNHFVIYDYETFGRDVALD------RPAQFAGVRVDRQWEKIES---TEVFFCKPADDY 51
M+ VI+D ET G + D R + V E I+ F C +
Sbjct: 1 MSFRSVIFDTETTGMNFESDNKAEGHRIIEIGCV------ELIDRVPTEHYFHCYLNPEQ 54
Query: 52 LPDPEAVFITGITPQKALRDG-----VVEAE 77
DP+A + GI+ + + E E
Sbjct: 55 PVDPQAFKVHGISDEFLADKPFFKDVLPEFE 85
>gi|15242961|ref|NP_200623.1| leucine-rich repeat transmembrane protein kinase, putative
[Arabidopsis thaliana]
gi|75180662|sp|Q9LVN2|Y5815_ARATH RecName: Full=Probably inactive leucine-rich repeat receptor-like
protein kinase At5g58150; Flags: Precursor
gi|8777316|dbj|BAA96906.1| receptor-like protein kinase [Arabidopsis thaliana]
gi|20268688|gb|AAM14048.1| putative receptor protein kinase [Arabidopsis thaliana]
gi|21689849|gb|AAM67568.1| putative receptor protein kinase [Arabidopsis thaliana]
gi|224589727|gb|ACN59395.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis
thaliana]
gi|332009622|gb|AED97005.1| probably inactive leucine-rich repeat receptor-like protein kinase
[Arabidopsis thaliana]
Length = 785
Score = 37.9 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 22/144 (15%)
Query: 178 KADVYATLALVWLIREKKPKLF---EYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGAS- 233
D ++A L R P LF Y + + + +D+ N+ L+H +G A
Sbjct: 557 LTDTEVSIAFERLARINHPNLFPLCGYCIATEQRIAIYEDLDMVNLQSLLHNNGDDSAPW 616
Query: 234 --RSNTAL------------IAPVAWHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFT 279
R AL P H K + I + S + R D V+L F
Sbjct: 617 RLRHKIALGTARALAFLHHGCIPPMVHGEVKAATILLDSSQEPR-LADFGLVKLLDEQFP 675
Query: 280 SHDELKGLVPVPIKEVHLNKCPIL 303
+ L G P + N P L
Sbjct: 676 GSESLDGYTPPEQER---NASPTL 696
>gi|15900695|ref|NP_345299.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus pneumoniae TIGR4]
gi|111658147|ref|ZP_01408844.1| hypothetical protein SpneT_02000672 [Streptococcus pneumoniae
TIGR4]
gi|149021672|ref|ZP_01835703.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
gi|14972279|gb|AAK74939.1| DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG
[Streptococcus pneumoniae TIGR4]
gi|147930133|gb|EDK81119.1| ATP-dependent DNA helicase [Streptococcus pneumoniae SP23-BS72]
Length = 816
Score = 37.9 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD-PEAVFI- 60
N +V+ D E + + Q G+ V E ++ D P P I
Sbjct: 6 NRYVVVDLEATSTG-SKAKIIQV-GIVVIEDGEIVDHYTT-------DVNPHEPLDAHIK 56
Query: 61 --TGITPQKALRDGVVEAEFSRRIHQFFS-VPNTCIIGYNNIRFD-DYYSRNIFYRNFYD 116
TG+T Q+ + +FS+ + F V + + +N ++FD + + N+F+ +
Sbjct: 57 ELTGLTDQRLAQA----PDFSQVARKIFDLVEDGIFVAHN-VQFDANLLAENLFFEGY-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
N +D + F P+ ++ L L GI +AH
Sbjct: 110 ----ELRNPR-----VDTVELAQVFFPELEKYS----------LPILCRELGIPLKHAHT 150
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D AT L+ +R+K +L
Sbjct: 151 ALSDAQATAELLLFLRKKMTQL 172
>gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4]
Length = 572
Score = 37.9 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
FV++D ET G D + V+V + + P+ V +TG
Sbjct: 24 TTFVVFDLETTGTKPGPDGITEIGAVKVRAG-QVLGEFATL---VNPGTPIPPQIVELTG 79
Query: 63 IT 64
IT
Sbjct: 80 IT 81
>gi|238918361|ref|YP_002931875.1| oligoribonuclease [Edwardsiella ictaluri 93-146]
gi|238867929|gb|ACR67640.1| oligoribonuclease [Edwardsiella ictaluri 93-146]
Length = 167
Score = 37.9 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIES 39
G D DR + A + D +
Sbjct: 2 TGLDPQRDRIIEIATLVTDADLNVLAE 28
>gi|256818923|ref|YP_003140202.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
7271]
gi|256580506|gb|ACU91641.1| DNA polymerase III, epsilon subunit [Capnocytophaga ochracea DSM
7271]
Length = 442
Score = 37.9 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 55/215 (25%)
Query: 5 FVIYDYETFG--------RDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE 56
+ I D ET G D+A QF G + Q+ + + E +P +++
Sbjct: 2 YAILDIETTGGKYNEEGITDIA---IYQFNGHEITDQFISLINPE----RPIQEFV---- 50
Query: 57 AVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGI K LR+ E ++RI + + I+G+N FD + F R
Sbjct: 51 -TKLTGIN-NKMLRNAPKFYEVAKRIVEITTD--CIIVGHNA-AFDYRILQTEFRRLG-- 103
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
+D + S I S+ L L + GI + H
Sbjct: 104 ------------YDFVRTTLCTVELSERLIP------NKESYSLGKLVRSLGIPVSDRHR 145
Query: 177 AKADVYATLALVWLIREKKPKLFEYLYDYRNKNQL 211
A D ATL KLF+YL + K +
Sbjct: 146 ASGDALATL-----------KLFKYLLEKDTKKDI 169
>gi|213964476|ref|ZP_03392676.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
SK46]
gi|213952669|gb|EEB64051.1| DNA polymerase III epsilon subunit [Corynebacterium amycolatum
SK46]
Length = 195
Score = 37.9 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 38/185 (20%), Positives = 58/185 (31%), Gaps = 18/185 (9%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D + D+ V V+ + +E + +P + + E+ + G+T
Sbjct: 25 DVETTGLDPSKDQLLSIGWVAVEGRDIVLEESGHLIIRPEREEVSVGESATVHGLTDDMV 84
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
E + + + F D R F F
Sbjct: 85 ATGVEAEVAVGKLLEALRGRKLLAHYARMEVGFLDPLCRKYFDARFDVPVA--------- 135
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
D + D I +R+ +L L GI AH A D A ALV
Sbjct: 136 -DTMT-------REYDAILRANREPVRDELRLWSLCDKYGIPRFKAHHAFNDALA-CALV 186
Query: 189 WLIRE 193
WL +E
Sbjct: 187 WLAQE 191
>gi|15640327|ref|NP_229954.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|153822831|ref|ZP_01975498.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
gi|153827159|ref|ZP_01979826.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
MZO-2]
gi|153831076|ref|ZP_01983743.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
623-39]
gi|227080513|ref|YP_002809064.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
M66-2]
gi|229524741|ref|ZP_04414146.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
gi|9654711|gb|AAF93473.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126519649|gb|EAZ76872.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae B33]
gi|148873443|gb|EDL71578.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
623-39]
gi|149738956|gb|EDM53274.1| DNA polymerase III, epsilon subunit, putative [Vibrio cholerae
MZO-2]
gi|227008401|gb|ACP04613.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae
M66-2]
gi|227012158|gb|ACP08368.1| putative DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|229338322|gb|EEO03339.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
Length = 223
Score = 37.9 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 24/177 (13%)
Query: 9 DYETFGRDVALDRPAQFAGVR-VDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET D A + VD + + EV C P D +V I I Q
Sbjct: 48 DCETTSLDPKRAELVTIAATKIVDNRIITSQPFEVRLCAPQS---LDSGSVRIHRIRHQD 104
Query: 68 ALRDGVVEAE-FSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
DG+ E E + I + P ++GY+ IR+D ++ N
Sbjct: 105 LH-DGLSEKEALLQLIEFIGNRP---LVGYH-IRYDKTILDIACRKHLGFPLP------N 153
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
L++V + + + D L+ + + + HDA D A
Sbjct: 154 R---LIEVSQIYHDKLEKHLPNAYFD-----LSLEAICRHLDLPLQDKHDALQDAIA 202
>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
Length = 244
Score = 37.9 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 9 DYETFGRDVALD------RPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITG 62
D ET G + A R + V V + + + KP D L DPEA+ + G
Sbjct: 13 DTETTGMNTAGGPVYLGHRIIEIGCVEV-INRKLTGNHYHVYIKP--DRLVDPEAIQVHG 69
Query: 63 ITPQKALRDGVVEAEFSRRIHQFF 86
IT + +I F
Sbjct: 70 ITDEFLRDKPS-----FSQIADEF 88
>gi|311696841|gb|ADP99714.1| exonuclease, RNase T and DNA polymerase III [marine bacterium HP15]
Length = 242
Score = 37.9 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 46/192 (23%), Positives = 67/192 (34%), Gaps = 26/192 (13%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP-DPEAVFITGI 63
FV D+ET G D V ++ + +P LP ++ I GI
Sbjct: 52 FVALDFETTGLDANQHSIVSIGLVPFTLDGIQLGKARHWIVRPK---LPLHQTSITIHGI 108
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCI--IGYNNIRFDDYYSRNIFYRNFYDSYRWS 121
T + + + + F+ N I + Y NI R+F+D
Sbjct: 109 THSDIDQA----PDLNDILKDLFACLNGRIPVVHYRNIE-----------RSFFD-VALQ 152
Query: 122 WDNGNS-RWDLLDVMRAIYAFSPDGIQ--WPSRDDGAT-SFKLQDLALANGIEHVNAHDA 177
W G R+ L+D M PD W S +L D L G+ H AH+A
Sbjct: 153 WRLGEGIRFPLIDTMAIEAHLHPDRNPSRWQQLLGKKPVSIRLADSRLRYGLPHYAAHNA 212
Query: 178 KADVYATLALVW 189
D AT L+
Sbjct: 213 LIDAVATAELLQ 224
>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
TXDOH]
gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
Bt4]
Length = 241
Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARAGDRIIEVGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRD 71
Sbjct: 64 LRDK 67
>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
E264]
gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
E264]
gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
E264]
Length = 241
Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G + DR + V + + F+ P D DP A+ + G+T +
Sbjct: 7 DTETTGLNARAGDRIIEVGCVEL-LNRRLTGNNLHFYVNPERD--SDPGALAVHGLTTEF 63
Query: 68 ALRD 71
Sbjct: 64 LRDK 67
>gi|255724028|ref|XP_002546943.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis
MYA-3404]
gi|240134834|gb|EER34388.1| oligoribonuclease, mitochondrial precursor [Candida tropicalis
MYA-3404]
Length = 256
Score = 37.5 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 37/183 (20%)
Query: 5 FVIYDYETFGRDV-ALDRPAQFAGVRVDRQWEKIES---------TEVFFCKPADDYLPD 54
V D E G DV D + + D E ++ + + + +
Sbjct: 53 IVWVDCEMTGLDVFGNDNIIEICCLITDGNLEIVDEEGYESTIYYPKSRLDQMNEWCI-- 110
Query: 55 PEAVFITGIT---------PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYY 105
G + P + L +VE E I ++ ++ N+I D ++
Sbjct: 111 ----ETHGKSGLTAKVLANPDRKLD--IVENELLEYIKKYIPKERDALLAGNSIHMDRFF 164
Query: 106 SRNIFYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQD 162
F + + + D+ +M Y +PD ++W + G+ + + L+
Sbjct: 165 MMKEFPKVIEHLHYRN-------IDVSTIMEIGYRHNPDLMKWQPKKKGSHTARSDILES 217
Query: 163 LAL 165
+A
Sbjct: 218 IAQ 220
>gi|84997792|ref|XP_953617.1| hypothetical protein [Theileria annulata]
gi|65304614|emb|CAI72939.1| hypothetical protein, conserved [Theileria annulata]
Length = 491
Score = 37.5 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244
LA++ +I + PK +YL + + ++ + HVSG F S A+I
Sbjct: 111 LAVMDIIFYQNPKFSDYLMNN-----IANDLNNEIARLRNHVSGQF--KESKIAIIGY-- 161
Query: 245 WHPRYKDSVIGCNL-SGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPIL 303
SV+ +L S + ++++ + RL +L + P+ V +N+ P L
Sbjct: 162 ----SMGSVLVYDLLSVNPCRLSNIEASK-RPRLEHK-IDLFFAIGSPLSAVLVNQNPQL 215
Query: 304 MPIDYCKKEHFERWGI--DHKRCLENLTLL 331
M + E + + I + L
Sbjct: 216 MKLGLKLPEDIKYYNIFHPYDPIASRWEKL 245
>gi|256784395|ref|ZP_05522826.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
gi|289768274|ref|ZP_06527652.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
gi|289698473|gb|EFD65902.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
Length = 244
Score = 37.5 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D R A + V E + E +AV + GI+ ++
Sbjct: 11 FDLETTGTDPREARIVTGAVIEV-MGSEPLGRREWLA---DPGVEIPADAVAVHGISNER 66
Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
A R+G + + I + N FD R+ S
Sbjct: 67 AAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALPSL 119
>gi|158333590|ref|YP_001514762.1| lipopolysaccharide biosynthesis protein [Acaryochloris marina
MBIC11017]
gi|158303831|gb|ABW25448.1| lipopolysaccharide biosynthesis protein, putative [Acaryochloris
marina MBIC11017]
Length = 710
Score = 37.5 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 23/174 (13%)
Query: 290 VPIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPY 349
+ I H N I ++ K+ E + L LL +Q L+
Sbjct: 246 LGISTAHKN---ISTSLEEIDKDLAEAKSNFREDHPAVLELLERQAQLKQLLSQ--KIEK 300
Query: 350 TSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQ--LSTLNLPFSDRRLPELFFRYR--A 405
+ S D+QL F ++ + + ++++ + LS L +L + YR A
Sbjct: 301 FAQS---DAQL--NFDSNQEDDLRSQLIQLDIRRNGLSKQQL-----KLRQQLSSYRQQA 350
Query: 406 RNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINA 459
RN P E++ R + S ++Q L ++ +
Sbjct: 351 RNLPQL----EQRQNELERTAKASASTYRNLLEQIQELKVTENQSPLTVSILES 400
>gi|182417131|ref|ZP_02948504.1| exonuclease [Clostridium butyricum 5521]
gi|237669064|ref|ZP_04529048.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182378973|gb|EDT76479.1| exonuclease [Clostridium butyricum 5521]
gi|237657412|gb|EEP54968.1| exonuclease, RNase T and DNA polymerase III [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 205
Score = 37.5 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITGI 63
+ +D ET Q + + VD + + + + FF D + DP A I G
Sbjct: 3 LLFFDTETTSIKPG--SICQLSYITVDASTKPQVTTGKNFF--FTVDEM-DPSAQEIHGF 57
Query: 64 TPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFY--------R 112
+ +K + E ++ + F IIG+N + FD + ++ + +
Sbjct: 58 SLEKLYE--LSEGQYFEDLAFDFINDFREADFIIGHN-VNFDIRFLKHELFTLGELFEPK 114
Query: 113 NFYDSYRWSWDNGNSRWDLLDVMRAIYAFSP----DGIQWPSRDDGATSFKLQDLALANG 168
N + + + D+ + +A + I W + + + + L +G
Sbjct: 115 NIFCTMAY-------YKDICRIPKANGEIKNPKLSEVIDWLNVSEKQIAETSEKLFEGSG 167
Query: 169 IEHVNAHDAKADVYAT 184
N HDA+ D AT
Sbjct: 168 ----NYHDARFDTAAT 179
>gi|319944252|ref|ZP_08018528.1| exonuclease [Lautropia mirabilis ATCC 51599]
gi|319742547|gb|EFV94958.1| exonuclease [Lautropia mirabilis ATCC 51599]
Length = 230
Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 61/189 (32%), Gaps = 27/189 (14%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKP----ADDYLPDPEAVFITGIT 64
D ET G +V D R + + + + P++V + +
Sbjct: 51 DCETTGLNVRQDEIIAIGATR------IVGRRLMTRERLELLVRPEREVSPDSVAVHRLR 104
Query: 65 PQKALRDGVVEAEFSRRIHQFF-SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
Q DG+ E R+ F S P ++GY + FD R F
Sbjct: 105 AQDV-ADGLPLCEAMERLLMFIGSRP---LVGY-YLEFDVAMIDRALKRCF--GLTLPQR 157
Query: 124 NGNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAKAD-V 181
++V Y + + + D+ + + + +AHDA D V
Sbjct: 158 K-------IEVSAMYYDWRFRQLPPYQQHDNADIDLRFATILQTLDLPMRDAHDALNDAV 210
Query: 182 YATLALVWL 190
A LA + L
Sbjct: 211 MAALAFIRL 219
>gi|118577408|ref|YP_899648.1| exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
DSM 2379]
gi|118504913|gb|ABL01395.1| Exonuclease, RNase T and DNA polymerase III [Pelobacter propionicus
DSM 2379]
Length = 304
Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 24/132 (18%)
Query: 6 VIYDYETFGRDVALDRPAQFA--GVRVDRQWEKIESTEVFF------CKPADDYLPDPEA 57
+ D ET G + + D + D +I + C+P D PE
Sbjct: 48 LCIDTETTGFNFSDDVIIELGIVAFEYDAMTGEISRIVDTYSGFEDPCRPLD-----PEV 102
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGIT + + + S + C +N +FD + F
Sbjct: 103 TAVTGITDDMLAGQSLD----DAAVGKIVSQASLCFC--HNCKFDRSFLERRFPEFEKLP 156
Query: 118 YRWS-----WDN 124
+ + W N
Sbjct: 157 FACTMSQIDWKN 168
>gi|93007423|ref|YP_579187.1| DNA polymerase III [Streptomyces phage mu1/6]
gi|90568501|gb|ABD94180.1| DNA polymerase III [Streptomyces phage mu1/6]
Length = 238
Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGITPQ 66
+D ET G DV DR A + V AD + PEA + G+T +
Sbjct: 11 FDTETTGVDVESDRIVTAAVLLVGG-----GQPTETHTWLADPGIDIPEAASAVHGVTSE 65
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYN----NIRFDDYYSRNIFYRNFYDSYR 119
+A +G + + + G N RFD R+ S
Sbjct: 66 RARAEGRPAPMVVSEVAALLADQ--IVTGVPVVAMNARFDVTILDRELARHGLPSLA 120
>gi|212526340|ref|XP_002143327.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
gi|210072725|gb|EEA26812.1| RNA exonuclease Rex2, putative [Penicillium marneffei ATCC 18224]
Length = 189
Score = 37.5 bits (86), Expect = 4.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIE 38
V D E G D D+ Q D Q + +E
Sbjct: 10 LVWVDCEMTGLDPETDQILQICCFITDAQLQLLE 43
>gi|332534582|ref|ZP_08410417.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036002|gb|EGI72481.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
Length = 236
Score = 37.5 bits (86), Expect = 4.9, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAV 58
FV D+ET G + D V + E +CK + ++ P E++
Sbjct: 47 FVAMDFETTGLNSQNDDIVSVGLV----PFNL----ERIYCKHSRHWVVQPRRNLHEESI 98
Query: 59 FITGITPQK 67
I GIT +
Sbjct: 99 LIHGITHSE 107
>gi|261338128|ref|ZP_05966012.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093]
gi|270276756|gb|EFA22610.1| oligoribonuclease [Bifidobacterium gallicum DSM 20093]
Length = 219
Score = 37.5 bits (86), Expect = 4.9, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
+ + D E G D+ D + + V D + ++ F KP+ D +
Sbjct: 15 SRLIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDEGIDFVIKPSKDAVDH 66
>gi|330991910|ref|ZP_08315859.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
gi|329760931|gb|EGG77426.1| DNA polymerase III polC-type [Gluconacetobacter sp. SXCC-1]
Length = 309
Score = 37.5 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 56/196 (28%), Gaps = 50/196 (25%)
Query: 7 IYDYETFGRDVALDRPAQFAGV-----------RVDRQWEKIESTEVFFCKPADDYLPDP 55
D ET G A D +F V + ++ C P
Sbjct: 57 FLDLETTGLSAAKDEIIEFGIVPFVYTLEGKILGTLEPFSRLREPS---CPIP------P 107
Query: 56 EAVFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFY 115
+ +TGITP V E + F P + II +N FD + +
Sbjct: 108 QITALTGITPDMVAGQRVTADEVAG-----FVAPASLIIAHNA-NFDRK------FAEAF 155
Query: 116 DSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+ S D+ W +G KL L + G H
Sbjct: 156 SPVFTTKPWACSMRDV---------------DW--AAEGYEGRKLSYLGMQAGFWFDG-H 197
Query: 176 DAKADVYATLALVWLI 191
A D A +A++ +
Sbjct: 198 RAVDDCQAGIAILDRV 213
>gi|330812208|ref|YP_004356670.1| DNA polymerase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380316|gb|AEA71666.1| putative DNA polymerase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 235
Score = 37.5 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 60/196 (30%), Gaps = 43/196 (21%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--------PDPEAVFI 60
D ET G ++ D+ V IE + F + + L P V I
Sbjct: 45 DLETTGLNLNKDQVLSIGAV-------VIEDGAIDFSQQFERTLQCDKQKLGPS---VLI 94
Query: 61 TGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY-R 119
G+ P A+ G AE +F + F + ++ R D
Sbjct: 95 HGLAPS-AIAAGSDPAEALLAFMEFVGDSP-------LLAFHAPFDSHMLGRALKDYLGY 146
Query: 120 WSWDNGNSRWDLLDVMRAIYAFSPDGI-QWPSRDDGATSFKLQDLALANGIEHVNAHDAK 178
+ DL ++ G+ +W FKLQ H+A
Sbjct: 147 RLQHSFLDVADLAPMLCPQANLRKSGLDEWIDW------FKLQVFDR---------HNAS 191
Query: 179 ADVYATLALVWLIREK 194
AD AT L ++ +
Sbjct: 192 ADALATAELALILFSR 207
>gi|295839646|ref|ZP_06826579.1| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
gi|295827583|gb|EDY45420.2| DNA polymerase III epsilon subunit [Streptomyces sp. SPB74]
Length = 331
Score = 37.5 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 33/176 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A RVD + ++E P D P V+I G+T +
Sbjct: 23 DVETTGL-ARDDRIVSAAVYRVDAR-GEVEDHWYTLVNPERD----PGPVWIHGLTSEVL 76
Query: 69 LRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ I S ++ +N + F + +
Sbjct: 77 EGAPLFP-----EIAGELSRRLDGRVLVAHNAV----------FDWSM---LAREYARAG 118
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + I + P+ KL+ LA G+E AH A D
Sbjct: 119 ITAPVRRRLCTIALAKELALPLPNH-------KLETLAAHFGVEQRRAHHALDDAR 167
>gi|226310490|ref|YP_002770384.1| hypothetical protein BBR47_09030 [Brevibacillus brevis NBRC 100599]
gi|226093438|dbj|BAH41880.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 235
Score = 37.5 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 27/189 (14%)
Query: 9 DYETFGRDVAL-DRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
D ET G D V + + + + P P ++ TGIT
Sbjct: 57 DLETTGFYPDHGDAIISMGAVAMRGEHLLLGDSFYTLVNPGRAIPPHIRSL--TGIT-DD 113
Query: 68 ALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNS 127
+ D E R Q+ ++ R + + R+ ++ +
Sbjct: 114 MVADAPPLLEALSRFFQYVGDRPLVA---HHSRHEREFLRSGLWKTSRRPFTHR------ 164
Query: 128 RWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLAL 187
+LD M I + G S L L A+ I H A D A L
Sbjct: 165 ---MLDTMLLIRLLN--------NPIGNGS--LDALCAAHDIPISRRHHAYCDALAAGTL 211
Query: 188 -VWLIREKK 195
+ + +
Sbjct: 212 WAKYLVKAQ 220
>gi|170700979|ref|ZP_02891961.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
ambifaria IOP40-10]
gi|170134119|gb|EDT02465.1| Exonuclease RNase T and DNA polymerase III [Burkholderia
ambifaria IOP40-10]
Length = 206
Score = 37.5 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEK 36
+ V D E G D DR + A V + +
Sbjct: 19 NLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDV 51
>gi|195576205|ref|XP_002077967.1| GD23197 [Drosophila simulans]
gi|194189976|gb|EDX03552.1| GD23197 [Drosophila simulans]
Length = 353
Score = 37.5 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 26 AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
A RV + + + + DPEA ITG++ R+ ++ + ++ I F
Sbjct: 70 AAPRVLHKLNVLFQPSM---------VVDPEAERITGLSNYLLERESQLDTDAAQLIVSF 120
Query: 86 FS--VPNTCIIGYNNIRFDDYYSRNIF 110
C++ +N FD R F
Sbjct: 121 LKHLPSPVCLVAHNGWGFDFPILRQAF 147
>gi|331698794|ref|YP_004335033.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
gi|326953483|gb|AEA27180.1| Oligoribonuclease [Pseudonocardia dioxanivorans CB1190]
Length = 204
Score = 37.5 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D + A + D +
Sbjct: 1 MNDRLVWIDCEMTGLDLQRDALIEIAVLVTDGDLNVLGE 39
>gi|322489448|emb|CBZ24706.1| mitochondrial DNA polymerase I protein B,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1429
Score = 37.5 bits (86), Expect = 5.5, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V +D ET G + + D + A ++ IE+ F P V I IT
Sbjct: 764 IVFFDIETTGLNPSTDAIVEVAM------FDPIEN-TTFHTLVNPQRSITPRTVGIHHIT 816
Query: 65 PQKALRDGVVEAEFSRRIHQFF----SVPNT----CIIGYNNIRFDDYYSRNIF 110
V+ ++ I Q+ + N ++G+N D+ R
Sbjct: 817 NAMVRDAPTVDV-VAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPMLRRAL 869
>gi|56478059|ref|YP_159648.1| excinuclease Cho [Aromatoleum aromaticum EbN1]
gi|56314102|emb|CAI08747.1| Excinuclease Cho, similar to DNA polymerase III epsilon subunit
family [Aromatoleum aromaticum EbN1]
Length = 478
Score = 37.5 bits (86), Expect = 5.5, Method: Composition-based stats.
Identities = 37/227 (16%), Positives = 65/227 (28%), Gaps = 63/227 (27%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVF----FCKPA---DDYLPDPEA 57
D ET G + D + A + +I V +P DY+
Sbjct: 18 LAFVDIETTGTTASHDSITEIAII-------EIGEDGVREWSSLVRPDSRIPDYIE---- 66
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGI+ + D AE + + + +N RFD + R F R
Sbjct: 67 -RMTGIS-NHMVADAPTFAELAETVFDRLHE--RVFVAHNA-RFDHGFIRAAFRRLGV-- 119
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
D + S R + L L +G+E H A
Sbjct: 120 ------------DFRPKVLCTVRLSRRLYPQERRHN------LDALIARHGLEVEAQHRA 161
Query: 178 KADVYATLALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLV 224
D A L+++ ++ + ++ P++
Sbjct: 162 LGDAQA--------------LWQFW------QRVHRQFGAAHLEPML 188
>gi|149910647|ref|ZP_01899284.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
gi|149806274|gb|EDM66250.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
Length = 239
Score = 37.5 bits (86), Expect = 5.6, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 53/206 (25%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58
FV D+ET G D + V + + FC+ A + +PE ++
Sbjct: 48 FVALDFETTGLDSEQNSIISIGLV----PFNL----QRIFCRQAQHWYIEPEDKLKENSI 99
Query: 59 FITGITPQKALRDGVVEAEFSRRIHQFFSVPNT--CIIGYNNIRFDDYYSRNIFYRNFYD 116
I GIT G + R + ++ Y I D F+D
Sbjct: 100 IIHGITHTDL--KGAP--DLLRILEPVLDALAGKVVVVHYRRIERD-----------FFD 144
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSF--------KLQDLALAN- 167
++ S+ N + ++D M+ I+ ++ SF + + + LAN
Sbjct: 145 NHLRSFINEGIVFPVIDTMQ---------IEADVQESQNNSFFSLFKPKKRQESIRLANS 195
Query: 168 ----GIEHVNAHDAKADVYATLALVW 189
+ HDA D AT L+
Sbjct: 196 RARYNLPAYPPHDALTDAIATAELLQ 221
>gi|145296472|ref|YP_001139293.1| oligoribonuclease [Corynebacterium glutamicum R]
gi|166216072|sp|A4QGM5|ORN_CORGB RecName: Full=Oligoribonuclease
gi|140846392|dbj|BAF55391.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 219
Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D+ + A + D +
Sbjct: 19 LVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGE 53
>gi|46198514|ref|YP_004181.1| hypothetical protein TTC0206 [Thermus thermophilus HB27]
gi|55980543|ref|YP_143840.1| DNA polymerase III subunit epsilon [Thermus thermophilus HB8]
gi|46196136|gb|AAS80554.1| hypothetical conserved protein [Thermus thermophilus HB27]
gi|55771956|dbj|BAD70397.1| probable DNA polymerase III epsilon subunit [Thermus thermophilus
HB8]
Length = 247
Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 35/182 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G LD + +R++ F P P +TGI P++A
Sbjct: 77 DLETTGLAPGLDEVIEVGLLRLEG-----GRRLPFQSLVRPSRPPSPFVERLTGI-PREA 130
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
L + E + + + T +I +N FD + R + N
Sbjct: 131 LEEAPSLEEVLEKAYPLLAD-ATLVI--HNAAFDLGFLRPALE-------GLGYRLENPV 180
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFK---LQDLALANGIEHVNAHDAKADVYATL 185
D L + A G + L L+ + H A DV TL
Sbjct: 181 VDSLRL-----ARR-----------GLPGLRRYGLDALSEVLELPRRTCHRALEDVERTL 224
Query: 186 AL 187
A+
Sbjct: 225 AV 226
>gi|282864742|ref|ZP_06273796.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
gi|282560167|gb|EFB65715.1| Exonuclease RNase T and DNA polymerase III [Streptomyces sp. ACTE]
Length = 243
Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 18/120 (15%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDP------EAVFIT 61
+D ET G D R A V V+ E C+ +L DP +A I
Sbjct: 11 FDLETTGTDPLEARIVTAAVVAVESS-----GGEAAGCRT---WLADPGVRIPEQASAIH 62
Query: 62 GITPQKALRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
GI+ ++A +G E + I ++ YN FD R+ S
Sbjct: 63 GISSERAAAEGRPVREVADEIAGILVEHWRAGVPVVAYNA-AFDLTLLSAELRRHGLPSL 121
>gi|19553671|ref|NP_601673.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
gi|62391312|ref|YP_226714.1| oligoribonuclease [Corynebacterium glutamicum ATCC 13032]
gi|23821913|sp|Q8NMU1|ORN_CORGL RecName: Full=Oligoribonuclease
gi|21325244|dbj|BAB99866.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
glutamicum ATCC 13032]
gi|41326653|emb|CAF21135.1| Oligoribonuclease (3'->5' exoribonuclease) [Corynebacterium
glutamicum ATCC 13032]
Length = 219
Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D+ + A + D +
Sbjct: 19 LVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGE 53
>gi|309797899|ref|ZP_07692280.1| exonuclease [Escherichia coli MS 145-7]
gi|308118507|gb|EFO55769.1| exonuclease [Escherichia coli MS 145-7]
Length = 182
Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 51/208 (24%)
Query: 9 DYETFGRDVALD-RPAQFAGVRVDRQWEK-IESTEVFFCKPADDYLPDPEAVFITGITPQ 66
D E+ G D + + A V+ + + + ++S + F DP+A + GI+ +
Sbjct: 7 DIESTGLDFLSGHKIIEIAMVKYEIETQTMVDSFVMRF---NPRRSIDPKAQAVHGISLE 63
Query: 67 KALRDGVV--EAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIF--YRNFYDSYRWSW 122
+ ++ A + I +N FD + R+ Y
Sbjct: 64 DLAAEPLLADHASSVASYLSSSDIW----IAHNGEAFDIPFIRHELKSYGFSLPDIP--- 116
Query: 123 DNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI--EHVNAHDAKAD 180
L+D + +++A +DG +L++LA + G +H AH A D
Sbjct: 117 --------LIDTLFSLWA----------TEDGKRP-RLEELAFSLGFIYDHAKAHSALYD 157
Query: 181 VYATLALVWLIREKKPKLFEYLYDYRNK 208
+ + RNK
Sbjct: 158 TNLMMQC--------------FFKARNK 171
>gi|27904991|ref|NP_778117.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|46396112|sp|Q89A34|ORN_BUCBP RecName: Full=Oligoribonuclease
gi|27904389|gb|AAO27222.1| oligoribonuclease [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 160
Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 3 NHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKI 37
+ + D E G + + + + A + D+ + +
Sbjct: 6 KNLIWIDLEMTGLNPNIHKIIEIATLITDKNLKIL 40
>gi|329940730|ref|ZP_08290010.1| exonuclease [Streptomyces griseoaurantiacus M045]
gi|329300024|gb|EGG43922.1| exonuclease [Streptomyces griseoaurantiacus M045]
Length = 336
Score = 37.1 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 35/177 (19%), Positives = 55/177 (31%), Gaps = 35/177 (19%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T +
Sbjct: 26 DVETTGL-ARDDRIISAAVYRLDAR-GEVEDHWYTTVNPERD----PGPVWIHGLTSEAL 79
Query: 69 LRDGVVE---AEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNG 125
+ EF+ R+ ++ +N + FD + R +
Sbjct: 80 EGAPLFHEVAGEFAARLT------GRVLVAHNAV-FDWSMIAREYARAGQEPPVRQ---- 128
Query: 126 NSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
R + P + KL+ LA G+ AH A D
Sbjct: 129 ----------RLCTIALSKALALPL-----PNHKLETLAAHFGVVQRRAHHALDDAR 170
>gi|118473234|ref|YP_888984.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
gi|118174521|gb|ABK75417.1| oligoribonuclease [Mycobacterium smegmatis str. MC2 155]
Length = 216
Score = 37.1 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + V D E G D+ DR + A + D +
Sbjct: 8 VRDELVWIDCEMTGLDLKSDRLIEIAVLVTDADLNILGD 46
>gi|108800606|ref|YP_640803.1| oligoribonuclease [Mycobacterium sp. MCS]
gi|119869745|ref|YP_939697.1| oligoribonuclease [Mycobacterium sp. KMS]
gi|126436222|ref|YP_001071913.1| oligoribonuclease [Mycobacterium sp. JLS]
gi|122976715|sp|Q1B5T7|ORN_MYCSS RecName: Full=Oligoribonuclease
gi|166216269|sp|A3Q2P5|ORN_MYCSJ RecName: Full=Oligoribonuclease
gi|166216270|sp|A1UJ99|ORN_MYCSK RecName: Full=Oligoribonuclease
gi|108771025|gb|ABG09747.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp.
MCS]
gi|119695834|gb|ABL92907.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp.
KMS]
gi|126236022|gb|ABN99422.1| Exonuclease, RNase T and DNA polymerase III [Mycobacterium sp.
JLS]
Length = 215
Score = 37.1 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
M + V D E G D+ D + A + D +
Sbjct: 1 MRDELVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGD 39
>gi|254443961|ref|ZP_05057437.1| exonuclease, DNA polymerase III, epsilon subunit family
[Verrucomicrobiae bacterium DG1235]
gi|198258269|gb|EDY82577.1| exonuclease, DNA polymerase III, epsilon subunit family
[Verrucomicrobiae bacterium DG1235]
Length = 220
Score = 37.1 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 44/194 (22%), Positives = 68/194 (35%), Gaps = 27/194 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-ITGITPQ 66
+D ET G + Q AGVR+ I + E FC + P PE + +T +
Sbjct: 10 FDLETTGLRYKQEEITQIAGVRLGG---VIMNVEDSFCTYVNPGKPIPENIQKLTRVR-D 65
Query: 67 KALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
+ ++D E + FS +G + F R F NF Y
Sbjct: 66 EDVKDAPKPLEALQ----AFSDW----VG-DATLFGHDIYRFDF--NFIRKYARQEGVET 114
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLAL--ANGIEHVNAHDAKADVYAT 184
+D M WP S L D+A + G+ + HDA++D
Sbjct: 115 RTVRFIDTMDIFEVM------WPDFSRLRNS--LDDIAERLSAGLSSMRRHDAQSDAILL 166
Query: 185 LALVWLIREKKPKL 198
+ I++ P L
Sbjct: 167 AHIYQRIQD-HPDL 179
>gi|297155821|gb|ADI05533.1| DNA polymerase III subunit epsilon [Streptomyces bingchenggensis
BCW-1]
Length = 241
Score = 37.1 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 8 YDYETFGRDVALDRPAQFAGV--RVDRQWEKIESTEVFFCKPADDYLPDPEAV-FITGIT 64
+D ET G DV DR A V R ++ V + +P PEA I G+T
Sbjct: 12 FDTETTGIDVEQDRIVSAALVVQRGAGSLPEVRRWLV-----SPG-IPVPEAASAIHGLT 65
Query: 65 PQKALRDGVVEA----EFSRRIHQFFSVPNTCII 94
R G A E +R + + + ++
Sbjct: 66 DSHLQRHGRWPAPVVDEVARALAEQAARGTPVVV 99
>gi|283782956|ref|YP_003373710.1| exonuclease [Gardnerella vaginalis 409-05]
gi|283441223|gb|ADB13689.1| exonuclease [Gardnerella vaginalis 409-05]
Length = 259
Score = 37.1 bits (85), Expect = 6.1, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 61/195 (31%), Gaps = 33/195 (16%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G ++ D V + + + +P+A + G T +
Sbjct: 32 FDTETTGANIGKDAIVSATLVLRNPELAHTGDVVSTW-LINPHQPMNPKASEVNGFTDEY 90
Query: 68 ALRDG---VVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
G E EF R N ++ YN FD R+
Sbjct: 91 LKEHGGEPEEELEFLARAVSMAQAKNIPLLAYNA-PFDIAMLRHDL-------------- 135
Query: 125 GNSRWDL----LDVMRAIYAFSPDGIQW--PSRDDGATSFK-----LQDLALANGIE-HV 172
W L I+A + + I P D A S + L + G+E
Sbjct: 136 --KHWHLTALEERATCPIHALNANDILTVDPLVIDRAVSRRSGKRTLTITSQFYGVEPIG 193
Query: 173 NAHDAKADVYATLAL 187
+ HDA AD A L L
Sbjct: 194 DFHDATADTVAALDL 208
>gi|153006661|ref|YP_001380986.1| exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
Fw109-5]
gi|152030234|gb|ABS28002.1| Exonuclease RNase T and DNA polymerase III [Anaeromyxobacter sp.
Fw109-5]
Length = 200
Score = 37.1 bits (85), Expect = 6.1, Method: Composition-based stats.
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 20/183 (10%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G D D + + ++ +P + DP++V +
Sbjct: 17 DLETGGLDARRDPIIAIGMLPIRHGTLRLGEAYYSLVRPPPGRIIDPDSVRAH-----QL 71
Query: 69 LRDGVVEAEFSRRIHQFFS---VPNTCIIGYNNIRFDDYYSRNIFYRN-FYDSYRWSWDN 124
+ + EA + + ++ ++ D + ++ + R
Sbjct: 72 VAGELREAPAIGEVLREVDRRLREGVLLV--HHRALDVAFLKDAYRRCGMRWPAPRV--- 126
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
DLL I A + P L G+ AHDA +D A
Sbjct: 127 -VDTVDLL-----IRAKRRSPFKDPHLPPVLPVLNLTRARREYGLPDYQAHDALSDAIAA 180
Query: 185 LAL 187
L
Sbjct: 181 AEL 183
>gi|78186872|ref|YP_374915.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
gi|78166774|gb|ABB23872.1| DNA polymerase III, epsilon subunit [Chlorobium luteolum DSM 273]
Length = 236
Score = 37.1 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 19/190 (10%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVD-RQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64
V++D ET G D+ D V ++ +S EV D + EAV + G+
Sbjct: 50 VVFDTETTGFDLKTDGVISIGAVAINGLSINVADSFEVL---VRQDRVGRSEAVAVHGLL 106
Query: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124
+K + G E E + ++ + I+ + FD I F
Sbjct: 107 -KKDIAGGAGEVEAAEAFLEYI---GSSILVAQHASFDVAMLNRILSETFRIRLF----- 157
Query: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184
N D A A + + + A ++L L GI + H A D + T
Sbjct: 158 -NGVVD-----TASLAKRLEKGPYYNLAHKAGEYRLDHLCQRYGIRLYDRHTAAGDAFLT 211
Query: 185 LALVWLIREK 194
L+ + K
Sbjct: 212 AQLLQRLLSK 221
>gi|19920610|ref|NP_608732.1| CG3165 [Drosophila melanogaster]
gi|7295872|gb|AAF51172.1| CG3165 [Drosophila melanogaster]
gi|17944281|gb|AAL48034.1| LD40940p [Drosophila melanogaster]
gi|220955964|gb|ACL90525.1| CG3165-PA [synthetic construct]
Length = 351
Score = 37.1 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 26 AGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKALRDGVVEAEFSRRIHQF 85
A RV + + + + DPEA ITG++ R+ ++ + ++ I F
Sbjct: 70 AAPRVLHKLNVLFQPSM---------VVDPEAERITGLSNYLLERESQLDTDAAQLIVSF 120
Query: 86 FS--VPNTCIIGYNNIRFDDYYSRNIF 110
C++ +N FD R F
Sbjct: 121 LKHLPSPVCLVAHNGWGFDFPILRQAF 147
>gi|293401301|ref|ZP_06645445.1| collagen adhesion protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305427|gb|EFE46672.1| collagen adhesion protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 1971
Score = 37.1 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 298 NKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSSSQDVD 357
NK L Y +E G + L + L + Y + +D++
Sbjct: 1672 NKSMKLPLGKYTAQEISAPIGYNLDSTLYQIEL---SAEADAKVITHYELKLYNQKKDIE 1728
Query: 358 SQLYDGFFADVDRQIMDRIL 377
QLY FF D + +L
Sbjct: 1729 LQLYKAFFQKEDATLYKDVL 1748
>gi|219872207|ref|YP_002476582.1| oligoribonuclease [Haemophilus parasuis SH0165]
gi|219692411|gb|ACL33634.1| oligoribonuclease [Haemophilus parasuis SH0165]
Length = 168
Score = 37.1 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 13 FGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL 52
G D +R + A + D+ + V D+ L
Sbjct: 2 TGLDPEKERIIEIATIITDKDLNILAEGPVLAVYQPDELL 41
>gi|331015013|gb|EGH95069.1| exonuclease, putative [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 222
Score = 37.1 bits (85), Expect = 6.5, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 23/185 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G ++ D+ V ++ + D L P AV I G+ P A
Sbjct: 32 DLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKL-SP-AVLIHGLAPS-A 88
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G E +F I+G++ FD + + + ++ +
Sbjct: 89 IAAGSEPVEALLDFMEFVGDSP--ILGFHA-PFDQHMLARALKESLDYRLQHAFFD---A 142
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
++ ++ G L D G+ H+A AD T L
Sbjct: 143 AEIAPMLCEQANLRHAG--------------LDDWTQFFGLHAEERHNASADALVTAELA 188
Query: 189 WLIRE 193
++
Sbjct: 189 LILFS 193
>gi|282861901|ref|ZP_06270964.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
gi|282562926|gb|EFB68465.1| DNA polymerase III, epsilon subunit [Streptomyces sp. ACTE]
Length = 333
Score = 37.1 bits (85), Expect = 6.5, Method: Composition-based stats.
Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 29/174 (16%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D +E P D P V+I G+T +A
Sbjct: 23 DVETTGL-ARDDRIVSAAVYRLDA-LGDVEDHWYTLVNPERD----PGPVWIHGLT-SEA 75
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
L + E + ++ + ++ +N F + +
Sbjct: 76 LEGAPLFPEVAAQLSERLD--GRVLVAHNA----------AFDWSM---LAREYARAAIT 120
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + I A S + ++ P + KL+ LA G+ AH A D
Sbjct: 121 APVRQRLCTI-ALSKE-LRLPL-----PNHKLESLAAHFGVVQQRAHHALDDAR 167
>gi|311743097|ref|ZP_07716905.1| oligoribonuclease [Aeromicrobium marinum DSM 15272]
gi|311313777|gb|EFQ83686.1| oligoribonuclease [Aeromicrobium marinum DSM 15272]
Length = 203
Score = 37.1 bits (85), Expect = 6.6, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLP------- 53
M + V D E G + D + A + D + E + KP + L
Sbjct: 1 MNDKLVWIDCEMTGLSLTHDALIEIAVLVTDFELEVLGPGIDLVVKPPQEALDQMNEVVT 60
Query: 54 --DPEAVFIT----GITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYS 106
+ IT G+T Q A + + ++ P + N++ D +
Sbjct: 61 RMHTASGLITELDAGLTLQDAQAQVLDH------VREYVKEPGKAPLAGNSVGTDRAFL 113
>gi|261855262|ref|YP_003262545.1| ribonuclease T [Halothiobacillus neapolitanus c2]
gi|261835731|gb|ACX95498.1| ribonuclease T [Halothiobacillus neapolitanus c2]
Length = 241
Score = 37.1 bits (85), Expect = 6.6, Method: Composition-based stats.
Identities = 38/204 (18%), Positives = 65/204 (31%), Gaps = 49/204 (24%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWE----KIESTEVFFCKPADDYLPDPEAVFITGIT 64
D ET G + D + A V +D ++ + +P + +P ++ I GI
Sbjct: 44 DVETGGLNPQTDALLELAAVLLDVDANGKIIPVDRIQ-IHVQPFEGANLNPVSMKINGID 102
Query: 65 PQKALRDGVVEAE----FSRRIHQFFSVPN---TCIIGYNNIRFDDYYSRNIFYR--NFY 115
R + EAE F + I Q + ++G+N FD R N
Sbjct: 103 IDHPFRCALDEAEALKQFFQPIRQRVKLNGARRAVLVGHNA-AFDLAVINAACERTCNKK 161
Query: 116 DSYRWSWDNGNSRWDLLDV-------MRAIYAFSPDGIQWPSRDDGATSFKLQDLALANG 168
+ + + S +D + + A G++W
Sbjct: 162 NPF-----HPFSTFDTVTLSALAVGETVLAKALEAIGLEW-------------------- 196
Query: 169 IEHVNAHDAKADVYATLAL-VWLI 191
+ AH A D T L +I
Sbjct: 197 -DSQQAHGALYDAEQTAELFCRII 219
>gi|213965916|ref|ZP_03394107.1| oligoribonuclease [Corynebacterium amycolatum SK46]
gi|213951494|gb|EEB62885.1| oligoribonuclease [Corynebacterium amycolatum SK46]
Length = 217
Score = 37.1 bits (85), Expect = 6.6, Method: Composition-based stats.
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G + + A + D +
Sbjct: 17 IVWIDCEMTGLEPERHVIVEIAALVTDANLNVLGE 51
>gi|21220034|ref|NP_625813.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor
A3(2)]
gi|256788866|ref|ZP_05527297.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
gi|289772754|ref|ZP_06532132.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
gi|6822230|emb|CAB70936.1| putative DNA polymerase III [Streptomyces coelicolor A3(2)]
gi|289702953|gb|EFD70382.1| DNA polymerase III subunit epsilon [Streptomyces lividans TK24]
Length = 241
Score = 37.1 bits (85), Expect = 6.7, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE-AVFITGITPQ 66
+D ET G D DR A V D V +P PE A + G+T +
Sbjct: 12 FDTETTGVDTETDRIVSAALVVQDA---PGLRPRVTRWLVNPG-VPVPESATAVHGLTEE 67
Query: 67 KALRDGVVEAEFSRRIHQFFS 87
R G A + + +
Sbjct: 68 YVQRHGRWPAPVMYEMAEALT 88
>gi|297625994|ref|YP_003687757.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921759|emb|CBL56317.1| Oligoribonuclease [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 223
Score = 37.1 bits (85), Expect = 6.8, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPD 54
V D E G D+A D + A + D + +P+ L
Sbjct: 2 LVWIDCEMTGLDLANDELIEVACLVTDGELNVQGDGIDVLVQPSKHALDH 51
>gi|83854667|ref|ZP_00948197.1| hypothetical protein NAS141_08066 [Sulfitobacter sp. NAS-14.1]
gi|83842510|gb|EAP81677.1| hypothetical protein NAS141_08066 [Sulfitobacter sp. NAS-14.1]
Length = 110
Score = 37.1 bits (85), Expect = 7.0, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
++ YD D + Q V ++ + K+ C +P A+ T +
Sbjct: 2 NYAFYDTGRNSTDNTFNHILQLPTVFIEAKLNKL-EHTGIHCHFPPHAIPPHGAILATRV 60
Query: 64 T 64
T
Sbjct: 61 T 61
>gi|108758019|ref|YP_634170.1| 2-oxoglutarate dehydrogenase E1 component [Myxococcus xanthus DK
1622]
gi|108461899|gb|ABF87084.1| 2-oxoglutarate dehydrogenase, E1 component [Myxococcus xanthus DK
1622]
Length = 963
Score = 37.1 bits (85), Expect = 7.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 379 TAPEQLSTLNLPF--SDRRLPELFFRYRARNFPHT--------LSEKEKQDWLEHRKK 426
+QL N F RL EL R R R + T L E++ WL HR +
Sbjct: 146 AEAQQLVETNGVFGEQRVRLTELLARLR-RTYTDTIGVEYMHMLDS-ERRRWLMHRME 201
>gi|238063163|ref|ZP_04607872.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
gi|237884974|gb|EEP73802.1| oligoribonuclease [Micromonospora sp. ATCC 39149]
Length = 198
Score = 37.1 bits (85), Expect = 7.2, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ + V D E G D+ D + A + D +
Sbjct: 3 VADLLVWIDCEMTGLDLGRDALIEVAALVTDPDLNVLGD 41
>gi|28867700|ref|NP_790319.1| exonuclease [Pseudomonas syringae pv. tomato str. DC3000]
gi|28850935|gb|AAO54014.1| exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
Length = 237
Score = 37.1 bits (85), Expect = 7.2, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 23/185 (12%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G ++ D+ V ++ + D L P AV I G+ P A
Sbjct: 47 DLETSGLNMNRDQVLSIGAVVIEDGAIDLGQQFERTLLRVDHKL-SP-AVLIHGLAPS-A 103
Query: 69 LRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGNSR 128
+ G E +F I+G++ FD + + + ++ +
Sbjct: 104 IAAGSEPVEALLDFMEFVGDSP--ILGFHA-PFDQHMLARALKESLDYRLQHAFFD---A 157
Query: 129 WDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYATLALV 188
++ ++ G L D G+ H+A AD T L
Sbjct: 158 AEIAPMLCEQANLRHAG--------------LDDWTQFFGLHAEERHNASADALVTAELA 203
Query: 189 WLIRE 193
++
Sbjct: 204 LILFS 208
>gi|21224413|ref|NP_630192.1| DNA polymerase III subunit epsilon [Streptomyces coelicolor A3(2)]
gi|13276811|emb|CAC33929.1| putative DNA polymerase [Streptomyces coelicolor A3(2)]
Length = 244
Score = 36.7 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 8 YDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQK 67
+D ET G D R A + V E + E +AV + GI+ ++
Sbjct: 11 FDLETTGTDPREARIVTGAVIEVRGS-EPLGRREWLA---DPGVEIPADAVAVHGISNER 66
Query: 68 ALRDGVVEAEFSRRIHQFF--SVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSY 118
A R+G + + I + N FD R+ S
Sbjct: 67 AAREGRPADQVADAIATVLVDHWKAGVPVVAYNAAFDLTLLAAELRRHALPSL 119
>gi|241894744|ref|ZP_04782040.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
ATCC 33313]
gi|241871956|gb|EER75707.1| DNA polymerase III, epsilon subunit [Weissella paramesenteroides
ATCC 33313]
Length = 177
Score = 36.7 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 30/191 (15%)
Query: 4 HFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGI 63
+F+ D+ET A VR D + ++ F+ D D I GI
Sbjct: 2 NFIAMDFETASAKRYSAVSLGLAVVR-DNKL--VDE---FYTLIKPDSFFDKRNTRIHGI 55
Query: 64 TPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWD 123
T + E +I Q F PN +I +N FD+ R +D
Sbjct: 56 TEADVRNAPIFP-EVWEQI-QQFYTPNQLVIAHNA-PFDNGVLRETL---------THYD 103
Query: 124 NGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYA 183
+ LD +R P+ + KL +A A GI+ + H+A D A
Sbjct: 104 IDLPHYLSLDTVRTSRKLYPEL----------PNHKLNTVAAALGIDLKHHHNALNDTVA 153
Query: 184 TLALVWLIREK 194
+ L+R+
Sbjct: 154 AAEI--LVRQA 162
>gi|183980430|ref|YP_001848721.1| cytochrome P450 191A3 Cyp191A3 [Mycobacterium marinum M]
gi|183173756|gb|ACC38866.1| cytochrome P450 191A3 Cyp191A3 [Mycobacterium marinum M]
Length = 402
Score = 36.7 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 21 RPAQFAGVRVDR--QWEKIESTEVFFCKPADDY 51
RP Q A VR D + +C PA +
Sbjct: 261 RPDQLAAVRTDPQSNVNVAREEMIRYCAPAQWF 293
>gi|56461400|ref|YP_156681.1| oligoribonuclease [Idiomarina loihiensis L2TR]
gi|81821669|sp|Q5QVW2|ORN_IDILO RecName: Full=Oligoribonuclease
gi|56180410|gb|AAV83132.1| Oligoribonuclease (3'->5' exoribonuclease) [Idiomarina loihiensis
L2TR]
Length = 183
Score = 36.7 bits (84), Expect = 7.9, Method: Composition-based stats.
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
+ D E G + + + A + D Q +
Sbjct: 10 LIWIDLEMTGLEPDENHIIEVATIVTDAQLNTLAE 44
>gi|306833904|ref|ZP_07467028.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
ATCC 700338]
gi|304423905|gb|EFM27047.1| DnaQ family exonuclease/DinG family helicase [Streptococcus bovis
ATCC 700338]
Length = 827
Score = 36.7 bits (84), Expect = 8.1, Method: Composition-based stats.
Identities = 42/202 (20%), Positives = 78/202 (38%), Gaps = 39/202 (19%)
Query: 2 TNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVF-- 59
+ + I D E G A+ Q V IE+ E+ D P EA+
Sbjct: 6 SQKYAIVDLEATGAH-AMAEIIQVGIV-------IIENDEIVKTYQT-DVNPH-EALSEH 55
Query: 60 ---ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYD 116
+TGIT ++ + +FS+ + F++ C+ +N++FD +
Sbjct: 56 IINLTGITDEQLAKA----PDFSQVAQEIFNLIEDCVFVAHNVKFDANLLAEQLFMEG-- 109
Query: 117 SYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHD 176
++ R D +++ + Y P+ + + L +LA ++ +AH
Sbjct: 110 -----YELRTPRVDTVELAQVFY---------PTFEK----YSLGNLADVLALDLADAHT 151
Query: 177 AKADVYATLALVWLIREKKPKL 198
A +D YAT L ++ K L
Sbjct: 152 AISDAYATAQLFLKLKAKMKSL 173
>gi|297198751|ref|ZP_06916148.1| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
gi|297147193|gb|EDY59400.2| DNA polymerase III subunit epsilon [Streptomyces sviceus ATCC
29083]
Length = 327
Score = 36.7 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 56/176 (31%), Gaps = 33/176 (18%)
Query: 9 DYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGITPQKA 68
D ET G DR A R+D + ++E P D P V+I G+T
Sbjct: 27 DVETTGL-ARDDRIISAAVYRLDAR-GEVEDHWYTLVNPERD----PGPVWIHGLT---- 76
Query: 69 LRDGVVEAEFSRRIHQFFSVP--NTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDNGN 126
D + A + I FS ++ +N + FD +
Sbjct: 77 -SDALEGAPLFQDIADEFSSRLDGRVLVAHNAV-FDWQM------------IAREYARAG 122
Query: 127 SRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVY 182
+ + I G+ P+ KL+ LA G+ AH A D
Sbjct: 123 RVAPVSQRLCTIVLSKELGLPLPNH-------KLESLAAHFGVVQQRAHHALDDAR 171
>gi|195977857|ref|YP_002123101.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit
epsilon [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974562|gb|ACG62088.1| probable ATP-dependent helicase DinG [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 821
Score = 36.7 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 33/139 (23%)
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGIT Q+ + +FS+ F + C+ +N+ FD +
Sbjct: 59 LTGITDQQLAQA----PDFSQVARTIFELIEDCVFVAHNVTFDANLLAEALFLEG----- 109
Query: 120 WSWDNGNSRWDLL----DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+DLL D + F P ++ L L+ + +AH
Sbjct: 110 ---------YDLLTPRVDTVELAQIFYPSLEKYS----------LSHLSEVLDLNLSDAH 150
Query: 176 DAKADVYATLAL-VWLIRE 193
A AD AT L + L+ +
Sbjct: 151 TAIADAQATANLFIKLLHK 169
>gi|218778072|ref|YP_002429390.1| exonuclease RNase T and DNA polymerase III [Desulfatibacillum
alkenivorans AK-01]
gi|218759456|gb|ACL01922.1| Exonuclease RNase T and DNA polymerase III [Desulfatibacillum
alkenivorans AK-01]
Length = 175
Score = 36.7 bits (84), Expect = 8.7, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYL--PDPEAV 58
V D E G + + A + D + L DP ++
Sbjct: 2 VWIDMEMTGLNPDNSVIVEIATLITDGDLNLVAEGPELAIFHPPHVLENIDPWSL 56
>gi|138896955|ref|YP_001127408.1| hypothetical protein GTNG_3324 [Geobacillus thermodenitrificans
NG80-2]
gi|134268468|gb|ABO68663.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 160
Score = 36.7 bits (84), Expect = 8.7, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 352 SSQDVDSQLYDGFFADVDRQIMDRI---------LRTAPEQLSTLNLPFSDRRLPELFFR 402
D D LY+ F + R + L ++D R+ ++F
Sbjct: 57 PKTDADRDLYNNFDDPEKTRQNPNFISLAEGSENQRVNTRKAVQLIERYTDYRVNSIWFH 116
Query: 403 ----YRARNFPHTLSEKEKQDWLEHRKKMLTRSRIEEYK 437
Y N P TLS KE+Q R L I Y+
Sbjct: 117 GDNMYVTVNVPDTLSAKERQR-EASRIDELLTKAIPTYE 154
>gi|261260057|sp|Q60Z52|CED4_CAEBR RecName: Full=Cell death protein 4
gi|309371245|emb|CAP35494.3| CBR-CED-4 protein [Caenorhabditis briggsae AF16]
Length = 569
Score = 36.7 bits (84), Expect = 8.9, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 33/223 (14%)
Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT-------- 237
AL+ + + +PK FE + +K + R L I+ +TP + S + + +
Sbjct: 356 ALMMIFKSCEPKTFEKMAQLNSKLETRGLSAIECITPYCYKS-LSSSLQRCVEVLSDEDR 414
Query: 238 -----ALIAPVAWHPRYK--DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
A+I P K VI ++ + D + KRL L G
Sbjct: 415 SALAFAVIMPPGIDIPVKIWSCVIPVDICSNEEDQLDDEVADRLKRLSKRGALLSG-KRS 473
Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ------TNLRDRFKAI 344
P+ ++ L + + L L ++ +F+
Sbjct: 474 PVLTYKIDHVIHLFLKHVV---DVQTIANGISILEQRLHELGNNNTPTPERHMPSKFRRT 530
Query: 345 YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTL 387
+D D +I RT + L
Sbjct: 531 SAGDMFPKVED-------SVIRPEDYSKFMQIHRTFYDSLKKF 566
>gi|268574100|ref|XP_002642027.1| C. briggsae CBR-CED-4 protein [Caenorhabditis briggsae]
Length = 554
Score = 36.7 bits (84), Expect = 9.0, Method: Composition-based stats.
Identities = 36/223 (16%), Positives = 66/223 (29%), Gaps = 33/223 (14%)
Query: 186 ALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNT-------- 237
AL+ + + +PK FE + +K + R L I+ +TP + S + + +
Sbjct: 341 ALMMIFKSCEPKTFEKMAQLNSKLETRGLSAIECITPYCYKS-LSSSLQRCVEVLSDEDR 399
Query: 238 -----ALIAPVAWHPRYK--DSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPV 290
A+I P K VI ++ + D + KRL L G
Sbjct: 400 SALAFAVIMPPGIDIPVKIWSCVIPVDICSNEEDQLDDEVADRLKRLSKRGALLSG-KRS 458
Query: 291 PIKEVHLNKCPILMPIDYCKKEHFERWGIDHKRCLENLTLLRQQ------TNLRDRFKAI 344
P+ ++ L + + L L ++ +F+
Sbjct: 459 PVLTYKIDHVIHLFLKHVV---DVQTIANGISILEQRLHELGNNNTPTPERHMPSKFRRT 515
Query: 345 YNKPYTSSSQDVDSQLYDGFFADVDRQIMDRILRTAPEQLSTL 387
+D D +I RT + L
Sbjct: 516 SAGDMFPKVED-------SVIRPEDYSKFMQIHRTFYDSLKKF 551
>gi|119946100|ref|YP_943780.1| ribonuclease T [Psychromonas ingrahamii 37]
gi|119864704|gb|ABM04181.1| RNAse T [Psychromonas ingrahamii 37]
Length = 207
Score = 36.7 bits (84), Expect = 9.3, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 6 VIYDYETFGRDVALDRPAQFAGVRVDRQWE---KIESTEVFFCKPADDYLPDPEAVFITG 62
VI D ET G + D + A + + F P + DP+A+ TG
Sbjct: 15 VIIDIETSGLNAQTDAILEIAAILPAMDSQGYLFAAEKIHFNVLPFEGANLDPKALAFTG 74
Query: 63 ITPQKALRDGVVEAEFSRRIHQF 85
I P LR V E + I +
Sbjct: 75 IDPFNPLRAAVDERDALTEIFKL 97
>gi|225870177|ref|YP_002746124.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
gi|225699581|emb|CAW93205.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
4047]
Length = 823
Score = 36.7 bits (84), Expect = 9.4, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 33/139 (23%)
Query: 60 ITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYR 119
+TGIT Q+ + +FS+ F + C+ +N+ FD +
Sbjct: 59 LTGITDQQLAQA----PDFSQVARTIFELIEDCVFVAHNVTFDANLLAEALFLEG----- 109
Query: 120 WSWDNGNSRWDLL----DVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAH 175
+DLL D + F P ++ L L+ + +AH
Sbjct: 110 ---------YDLLTPRVDTVELAQIFYPSLEKYS----------LSHLSEVLDLNLSDAH 150
Query: 176 DAKADVYATLAL-VWLIRE 193
A AD AT L + L+ +
Sbjct: 151 TAIADAQATANLFIKLLHK 169
>gi|78065586|ref|YP_368355.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
gi|77966331|gb|ABB07711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
Length = 378
Score = 36.7 bits (84), Expect = 9.4, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 57/199 (28%), Gaps = 43/199 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFA-------GVRVDRQWEKIESTEVFFCKPADDYLPDPEA 57
V D ET G A R + GV F +
Sbjct: 16 LVFVDLETTGGSPAEHRITEIGVVEIGPLGVSTWTTLVNPGQPIPPFIQQ---------- 65
Query: 58 VFITGITPQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDS 117
+TGI+ + +RD A + + + + +N FD + R F R +
Sbjct: 66 --LTGIS-DEMVRDAPSFASLAPALFERLD--GKLFVAHNA-SFDRGFLRAEFERAGFA- 118
Query: 118 YRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDA 177
D+L +R A P G L L +G+ H A
Sbjct: 119 ---------FNPDVLCTVRLSRALFPR-----ETRHG-----LDALIERHGLVPAARHRA 159
Query: 178 KADVYATLALVWLIREKKP 196
AD L L+ + P
Sbjct: 160 LADADLLLQFWRLLHDIVP 178
>gi|184201097|ref|YP_001855304.1| oligoribonuclease [Kocuria rhizophila DC2201]
gi|183581327|dbj|BAG29798.1| oligoribonuclease [Kocuria rhizophila DC2201]
Length = 199
Score = 36.3 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 7 IYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFIT----- 61
D E G ++ D + A + D + + S KP L T
Sbjct: 2 WIDCEMTGLSLSEDALIEVAALVTDDELNVLGSGVDVVIKPPQQALEQMNDFVRTMHENS 61
Query: 62 GITPQKALRDGVVEAEFSRR----IHQFFSVPNTCIIGYNNIRFDDYYS 106
G+ P+ L G+ A+ I ++ +G N++ D +
Sbjct: 62 GLLPE--LERGMDMAQAQAMVLDYIREWVPDAGKAPLGGNSVGTDKTFL 108
>gi|305680783|ref|ZP_07403590.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
gi|305658988|gb|EFM48488.1| oligoribonuclease [Corynebacterium matruchotii ATCC 14266]
Length = 209
Score = 36.3 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIES 39
V D E G D+ + A + D +
Sbjct: 10 IVWIDLEMTGLDIHEHTIVEVAALITDADLNVLGE 44
>gi|90407122|ref|ZP_01215310.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
gi|90311698|gb|EAS39795.1| DNA polymerase III, epsilon chain [Psychromonas sp. CNPT3]
Length = 238
Score = 36.3 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 42/200 (21%)
Query: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPE------AV 58
FV D+ET G D + V D + +C+ A + +PE ++
Sbjct: 48 FVALDFETTGLDSKQNSIISIGLVPFDL--------QRIYCRKAKKWYINPEDNLKENSI 99
Query: 59 FITGITPQKAL----RDGVVEA---EFSRRIHQFFSVPNTCIIGYNNIRFD--DYYSRNI 109
I GIT ++E E + ++ ++ Y I D D R
Sbjct: 100 IIHGITHSDLQGAPDLLSILEPLLKELAGKV---------VVVHYRRIERDFFDLDLRAQ 150
Query: 110 FYRNFYDSYRWSWDNGNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGI 169
+ + ++ Y S I W + + S +L + + +
Sbjct: 151 LKEGIIFPVIDTMQ-------IEADVQNKY--SKGFINW-LKGHQSESIRLANSRVRYNL 200
Query: 170 EHVNAHDAKADVYATLALVW 189
+ HDA D AT L+
Sbjct: 201 PAYSPHDALTDAIATAELLQ 220
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.161 0.504
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,007,014,018
Number of Sequences: 14124377
Number of extensions: 568384087
Number of successful extensions: 1267914
Number of sequences better than 10.0: 3718
Number of HSP's better than 10.0 without gapping: 2161
Number of HSP's successfully gapped in prelim test: 2270
Number of HSP's that attempted gapping in prelim test: 1260189
Number of HSP's gapped (non-prelim): 5327
length of query: 471
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 328
effective length of database: 2,823,007,719
effective search space: 925946531832
effective search space used: 925946531832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 84 (36.7 bits)